test_pipeline.yml

name: Test pipeline

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

jobs:
  test:
    runs-on: macos-latest
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python 3.9
        uses: actions/setup-python@v4
        with:
          python-version: "3.9"
      - name: Install Pylossless & Deps
        run: pip install -e .
      - name: Install testing dependencies
        run: pip install -r requirements_testing.txt
      - name: Install QC depedencies
        run: pip install -r requirements_qc.txt
      - name: install openneuro
        run: pip install openneuro-py
      - name: install pytorch
        run: pip install torch
      - name: Test Pipeline
        run: |
          coverage run -m pytest
      - name: Upload coverage to codecov
        uses: codecov/codecov-action@v3
        with:
          token: ${{secrets.CODECOV_TOKEN}}