diff --git a/README.md b/README.md index ac54b75..b753c78 100644 --- a/README.md +++ b/README.md @@ -11,3 +11,19 @@ A simpler version of atavide that relies only on slurm or PBS scripts. Some of t See the verions: - [slurm](slurm/README.md) - designed to work on Flinders deepthought infrastructure - [pbs](pbs/README.md) - designed to work on the NCI infrastructrue for now + + +Currently the pipeline depends on + + - fastp + - samtools + - minimap2 + - megahit + - mmseqs + - vamb + +You can install all of these with: + +``` +mamba install -y fastp samtools minimap2 megahit mmseqs vamb +```