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Definition: C08BasedTraversals.h:17
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Definition: C08CellPairTraversal.h:20
CellProcessor
Definition: CellProcessor.h:29
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
C08CellPairTraversalData
Definition: C08CellPairTraversal.h:16
CellPairTraversalData
Definition: CellPairTraversals.h:16
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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diff --git a/CollectiveCommBase_8h_source.html b/CollectiveCommBase_8h_source.html index bced5c7369..b4dd1896d2 100644 --- a/CollectiveCommBase_8h_source.html +++ b/CollectiveCommBase_8h_source.html @@ -199,7 +199,7 @@
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diff --git a/CollectiveCommunicationInterface_8h_source.html b/CollectiveCommunicationInterface_8h_source.html index ead52cebe4..5445312e39 100644 --- a/CollectiveCommunicationInterface_8h_source.html +++ b/CollectiveCommunicationInterface_8h_source.html @@ -103,7 +103,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/CollectiveCommunicationNonBlocking_8h_source.html b/CollectiveCommunicationNonBlocking_8h_source.html index 05a317fced..1214e93b09 100644 --- a/CollectiveCommunicationNonBlocking_8h_source.html +++ b/CollectiveCommunicationNonBlocking_8h_source.html @@ -242,12 +242,12 @@
CollectiveCommunicationNonBlocking::getLongDouble
long double getLongDouble() override
Definition: CollectiveCommunicationNonBlocking.h:158
CollectiveCommunicationNonBlocking::broadcast
void broadcast(int root=0) override
Definition: CollectiveCommunicationNonBlocking.h:164
CollectiveCommunicationNonBlocking::appendInt
void appendInt(int intValue) override
Definition: CollectiveCommunicationNonBlocking.h:83
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
type
Enumeration class corresponding to the type schema type.
Definition: vtk-unstructured.h:1198
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/CollectiveCommunicationSingleNonBlocking_8h_source.html b/CollectiveCommunicationSingleNonBlocking_8h_source.html index 8077818432..677bcc317c 100644 --- a/CollectiveCommunicationSingleNonBlocking_8h_source.html +++ b/CollectiveCommunicationSingleNonBlocking_8h_source.html @@ -227,7 +227,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/CollectiveCommunication_8h_source.html b/CollectiveCommunication_8h_source.html index af11a486f2..007e2eb3f9 100644 --- a/CollectiveCommunication_8h_source.html +++ b/CollectiveCommunication_8h_source.html @@ -428,13 +428,13 @@
CollectiveCommunication::appendLongDouble
void appendLongDouble(long double longDoubleValue) override
Definition: CollectiveCommunication.h:118
CollectiveCommunication::add
static void add(valType *invec, valType *inoutvec, int *, MPI_Datatype *dtype)
method used by MPI to add variables of this type
Definition: CollectiveCommunication.h:277
CollectiveCommunication::getTopology
MPI_Comm getTopology() override
Definition: CollectiveCommunication.h:125
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
type
Enumeration class corresponding to the type schema type.
Definition: vtk-unstructured.h:1198
CollectiveCommBase::valType
Definition: CollectiveCommBase.h:29
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diff --git a/DomainDecomposition_8h_source.html b/DomainDecomposition_8h_source.html index 0054a3819a..cb280576d2 100644 --- a/DomainDecomposition_8h_source.html +++ b/DomainDecomposition_8h_source.html @@ -149,7 +149,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/Domain_8h_source.html b/Domain_8h_source.html index da80f6ab59..ab9b67578f 100644 --- a/Domain_8h_source.html +++ b/Domain_8h_source.html @@ -393,13 +393,13 @@
Domain::setLocalSumIw2
void setLocalSumIw2(double sumIw2, int thermostat)
sets _localSumIw2 to the given value
Definition: Domain.cpp:135
Domain::readXML
void readXML(XMLfileUnits &xmlconfig)
Definition: Domain.cpp:82
ParticleContainer
This Interface is used to get access to particles and pairs of particles.
Definition: ParticleContainer.h:69
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
XMLfileUnits
XML file with unit attributes abstraction.
Definition: xmlfileUnits.h:25
xml_schema::string
::xsd::cxx::tree::string< char, simple_type > string
C++ type corresponding to the string XML Schema built-in type.
Definition: xml-schema.h:268
-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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diff --git a/GrandCanonicalEnsemble_8h_source.html b/GrandCanonicalEnsemble_8h_source.html index 0a8a117d18..860393ee83 100644 --- a/GrandCanonicalEnsemble_8h_source.html +++ b/GrandCanonicalEnsemble_8h_source.html @@ -185,12 +185,12 @@
GrandCanonicalEnsemble::storeSample
void storeSample(Molecule *m, uint32_t componentid) override
Definition: GrandCanonicalEnsemble.cpp:139
GrandCanonicalEnsemble::mu
double mu() override
Returns the global chemical potential of the ensemble.
Definition: GrandCanonicalEnsemble.h:59
ParticleContainer
This Interface is used to get access to particles and pairs of particles.
Definition: ParticleContainer.h:69
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
XMLfileUnits
XML file with unit attributes abstraction.
Definition: xmlfileUnits.h:25
-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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diff --git a/NeighbourCommunicationScheme_8h_source.html b/NeighbourCommunicationScheme_8h_source.html index f3308026dc..708d9101f2 100644 --- a/NeighbourCommunicationScheme_8h_source.html +++ b/NeighbourCommunicationScheme_8h_source.html @@ -292,7 +292,7 @@
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diff --git a/NeutralTerritoryTraversal_8h_source.html b/NeutralTerritoryTraversal_8h_source.html index 473610d2cc..e3410233ef 100644 --- a/NeutralTerritoryTraversal_8h_source.html +++ b/NeutralTerritoryTraversal_8h_source.html @@ -224,13 +224,13 @@
CellProcessor::processCellPair
virtual void processCellPair(ParticleCell &cell1, ParticleCell &cell2, bool sumAll=false)=0
NeutralTerritoryTraversal
Definition: NeutralTerritoryTraversal.h:25
NeutralTerritoryTraversal::rebuild
void rebuild(std::vector< CellTemplate > &cells, const std::array< unsigned long, 3 > &dims, double cellLength[3], double cutoff, CellPairTraversalData *data) override
Definition: NeutralTerritoryTraversal.h:38
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
CellPairTraversalData
Definition: CellPairTraversals.h:16
NeutralTerritoryTraversalData
Definition: NeutralTerritoryTraversal.h:13
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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diff --git a/OptionParser_8h_source.html b/OptionParser_8h_source.html index 2709abcaeb..c1f331f42e 100644 --- a/OptionParser_8h_source.html +++ b/OptionParser_8h_source.html @@ -325,7 +325,7 @@
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diff --git a/OriginalCellPairTraversal_8h_source.html b/OriginalCellPairTraversal_8h_source.html index 3d9031745b..9dd08f1df7 100644 --- a/OriginalCellPairTraversal_8h_source.html +++ b/OriginalCellPairTraversal_8h_source.html @@ -294,14 +294,14 @@
OriginalCellPairTraversal::_backwardNeighbourOffsets
std::array< long, 13 > _backwardNeighbourOffsets
Neighbours that come in the total ordering before a cell.
Definition: OriginalCellPairTraversal.h:53
OriginalCellPairTraversal::_forwardNeighbourOffsets
std::array< long, 13 > _forwardNeighbourOffsets
Neighbours that come in the total ordering after a cell.
Definition: OriginalCellPairTraversal.h:52
OriginalCellPairTraversal::_innerMostCellIndices
std::vector< unsigned long > _innerMostCellIndices
Vector containing the indices (for the cells vector) of all inner cells (without boundary)
Definition: OriginalCellPairTraversal.h:54
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
type
Enumeration class corresponding to the type schema type.
Definition: vtk-unstructured.h:1198
CellPairTraversalData
Definition: CellPairTraversals.h:16
OriginalCellPairTraversalData
Definition: OriginalCellPairTraversal.h:17
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ParticleDataRMM_8h_source.html b/ParticleDataRMM_8h_source.html index beab4cea37..03fff548e4 100644 --- a/ParticleDataRMM_8h_source.html +++ b/ParticleDataRMM_8h_source.html @@ -101,7 +101,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ParticleData_8h_source.html b/ParticleData_8h_source.html index d6e94b4ad2..2190e05cd3 100644 --- a/ParticleData_8h_source.html +++ b/ParticleData_8h_source.html @@ -84,7 +84,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ParticleForceData_8h_source.html b/ParticleForceData_8h_source.html index 7738ed12bb..a94e0d8ce3 100644 --- a/ParticleForceData_8h_source.html +++ b/ParticleForceData_8h_source.html @@ -102,7 +102,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ParticleIterator_8h_source.html b/ParticleIterator_8h_source.html index 20ee164227..12871ceec9 100644 --- a/ParticleIterator_8h_source.html +++ b/ParticleIterator_8h_source.html @@ -279,7 +279,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ParticlePairs2LoadCalcAdapter_8h_source.html b/ParticlePairs2LoadCalcAdapter_8h_source.html index 7c603b54fd..59b93d13be 100644 --- a/ParticlePairs2LoadCalcAdapter_8h_source.html +++ b/ParticlePairs2LoadCalcAdapter_8h_source.html @@ -176,7 +176,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ParticlePairs2PotForceAdapter_8h_source.html b/ParticlePairs2PotForceAdapter_8h_source.html index cec80fa487..535372d4f7 100644 --- a/ParticlePairs2PotForceAdapter_8h_source.html +++ b/ParticlePairs2PotForceAdapter_8h_source.html @@ -249,12 +249,12 @@
ParticlePairs2PotForceAdapter::~ParticlePairs2PotForceAdapter
~ParticlePairs2PotForceAdapter()
Destructor.
Definition: ParticlePairs2PotForceAdapter.h:41
ParticlePairs2PotForceAdapter::ParticlePairs2PotForceAdapter
ParticlePairs2PotForceAdapter(Domain &domain)
Constructor.
Definition: ParticlePairs2PotForceAdapter.h:23
ParticlePairsHandler
interface for defining the action performed when processing a pair
Definition: ParticlePairsHandler.h:38
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
ParticlePairs2PotForceAdapter::PP2PFAThreadData
Definition: ParticlePairs2PotForceAdapter.h:102
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ParticlePairsHandler_8h_source.html b/ParticlePairsHandler_8h_source.html index 9fb44f097d..53467f813c 100644 --- a/ParticlePairsHandler_8h_source.html +++ b/ParticlePairsHandler_8h_source.html @@ -110,7 +110,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:23 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:52 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:23 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:52 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/PseudoParticleContainer_8h_source.html b/PseudoParticleContainer_8h_source.html index 8a0a450dc2..587ee105cd 100644 --- a/PseudoParticleContainer_8h_source.html +++ b/PseudoParticleContainer_8h_source.html @@ -161,7 +161,7 @@
-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
diff --git a/PseudoParticle_8h_source.html b/PseudoParticle_8h_source.html index 3c11364d56..80d1a8c8e7 100644 --- a/PseudoParticle_8h_source.html +++ b/PseudoParticle_8h_source.html @@ -150,7 +150,7 @@
-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
diff --git a/Quaternion_8h_source.html b/Quaternion_8h_source.html index 5fc275b056..0b59e4d2bd 100644 --- a/Quaternion_8h_source.html +++ b/Quaternion_8h_source.html @@ -165,7 +165,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/QuickschedTraversal_8h_source.html b/QuickschedTraversal_8h_source.html index 71faa7e584..fafe98f919 100644 --- a/QuickschedTraversal_8h_source.html +++ b/QuickschedTraversal_8h_source.html @@ -338,7 +338,7 @@
CellProcessor
Definition: CellProcessor.h:29
QuickschedTraversal
Definition: QuickschedTraversal.h:27
QuickschedTraversal::rebuild
virtual void rebuild(std::vector< CellTemplate > &cells, const std::array< unsigned long, 3 > &dims, double cellLength[3], double cutoff, CellPairTraversalData *data)
Definition: QuickschedTraversal.h:81
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
VectorizedCellProcessor
Vectorized calculation of the force.
Definition: VectorizedCellProcessor.h:29
type
Enumeration class corresponding to the type schema type.
Definition: vtk-unstructured.h:1198
CellPairTraversalData
Definition: CellPairTraversals.h:16
@@ -346,7 +346,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/RDFCellProcessor_8h_source.html b/RDFCellProcessor_8h_source.html index f3dc310de9..18aa6429cd 100644 --- a/RDFCellProcessor_8h_source.html +++ b/RDFCellProcessor_8h_source.html @@ -129,7 +129,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/RegionParticleIterator_8h_source.html b/RegionParticleIterator_8h_source.html index 1616879b5d..bc54e23552 100644 --- a/RegionParticleIterator_8h_source.html +++ b/RegionParticleIterator_8h_source.html @@ -252,7 +252,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/Region_8h_source.html b/Region_8h_source.html index a98042e34a..186d2e9bca 100644 --- a/Region_8h_source.html +++ b/Region_8h_source.html @@ -211,7 +211,7 @@
-Generated on Fri Sep 8 2023 08:56:23 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:52 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:23 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:52 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
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-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/SIMD__VectorizedCellProcessorHelpers_8h_source.html b/SIMD__VectorizedCellProcessorHelpers_8h_source.html index 75d088df82..30702c6870 100644 --- a/SIMD__VectorizedCellProcessorHelpers_8h_source.html +++ b/SIMD__VectorizedCellProcessorHelpers_8h_source.html @@ -500,7 +500,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:51 for ls1-MarDyn by doxygen 1.9.2
diff --git a/ScenarioGenerator.html b/ScenarioGenerator.html index bbcbb4eb2e..329b448d52 100644 --- a/ScenarioGenerator.html +++ b/ScenarioGenerator.html @@ -102,7 +102,7 @@
-Generated on Fri Sep 8 2023 08:56:23 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:52 for ls1-MarDyn by doxygen 1.9.2
diff --git a/SigsegvHandler_8h_source.html b/SigsegvHandler_8h_source.html index b4dceef97d..9124dd9880 100644 --- a/SigsegvHandler_8h_source.html +++ b/SigsegvHandler_8h_source.html @@ -109,11 +109,11 @@
37
38#endif
39
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
-Generated on Fri Sep 8 2023 08:56:23 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:52 for ls1-MarDyn by doxygen 1.9.2
diff --git a/SimpleCellProcessor_8h_source.html b/SimpleCellProcessor_8h_source.html index ad4b00efb6..fccd8c2a3c 100644 --- a/SimpleCellProcessor_8h_source.html +++ b/SimpleCellProcessor_8h_source.html @@ -112,7 +112,7 @@
-Generated on Fri Sep 8 2023 08:56:21 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:50 for ls1-MarDyn by doxygen 1.9.2
diff --git a/Simulation_8h_source.html b/Simulation_8h_source.html index 6e2c4b26ac..69876a1eb2 100644 --- a/Simulation_8h_source.html +++ b/Simulation_8h_source.html @@ -395,20 +395,18 @@
569 void markSimAsDone();
570
571private:
-
572 /*** @brief Various timers used to keep track of simulation performance. */
-
573 Timer& _loopTimer, _decompositionTimer, _computationTimer, _perStepIoTimer, _forceCalculationTimer, _mpiOMPCommunicationTimer;
-
574 // stores the timing info for the previous load. This is used for the load calculation and the rebalancing.
-
575 double previousTimeForLoad = 0.;
-
576 /*** @brief Act as safeguards for the preSimLoopSteps(), simulateOneTimestep() and postSimLoopSteps() functions.
-
577 *
-
578 * These three functions are public, since they need to be reachable by external code when ls1 is compiled
-
579 * as a library. However it is possible to call them out of order, causing unexpected behaviour. As such,
-
580 * these bool values help keep track of the simulation and can be used to verify the state the simulation is in.
-
581 */
-
582 bool preSimLoopStepsDone = false, simulationDone = false, postSimLoopStepsDone = false;
-
583
-
584};
-
585#endif /*SIMULATION_H_*/
+
572 // stores the timing info for the previous load. This is used for the load calculation and the rebalancing.
+
573 double previousTimeForLoad = 0.;
+
574 /*** @brief Act as safeguards for the preSimLoopSteps(), simulateOneTimestep() and postSimLoopSteps() functions.
+
575 *
+
576 * These three functions are public, since they need to be reachable by external code when ls1 is compiled
+
577 * as a library. However it is possible to call them out of order, causing unexpected behaviour. As such,
+
578 * these bool values help keep track of the simulation and can be used to verify the state the simulation is in.
+
579 */
+
580 bool preSimLoopStepsDone = false, simulationDone = false, postSimLoopStepsDone = false;
+
581
+
582};
+
583#endif /*SIMULATION_H_*/
SysMon.h
System monitoring class.
CellProcessor
Definition: CellProcessor.h:29
DomainDecompBase
handle boundary region and multiple processes
Definition: DomainDecompBase.h:51
@@ -429,36 +427,36 @@
RDF
This class calculates the Radial Distribution Function (RDF).
Definition: RDF.h:37
Random
Definition: Random.h:12
Simulation
Controls the simulation process.
Definition: Simulation.h:70
-
Simulation::pluginEndStepCall
void pluginEndStepCall(unsigned long simstep)
call plugins every nth-simstep
Definition: Simulation.cpp:1301
-
Simulation::setDomainDecomposition
void setDomainDecomposition(DomainDecompBase *domainDecomposition)
Definition: Simulation.cpp:1406
+
Simulation::pluginEndStepCall
void pluginEndStepCall(unsigned long simstep)
call plugins every nth-simstep
Definition: Simulation.cpp:1295
+
Simulation::setDomainDecomposition
void setDomainDecomposition(DomainDecompBase *domainDecomposition)
Definition: Simulation.cpp:1400
Simulation::domainDecomposition
DomainDecompBase & domainDecomposition()
Definition: Simulation.h:216
Simulation::getAndResetOneLoopCompTime
double getAndResetOneLoopCompTime()
computational time for one execution of traverseCell
Definition: Simulation.h:412
-
Simulation::simulateOneTimestep
void simulateOneTimestep()
Definition: Simulation.cpp:1019
-
Simulation::performOverlappingDecompositionAndCellTraversalStep
void performOverlappingDecompositionAndCellTraversalStep(double etime)
Definition: Simulation.cpp:1386
-
Simulation::readXML
void readXML(XMLfileUnits &xmlconfig)
Read in XML configuration for simulation and all its included objects.
Definition: Simulation.cpp:173
-
Simulation::simulate
void simulate()
Controls the main loop of the simulation.
Definition: Simulation.cpp:948
+
Simulation::simulateOneTimestep
void simulateOneTimestep()
Definition: Simulation.cpp:1013
+
Simulation::performOverlappingDecompositionAndCellTraversalStep
void performOverlappingDecompositionAndCellTraversalStep(double etime)
Definition: Simulation.cpp:1380
+
Simulation::readXML
void readXML(XMLfileUnits &xmlconfig)
Read in XML configuration for simulation and all its included objects.
Definition: Simulation.cpp:167
+
Simulation::simulate
void simulate()
Controls the main loop of the simulation.
Definition: Simulation.cpp:942
Simulation::getMoleculeContainer
ParticleContainer * getMoleculeContainer()
Definition: Simulation.h:225
-
Simulation::initConfigXML
void initConfigXML(const std::string &inputfilename)
Opens given XML file and reads in parameters for the simulaion.
Definition: Simulation.cpp:702
+
Simulation::initConfigXML
void initConfigXML(const std::string &inputfilename)
Opens given XML file and reads in parameters for the simulaion.
Definition: Simulation.cpp:696
Simulation::getH
double getH()
get Planck constant
Definition: Simulation.h:297
-
Simulation::refreshParticleIDs
void refreshParticleIDs()
Refresh particle IDs to continuous numbering starting at zero.
Definition: Simulation.cpp:1495
-
Simulation::readConfigFile
void readConfigFile(std::string filename)
process configuration file
Definition: Simulation.cpp:690
+
Simulation::refreshParticleIDs
void refreshParticleIDs()
Refresh particle IDs to continuous numbering starting at zero.
Definition: Simulation.cpp:1489
+
Simulation::readConfigFile
void readConfigFile(std::string filename)
process configuration file
Definition: Simulation.cpp:684
Simulation::getIntegrator
Integrator * getIntegrator()
Definition: Simulation.h:222
Simulation::Simulation
Simulation()
Definition: Simulation.cpp:92
-
Simulation::getPlugin
PluginBase * getPlugin(const std::string &name)
get plugin
Definition: Simulation.cpp:1478
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
-
Simulation::updateParticleContainerAndDecomposition
void updateParticleContainerAndDecomposition(double lastTraversalTime, bool useTimers)
Definition: Simulation.cpp:1350
-
Simulation::initialize
void initialize()
Definition: Simulation.cpp:1430
+
Simulation::getPlugin
PluginBase * getPlugin(const std::string &name)
get plugin
Definition: Simulation.cpp:1472
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
+
Simulation::updateParticleContainerAndDecomposition
void updateParticleContainerAndDecomposition(double lastTraversalTime, bool useTimers)
Definition: Simulation.cpp:1344
+
Simulation::initialize
void initialize()
Definition: Simulation.cpp:1424
Simulation::setLoopAbortTime
void setLoopAbortTime(double time)
Definition: Simulation.h:236
Simulation::getSimulationStep
unsigned long getSimulationStep()
Definition: Simulation.h:234
Simulation::getDomain
Domain * getDomain()
Definition: Simulation.h:219
Simulation::setNumTimesteps
void setNumTimesteps(unsigned long steps)
Definition: Simulation.h:228
-
Simulation::~Simulation
~Simulation()
Definition: Simulation.cpp:140
+
Simulation::~Simulation
~Simulation()
Definition: Simulation.cpp:134
Simulation::getNumInitTimesteps
unsigned long getNumInitTimesteps()
Definition: Simulation.h:232
Simulation::setH
void setH(double h_extern)
set Planck constant
Definition: Simulation.h:299
-
Simulation::prepare_start
void prepare_start()
calculate all values for the starting timepoint
Definition: Simulation.cpp:793
-
Simulation::keepRunning
bool keepRunning()
Checks if Simsteps or MaxWallTime are reached.
Definition: Simulation.cpp:1457
-
Simulation::finalize
void finalize()
clean up simulation
Definition: Simulation.cpp:1327
-
Simulation::Tfactor
double Tfactor(unsigned long simstep)
Temperature increase factor function during automatic equilibration.
Definition: Simulation.cpp:1416
+
Simulation::prepare_start
void prepare_start()
calculate all values for the starting timepoint
Definition: Simulation.cpp:787
+
Simulation::keepRunning
bool keepRunning()
Checks if Simsteps or MaxWallTime are reached.
Definition: Simulation.cpp:1451
+
Simulation::finalize
void finalize()
clean up simulation
Definition: Simulation.cpp:1321
+
Simulation::Tfactor
double Tfactor(unsigned long simstep)
Temperature increase factor function during automatic equilibration.
Definition: Simulation.cpp:1410
Simulation::initGlobalEnergyLog
void initGlobalEnergyLog()
Simulation::getNumTimesteps
unsigned long getNumTimesteps()
Definition: Simulation.h:230
TemperatureControl
Definition: TemperatureControl.h:167
@@ -474,7 +472,7 @@
-Generated on Fri Sep 8 2023 08:56:22 for ls1-MarDyn by doxygen 1.9.2 +Generated on Wed Sep 27 2023 09:33:52 for ls1-MarDyn by doxygen 1.9.2
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diff --git a/SteereoIntegration_8h_source.html b/SteereoIntegration_8h_source.html index 3e28afa156..9fa6d7f1ea 100644 --- a/SteereoIntegration_8h_source.html +++ b/SteereoIntegration_8h_source.html @@ -101,7 +101,7 @@
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diff --git a/SysMonOutput_8h_source.html b/SysMonOutput_8h_source.html index f16b9148fd..ebb9ab7621 100644 --- a/SysMonOutput_8h_source.html +++ b/SysMonOutput_8h_source.html @@ -117,7 +117,7 @@
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diff --git a/TransferFunctionManager__UniformGrid_8h_source.html b/TransferFunctionManager__UniformGrid_8h_source.html index 36035e4d38..53c882de57 100644 --- a/TransferFunctionManager__UniformGrid_8h_source.html +++ b/TransferFunctionManager__UniformGrid_8h_source.html @@ -121,7 +121,7 @@
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diff --git a/TraversalTuner_8h_source.html b/TraversalTuner_8h_source.html index 83c8c5aec7..0969e55e7b 100644 --- a/TraversalTuner_8h_source.html +++ b/TraversalTuner_8h_source.html @@ -465,7 +465,7 @@
NeutralTerritoryTraversal
Definition: NeutralTerritoryTraversal.h:25
OriginalCellPairTraversal
Definition: OriginalCellPairTraversal.h:21
QuickschedTraversal
Definition: QuickschedTraversal.h:27
-
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:168
+
Simulation::exit
static void exit(int exitcode)
Terminate simulation with given exit code.
Definition: Simulation.cpp:162
SlicedCellPairTraversal
Definition: SlicedCellPairTraversal.h:19
TraversalTuner
Definition: TraversalTuner.h:23
TraversalTuner::rebuild
void rebuild(std::vector< CellTemplate > &cells, const std::array< unsigned long, 3 > &dims, double cellLength[3], double cutoff)
Definition: TraversalTuner.h:269
@@ -492,7 +492,7 @@
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                                                                                                        • _L : FullMolecule
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                                                                                                        • _lowCorner : KDNode
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                                                                                                                      Publications

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                                                                                                                      Background

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                                                                                                                      Old Config file format (used up to ls1-MarDyn 1.1)

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                                                                                                                      Parallelization

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                                                                                                                        - u -

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                                                                                                                          Writing the test header

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