ci.yml

name: CI

on:
  pull_request:
  push:
    branches:
      - main
      - fix_pipeline

permissions:
  contents: write

env:
    SKIP_DEPLOY: false
    SKIP_INSTALL: false
    SKIP_TEST: false

jobs:
  before_script:
    runs-on: self-hosted

    strategy:
      matrix:
        node-version: [ 20.x ]

    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.x'

      - name: Install dependencies
        run: |
          conda init bash
          source ~/.bashrc
          conda info
          source activate ci_env
        shell: bash

  test_sarvey:
    runs-on: self-hosted
    needs: before_script
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.x'

      - name: Run tests
        if: env.SKIP_TEST == 'false'
        run: |
          conda init bash
          source ~/.bashrc
          mamba env remove --name ci_temp_env --yes || echo "Environment ci_temp_env does not exist"

          conda create -n ci_temp_env --clone ci_env
          source activate ci_temp_env
          mamba install json5
          rm -rf tests/testdata
          wget -nv -c -O testdata.zip https://seafile.projekt.uni-hannover.de/f/4b3be399dffa488e98db/?dl=1
          unzip testdata.zip
          mv testdata tests/
          mamba list
          make pytest
        shell: bash

      - name: create docs
        if: env.SKIP_DEPLOY == 'false'
        run: |
          conda init bash
          source ~/.bashrc
          source activate ci_env
          make docs
        shell: bash

      - name: Upload coverage report
        if: env.SKIP_DEPLOY == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: coverage-report
          path: htmlcov/

      - name: Upload report.html
        if: env.SKIP_DEPLOY == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: test-report
          path: report.html

      - name: Upload docs
        if: env.SKIP_DEPLOY == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: docs
          path: docs/_build/html/

      - name: Upload cobertura coverage report
        if: env.SKIP_DEPLOY == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: cobertura-coverage
          path: coverage.xml

      - name: Upload junit report
        if: env.SKIP_DEPLOY == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: junit-report
          path: report.xml

  test_styles:
    runs-on: self-hosted
    needs: before_script
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.x'

      - name: Install dependencies
        if: env.SKIP_TEST == 'false'
        run: |
          conda init bash
          source ~/.bashrc
          conda info
          source activate ci_env
          make lint
        shell: bash

      - name: Upload flake8 log
        if: env.SKIP_TEST == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: flake8-log
          path: tests/linting/flake8.log

      - name: Upload pycodestyle log
        if: env.SKIP_TEST == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: pycodestyle-log
          path: tests/linting/pycodestyle.log

      - name: Upload pydocstyle log
        if: env.SKIP_TEST == 'false'
        uses: actions/upload-artifact@v4
        with:
          name: pydocstyle-log
          path: tests/linting/pydocstyle.log

  test_urls:
    runs-on: self-hosted
    needs: before_script
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.x'

      - name: Install dependencies
        if: env.SKIP_TEST == 'false'
        run: |
          conda init bash
          source ~/.bashrc
          conda info
          source activate ci_env
          make urlcheck
        shell: bash

  test_sarvey_install:
    runs-on: self-hosted
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.x'

      -   name: Install dependencies
          if: env.SKIP_INSTALL == 'false'
          run: |
              source $HOME/miniconda/bin/activate
              mamba update -n base mamba conda
              mamba info
              mamba env remove --name sarvey_testinstall --yes || echo "Environment sarvey_testinstall does not exist"
              pip install conda-merge
              wget https://raw.githubusercontent.com/insarlab/MiaplPy/main/conda-env.yml
              conda-merge conda-env.yml tests/CI_docker/context/environment_sarvey.yml > env.yml
              mamba env create --name sarvey_testinstall -f env.yml
              source activate sarvey_testinstall
              pip install git+https://github.com/insarlab/MiaplPy.git
              pip install .
              OUTPUT=$(pip check) || { echo "$OUTPUT"; true; }
              cd ..
              python -c "import sarvey; print(sarvey)"
          shell: bash

  deploy_pages:
    runs-on: self-hosted

    needs: test_sarvey
    if: github.ref == 'refs/heads/main'
    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: '3.x'

      - name: Download docs
        uses: actions/download-artifact@v4
        with:
          name: docs
          path: docs/_build/html/

      - name: Download coverage report
        uses: actions/download-artifact@v4
        with:
          name: coverage-report
          path: htmlcov/

      - name: Download report.html
        uses: actions/download-artifact@v4
        with:
          name: test-report

      - name: Deploy to GitHub Pages
        if: env.SKIP_DEPLOY == 'false'
        run: |
          rm -rf public
          mkdir -p public/docs
          mkdir -p public/images/
          mkdir -p public/coverage
          mkdir -p public/test_reports

          cp -r docs/_build/html/* public/docs/
          cp -r htmlcov/* public/coverage/
          cp report.html public/test_reports/
          ls -al public
          ls -al public/docs
          ls -al public/coverage
          ls -al public/test_reports
        shell: bash

      - name: Upload to GitHub Pages
        if: env.SKIP_DEPLOY == 'false'
        uses: peaceiris/actions-gh-pages@v4
        with:
          github_token: ${{ secrets.GITHUB_TOKEN }}
          publish_dir: ./public