From dbd62ed3ce675cf161b292bfec0fbe038b1e6d25 Mon Sep 17 00:00:00 2001 From: wkmor1 Date: Fri, 27 Oct 2023 07:36:07 +0300 Subject: [PATCH] Simplify record pagination Using simpler method should avoid unneccessary extra api requests. --- R/finbif_records.R | 18 +- R/utils.R | 23 - tests/cassettes/finbif_get_all.yml | 35 +- tests/cassettes/finbif_occurrence.yml | 3927 +++++++++++++++++++- tests/cassettes/finbif_occurrence_dups.yml | 106 +- 5 files changed, 4021 insertions(+), 88 deletions(-) diff --git a/R/finbif_records.R b/R/finbif_records.R index faa42e1a..f843b931 100644 --- a/R/finbif_records.R +++ b/R/finbif_records.R @@ -887,23 +887,15 @@ get_extra_pages <- function(fb_records_list) { } - if (page > n_pages) { + if (page == n_pages + 1) { - last_record <- page_size * n_pages + page_size <- n %% page_size - if (identical(last_record, n)) { - - break - - } - - page_size <- get_next_lowest_factor(last_record, n %% page_size) - - page <- last_record / page_size + } - page <- page + 1L + if (page == n_pages + 2 || page_size == 0) { - n_pages <- n %/% page_size + break } diff --git a/R/utils.R b/R/utils.R index 06b922f6..d8daa3ca 100644 --- a/R/utils.R +++ b/R/utils.R @@ -2,29 +2,6 @@ #' @noRd -get_next_lowest_factor <- function( - x, - y -) { - - x <- as.integer(x) - - y <- as.integer(y) - - if (identical(x %% y, 0L)) { - - return(y) - - } - - y <- y - 1L - - get_next_lowest_factor(x, y) - -} - -#' @noRd - get_el_recurse <- function( obj, nms, diff --git a/tests/cassettes/finbif_get_all.yml b/tests/cassettes/finbif_get_all.yml index 9fb0caf1..2ebefa07 100644 --- a/tests/cassettes/finbif_get_all.yml +++ b/tests/cassettes/finbif_get_all.yml @@ -30,5 +30,38 @@ http_interactions: encoding: '' file: no string: '{"currentPage":1,"lastPage":1,"pageSize":1000,"total":2,"results":[{"unit":{"unitId":"http://mus.utu.fi/MY.2475121"}},{"unit":{"unitId":"http://mus.utu.fi/MY.2475184"}}]}' - recorded_at: 2023-09-28 13:16:10 GMT + recorded_at: 2023-10-26 05:29:07 GMT + recorded_with: vcr/1.2.2, webmockr/0.9.0 +- request: + method: get + uri: https://apitest.laji.fi/v0/warehouse/query/unit/list?collectionId=HR.778&selected=unit.unitId&page=1&pageSize=100&access_token= + body: + encoding: '' + string: '' + headers: + Content-Type: '' + Accept: application/json + response: + status: + status_code: 200 + category: Success + reason: OK + message: 'Success: (200) OK' + headers: + date: Thu, 26 Oct 2023 05:29:06 GMT + content-type: application/json;charset=utf-8 + transfer-encoding: chunked + access-control-allow-origin: '*' + via: 1.0 staging.laji.fi + cache-control: no-store + x-frame-options: DENY + x-xss-protection: 1;mode=block + x-content-type-options: nosniff + strict-transport-security: max-age=31536000;includeSubDomains;preload + referrer-policy: no-referrer-when-downgrade + body: + encoding: '' + file: no + string: '{"currentPage":1,"lastPage":1,"pageSize":100,"total":2,"results":[{"unit":{"unitId":"http://mus.utu.fi/MY.2475121"}},{"unit":{"unitId":"http://mus.utu.fi/MY.2475184"}}]}' + recorded_at: 2023-10-26 05:29:07 GMT recorded_with: vcr/1.2.2, webmockr/0.9.0 diff --git a/tests/cassettes/finbif_occurrence.yml b/tests/cassettes/finbif_occurrence.yml index 1fe752e7..481bb378 100644 --- a/tests/cassettes/finbif_occurrence.yml +++ b/tests/cassettes/finbif_occurrence.yml @@ -30,7 +30,7 @@ http_interactions: encoding: '' file: no string: '{"currentPage":1,"nextPage":2,"lastPage":3,"pageSize":10,"total":22,"results":[{"unit":{"unitId":"http://tun.fi/HR.5012/E38685F9-1A68-4D87-B10C-DA319E23EF75_U"},"gathering":{"interpretations":{"finnishMunicipality":"http://tun.fi/ML.604"}}},{"unit":{"unitId":"http://tun.fi/KE.8_1214106#23"},"gathering":{"interpretations":{"finnishMunicipality":"http://tun.fi/ML.508"}}},{"unit":{"unitId":"http://tun.fi/MHU.29984670"},"gathering":{"interpretations":{"finnishMunicipality":"http://tun.fi/ML.494"}}},{"unit":{"unitId":"http://tun.fi/HR.3211/62574967-U"},"gathering":{"interpretations":{"finnishMunicipality":"http://tun.fi/ML.494"}}},{"unit":{"unitId":"http://tun.fi/MY.183468"}},{"unit":{"unitId":"http://tun.fi/KE.921/LGE.260965/666290"},"gathering":{"interpretations":{"finnishMunicipality":"http://tun.fi/ML.595"}}},{"unit":{"unitId":"http://tun.fi/MY.183462"}},{"unit":{"unitId":"http://tun.fi/MY.3079295"},"gathering":{"interpretations":{"finnishMunicipality":"http://tun.fi/ML.607"}}},{"unit":{"unitId":"http://tun.fi/KE.921/LGE.260969/657988"}},{"unit":{"unitId":"http://tun.fi/MY.3079271"},"gathering":{"interpretations":{"finnishMunicipality":"http://tun.fi/ML.593"}}}]}' - recorded_at: 2023-09-28 13:15:54 GMT + recorded_at: 2023-10-26 05:28:58 GMT recorded_with: vcr/1.2.2, webmockr/0.9.0 - request: method: get @@ -72,7 +72,7 @@ http_interactions: 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volans","unitId":"http://id.luomus.fi/MY.6590732"},"gathering":{"conversions":{"day":27,"month":9,"wgs84CenterPoint":{"lat":60.671236,"lon":25.285379}},"eventDate":{"begin":"2005-09-27","end":"2005-09-27"},"interpretations":{"coordinateAccuracy":50000}},"document":{"sourceId":"http://tun.fi/KE.3"}},{"unit":{"interpretations":{"individualCount":1,"needsCheck":false,"needsIdentification":false,"recordQuality":"NEUTRAL","reliability":"UNDEFINED"},"linkings":{"taxon":{"scientificName":"Pteromys volans","scientificNameAuthorship":"(Linnaeus, 1758)"}},"quality":{"documentGatheringUnitQualityIssues":false},"taxonVerbatim":"Pteromys volans","unitId":"http://tun.fi/KE.921/LGE.323763/766420"},"gathering":{"conversions":{"wgs84CenterPoint":{"lat":60.22947,"lon":24.603551}},"eventDate":{"begin":"2007-01-01","end":"2007-12-31"},"interpretations":{"coordinateAccuracy":1}},"document":{"sourceId":"http://tun.fi/KE.921"}}]}' - recorded_at: 2023-09-28 13:15:54 GMT + recorded_at: 2023-10-26 05:28:58 GMT recorded_with: vcr/1.2.2, webmockr/0.9.0 - request: method: get @@ -4195,7 +4195,7 @@ http_interactions: volans","unitId":"http://tun.fi/KE.921/LGE.242024/391447"},"gathering":{"conversions":{"day":3,"month":4,"wgs84CenterPoint":{"lat":60.227053,"lon":24.611511}},"eventDate":{"begin":"2015-04-03","end":"2015-04-03"},"interpretations":{"coordinateAccuracy":1}},"document":{"sourceId":"http://tun.fi/KE.921"}},{"unit":{"interpretations":{"individualCount":1,"needsCheck":false,"needsIdentification":false,"recordQuality":"NEUTRAL","reliability":"UNDEFINED"},"linkings":{"taxon":{"scientificName":"Pteromys volans","scientificNameAuthorship":"(Linnaeus, 1758)"}},"quality":{"documentGatheringUnitQualityIssues":false},"taxonVerbatim":"Pteromys 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recorded_with: vcr/1.2.2, webmockr/0.9.0 - request: method: get @@ -14932,7 +14932,7 @@ http_interactions: volans","unitId":"http://tun.fi/KE.921/LGE.160474/309897"},"gathering":{"conversions":{"wgs84CenterPoint":{"lat":60.294326,"lon":24.676294}},"eventDate":{"begin":"1900-01-01","end":"1998-12-31"},"interpretations":{"coordinateAccuracy":1}},"document":{"sourceId":"http://tun.fi/KE.921"}},{"unit":{"interpretations":{"individualCount":1,"needsCheck":false,"needsIdentification":false,"recordQuality":"NEUTRAL","reliability":"UNDEFINED"},"linkings":{"taxon":{"scientificName":"Pteromys volans","scientificNameAuthorship":"(Linnaeus, 1758)"}},"quality":{"documentGatheringUnitQualityIssues":false},"taxonVerbatim":"Pteromys 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