test-python-package.yml

name: Test

on:
  pull_request:
    branches:
      - main

  schedule:
    - cron: '0 0 * * *'

env:
  CACHE_NUMBER: 0  # increase to reset cache manually

jobs:
  build:

    strategy:
      matrix:
        include:
          - os: ubuntu-latest
            label: linux-64
            prefix: /usr/share/miniconda3/envs/my-env

          # Add macOS and Windows builds here if you need them
          # - os: macos-latest
          #   label: osx-64
          #   prefix: /Users/runner/miniconda3/envs/my-env

          # - os: windows-latest
          #   label: win-64
          #   prefix: C:\Miniconda3\envs\my-env

    name: ${{ matrix.label }}
    runs-on: ${{ matrix.os }}
    steps:
      - uses: actions/checkout@v3

      - name: Setup Mambaforge
        uses: conda-incubator/setup-miniconda@v2
        with:
            miniforge-variant: Mambaforge
            miniforge-version: latest
            activate-environment: my-env
            use-mamba: true

      - name: Set cache date
        run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV

      - uses: actions/cache@v2
        with:
          path: ${{ matrix.prefix }}
          key: ${{ matrix.label }}-conda-${{ hashFiles('environment.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }}
        id: cache

      - name: Update environment
        run: mamba env update -n my-env -f environment.yml
        if: steps.cache.outputs.cache-hit != 'true'

      - name: Install flake8
        run: |
          conda install -n my-env flake8

      - name: Lint with flake8
        shell: bash -l {0}
        run: |
          # stop the build if there are Python syntax errors or undefined names
          # Ignore scripts folder as mainly archived scripts
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude ./scripts
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude ./scripts

      - name: Install pytest
        run: conda install -n my-env pytest

      - name: Activate environment
        shell: bash -l {0}
        run: conda activate my-env

      - name: Install document-issue
        shell: bash -l {0}
        run: pip install -e ./packages/document-issue

      - name: Install document-issue-io
        shell: bash -l {0}
        run: pip install -e ./packages/document-issue-io

      - name: Install document-issue-api
        shell: bash -l {0}
        run: pip install -e ./packages/document-issue-api

      - name: Install tinytex
        shell: bash -l {0}
        run: quarto install tinytex

      - name: Run document-issue tests
        working-directory: ./packages/document-issue
        shell: bash -l {0}
        run: pytest ./tests

      - name: Run document-issue-io tests
        working-directory: ./packages/document-issue-io
        shell: bash -l {0}
        run: pytest ./tests

      - name: Run document-issue-api tests
        working-directory: ./packages/document-issue-api
        shell: bash -l {0}
        run: pytest ./tests