Skip to content

Latest commit

 

History

History
38 lines (33 loc) · 1.21 KB

README.md

File metadata and controls

38 lines (33 loc) · 1.21 KB
Raw

Installation

You need to have a installed and running docker environment and be a member of the docker group.

  1. Get this repo
git clone https://github.com/meier-rene/MSConvertGUI-docker
cd MSConvertGUI-docker
  1. Create the container image
docker build --rm -t msconvertgui .
  1. Allow local X11 connections from root
xhost +local:root
  1. Run the container
docker run --rm -v /tmp/.X11-unix:/tmp/.X11-unix:rw -v $HOME:/data:rw msconvertgui

Substitute $HOME with the directory holding your data. The directory is mounted at /data in your container, which is accessible as Z:\data in MSConvertGUI.

Testing commandline msconvert.exe (which fails on Thermo RAW data)

This container can be used in a similar way to test the msconvert.exe program. A suitable command would be

docker run --rm -v /tmp/.X11-unix:/tmp/.X11-unix:rw -v $HOME:/data:rw \
  msconvertgui /bin/bash -c "cd /data; wine msconvert small.RAW"

if your data file small.RAW is directly in the exposed folder.

Another option is of course to enter a interactive shell with

docker run -ti -v /tmp/.X11-unix:/tmp/.X11-unix:rw -v $HOME::/data:rw \
  msconvertgui /bin/bash

and issue a wine msconvert <data_file> manually.