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Question on: merge.group #90
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You could do this with bash commands like
This will use the file name (except for the |
@pschloss, perhaps this would be a good place for some enhancements?
mothur > make.file(inputdir=./, type=fasta) |
I like that - good idea!
Pat
…On Mon, Aug 8, 2022 at 9:17 AM Sarah Westcott ***@***.***> wrote:
@pschloss <https://github.com/pschloss>, perhaps this would be a good
place for some enhancements?
1. Modify make.file so it could look for fasta files in a folder, and
generate a file that could be used with the make.group command.
2. Add the file option to make.group
mothur > make.file(inputdir=./, type=fasta)
mothur > make.group(file=current)
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Hi, I am working on mothur for processing my data. I need to make a following command for several samples.
make.group(fasta=sample1.fasta-sample2.fasta-sample3.fasta, groups=A-B-C)
I find it difficult to type 351 sample names in the above command. Could you give me any pointer on it to proceed for multiple samples?
I am working on high performance computing remote server.
Thanks in advance!
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