From cd471d9dedd33960029b4945119f677e2066c890 Mon Sep 17 00:00:00 2001 From: Li Song Date: Sat, 6 Jul 2024 23:53:19 -0400 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index d1422e2..e64a7d8 100644 --- a/README.md +++ b/README.md @@ -45,7 +45,7 @@ Centrifuger is also available from [Bioconda](https://anaconda.org/bioconda/cent --offrate INT: SA/offset is sampled every (2^) BWT chars [4] --subset-tax INT: only consider the subset of input genomes under taxonomy node [0] -An example of pre-built index containing human, bacteria, archea, and virus genomes from RefSeq plus SARS-CoV-2 variants from GenBank is available at [Zenodo](https://zenodo.org/records/10023239). The default --bmax and --dcv option may be inefficient for building indexes for larger genome databases, please use --build-mem option to specify the rough estimation of the available memory. +An example of pre-built index containing human, bacteria, archea, and virus genomes from RefSeq plus SARS-CoV-2 variants from GenBank is available at [Zenodo](https://zenodo.org/records/10023239). Another pre-built index for [GTDB](https://gtdb.ecogenomic.org/) r220 is available at [Dropbox](https://www.dropbox.com/scl/fo/wtsermtdd62n1ttryuhwv/ADWTYiJA6Dh5gdbHmwC2nfo?rlkey=fgdpthjukcj1uhsjrcv35j927&dl=0). The default --bmax and --dcv option may be inefficient for building indexes for larger genome databases, please use --build-mem option to specify the rough estimation of the available memory. #### Classification