copy_conditions.py

# -*- coding: utf-8 -*-
"""
    A transfer script of the files of the conditions and movement regressors
    from the eprime mat folder to the MID/MAT file
"""
import os, shutil

BASE_DIR = os.path.join('eprime_files_caiman', 'mat')
DST_BASE_DIR = os.path.join('/', 'shfj', 'Ppsypim', 'CAIMAN', 'Subjects')

for f in os.listdir(BASE_DIR):
    fpath = os.path.join(BASE_DIR, f)
    subject_id = f.split('_')[0]
    dst_dir = os.path.join(DST_BASE_DIR, subject_id, 'MRI', 'MID')
    if os.path.isdir(dst_dir):
        print subject_id
        analysis_dir = os.path.join(dst_dir, 'ANALYSIS')
        dst_dir = os.path.join(dst_dir, 'MAT')
        if os.path.isdir(os.path.join(dst_dir, 'ANALYSIS')):
            shutil.rmtree(os.path.join(dst_dir, 'ANALYSIS'))

        if not os.path.isdir(analysis_dir):
            #os.mkdir(dst_dir)
            os.mkdir(analysis_dir)
        # copy reg mat
        shutil.copyfile(fpath, os.path.join(dst_dir, f))
        #print os.path.join(dst_dir, f)
        if os.path.splitext(f)[1]=='.xlsx':
            os.remove(os.path.join(dst_dir, f))
        if  os.path.isfile(os.path.join(dst_dir,
                                        '_'.join([subject_id, 'cond.mat']))):
            os.remove(os.path.join(dst_dir,
                                        '_'.join([subject_id, 'cond.mat'])))