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merge.yaml
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merge.yaml
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---
configuration:
output_directory: data/merged
checkpoint: false
merged_graph:
name: KG-Bioportal-04042022
source:
s1:
name: "ABA-AMB"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ABA-AMB/ABA-AMB_1_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ABA-AMB/ABA-AMB_1_edges.tsv
s2:
name: "ACGT-MO"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ACGT-MO/ACGT-MO_2_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ACGT-MO/ACGT-MO_2_edges.tsv
s3:
name: "AD-DROP"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/AD-DROP/AD-DROP_1_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/AD-DROP/AD-DROP_1_edges.tsv
s4:
name: "ADCAD"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ADCAD/ADCAD_1_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ADCAD/ADCAD_1_edges.tsv
s5:
name: "ADHER_INTCARE_EN"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ADHER_INTCARE_EN/ADHER_INTCARE_EN_1_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ADHER_INTCARE_EN/ADHER_INTCARE_EN_1_edges.tsv
s6:
name: "ADHER_INTCARE_SP"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ADHER_INTCARE_SP/ADHER_INTCARE_SP_6_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ADHER_INTCARE_SP/ADHER_INTCARE_SP_6_edges.tsv
s7:
name: "ADMO"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ADMO/ADMO_4_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ADMO/ADMO_4_edges.tsv
s8:
name: "ADO"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ADO/ADO_3_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ADO/ADO_3_edges.tsv
s9:
name: "ADW"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/ADW/ADW_2_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/ADW/ADW_2_edges.tsv
s10:
name: "NERO"
input:
format: tsv
filename:
- ../BioPortal-to-KGX/transformed/ontologies/NERO/NERO_1_nodes.tsv
- ../BioPortal-to-KGX/transformed/ontologies/NERO/NERO_1_edges.tsv
operations:
- name: kgx.graph_operations.summarize_graph.generate_graph_stats
args:
graph_name: kg_bioportal graph
filename: merged_graph_stats.yaml
node_facet_properties:
- provided_by
edge_facet_properties:
- provided_by
- primary_knowledge_source
destination:
merged-kg-tsv:
format: tsv
compression: tar.gz
filename: merged-kg