Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Benchmarking Data Neuroglancer Skeletons are Wrong #246

Open
tathey1 opened this issue Mar 23, 2021 · 2 comments
Open

Benchmarking Data Neuroglancer Skeletons are Wrong #246

tathey1 opened this issue Mar 23, 2021 · 2 comments
Assignees

Comments

@tathey1
Copy link
Member

tathey1 commented Mar 23, 2021

Downloading benchmarking notebook shows improper traces for validation_21 with trace number 2.

We printed out "swc_string" from here, and found improper looking skeleton coordinates.

We concluded that the skeleton objects on s3 for the benchmarking data are wrong. Let's replace them with good ones.

@shreyasingh1
Copy link
Contributor

We narrowed down the issue to Cloudvolume's Skeleton.to_swc() and Skeleton.from_swc() functions, theorizing that calling these functions during the swc upload and download process changes the underlying topology of the swc file. See issue posted to CloudVolume here: seung-lab/cloud-volume#466

@github-actions
Copy link

github-actions bot commented Feb 9, 2023

Stale issue message

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants