error: Command exit status: 255 #4100
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complexgenome
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I've a variant calling step using lancet, that is processed per chromosome. When I run it gives me error:
Please see following .nf file:
If I use command line lancet code runs fine for chr 1, 3:
I'm unable to debug what is going on and at which step. I understand the data are dummy and in the end 0 variants will be printed. I see no variants in CHR1 and CHR3 so far when performed on command line. However, this should be true when running through nextflow as well.
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