Running a python script that calls another script as a subprocess inside nextflow

[julia-luz]

Hello!

I'm trying to run a python program inside a simple nextflow pipeline. This script (apple.py) has an option that calls another script (banana.py) as a sub-process.

Running python apple.py (banana option) on the terminal works fine, however, inside my workflow this has the task ending successfully despite seemingly not running the banana.py sub-process. I'm not sure I understand why this is happening - is the task being considered done even though apples.py has a running python sub-process (bananas.py)? If so, any tips on how I can work around this?