From 92f3f907eeda46ce6972aeffb3e1e383b640ff19 Mon Sep 17 00:00:00 2001 From: Jon Palmer Date: Mon, 29 Jan 2018 09:23:22 -0500 Subject: [PATCH] drop braker in docker build --- dockerbuild/Dockerfile-base | 3 --- 1 file changed, 3 deletions(-) diff --git a/dockerbuild/Dockerfile-base b/dockerbuild/Dockerfile-base index 123c3770..85587d7e 100644 --- a/dockerbuild/Dockerfile-base +++ b/dockerbuild/Dockerfile-base @@ -21,7 +21,6 @@ ENV PATH=/home/linuxbrew:/home/linuxbrew/funannotate:/home/linuxbrew/conda/bin:/ COPY repeatmodeler.txt \ repeatmasker.txt \ phobius.tar.gz \ - funannotate-braker.tar.gz \ funannotate-genemark.tar.gz \ /home/linuxbrew/ @@ -70,8 +69,6 @@ RUN wget --quiet https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86 wget http://bioinf.uni-greifswald.de/augustus/binaries/old/augustus-3.2.3.tar.gz && \ tar -zxvf augustus-3.2.3.tar.gz && rm augustus-3.2.3.tar.gz && mv augustus-3.2.3 augustus && \ cd augustus && make clean && make && cd /home/linuxbrew/ && \ - tar -zxvf funannotate-braker.tar.gz && mv BRAKER_v2.0 braker && \ - ln -s /home/linuxbrew/braker/filterGenemark.pl /home/linuxbrew/augustus/scripts/ && \ wget https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.5.1.tar.gz && \ tar -zxvf Trinity-v2.5.1.tar.gz && rm Trinity-v2.5.1.tar.gz && \ mv trinityrnaseq-Trinity-v2.5.1 Trinity && cd Trinity && make && make plugins && cd /home/linuxbrew/ && \