From 5619352aeca70100d25191d0feccb349e1783a5d Mon Sep 17 00:00:00 2001
From: "Carson J. Miller" <carsonjmiller@outlook.com>
Date: Tue, 23 Jul 2024 12:22:04 -0700
Subject: [PATCH] Add tests/nextflow.config

---
 tests/nextflow.config | 64 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 64 insertions(+)
 create mode 100644 tests/nextflow.config

diff --git a/tests/nextflow.config b/tests/nextflow.config
new file mode 100644
index 00000000..478cf7d1
--- /dev/null
+++ b/tests/nextflow.config
@@ -0,0 +1,64 @@
+params {
+    // Base directory for nf-core/modules test data
+    modules_testdata_base_path = 's3://ngi-igenomes/testdata/nf-core/modules/'
+
+    // Base directory for nf-core/fetchngs test data
+    pipelines_testdata_base_path = 's3://ngi-igenomes/testdata/nf-core/pipelines/fetchngs/1.15.0/'
+
+    max_cpus    = 4
+    max_memory  = '12.GB'
+    time        = '2.h'
+}
+
+// Impose sensible resource limits for testing
+process {
+    withName: BOWTIE2_PHIX_REMOVAL_ALIGN {
+        cpus   = 1
+        memory = 12.GB
+        time   = 2.h
+    }
+
+    withName: CENTRIFUGE_CENTRIFUGE {
+        cpus   = 1
+        memory = 12.GB
+        time   = 2.h
+    }
+
+    withName: BOWTIE2_ASSEMBLY_ALIGN {
+        cpus   = 1
+        memory = 12.GB
+        time   = 2.h
+    }
+
+    withName: METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS {
+        cpus   = 1
+        memory = 12.GB
+        time   = 2.h
+    }
+
+    withName: QUAST_BINS {
+        cpus   = 1
+        memory = 12.GB
+        time   = 2.h
+    }
+
+    withName: METABAT2_METABAT2 {
+        cpus   = 1
+        memory = 12.GB
+        time   = 2.h
+    }
+}
+
+// Impose same minimum Nextflow version as the pipeline for testing
+manifest {
+    nextflowVersion = '!>=23.04.0'
+}
+
+// Disable all Nextflow reporting options
+timeline { enabled = false }
+report   { enabled = false }
+trace    { enabled = true }
+dag      { enabled = false }
+
+// Load modules test_data.config
+includeConfig 'https://github.com/nf-core/modules/raw/master/tests/config/test_data.config'