From e6fc384456d626263922323681d49545d66b3ea8 Mon Sep 17 00:00:00 2001 From: Sateesh Date: Tue, 22 Oct 2024 04:56:38 +0000 Subject: [PATCH 1/2] update spacing in nextflow.config to test nf-test trigger --- nextflow.config | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/nextflow.config b/nextflow.config index a5e2efe6..af2a040e 100644 --- a/nextflow.config +++ b/nextflow.config @@ -102,16 +102,16 @@ params { pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/methylseq' // Config options - config_profile_name = null - config_profile_description = null + config_profile_name = null + config_profile_description = null - custom_config_version = 'master' - custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}" - config_profile_contact = null - config_profile_url = null + custom_config_version = 'master' + custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}" + config_profile_contact = null + config_profile_url = null // Schema validation default options - validate_params = true + validate_params = true } // Load base.config by default for all pipelines From 6f3beecb7c205692d23fe3ea68239a6c79f98f15 Mon Sep 17 00:00:00 2001 From: Sateesh Date: Tue, 22 Oct 2024 05:11:59 +0000 Subject: [PATCH 2/2] update CI --- .github/workflows/ci.yml | 6 ------ 1 file changed, 6 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 147894af..e7b71537 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -50,12 +50,6 @@ jobs: profile: "conda" - isMaster: false profile: "singularity" - - profile: "conda" - nf_test_files: "tests/bwameth_save_reference_save_align_intermeds.nf.test" - - profile: "conda" - nf_test_files: "tests/bwameth_skip_trimming.nf.test" - - profile: "conda" - nf_test_files: "tests/bwameth_skip_deduplication.nf.test" steps: - name: Check out pipeline code uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4