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methylKit-compatible files are not copied to publishDir #354

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ltosti-tagomics opened this issue Oct 26, 2023 · 0 comments · Fixed by #357
Closed

methylKit-compatible files are not copied to publishDir #354

ltosti-tagomics opened this issue Oct 26, 2023 · 0 comments · Fixed by #357
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bug Something isn't working
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2.6.0

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Description of the bug

When running the methylseq pipeline and using --methyl_kit in the bwa-meth options, the .methylKit files are not copied to the publishDir. This is due to the .methylKit files not being specified in the modules.config file:

methylseq/conf/modules.config

Line 420 in 66c6138

pattern: "*.bedGraph"

Command used and terminal output

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Relevant files

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@ltosti-tagomics ltosti-tagomics added the bug Something isn't working label Oct 26, 2023
ltosti-tagomics added a commit to ltosti-tagomics/methylseq that referenced this issue Oct 26, 2023
@ltosti-tagomics
fix for bug nf-core#354
56078b8
@ltosti-tagomics ltosti-tagomics mentioned this issue Oct 26, 2023
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@edmundmiller edmundmiller linked a pull request Oct 30, 2023 that will close this issue
fix for bug #354 #355
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10 tasks
@edmundmiller edmundmiller added this to the 2.6.0 milestone Oct 30, 2023
ltosti-tagomics added a commit to Tagomics/methylseq that referenced this issue Oct 31, 2023
@ltosti-tagomics
fix for bug nf-core#354 - dev branch
6cb25ee
@ltosti-tagomics ltosti-tagomics mentioned this issue Oct 31, 2023
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@sateeshperi sateeshperi linked a pull request Oct 31, 2023 that will close this issue
Copy methylKit-compatible files to publishDir #357
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10 tasks
@edmundmiller edmundmiller mentioned this issue Jan 9, 2024
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@edmundmiller @ltosti-tagomics