From f71409a9afe9aa92213eaa6d00742ebe9d127efd Mon Sep 17 00:00:00 2001
From: James Fellows Yates <jfy133@gmail.com>
Date: Thu, 27 Jul 2023 13:47:53 +0200
Subject: [PATCH] Add missing args

---
 modules/nf-core/centrifuge/centrifuge/main.nf | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/modules/nf-core/centrifuge/centrifuge/main.nf b/modules/nf-core/centrifuge/centrifuge/main.nf
index 29f851174c7..6e45ba4e3f3 100644
--- a/modules/nf-core/centrifuge/centrifuge/main.nf
+++ b/modules/nf-core/centrifuge/centrifuge/main.nf
@@ -47,7 +47,8 @@ process CENTRIFUGE_CENTRIFUGE {
         --report-file ${prefix}.report.txt \\
         -S ${prefix}.results.txt \\
         $unaligned \\
-        $aligned
+        $aligned \\
+        $args
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":