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new module: Segger #6845

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4 tasks done
khersameesh24 opened this issue Oct 25, 2024 · 1 comment
Open
4 tasks done

new module: Segger #6845

khersameesh24 opened this issue Oct 25, 2024 · 1 comment
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new module Adding a new module

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@khersameesh24
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Is there an existing module for this?

  • I have searched for the existing module

Is there an open PR for this?

  • I have searched for existing PRs

Is there an open issue for this?

  • I have searched for existing issues

Further Information

New module for segger has to be built for the segmentation (refinement) step for the spatialxe pipeline.
Segger

other items: bioconda receipe, docker container, handling segger config file & testdata update at test-data/spatialxe/data.zip

Are you going to work on this?

  • If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module
@Tobiaspk
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Tobiaspk commented Oct 28, 2024

Started drafting a segger implementation to nf-core here, incl structured processes, parameter and function descriptions, test and code outlines.

@khersameesh24 khersameesh24 moved this from Todo to In Progress in Hackathon October 2024 Oct 29, 2024
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