From dac911103e259ba9553eab71a6a321b6cb3ea56d Mon Sep 17 00:00:00 2001
From: Edmund Miller <git@edmundmiller.dev>
Date: Fri, 8 Nov 2024 16:13:11 -0600
Subject: [PATCH] test: flatten => toSortedList to make the order of beds
 consistant for snapshots

---
 subworkflows/local/transcript_identification/main.nf | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/subworkflows/local/transcript_identification/main.nf b/subworkflows/local/transcript_identification/main.nf
index d7fb9f38..e363ba0d 100644
--- a/subworkflows/local/transcript_identification/main.nf
+++ b/subworkflows/local/transcript_identification/main.nf
@@ -61,9 +61,10 @@ workflow TRANSCRIPT_INDENTIFICATION {
     // TODO Tests don't seem to hit this because there's no bidirectional_TREs
     // Need to collect all of the beds for each chromosome/sample and concatenate them
     // Nextflow makes this super easy
-    def ch_bidirectional_TREs = PINTS_CALLER.out.unidirectional_TREs
-        .groupTuple(by: [0])
-        .map { meta, beds -> [meta, beds.flatten()] }
+    def ch_bidirectional_TREs =
+        PINTS_CALLER.out.unidirectional_TREs.groupTuple(by: [0]).map { meta, beds ->
+        [meta, beds.toSortedList()]
+    }
 
     // HACK Not sure if this is as good as reporting all of them, but it should
     // reduce the overall noise.