From c911f710e0b2fc4f3bb9cdaf10791f3ebc421314 Mon Sep 17 00:00:00 2001 From: Austyn Trull Date: Wed, 4 Oct 2023 11:49:36 -0500 Subject: [PATCH] Fixing formatting that was causing issues with linting --- assets/multiqc_config.yml | 42 +++++++++++++++++++-------------------- 1 file changed, 20 insertions(+), 22 deletions(-) diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 8c62b93..4306b66 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,16 +1,25 @@ report_comment: > - This report has been generated by the nf-core/scnanoseq + This report has been generated by the nf-core/scnanoseq analysis pipeline. For information about how to interpret these results, please see the - documentation. -report_section_order: - "nf-core-scnanoseq-methods-description": - order: -1000 - software_versions: - order: -1001 - "nf-core-scnanoseq-summary": - order: -1002 + documentation. -log_filesize_limit: 100000000 +report_section_order: + "nf-core-scnanoseq-methods-description": + order: -1000 + software_versions: + order: -1001 + "nf-core-scnanoseq-summary": + order: -1002 + fastqc_postextract_fastqc_per_base_sequence_quality: remove + fastqc_postextract_fastqc_per_sequence_quality_scores: remove + fastqc_postextract_fastqc_per_base_sequence_content: remove + fastqc_postextract_fastqc_per_sequence_gc_content: remove + fastqc_postextract_fastqc_per_base_n_content: remove + fastqc_postextract_fastqc_sequence_length_distribution: remove + fastqc_postextract_fastqc_sequence_duplication_levels: remove + fastqc_postextract_fastqc_overrepresented_sequences: remove + fastqc_postextract_fastqc_adapter_content: remove + fastqc_postextract_fastqc_status_checks: remove export_plots: true @@ -39,18 +48,6 @@ top_modules: path_filters: - "*umi_extract*fastqc*" -report_section_order: - fastqc_postextract_fastqc_per_base_sequence_quality: remove - fastqc_postextract_fastqc_per_sequence_quality_scores: remove - fastqc_postextract_fastqc_per_base_sequence_content: remove - fastqc_postextract_fastqc_per_sequence_gc_content: remove - fastqc_postextract_fastqc_per_base_n_content: remove - fastqc_postextract_fastqc_sequence_length_distribution: remove - fastqc_postextract_fastqc_sequence_duplication_levels: remove - fastqc_postextract_fastqc_overrepresented_sequences: remove - fastqc_postextract_fastqc_adapter_content: remove - fastqc_postextract_fastqc_status_checks: remove - section_comments: fastqc_posttrim: "Please note that if 'prowler' is selected as the trimming method, these qc's should be looked at closely. Prowler does not @@ -93,3 +90,4 @@ sp: fn: "gene.*.tsv" transcript_seurat_stats_module: fn: "transcript.*.tsv" +