diff --git a/docs/images/taxprofiler_tube.pdf b/docs/images/taxprofiler_tube.pdf
index b3550c36..a90aa4a0 100644
Binary files a/docs/images/taxprofiler_tube.pdf and b/docs/images/taxprofiler_tube.pdf differ
diff --git a/docs/images/taxprofiler_tube.png b/docs/images/taxprofiler_tube.png
index b5363e39..4af7a1e7 100644
Binary files a/docs/images/taxprofiler_tube.png and b/docs/images/taxprofiler_tube.png differ
diff --git a/docs/images/taxprofiler_tube.svg b/docs/images/taxprofiler_tube.svg
index e8e6fc4f..f13e193b 100644
--- a/docs/images/taxprofiler_tube.svg
+++ b/docs/images/taxprofiler_tube.svg
@@ -26,7 +26,7 @@
inkscape:pageopacity="0.0"
inkscape:pagecheckerboard="true"
inkscape:document-units="mm"
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+ showgrid="false"
inkscape:snap-bbox="true"
inkscape:bbox-nodes="true"
inkscape:snap-bbox-edge-midpoints="false"
@@ -36,9 +36,9 @@
fit-margin-left="0"
fit-margin-right="0"
fit-margin-bottom="0"
- inkscape:zoom="1.4206694"
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+ inkscape:zoom="1.0377583"
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@@ -55,7 +55,7 @@
spacingy="1"
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- visible="true" />SEQUENCING(SEQUENCINGQUALITY CONTROLQUALITY CONTROL)FILTERING)(COVERAGEESTIMATION)(HOST REMOVAL)(ADAPTER TRIMMING & MERGING)(HOST REMOVAL)TAXONOMIC CLASSIFICATIONcatminimap2samtools statssamtoolsstatsFiltlongnanoqFiltlongKrona(Krona)PorechopPorechop_ABIPorechop(LENGTH FILTERING)(LENGTH FILTERING)v1.2v1.2
+ sodipodi:nodetypes="cc" />
diff --git a/docs/usage.md b/docs/usage.md
index ad735151..34ffcb46 100644
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -276,7 +276,7 @@ Before using this tool please note the following caveats:
- It is not recommended to keep unmerged (`--shortread_qc_includeunmerged`) reads when using the calculation.
- Your shortest reads _after_ processing should not go below 24bp
- If the 'kmer' value is not correct, make sure your shortest reads _after_ processing is not less than 24bp.
+ If the 'kmer' value is not correct, make sure your shortest reads _after_ processing is not less than 24bp.
If this is the case you will need to specify in a custom config
@@ -289,6 +289,7 @@ Before using this tool please note the following caveats:
```
Where `` should be at least the shortest read in your library
+
:::
#### Complexity Filtering