diff --git a/.cache.tar.xz b/.cache.tar.xz
index ddf253f41a..0c5c5ee79c 100644
Binary files a/.cache.tar.xz and b/.cache.tar.xz differ
diff --git a/public/components.json b/public/components.json
index 167b304367..1c2c01abe3 100644
--- a/public/components.json
+++ b/public/components.json
@@ -150,7 +150,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -1192,7 +1192,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -1294,7 +1294,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -1373,7 +1373,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -1579,7 +1579,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -1638,7 +1638,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -2224,7 +2224,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -2317,7 +2317,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -4431,7 +4431,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -4488,7 +4488,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -7678,6 +7678,18 @@
               "type": "file",
               "description": "Optional, file of sample names to be included or excluded.\ne.g. 'file.tsv'\n"
             }
+          },
+          {
+            "exons": {
+              "type": "file",
+              "description": "Tab-delimited file with exons for indel frameshifts (chr,beg,end; 1-based, inclusive, optionally bgzip compressed).\ne.g. 'exons.tsv.gz'\n"
+            }
+          },
+          {
+            "fasta": {
+              "type": "file",
+              "description": "Faidx indexed reference sequence file to determine INDEL context.\ne.g. 'reference.fa'\n"
+            }
           }
         ],
         "output": [
@@ -7705,7 +7717,8 @@
         "authors": [
           "@joseespinosa",
           "@drpatelh",
-          "@SusiJo"
+          "@SusiJo",
+          "@TCLamnidis"
         ]
       },
       "pipelines": [
@@ -9777,7 +9790,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -19323,7 +19336,7 @@
         },
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "genomeannotator",
@@ -20657,7 +20670,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -20771,7 +20784,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -20829,7 +20842,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
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@@ -20977,7 +20990,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
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@@ -25741,7 +25754,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
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@@ -26459,7 +26472,7 @@
         },
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "genomeannotator",
@@ -36661,7 +36674,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
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@@ -41464,7 +41477,7 @@
         },
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "genomeannotator",
@@ -41687,7 +41700,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
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@@ -41789,7 +41802,7 @@
       "pipelines": [
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-          "version": "1.1.2"
+          "version": "1.1.3"
         }
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@@ -41891,7 +41904,7 @@
       "pipelines": [
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           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
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@@ -41993,7 +42006,7 @@
       "pipelines": [
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-          "version": "1.1.2"
+          "version": "1.1.3"
         }
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@@ -42095,7 +42108,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
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@@ -42177,7 +42190,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -44244,7 +44257,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "metatdenovo",
@@ -50974,7 +50987,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -58420,7 +58433,7 @@
         },
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "genomeannotator",
@@ -68055,7 +68068,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "mag",
@@ -68231,7 +68244,7 @@
         },
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "mag",
@@ -69672,7 +69685,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -70484,7 +70497,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         }
       ]
     },
@@ -76696,6 +76709,155 @@
         ]
       }
     },
+    {
+      "name": "sentieon_dnascope",
+      "path": "modules/nf-core/sentieon/dnascope/meta.yml",
+      "type": "module",
+      "meta": {
+        "name": "sentieon_dnascope",
+        "description": "DNAscope algorithm performs an improved version of Haplotype variant calling.",
+        "keywords": [
+          "dnascope",
+          "sentieon",
+          "variant_calling"
+        ],
+        "tools": [
+          {
+            "sentieon": {
+              "description": "Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads.\nOur software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.\n",
+              "homepage": "https://www.sentieon.com/",
+              "documentation": "https://www.sentieon.com/"
+            }
+          }
+        ],
+        "input": [
+          {
+            "meta": {
+              "type": "map",
+              "description": "Groovy Map containing sample information.\ne.g. [ id:'test', single_end:false ]\n"
+            }
+          },
+          {
+            "meta2": {
+              "type": "map",
+              "description": "Groovy Map containing reference information.\ne.g. [ id:'test' ]\n"
+            }
+          },
+          {
+            "meta3": {
+              "type": "map",
+              "description": "Groovy Map containing reference information.\ne.g. [ id:'test' ]\n"
+            }
+          },
+          {
+            "meta4": {
+              "type": "map",
+              "description": "Groovy Map containing reference information.\ne.g. [ id:'test' ]\n"
+            }
+          },
+          {
+            "meta5": {
+              "type": "map",
+              "description": "Groovy Map containing reference information.\ne.g. [ id:'test' ]\n"
+            }
+          },
+          {
+            "meta6": {
+              "type": "map",
+              "description": "Groovy Map containing reference information.\ne.g. [ id:'test' ]\n"
+            }
+          },
+          {
+            "bam": {
+              "type": "file",
+              "description": "BAM file.",
+              "pattern": "*.bam"
+            }
+          },
+          {
+            "bai": {
+              "type": "file",
+              "description": "BAI file",
+              "pattern": "*.bai"
+            }
+          },
+          {
+            "fasta": {
+              "type": "file",
+              "description": "Genome fasta file",
+              "pattern": "*.{fa,fasta}"
+            }
+          },
+          {
+            "fai": {
+              "type": "file",
+              "description": "Index of the genome fasta file",
+              "pattern": "*.fai"
+            }
+          },
+          {
+            "dbsnp": {
+              "type": "file",
+              "description": "Single Nucleotide Polymorphism database (dbSNP) file",
+              "pattern": "*.vcf.gz"
+            }
+          },
+          {
+            "dbsnp_tbi": {
+              "type": "file",
+              "description": "Index of the Single Nucleotide Polymorphism database (dbSNP) file",
+              "pattern": "*.vcf.gz.tbi"
+            }
+          },
+          {
+            "call_interval": {
+              "type": "file",
+              "description": "bed or interval_list file containing interval in the reference that will be used in the analysis",
+              "pattern": "*.{bed,interval_list}"
+            }
+          },
+          {
+            "ml_model": {
+              "type": "file",
+              "description": "machine learning model file",
+              "pattern": "*.model"
+            }
+          }
+        ],
+        "output": [
+          {
+            "meta": {
+              "type": "map",
+              "description": "Groovy Map containing reference information.\ne.g. [ id:'test', single_end:false ]\n"
+            }
+          },
+          {
+            "vcf": {
+              "type": "file",
+              "description": "VCF file",
+              "pattern": "*.{vcf.gz}"
+            }
+          },
+          {
+            "index": {
+              "type": "file",
+              "description": "Index of the VCF file",
+              "pattern": "*.vcf.gz.tbi"
+            }
+          },
+          {
+            "versions": {
+              "type": "file",
+              "description": "File containing software versions",
+              "pattern": "versions.yml"
+            }
+          }
+        ],
+        "authors": [
+          "@ramprasadn"
+        ]
+      }
+    },
     {
       "name": "sentieon_gvcftyper",
       "path": "modules/nf-core/sentieon/gvcftyper/meta.yml",
@@ -80850,7 +81012,7 @@
             }
           },
           {
-            "bam": {
+            "inputs": {
               "type": "file",
               "description": "Any input file required by Snakemake",
               "pattern": "*"
@@ -85981,7 +86143,7 @@
       "pipelines": [
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "nanoseq",
@@ -88804,7 +88966,7 @@
         },
         {
           "name": "funcscan",
-          "version": "1.1.2"
+          "version": "1.1.3"
         },
         {
           "name": "hgtseq",
@@ -88938,7 +89100,9 @@
         "description": "Unzip ZIP archive files",
         "keywords": [
           "unzip",
-          "decompression"
+          "decompression",
+          "zip",
+          "archiving"
         ],
         "tools": [
           {
@@ -89014,7 +89178,9 @@
         "description": "Unzip ZIP archive files",
         "keywords": [
           "unzip",
-          "decompression"
+          "decompression",
+          "zip",
+          "archiving"
         ],
         "tools": [
           {
diff --git a/public/pipelines.json b/public/pipelines.json
index cfe4db86ea..8d836b1cdc 100644
--- a/public/pipelines.json
+++ b/public/pipelines.json
@@ -285,9 +285,9 @@
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             "created_at": "2018-09-26T15:24:54Z",
             "updated_at": "2023-08-10T19:31:57Z",
-            "pushed_at": "2023-08-10T13:22:47Z",
+            "pushed_at": "2023-08-11T12:03:04Z",
             "homepage": "https://nf-co.re/ampliseq",
-            "size": 12340,
+            "size": 12376,
             "stargazers_count": 122,
             "watchers_count": 122,
             "language": "Nextflow",
@@ -300,7 +300,7 @@
             "forks_count": 80,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 17,
+            "open_issues_count": 14,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -323,12 +323,12 @@
             ],
             "visibility": "public",
             "forks": 80,
-            "open_issues": 17,
+            "open_issues": 14,
             "watchers": 122,
             "default_branch": "master",
             "network_count": 80,
             "subscribers_count": 123,
-            "open_pr_count": 3,
+            "open_pr_count": 1,
             "contributors": [
                 {
                     "name": "d4straub",
@@ -728,8 +728,8 @@
                 },
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                     "tag_name": "dev",
-                    "published_at": "2023-08-08T07:05:59Z",
-                    "tag_sha": "a70ff48db034dc1fde657d426e4724793b91992a",
+                    "published_at": "2023-08-11T11:48:36Z",
+                    "tag_sha": "c801a2109e760555d54d684eb172baed1560cfc2",
                     "has_schema": true,
                     "doc_files": [
                         "docs/output.md",
@@ -772,7 +772,7 @@
             "url": "https://api.github.com/repos/nf-core/atacseq",
             "created_at": "2018-11-05T17:49:32Z",
             "updated_at": "2023-08-07T14:28:39Z",
-            "pushed_at": "2023-08-10T16:20:18Z",
+            "pushed_at": "2023-08-11T09:17:50Z",
             "homepage": "https://nf-co.re/atacseq",
             "size": 9629,
             "stargazers_count": 143,
@@ -5247,9 +5247,9 @@
             "url": "https://api.github.com/repos/nf-core/eager",
             "created_at": "2018-06-03T15:52:24Z",
             "updated_at": "2023-08-07T17:35:30Z",
-            "pushed_at": "2023-08-09T17:17:05Z",
+            "pushed_at": "2023-08-11T11:09:08Z",
             "homepage": "https://nf-co.re/eager",
-            "size": 65004,
+            "size": 65047,
             "stargazers_count": 97,
             "watchers_count": 97,
             "language": "Nextflow",
@@ -6406,9 +6406,9 @@
             "url": "https://api.github.com/repos/nf-core/funcscan",
             "created_at": "2021-12-13T10:35:54Z",
             "updated_at": "2023-08-10T19:42:35Z",
-            "pushed_at": "2023-08-09T10:27:36Z",
+            "pushed_at": "2023-08-11T12:38:55Z",
             "homepage": "https://nf-co.re/funcscan",
-            "size": 11791,
+            "size": 11792,
             "stargazers_count": 37,
             "watchers_count": 37,
             "language": "Nextflow",
@@ -6421,7 +6421,7 @@
             "forks_count": 11,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 14,
+            "open_issues_count": 13,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -6444,21 +6444,21 @@
             ],
             "visibility": "public",
             "forks": 11,
-            "open_issues": 14,
+            "open_issues": 13,
             "watchers": 37,
             "default_branch": "master",
             "network_count": 11,
             "subscribers_count": 55,
-            "open_pr_count": 3,
+            "open_pr_count": 2,
             "contributors": [
                 {
                     "name": "jfy133",
-                    "count": 369,
+                    "count": 393,
                     "avatar_url": "https://avatars.githubusercontent.com/u/17950287?v=4"
                 },
                 {
                     "name": "jasmezz",
-                    "count": 278,
+                    "count": 304,
                     "avatar_url": "https://avatars.githubusercontent.com/u/73216762?v=4"
                 },
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@@ -6468,7 +6468,7 @@
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+                    "count": 171,
                     "avatar_url": "https://avatars.githubusercontent.com/u/44900284?v=4"
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@@ -6485,9 +6485,63 @@
                     "name": "drpatelh",
                     "count": 1,
                     "avatar_url": "https://avatars.githubusercontent.com/u/23529759?v=4"
+                },
+                {
+                    "name": "robsyme",
+                    "count": 1,
+                    "avatar_url": "https://avatars.githubusercontent.com/u/31576?v=4"
                 }
             ],
             "releases": [
+                {
+                    "tag_name": "1.1.3",
+                    "published_at": "2023-08-11T12:36:40Z",
+                    "tag_sha": "eb8f79ce5a966f5a01b398dfe7d881c04b697192",
+                    "has_schema": true,
+                    "doc_files": [
+                        "docs/output.md",
+                        "docs/usage.md"
+                    ],
+                    "components": {
+                        "modules": [
+                            "abricate_run",
+                            "ampcombi",
+                            "ampir",
+                            "amplify_predict",
+                            "amrfinderplus_run",
+                            "amrfinderplus_update",
+                            "antismash_antismashlite",
+                            "antismash_antismashlitedownloaddatabases",
+                            "bakta_bakta",
+                            "bakta_baktadbdownload",
+                            "bioawk",
+                            "custom_dumpsoftwareversions",
+                            "deeparg_downloaddata",
+                            "deeparg_predict",
+                            "deepbgc_download",
+                            "deepbgc_pipeline",
+                            "fargene",
+                            "fastqc",
+                            "gecco_run",
+                            "gunzip",
+                            "hamronization_abricate",
+                            "hamronization_amrfinderplus",
+                            "hamronization_deeparg",
+                            "hamronization_fargene",
+                            "hamronization_rgi",
+                            "hamronization_summarize",
+                            "hmmer_hmmsearch",
+                            "macrel_contigs",
+                            "multiqc",
+                            "prodigal",
+                            "prokka",
+                            "pyrodigal",
+                            "rgi_main",
+                            "tabix_bgzip",
+                            "untar"
+                        ]
+                    }
+                },
                 {
                     "tag_name": "1.1.2",
                     "published_at": "2023-06-30T06:43:37Z",
@@ -6731,8 +6785,8 @@
                 },
                 {
                     "tag_name": "dev",
-                    "published_at": "2023-08-09T10:25:02Z",
-                    "tag_sha": "352f979bee71646035688fdc6e044aa64b79ab78",
+                    "published_at": "2023-08-11T12:33:32Z",
+                    "tag_sha": "0e3d179ad0e319e9e0d16a081b35af238dcb09ee",
                     "has_schema": true,
                     "doc_files": [
                         "docs/output.md",
@@ -6791,7 +6845,7 @@
             "url": "https://api.github.com/repos/nf-core/genomeannotator",
             "created_at": "2022-02-01T12:47:25Z",
             "updated_at": "2023-07-14T21:56:01Z",
-            "pushed_at": "2023-06-30T16:12:55Z",
+            "pushed_at": "2023-08-11T07:09:29Z",
             "homepage": "https://nf-co.re/genomeannotator",
             "size": 101644,
             "stargazers_count": 10,
@@ -9034,7 +9088,7 @@
             "has_wiki": false,
             "has_pages": false,
             "has_discussions": false,
-            "forks_count": 85,
+            "forks_count": 86,
             "archived": false,
             "disabled": false,
             "open_issues_count": 41,
@@ -9052,11 +9106,11 @@
                 "nanopore-sequencing"
             ],
             "visibility": "public",
-            "forks": 85,
+            "forks": 86,
             "open_issues": 41,
             "watchers": 139,
             "default_branch": "master",
-            "network_count": 85,
+            "network_count": 86,
             "subscribers_count": 123,
             "open_pr_count": 2,
             "contributors": [
@@ -9724,13 +9778,13 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/mcmicro",
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