From bb6ef703d67a2447e74abec0ccf2aa45a5428070 Mon Sep 17 00:00:00 2001 From: Marcel Ribeiro-Dantas Date: Mon, 4 Nov 2024 18:07:04 -0300 Subject: [PATCH 1/2] Improve recommendations on publication credit --- .../guidelines/pipelines/recommendations/publication_credit.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md b/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md index c8ec5f8083..dea1c411df 100644 --- a/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md +++ b/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md @@ -16,7 +16,7 @@ All nf-core pipeline publications and presentations should cite [The nf-core fra **Optionally**, the nf-core community can be included as a consortium co-author. This option is preferred when a pipeline has made extensive use of existing nf-core pipeline components (e.g., modules and subworkflows) written by other community members who were not directly involved in the pipeline itself. For example, see hgtseq: [A Standard Pipeline to Study Horizontal Gene Transfer](https://doi.org/10.3390/ijms232314512). -If members of the nf-core community have provided significant input to the creation or maintenance of a pipeline, please consider adding them as coauthors on the pipeline publication or presentation. +If members of the nf-core community have provided significant input to the creation or maintenance of a pipeline, please consider adding them as coauthors on the pipeline publication or presentation. We also recommend transparency on working on a piece where the pipeline is a major part of it. If you plan to write a paper about a pipeline, please share this with the community on the pipeline channel on the nf-core Slack workspace so that other contributors can join your effort. If your pipeline publication or presentation is an extension of a community pipeline, please discuss authorship with the main developers. From 27c4d2b50b063e0acb5142deb19f7012adf4ba31 Mon Sep 17 00:00:00 2001 From: Marcel Ribeiro-Dantas Date: Wed, 6 Nov 2024 11:58:45 -0300 Subject: [PATCH 2/2] Update sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md Based on James and Sateesh's contributions. Co-authored-by: James A. Fellows Yates --- .../pipelines/recommendations/publication_credit.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md b/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md index dea1c411df..7d1a74f30b 100644 --- a/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md +++ b/sites/docs/src/content/docs/guidelines/pipelines/recommendations/publication_credit.md @@ -16,7 +16,9 @@ All nf-core pipeline publications and presentations should cite [The nf-core fra **Optionally**, the nf-core community can be included as a consortium co-author. This option is preferred when a pipeline has made extensive use of existing nf-core pipeline components (e.g., modules and subworkflows) written by other community members who were not directly involved in the pipeline itself. For example, see hgtseq: [A Standard Pipeline to Study Horizontal Gene Transfer](https://doi.org/10.3390/ijms232314512). -If members of the nf-core community have provided significant input to the creation or maintenance of a pipeline, please consider adding them as coauthors on the pipeline publication or presentation. We also recommend transparency on working on a piece where the pipeline is a major part of it. If you plan to write a paper about a pipeline, please share this with the community on the pipeline channel on the nf-core Slack workspace so that other contributors can join your effort. +If members of the nf-core community have provided significant input to the creation or maintenance of a pipeline, please consider adding them as coauthors on the pipeline publication or presentation. + +We also strongly recommend transparency when working on a project where the pipeline plays a significant role. If you plan to write a paper about a pipeline, please share this information prior and during writing of the manuscript with the community in the pipeline specific channel on the nf-core Slack workspace, so that other major contributors can join and support your effort. If your pipeline publication or presentation is an extension of a community pipeline, please discuss authorship with the main developers.