Problems with compilation due to read_data.cpp

[yizhwan]

Hi,

I am trying to compile BSGLMM on an UBuntu 22.04 running CUDA 11.7. compute 8.6, RTX 3090 TI.

Steps taken are:
git clone to /opt/
Modify makefile to reflect compute 86 in gencode.
I then ran make, resulting in the following errors:

read_data.cpp: In function ‘int test_ext(const char*, const char*)’:
read_data.cpp:47:11: error: declaration of ‘char* ext’ shadows a parameter
47 | char ext = strdup(ext);
| ^~~
read_data.cpp:42:47: note: ‘const char ext’ previously declared here
42 | int test_ext(const char img_name,const char ext)
| ~~~~~~~~~~~~^~~
read_data.cpp:49:40: error: ‘ext2’ was not declared in this scope; did you mean ‘ext’?
49 | ptr = (char )strstr(img_name2,ext2);
| ^~~~
| ext
read_data.cpp: In function ‘unsigned char read_nifti1_image(unsigned char, char)’:
read_data.cpp:344:32: warning: too many arguments for format [-Wformat-extra-args]
344 | fprintf(stderr,".",img_nm);
| ^~~
make: *** [Makefile:158: read_data.o] Error 1

I have checked with the version on github and this is the most up to date version of the read_data.cpp file.

Please coulf I ask what steps I can do to resolve these errors?

Many thanks,

Yizhou

[tdjtdj]

Yizhou, Try this version of read_data.cpp. Let us know if it works and we can update the GITHUB website. Tim Timothy D. Johnson Professor Department of Biostatistics University of Michigan email: ***@***.*** phone: (734) 936-1007

…

On Thu, Aug 25, 2022 at 1:16 PM yizhwan ***@***.***> wrote: Hi, I am trying to compile BSGLMM on an UBuntu 22.04 running CUDA 11.7. compute 8.6, RTX 3090 TI. Steps taken are: git clone to /opt/ Modify makefile to reflect compute 86 in gencode. I then ran make, resulting in the following errors: read_data.cpp: In function ‘int test_ext(const char*, const char*)’: read_data.cpp:47:11: error: declaration of ‘char* ext’ shadows a parameter 47 | char *ext = strdup(ext); | ^~~ read_data.cpp:42:47: note: ‘const char* ext’ previously declared here 42 | int test_ext(const char *img_name,const char ext) | ~~~~~~~~~~~~^~~ read_data.cpp:49:40: error: ‘ext2’ was not declared in this scope; did you mean ‘ext’? 49 | ptr = (char )strstr(img_name2,ext2); | ^~~~ | ext read_data.cpp: In function ‘unsigned char read_nifti1_image(unsigned char, char*)’: read_data.cpp:344:32: warning: too many arguments for format [-Wformat-extra-args] 344 | fprintf(stderr,".",img_nm); | ^~~ make: *** [Makefile:158: read_data.o] Error 1 I have checked with the version on github and this is the most up to date version of the read_data.cpp file. Please coulf I ask what steps I can do to resolve these errors? Many thanks, Yizhou — Reply to this email directly, view it on GitHub <#16>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACR2ZE5R2F6A57HW7O7UJNLV26S5JANCNFSM57T4ZILQ> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[yizhwan]

Hi Tim,

Unfortunately I don't think your new copy of read_data.cpp was attached to your previous message. I have made some modifications to the old copy of read_data.cpp and the coide now seems to work. I am happy to send it across if you would like?

Yizhou
[email protected]

[tdjtdj]

I think it was. Here it is again. Tim Timothy D. Johnson Professor Department of Biostatistics University of Michigan email: ***@***.*** phone: (734) 936-1007

…

On Thu, Nov 3, 2022 at 9:18 AM yizhwan ***@***.***> wrote: Hi Tim, Unfortunately I don't think your new copy of read_data.cpp was attached to your previous message. I have made some modifications to the old copy of read_data.cpp and the coide now seems to work. I am happy to send it across if you would like? Yizhou ***@***.*** — Reply to this email directly, view it on GitHub <#16 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACR2ZE3UY75RCI5MQVVIHXTWGO3RXANCNFSM57T4ZILQ> . You are receiving this because you commented.Message ID: ***@***.***>