1.0.0-rc7

• [ENH] Update pinned version of nipype to latest master
• [ENH] Added rX permissions to make life easier on Singularity users (#757)
• [DOC] Citation boilerplate (#779)
• [FIX] Patch to remove long filenames after mri_concatenate_lta (#778)
• [FIX] Only use unbiased template with --longitudinal (#771)
• [FIX] Use t1_2_fsnative registration when sampling to surface (#762)
• [ENH] Remove --skull_strip_ants option (#761)
• [DOC] Add reference to beginners guide (#763)

1.0.0-rc6

• [ENH] Add inverse normalization transform (MNI -> T1w) to derivatives (#754)
• [ENH] Fall back to initial registration if BBR fails (#694)
• [FIX] Header and affine transform updates to resolve intermittent misalignments in reports (#743)
• [FIX] Register FreeSurfer template to FMRIPREP template, handling pre-run FreeSurfer subjects more robustly, saving affine to derivatives (#733)
• [ENH] Add OpenFMRI participant sampler command-line tool (#704)
• [ENH] For SyN-SDC, assume phase-encoding direction of A-P unless specified L-R (#740, #744)
• [ENH] Permit skull-stripping with NKI ANTs template (#729)
• [ENH] Erode aCompCor masks to target volume proportions, instead of fixed distances (#731, #732)
• [DOC] Documentation updates (#748)

1.0.0-rc5

• [FIX] Skip slice time correction on BOLD series < 5 volumes (#711)
• [FIX] Skip AFNI check for new versions (#723)
• [DOC] Documentation clarification and updates (#698, #711)

1.0.0-rc4

With thanks to Mathias Goncalves for contributions.

• [ENH] Collapse ITK transforms of head-motion correction in only one file (#695)
• [FIX] Raise error when run.py is called directly (#692)
• [FIX] Parse crash files when they are stored as text (#690)
• [ENH] Replace medial wall values with NaNs (#687)

1.0.0-rc3

With thanks to Anibal Sólon for contributions.

• [ENH] Add --low-mem option to reduce memory usage for large BOLD series (#663)
• [ENH] Parallelize anatomical conformation step (#666)
• [FIX] Handle missing functional data in SubjectSummary node (#670)
• [FIX] Disable --no-skull-strip-ants (AFNI skull-stripping) (#674)
• [FIX] Initialize SyN SDC more robustly (#680)
• [DOC] Add comprehensive documentation of workflow API (#638)

1.0.0-rc2

• [ENH] Increased support for partial field-of-view BOLD datasets (#659)
• [FIX] Slice time correction is now being applied to output data (not only to intermediate file used for motion estimation - #662)
• [FIX] Fieldmap unwarping is now being applied to MNI space outputs (not only to T1w space outputs - #662)

1.0.0-rc1

• [ENH] Include ICA-AROMA confounds in report (#646)
• [ENH] Save non-aggressively denoised BOLD series (#648)
• [ENH] Improved logging messages (#621)
• [ENH] Improved resource management (#622, #629, #640, #641)
• [ENH] Improved confound header names (#634)
• [FIX] Ensure multi-T1w image datasets have RAS-oriented template (#637)
• [FIX] More informative errors for conflicting options (#632)
• [DOC] Improved report summaries (#647)

0.6.0

With thanks to Yaroslav Halchenko and Ilkay Isik for contributions.

• [ENH] Set threshold on up-sampling ratio in conformation, report results (#601)
• [ENH] Censor non-steady-state volumes prior to CompCor (#603)
• [FIX] Conformation failure in thick-slice, oblique T1w datasets (#601)
• [FIX] Crash/report failure of phase-difference SDC pipeline (#602, #604)
• [FIX] Prevent AFNI NIfTI extensions from crashing reference EPI estimation (#619)
• [DOC] Save logs to output directory (#605)
• [ENH] Upgrade to ICA-AROMA 0.4.1-beta (#611)

0.5.4

• [DOC] Improved report summaries describing steps taken (#584)
• [ENH] Uniformize command-line argument style (#592)

0.5.3

With thanks to Yaroslav Halchenko for contributions.

• [ENH] High-pass filter time series prior to CompCor (#577)
• [ENH] Validate and minimally conform BOLD images (#581)
• [FIX] Bug that prevented PE direction estimation (#586)
• [DOC] Log version/time in report (#587)