example

This directory contains example datasets that can be used to test GEMF_FAVITES.py:

• contact_network_complete.tsv and big_contact_network_ba.tsv are example contact networks
  • contact_network_complete.tsv is a small complete graph
  • big_contact_network_ba.tsv is a large graph sampled under the Barabási–Albert model
• initial_states_seir.tsv and big_initial_states_seir.tsv are example initial states file
  • initial_states_seir.tsv should be used with contact_network_complete.tsv
  • big_initial_states_seir.tsv should be used with big_contact_network_ba.tsv
• infected_states_seir.txt is an infected states file for the SEIR model
  • States E (Exposed) and I (Infectious) are infected states
• rates_seir.tsv is a transition rates file for the SEIR model
  • Individuals in state S (Susceptible) transition to state E (Exposed) at a rate proportional to the number of neighbors in state I (Infectious)
  • Individuals in state E (Exposed) transition to state I (Infectious) at an internal rate (i.e., independent of the states of neighbors)
  • Individuals in state I (Infectious) transition to state R (Recovered) at an internal rate (i.e., independent of the states of neighbors)