From 77066761b8d97936d34f569e772b65fc4b9c14be Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 23 Nov 2024 13:41:38 +0200 Subject: [PATCH] Add CHEBI:17292 for PHENIO project --- chebi_slim.obo | 105 +++++++++++++++++++++++++++++++++++++++++++-- chebi_slim.owl | 113 ++++++++++++++++++++++++++++++++++++++++++++++++- seed.txt | 1 + 3 files changed, 213 insertions(+), 6 deletions(-) diff --git a/chebi_slim.obo b/chebi_slim.obo index 44258ac..264085e 100644 --- a/chebi_slim.obo +++ b/chebi_slim.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: chebi/obophenotype/releases/2024-11-20/chebi_slim.owl +data-version: chebi/obophenotype/releases/2024-11-23/chebi_slim.owl subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -7,7 +7,7 @@ synonymtypedef: BRAND_NAME "" synonymtypedef: INN "" synonymtypedef: IUPAC_NAME "" ontology: chebi/obophenotype/chebi_slim -property_value: owl:versionInfo "2024-11-20" xsd:string +property_value: owl:versionInfo "2024-11-23" xsd:string [Term] id: CHEBI:100147 @@ -21641,6 +21641,22 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "31.034" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "31.01839" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "*CO" xsd:string +[Term] +id: CHEBI:142626 +name: alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-) +namespace: chebi_ontology +subset: 2_STAR +synonym: "alpha-NeuNAc-(2->3)-beta-D-Gal-(1->3)-[alpha-L-Fuc-(1->4)]-[alpha-NeuNAc-(2->6)]-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(2-)" RELATED [SUBMITTER] +synonym: "disialyl-Lewis(a) glycolipid(2-)" RELATED [SUBMITTER] +synonym: "IV(3)NeuNAc, III(6)NeuNAc, III(4)Fuc-Lc4Cer(2-)" RELATED [SUBMITTER] +synonym: "lacto disialyl-Le(a)" RELATED [UniProt] +is_a: CHEBI:183224 ! Lacto-series glycosphingolipid +property_value: http://purl.obolibrary.org/obo/chebi/charge "-2" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/formula "C58H92N4O43R2" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "1533.354" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "1532.51353" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "O([C@H]1[C@H]([C@@H]([C@H](O)[C@@H](O1)C)O)O)[C@H]2[C@@H]([C@H]([C@H](O[C@@H]3[C@H]([C@H](O[C@@H]4[C@H](O[C@@H](OC[C@@H]([C@@H](*)O)NC(=O)*)[C@@H]([C@H]4O)O)CO)O[C@@H]([C@@H]3O)CO)O)O[C@@H]2CO[C@]5(O[C@]([C@@H]([C@H](C5)O)NC(C)=O)([C@@H]([C@H](O)CO)O)[H])C([O-])=O)NC(C)=O)O[C@@H]6O[C@@H]([C@H](O)[C@@H]([C@H]6O)O[C@]7(O[C@]([C@@H]([C@H](C7)O)NC(C)=O)([C@@H]([C@H](O)CO)O)[H])C([O-])=O)CO" xsd:string + [Term] id: CHEBI:142638 name: nectriapyrones @@ -86497,6 +86513,46 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "180.15588" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "180.06339" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C[C@H](O)[C@@H](O)[C@@H](O)[C@H](O)C(O)=O" xsd:string +[Term] +id: CHEBI:17292 +name: beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer +namespace: chebi_ontology +alt_id: CHEBI:11165 +alt_id: CHEBI:21173 +alt_id: CHEBI:5242 +alt_id: CHEBI:528 +def: "A glycotetraosylceramide having beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucose as the tetrasaccharide component." [] +subset: 3_STAR +synonym: "(Gal)2 (Glc)1 (GlcNAc)1 (Cer)1" RELATED [KEGG_GLYCAN] +synonym: "1,3-beta-D-Galactosyl-N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-D-glucosylceramide" RELATED [KEGG_COMPOUND] +synonym: "a beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(d18:1(4E))" RELATED [UniProt] +synonym: "beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-Cer" RELATED [ChEBI] +synonym: "beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide" RELATED [ChEBI] +synonym: "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1<->1')-Cer" RELATED [ChEBI] +synonym: "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-Cer" RELATED [ChEBI] +synonym: "Ceramidetetrasaccharide" RELATED [KEGG_COMPOUND] +synonym: "lactotetraosyl ceramide" RELATED [ChEBI] +synonym: "lactotetraosylceramide" RELATED [ChEBI] +synonym: "Lc4Cer" RELATED [KEGG_COMPOUND] +synonym: "N-[(2S,3R,4E)-1-[beta-D-galactopyranosyl-(1->3)-2-acetamido-2-deoxy-beta-D-glucopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyloxy]-3-hydroxyoctadec-4-en-2-yl]alkanamide" EXACT IUPAC_NAME [IUPAC] +synonym: "Paragloboside" RELATED [KEGG_COMPOUND] +synonym: "paragloboside (beta 1->3)" RELATED [ChEBI] +xref: KEGG:C04910 +xref: KEGG:G00037 +xref: KEGG:G01469 +xref: PMID:1373469 {source="Europe PMC"} +xref: PMID:2960671 {source="Europe PMC"} +xref: PMID:7574700 {source="Europe PMC"} +xref: PMID:9111138 {source="Europe PMC"} +is_a: CHEBI:20971 ! D-galactosyl-N-acetyl-D-glucosaminyl-(1->3)-D-galactosyl-(1->4)-D-glucosylceramide +is_a: CHEBI:90800 ! beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide +relationship: has_role CHEBI:75771 ! mouse metabolite +property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/formula "C45H79N2O23R" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "1016.110" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "1015.50736" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "[C@H]([C@@H](/C=C/CCCCCCCCCCCCC)O)(NC(=O)*)CO[C@@H]1O[C@@H]([C@@H](O[C@H]2[C@@H]([C@@H](O[C@H]3[C@@H]([C@@H](O[C@@H]4O[C@@H]([C@H](O)[C@@H]([C@H]4O)O)CO)[C@H](O)[C@H](O3)CO)NC(C)=O)[C@H]([C@@H](CO)O2)O)O)[C@@H]([C@H]1O)O)CO" xsd:string + [Term] id: CHEBI:172923 name: fluorescein (acid form) @@ -115558,6 +115614,14 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "129.13386" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "129.05572" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[O-]C(=O)CCCCC=O" xsd:string +[Term] +id: CHEBI:183224 +name: Lacto-series glycosphingolipid +namespace: chebi_ontology +def: "A series of oligoglycosylceramides having beta-D-galactosyl-(1-3)-N-acetyl-beta-D-glucosaminyl-(1-3)-beta-D-galactosyl-(1-4)-beta-D-glucose as the tetrasaccharide sequence root. The oligosaccharide portion can be elongated in a linear or branched form." [] +subset: 2_STAR +is_a: CHEBI:24402 ! glycosphingolipid + [Term] id: CHEBI:18323 name: anserine @@ -125200,6 +125264,13 @@ synonym: "D-galactoside" EXACT [ChEBI] synonym: "D-galactosides" RELATED [ChEBI] is_a: CHEBI:24163 ! galactoside +[Term] +id: CHEBI:20971 +name: D-galactosyl-N-acetyl-D-glucosaminyl-(1->3)-D-galactosyl-(1->4)-D-glucosylceramide +namespace: chebi_ontology +subset: 1_STAR +is_a: CHEBI:36507 ! D-galactosyl-N-acetyl-D-glucosaminyl-D-galactosyl-D-glucosylceramide + [Term] id: CHEBI:209807 name: cefoxitin @@ -218202,6 +218273,13 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "278.524" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "278.29735" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "C1CC[C@@]2([C@@H](CC[C@@H](CC)C)[C@H](CC[C@@]2([H])C1(C)C)C)C" xsd:string +[Term] +id: CHEBI:36507 +name: D-galactosyl-N-acetyl-D-glucosaminyl-D-galactosyl-D-glucosylceramide +namespace: chebi_ontology +subset: 1_STAR +is_a: CHEBI:23075 ! glycotetraosylceramide + [Term] id: CHEBI:36508 name: glycotriaosylceramide @@ -299258,8 +299336,8 @@ namespace: chebi_ontology def: "Conjugate base of dolichyl D-xylosyl phosphate; major species at pH 7.3." [] subset: 3_STAR synonym: "alpha-(3-methylbut-2-en-1-yl)-omega-{4-[(D-xylopyranosyloxy)(hydroxy)(phosphinato)oxy]-2-methylbutyl}poly[(2E)-2-methylbut-2-ene-1,4-diyl]" EXACT IUPAC_NAME [IUPAC] -synonym: "dolichyl D-xylosyl phosphate" RELATED [UniProt] synonym: "dolichyl D-xylosyl phosphate" RELATED [ChEBI] +synonym: "dolichyl D-xylosyl phosphate" RELATED [UniProt] synonym: "dolichyl D-xylosyl phosphate anion" RELATED [ChEBI] is_a: CHEBI:58945 ! organophosphate oxoanion relationship: is_conjugate_base_of CHEBI:17298 ! dolichyl D-xylosyl phosphate @@ -323172,8 +323250,8 @@ name: icosapentaenoate namespace: chebi_ontology def: "A C20, straight-chain, polyunsaturated fatty acid anion containing five double bonds." [] subset: 3_STAR -synonym: "eicosapentaenoate" RELATED [UniProt] synonym: "eicosapentaenoate" RELATED [ChEBI] +synonym: "eicosapentaenoate" RELATED [UniProt] is_a: CHEBI:57560 ! long-chain fatty acid anion is_a: CHEBI:58954 ! straight-chain saturated fatty acid anion is_a: CHEBI:76567 ! polyunsaturated fatty acid anion @@ -406868,6 +406946,25 @@ property_value: http://purl.obolibrary.org/obo/chebi/mass "130.102" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "130.03784" xsd:string property_value: http://purl.obolibrary.org/obo/chebi/smiles "[NH3+]C(C(NC(C([O-])=O)*)=O)*" xsd:string +[Term] +id: CHEBI:90800 +name: beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide +namespace: chebi_ontology +def: "A glycotetraosylceramide having beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl component attached to the primary hydroxy function of a ceramide with undefined sphingoid base." [] +subset: 3_STAR +synonym: "beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer" RELATED [ChEBI] +synonym: "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1<->1')-Cer" RELATED [ChEBI] +synonym: "Lc4Cer" RELATED [UniProt] +xref: PMID:11368156 {source="SUBMITTER"} +is_a: CHEBI:183224 ! Lacto-series glycosphingolipid +is_a: CHEBI:23075 ! glycotetraosylceramide +relationship: has_functional_parent CHEBI:142626 ! alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-) +property_value: http://purl.obolibrary.org/obo/chebi/charge "0" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/formula "C30H50N2O23R2" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/mass "806.719" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/monoisotopicmass "806.28044" xsd:string +property_value: http://purl.obolibrary.org/obo/chebi/smiles "[C@H]1(O[C@@H]([C@H](O)[C@@H]([C@H]1O)O)CO)O[C@@H]2[C@H]([C@H](O[C@@H]3[C@H]([C@H](O[C@@H]4[C@H](O[C@@H](OC[C@@H]([C@@H](*)O)NC(=O)*)[C@@H]([C@H]4O)O)CO)O[C@@H]([C@@H]3O)CO)O)O[C@H](CO)[C@H]2O)NC(C)=O" xsd:string + [Term] id: CHEBI:90821 name: 15-HPETE(1-) diff --git a/chebi_slim.owl b/chebi_slim.owl index 2e07e37..b939c83 100644 --- a/chebi_slim.owl +++ b/chebi_slim.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-11-20") + +Annotation(owl:versionInfo "2024-11-23") Declaration(Class()) Declaration(Class()) @@ -1111,6 +1111,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -3176,6 +3177,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4049,6 +4051,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4468,6 +4471,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8906,6 +8910,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -18005,6 +18010,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -41014,6 +41020,23 @@ AnnotationAssertion(rdfs:label "pr SubClassOf( ) SubClassOf( ) +# Class: (alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-)) + +AnnotationAssertion( "-2") +AnnotationAssertion( "C58H92N4O43R2") +AnnotationAssertion( "1533.354") +AnnotationAssertion( "1532.51353") +AnnotationAssertion( "O([C@H]1[C@H]([C@@H]([C@H](O)[C@@H](O1)C)O)O)[C@H]2[C@@H]([C@H]([C@H](O[C@@H]3[C@H]([C@H](O[C@@H]4[C@H](O[C@@H](OC[C@@H]([C@@H](*)O)NC(=O)*)[C@@H]([C@H]4O)O)CO)O[C@@H]([C@@H]3O)CO)O)O[C@@H]2CO[C@]5(O[C@]([C@@H]([C@H](C5)O)NC(C)=O)([C@@H]([C@H](O)CO)O)[H])C([O-])=O)NC(C)=O)O[C@@H]6O[C@@H]([C@H](O)[C@@H]([C@H]6O)O[C@]7(O[C@]([C@@H]([C@H](C7)O)NC(C)=O)([C@@H]([C@H](O)CO)O)[H])C([O-])=O)CO") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "SUBMITTER") "IV(3)NeuNAc, III(6)NeuNAc, III(4)Fuc-Lc4Cer(2-)") +AnnotationAssertion(Annotation( "SUBMITTER") "alpha-NeuNAc-(2->3)-beta-D-Gal-(1->3)-[alpha-L-Fuc-(1->4)]-[alpha-NeuNAc-(2->6)]-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(2-)") +AnnotationAssertion(Annotation( "SUBMITTER") "disialyl-Lewis(a) glycolipid(2-)") +AnnotationAssertion(Annotation( "UniProt") "lacto disialyl-Le(a)") +AnnotationAssertion( "CHEBI:142626") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "alpha-N-acetylneuraminosyl-(2->3)-beta-D-galactosyl-(1->3)-[alpha-L-fucosyl-(1->4)]-[alpha-N-acetylneuraminosyl-(2->6)]-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide(2-)") +SubClassOf( ) + # Class: (nectriapyrones) AnnotationAssertion( "Any member of the class of 2-pyranones that is nectriapyrone and its derivatives. They are produced mainly by symbiotic fungi, including endophytes and plant pathogens.") @@ -107935,6 +107958,47 @@ AnnotationAssertion(rdfs:label "L-f SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer) + +AnnotationAssertion( "A glycotetraosylceramide having beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucose as the tetrasaccharide component.") +AnnotationAssertion( "0") +AnnotationAssertion( "C45H79N2O23R") +AnnotationAssertion( "1016.110") +AnnotationAssertion( "1015.50736") +AnnotationAssertion( "[C@H]([C@@H](/C=C/CCCCCCCCCCCCC)O)(NC(=O)*)CO[C@@H]1O[C@@H]([C@@H](O[C@H]2[C@@H]([C@@H](O[C@H]3[C@@H]([C@@H](O[C@@H]4O[C@@H]([C@H](O)[C@@H]([C@H]4O)O)CO)[C@H](O)[C@H](O3)CO)NC(C)=O)[C@H]([C@@H](CO)O2)O)O)[C@@H]([C@H]1O)O)CO") +AnnotationAssertion( "CHEBI:11165") +AnnotationAssertion( "CHEBI:21173") +AnnotationAssertion( "CHEBI:5242") +AnnotationAssertion( "CHEBI:528") +AnnotationAssertion( "KEGG:C04910") +AnnotationAssertion( "KEGG:G00037") +AnnotationAssertion( "KEGG:G01469") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:1373469") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:2960671") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:7574700") +AnnotationAssertion(Annotation( "Europe PMC") "PMID:9111138") +AnnotationAssertion(Annotation( "IUPAC") Annotation( ) "N-[(2S,3R,4E)-1-[beta-D-galactopyranosyl-(1->3)-2-acetamido-2-deoxy-beta-D-glucopyranosyl-(1->3)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranosyloxy]-3-hydroxyoctadec-4-en-2-yl]alkanamide") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "KEGG_GLYCAN") "(Gal)2 (Glc)1 (GlcNAc)1 (Cer)1") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "1,3-beta-D-Galactosyl-N-acetyl-D-glucosaminyl-1,3-beta-D-galactosyl-1,4-D-glucosylceramide") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Ceramidetetrasaccharide") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Lc4Cer") +AnnotationAssertion(Annotation( "KEGG_COMPOUND") "Paragloboside") +AnnotationAssertion(Annotation( "UniProt") "a beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer(d18:1(4E))") +AnnotationAssertion(Annotation( "ChEBI") "beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-Cer") +AnnotationAssertion(Annotation( "ChEBI") "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1<->1')-Cer") +AnnotationAssertion(Annotation( "ChEBI") "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-Cer") +AnnotationAssertion(Annotation( "ChEBI") "beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosylceramide") +AnnotationAssertion(Annotation( "ChEBI") "lactotetraosyl ceramide") +AnnotationAssertion(Annotation( "ChEBI") "lactotetraosylceramide") +AnnotationAssertion(Annotation( "ChEBI") "paragloboside (beta 1->3)") +AnnotationAssertion( "CHEBI:17292") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (fluorescein (acid form)) AnnotationAssertion( "A xanthene dye that is highly fluorescent and commonly used as a fluorescent tracer.") @@ -137869,6 +137933,15 @@ SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (Lacto-series glycosphingolipid) + +AnnotationAssertion( "A series of oligoglycosylceramides having beta-D-galactosyl-(1-3)-N-acetyl-beta-D-glucosaminyl-(1-3)-beta-D-galactosyl-(1-4)-beta-D-glucose as the tetrasaccharide sequence root. The oligosaccharide portion can be elongated in a linear or branched form.") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:183224") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Lacto-series glycosphingolipid") +SubClassOf( ) + # Class: (anserine) AnnotationAssertion( "A dipeptide comprising of beta-alanine and 3-methyl-L-histidine units.") @@ -147930,6 +148003,14 @@ AnnotationAssertion( "D-galactoside") SubClassOf( ) +# Class: (D-galactosyl-N-acetyl-D-glucosaminyl-(1->3)-D-galactosyl-(1->4)-D-glucosylceramide) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:20971") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-galactosyl-N-acetyl-D-glucosaminyl-(1->3)-D-galactosyl-(1->4)-D-glucosylceramide") +SubClassOf( ) + # Class: (cefoxitin) AnnotationAssertion( "A semisynthetic cephamycin antibiotic which, in addition to the methoxy group at the 7alpha position, has 2-thienylacetamido and carbamoyloxymethyl side-groups. It is resistant to beta-lactamase.") @@ -245376,6 +245457,14 @@ AnnotationAssertion(rdfs:label "lab SubClassOf( ) SubClassOf( ) +# Class: (D-galactosyl-N-acetyl-D-glucosaminyl-D-galactosyl-D-glucosylceramide) + +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion( "CHEBI:36507") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "D-galactosyl-N-acetyl-D-glucosaminyl-D-galactosyl-D-glucosylceramide") +SubClassOf( ) + # Class: (glycotriaosylceramide) AnnotationAssertion( "chebi_ontology") @@ -443151,6 +443240,26 @@ AnnotationAssertion(rdfs:label "dip SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide) + +AnnotationAssertion( "A glycotetraosylceramide having beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl component attached to the primary hydroxy function of a ceramide with undefined sphingoid base.") +AnnotationAssertion( "0") +AnnotationAssertion( "C30H50N2O23R2") +AnnotationAssertion( "806.719") +AnnotationAssertion( "806.28044") +AnnotationAssertion( "[C@H]1(O[C@@H]([C@H](O)[C@@H]([C@H]1O)O)CO)O[C@@H]2[C@H]([C@H](O[C@@H]3[C@H]([C@H](O[C@@H]4[C@H](O[C@@H](OC[C@@H]([C@@H](*)O)NC(=O)*)[C@@H]([C@H]4O)O)CO)O[C@@H]([C@@H]3O)CO)O)O[C@H](CO)[C@H]2O)NC(C)=O") +AnnotationAssertion(Annotation( "SUBMITTER") "PMID:11368156") +AnnotationAssertion( "chebi_ontology") +AnnotationAssertion(Annotation( "UniProt") "Lc4Cer") +AnnotationAssertion(Annotation( "ChEBI") "beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1')-Cer") +AnnotationAssertion(Annotation( "ChEBI") "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1<->1')-Cer") +AnnotationAssertion( "CHEBI:90800") +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1')-ceramide") +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (15-HPETE(1-)) AnnotationAssertion( "A HPETE anion that is the conjugate base of 15-HPETE arising from deprotonation of the carboxylic acid group; major species at pH 7.3.") diff --git a/seed.txt b/seed.txt index efe5594..56fcf50 100644 --- a/seed.txt +++ b/seed.txt @@ -1726,6 +1726,7 @@ CHEBI:17281 CHEBI:17282 CHEBI:17287 CHEBI:172878 +CHEBI:17292 CHEBI:172923 CHEBI:172925 CHEBI:17293