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Fix syntax in OBO products #7

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6 tasks
althonos opened this issue Jun 5, 2019 · 0 comments
Open
6 tasks

Fix syntax in OBO products #7

althonos opened this issue Jun 5, 2019 · 0 comments

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@althonos
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althonos commented Jun 5, 2019

Hi !

The current release contains several syntax errors that make the OBO products invalid considering the OBO format version 1.4 specification:

  • KEGG COMPOUND:XXX xrefs should be updated to KEGG_COMPOUND:XXX just like ChEBI did
  • Several cases of full-text book references (such as Bolton, B. (1994). Identificstion guide to the ant genera of the world. Cambridge, Mass., Harvard University PRess. pp.1-222.")
  • Invalid dbxrefs (such as The Pherobase: Database of Insect Phermones and Semiochemicals\:El-Sayed AM "http://www.pherobase.com")
  • Invalid links in dbxrefs (such as WP:\:http\://en.wikipedia.org/wiki/Semiochemical)
  • Invalid DOI format (e.g. XX:DOI\: 10.1086/522843)
  • Placeholder dbxrefs (XX:<new dbxref>)

cc @cmungall

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