diff --git a/src/ontology/profile.txt b/src/ontology/profile.txt index 1e35565903..f8fe415222 100644 --- a/src/ontology/profile.txt +++ b/src/ontology/profile.txt @@ -27,6 +27,6 @@ ERROR equivalent_class_axiom_no_genus ERROR illegal_use_of_built_in_vocabulary ERROR invalid_entity_uri ERROR missing_subset_declaration -WARN missing_synonymtype_declaration +ERROR missing_synonymtype_declaration ERROR misused_replaced_by ERROR multiple_equivalent_class_definitions diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index a21e372dba..c80fb632bf 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -39,8 +39,9 @@ synonymtypedef: LATIN "latin term" synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recorded" synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes" synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals" +synonymtypedef: OMO:0003000 "abbreviation" +synonymtypedef: OMO:0003004 "plural form" synonymtypedef: PENDING_REVIEW "expert consultation and attribution required" -synonymtypedef: PLURAL "plural term" synonymtypedef: SENSU "taxonomic disambiguation" synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns" default-namespace: uberon @@ -802,7 +803,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "camera-type eye plus associated structures" RELATED [] synonym: "eye" BROAD [FMA:54448] -synonym: "eyes" RELATED PLURAL [TAO:0000107] +synonym: "eyes" RELATED OMO:0003004 [TAO:0000107] synonym: "orbital part of face" RELATED [FMA:54448] synonym: "orbital region" RELATED [FMA:54448] synonym: "regio orbitalis" EXACT LATIN [FMA:54448, FMA:TA] @@ -972,7 +973,7 @@ def: "Major subdivision of an organism that protrudes from the body[DOS, CARO]." subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "appendages" RELATED PLURAL [XAO:0000218] +synonym: "appendages" RELATED OMO:0003004 [XAO:0000218] synonym: "extremitaet" RELATED [BTO:0001492] synonym: "extremity" RELATED [] synonym: "limbs/digits/tail" RELATED [MP:0000001] @@ -1381,7 +1382,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "dorsal root ganglia" RELATED PLURAL [] +synonym: "dorsal root ganglia" RELATED OMO:0003004 [] synonym: "dorsal root ganglion" EXACT [BTO:0001264] synonym: "DRG" RELATED OMO:0003000 [] synonym: "ganglion of dorsal root" EXACT [OBOL:automatic] @@ -1537,7 +1538,7 @@ def: "The deepest portions of the vagina, extending into the recesses created by subset: uberon_slim synonym: "fornix" BROAD [] synonym: "fornix vaginae" EXACT LATIN [FMA:19985, FMA:TA] -synonym: "vaginal fornices" RELATED PLURAL [] +synonym: "vaginal fornices" RELATED OMO:0003004 [] synonym: "vaginal fornix" EXACT [] xref: FMA:19985 xref: NCIT:C33848 @@ -1622,9 +1623,9 @@ def: "Thickened areas of the saccule or utricle where the termination of the ves subset: pheno_slim subset: uberon_slim synonym: "acoustic macula" RELATED [MESH:A09.246.631.909.625.125] -synonym: "acoustic maculae" RELATED PLURAL [MESH:A09.246.631.909.625.125] +synonym: "acoustic maculae" RELATED OMO:0003004 [MESH:A09.246.631.909.625.125] synonym: "macula" EXACT [] -synonym: "maculae" EXACT PLURAL [] +synonym: "maculae" EXACT OMO:0003004 [] synonym: "sensory macula" EXACT [ZFA:0000386] synonym: "sensory patch" EXACT [ZFA:0000386] xref: GAID:777 @@ -1741,7 +1742,7 @@ name: duct def: "A tubular structure that transports secreted or excreted substances." [http://orcid.org/0000-0002-6601-2165, http://www.siumed.edu/~dking2/intro/glands.htm#ducts] subset: grouping_class synonym: "anatomical duct" EXACT [] -synonym: "ducts" RELATED PLURAL [XAO:0004000] +synonym: "ducts" RELATED OMO:0003004 [XAO:0004000] synonym: "exocrine duct" NARROW [] synonym: "exocrine gland duct" NARROW [] xref: AAO:0011123 @@ -2272,7 +2273,7 @@ subset: vertebrate_core synonym: "amphibian adult kidney" RELATED [XAO:0000141] synonym: "corpus Wolffi" RELATED [BTO:0001542] synonym: "mesonephric kidney" EXACT [XAO:0000141] -synonym: "mesonephroi" EXACT PLURAL [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +synonym: "mesonephroi" EXACT OMO:0003004 [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] synonym: "middle kidney" RELATED [BTO:0001542] synonym: "opisthonephros" RELATED [VHOG:0000038, XAO:0000141] synonym: "opisto nephros" RELATED [] @@ -2366,7 +2367,7 @@ relationship: develops_from UBERON:0000081 ! metanephros id: UBERON:0000083 name: mesonephric tubule def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules] -synonym: "renal tubules" RELATED PLURAL [VHOG:0000500] +synonym: "renal tubules" RELATED OMO:0003004 [VHOG:0000500] synonym: "tubuli mesonephrici" RELATED LATIN [Wikipedia:Mesonephric_tubules] xref: AAO:0010389 xref: EHDAA2:0001134 @@ -3056,7 +3057,7 @@ def: "Structure derived from foregut that becomes a lung[GO]." [GO:0060431, Wiki subset: pheno_slim synonym: "gemma pulmonalis" RELATED LATIN [Wikipedia:Lung_buds] synonym: "gemma respiratoria" RELATED LATIN [Wikipedia:Lung_buds] -synonym: "lung bud" RELATED PLURAL [] +synonym: "lung bud" RELATED OMO:0003004 [] synonym: "primary lung bud" RELATED [GO:0060572] synonym: "respiratory diverticulum" RELATED [Wikipedia:Lung_buds] xref: BTO:0001643 @@ -3302,7 +3303,7 @@ id: UBERON:0000151 name: pectoral fin def: "Paired fin that is located in the thoracic region of the body." [TAO:curator, VSAO:0000147] synonym: "forefin" EXACT [VSAO:0000147] -synonym: "pectoral fins" RELATED PLURAL [ZFA:0001161] +synonym: "pectoral fins" RELATED OMO:0003004 [ZFA:0001161] xref: BTO:0004653 xref: SCTID:416982006 xref: TAO:0001161 @@ -3322,7 +3323,7 @@ id: UBERON:0000152 name: pelvic fin def: "Paired fin located in the abdominal position of the body." [TAO:curator, VSAO:0000129] subset: efo_slim -synonym: "pelvic fins" RELATED PLURAL [ZFA:0001184] +synonym: "pelvic fins" RELATED OMO:0003004 [ZFA:0001184] xref: BTO:0004651 xref: EFO:0003644 xref: TAO:0001184 @@ -3365,7 +3366,7 @@ synonym: "theca cell layer of ovarian follicle" EXACT [] synonym: "theca folliculi" RELATED LATIN [Wikipedia:Theca_of_follicle] synonym: "theca of follicle" EXACT [] synonym: "thecal cell layer" EXACT [ZFA:0001113] -synonym: "thecal cell layers" RELATED PLURAL [ZFA:0001113] +synonym: "thecal cell layers" RELATED OMO:0003004 [ZFA:0001113] xref: BTO:0002853 xref: EFO:0003629 xref: EMAPA:35636 @@ -3966,11 +3967,11 @@ name: gyrus def: "A ridge on the cerebral cortex. It is generally surrounded by one or more sulci ." [https://github.com/obophenotype/uberon/issues/573, Wikipedia:Gyrus] subset: pheno_slim synonym: "cerebral gyrus" EXACT [BTO:0002495] -synonym: "folia" RELATED PLURAL [] +synonym: "folia" RELATED OMO:0003004 [] synonym: "folium" RELATED [PHENOSCAPE:wd] synonym: "folium of brain" RELATED [] -synonym: "gyri" RELATED PLURAL [BTO:0002495] -synonym: "gyri of cerebrum" RELATED PLURAL [BTO:0002495] +synonym: "gyri" RELATED OMO:0003004 [BTO:0002495] +synonym: "gyri of cerebrum" RELATED OMO:0003004 [BTO:0002495] synonym: "gyrus of cerebral hemisphere" RELATED [FMA:83874] synonym: "gyrus of cerebrum" RELATED [BTO:0002495] synonym: "gyrus of neuraxis" EXACT [FMA:83874] @@ -4066,8 +4067,8 @@ creation_date: 2009-04-18T12:12:27Z id: UBERON:0000205 name: papula def: "A thin protuberance on the surface of the body of an echinoderm containing diverticula of the water vascular system lined by ciliated peritoneum. Along with tube feet, provide the principle gas exchange surfaces.." [ISBN:0030229073] -synonym: "papulae" EXACT PLURAL [ISBN:0030229073] -synonym: "papulli" EXACT PLURAL [] +synonym: "papulae" EXACT OMO:0003004 [ISBN:0030229073] +synonym: "papulli" EXACT OMO:0003004 [] xref: Wikipedia:Papula is_a: UBERON:0002535 ! gill relationship: dc-contributor https://orcid.org/0000-0002-6601-2165 ! Christopher J. Mungall @@ -5132,13 +5133,13 @@ subset: pheno_slim synonym: "kidney medulla" EXACT [OBOL:automatic] synonym: "medulla of kidney" EXACT [OBOL:automatic] synonym: "medulla renalis" EXACT LATIN [FMA:74268, FMA:TA] -synonym: "medullary pyramids" RELATED PLURAL [FMA:74268] +synonym: "medullary pyramids" RELATED OMO:0003004 [FMA:74268] synonym: "pyramides renales" EXACT LATIN [FMA:74268, FMA:TA] synonym: "renal marrow" RELATED [BTO:0001167] -synonym: "renal medullae" EXACT PLURAL [FMA:86327] -synonym: "renal medullae set" EXACT PLURAL [FMA:86327] -synonym: "renal pyramids" EXACT PLURAL [FMA:74268] -synonym: "renal pyramids set" EXACT PLURAL [FMA:74268] +synonym: "renal medullae" EXACT OMO:0003004 [FMA:86327] +synonym: "renal medullae set" EXACT OMO:0003004 [FMA:86327] +synonym: "renal pyramids" EXACT OMO:0003004 [FMA:74268] +synonym: "renal pyramids set" EXACT OMO:0003004 [FMA:74268] xref: BTO:0001167 xref: CALOHA:TS-1157 xref: EMAPA:19279 @@ -5746,7 +5747,7 @@ def: "Pia mater or arachnoid mater." [https://github.com/obophenotype/uberon/iss subset: organ_slim synonym: "arachnoid mater and pia mater" RELATED [FMA:231515] synonym: "arachnoidea mater et pia mater" RELATED [BTO:0001634] -synonym: "leptomeninges" EXACT PLURAL [NLXANAT:090207] +synonym: "leptomeninges" EXACT OMO:0003004 [NLXANAT:090207] synonym: "pia-arachnoid" RELATED [BTO:0001634] synonym: "pia-arachnoid of neuraxis" RELATED [FMA:231515] xref: BTO:0001634 @@ -5825,8 +5826,8 @@ def: "Any of the large papillae, which have multiple taste buds in the trough su subset: pheno_slim synonym: "circumvallate papilla" EXACT [MA:0001594] synonym: "circumvallate papilla of tongue" EXACT [FMA:54822] -synonym: "circumvallate papillae" RELATED PLURAL [] -synonym: "papilla vallatae" EXACT PLURAL [FMA:71449, FMA:TA] +synonym: "circumvallate papillae" RELATED OMO:0003004 [] +synonym: "papilla vallatae" EXACT OMO:0003004 [FMA:71449, FMA:TA] synonym: "vallate papilla of tongue" EXACT [] xref: BIRNLEX:4106_2 xref: BTO:0001705 @@ -5926,8 +5927,8 @@ def: "The upturned perpendicular extremity of the mandible." [ISBN:0-683-40008-8 subset: pheno_slim synonym: "lower ramus" RELATED [Wikipedia:Ramus_of_the_mandible] synonym: "mandible ramus" EXACT [MA:0002815] -synonym: "rami mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible] -synonym: "ramus mandibulae" RELATED PLURAL [Wikipedia:Ramus_of_the_mandible] +synonym: "rami mandibulae" RELATED OMO:0003004 [Wikipedia:Ramus_of_the_mandible] +synonym: "ramus mandibulae" RELATED OMO:0003004 [Wikipedia:Ramus_of_the_mandible] synonym: "ramus of mandible" EXACT [FMA:52828] xref: BTO:0001751 xref: EMAPA:25100 @@ -6099,7 +6100,7 @@ name: dermal papilla def: "A mesodermal signaling center of the hair follicle consisting of closely packed specialized mesenchymal fibroblasts. Framed by the enlarged bulb matrix in anagen." [DOI:10.1016/j.cub.2008.12.005] subset: pheno_slim synonym: "dermal papilla cell" RELATED [BTO:0001858] -synonym: "dermal papillae" EXACT PLURAL [] +synonym: "dermal papillae" EXACT OMO:0003004 [] synonym: "follicular papilla" EXACT [FMA:70737] synonym: "hair follicle dermal papilla" RELATED [MP:0010687] synonym: "hair papilla" RELATED [] @@ -6234,7 +6235,7 @@ name: gastric pit alt_id: UBERON:0000425 def: "Gastric pits are indentations in the stomach which denote entrances to the gastric glands. They are deeper in the pylorus than they are in the other parts of the stomach. The human stomach has several million of these pits." [Wikipedia:Gastric_pits] synonym: "foveola gastrica" RELATED [BTO:0002364] -synonym: "foveolae gastricae" EXACT PLURAL [FMA:76583, FMA:TA] +synonym: "foveolae gastricae" EXACT OMO:0003004 [FMA:76583, FMA:TA] synonym: "foveolae gastricae" RELATED LATIN [Wikipedia:Gastric_pits] synonym: "gastric foveola" EXACT [FMA:62947] xref: BTO:0002364 @@ -6317,7 +6318,7 @@ id: UBERON:0000430 name: ventral intermediate nucleus of thalamus def: "A nucleus medially located within the ventral nuclei of the thalamus." [BTO:0002469] subset: vertebrate_core -synonym: "intermediate thalamic nuclei" RELATED PLURAL [ZFA:0000370] +synonym: "intermediate thalamic nuclei" RELATED OMO:0003004 [ZFA:0000370] synonym: "intermediate thalamic nucleus" RELATED [TAO:0000370] synonym: "nucleus ventralis intermedius thalami" RELATED [BTO:0002469] xref: BTO:0002469 @@ -6449,7 +6450,7 @@ consider: FMA:77761 id: UBERON:0000439 name: arachnoid trabecula def: "The arachnoid trabeculae are delicate strands of connective tissue that loosely connect the two innermost layers of the meninges -- the arachnoid mater and the pia mater. They are found within the subarachnoid space where cerebrospinal fluid is also found. Embryologically, the trabeculae are the remnants of the common precursor that forms both the arachnoid and pial layers of the meninges." [Wikipedia:Arachnoid_trabeculae] -synonym: "arachnoid trabeculae" RELATED PLURAL [] +synonym: "arachnoid trabeculae" RELATED OMO:0003004 [] synonym: "trabecula arachnoideum" RELATED LATIN [] xref: BTO:0002500 xref: FMA:83979 @@ -6464,7 +6465,7 @@ name: trabecula def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, Wikipedia:Trabecula] subset: grouping_class subset: pheno_slim -synonym: "trabeculae" EXACT PLURAL [] +synonym: "trabeculae" EXACT OMO:0003004 [] xref: BTO:0002501 xref: FMA:85273 xref: Wikipedia:Trabecula @@ -6837,7 +6838,7 @@ name: anatomical space def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level -synonym: "anatomical spaces" RELATED PLURAL [ZFA:0001643] +synonym: "anatomical spaces" RELATED OMO:0003004 [ZFA:0001643] synonym: "lumen" BROAD [] synonym: "lumen space" EXACT [] synonym: "space" BROAD [] @@ -6916,7 +6917,7 @@ subset: common_anatomy subset: pheno_slim subset: uberon_slim subset: upper_level -synonym: "anatomical systems" RELATED PLURAL [ZFA:0001439] +synonym: "anatomical systems" RELATED OMO:0003004 [ZFA:0001439] synonym: "body system" EXACT [BIRNLEX:14] synonym: "connected anatomical system" EXACT [CARO:0000011] synonym: "organ system" EXACT [] @@ -7033,7 +7034,7 @@ id: UBERON:0000471 name: compound organ component def: "Multi-tissue structure that is part of a compound organ." [CARO:0000019, http://orcid.org/0000-0001-9114-8737] subset: upper_level -synonym: "compound organ components" RELATED PLURAL [ZFA:0001489] +synonym: "compound organ components" RELATED OMO:0003004 [ZFA:0001489] xref: AAO:0010017 xref: AEO:0000019 xref: BILA:0000019 @@ -7053,7 +7054,7 @@ id: UBERON:0000472 name: simple organ def: "Multi-tissue structure that is not part of a compound organ." [CARO:0000021, http://orcid.org/0000-0001-9114-8737] subset: upper_level -synonym: "simple organs" RELATED PLURAL [ZFA:0001492] +synonym: "simple organs" RELATED OMO:0003004 [ZFA:0001492] xref: AAO:0010051 xref: AEO:0000190 xref: BILA:0000021 @@ -7081,7 +7082,7 @@ synonym: "gonad of male genitalia" EXACT [OBOL:automatic] synonym: "gonad of male reproductive system" EXACT [OBOL:automatic] synonym: "male gonad" EXACT [OBOL:automatic] synonym: "orchis" RELATED [BTO:0001363] -synonym: "testes" RELATED PLURAL [] +synonym: "testes" RELATED OMO:0003004 [] synonym: "testicle" EXACT [FMA:7210] synonym: "testiculus" RELATED LATIN [BTO:0001363] xref: AAO:0000606 @@ -7134,7 +7135,7 @@ subset: uberon_slim synonym: "female genital system" RELATED [] synonym: "female genital tract" RELATED [] synonym: "female genitalia" RELATED [] -synonym: "female genitals" RELATED PLURAL [XAO:0000156] +synonym: "female genitals" RELATED OMO:0003004 [XAO:0000156] synonym: "female organism genitalia" EXACT [OBOL:automatic] synonym: "female organism reproductive system" EXACT [OBOL:automatic] synonym: "female reproductive tract" RELATED [MA:0000381] @@ -7227,7 +7228,7 @@ name: acellular anatomical structure def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: vertebrate_core -synonym: "acellular anatomical structures" RELATED PLURAL [ZFA:0000382] +synonym: "acellular anatomical structures" RELATED OMO:0003004 [ZFA:0000382] xref: AAO:0010268 xref: AEO:0000040 xref: BILA:0000040 @@ -7267,7 +7268,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "extra-embryonic structure" EXACT [] -synonym: "extraembryonic structures" RELATED PLURAL [ZFA:0000020] +synonym: "extraembryonic structures" RELATED OMO:0003004 [ZFA:0000020] synonym: "extraembryonic tissue" RELATED [] xref: AAO:0010020 xref: AEO:0000042 @@ -7361,7 +7362,7 @@ name: multi-tissue structure def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, http://orcid.org/0000-0001-9114-8737] subset: common_anatomy subset: upper_level -synonym: "multi-tissue structures" RELATED PLURAL [ZFA:0001488] +synonym: "multi-tissue structures" RELATED OMO:0003004 [ZFA:0001488] xref: AAO:0010048 xref: AEO:0000055 xref: BILA:0000055 @@ -7388,7 +7389,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "basal lamina" RELATED [CARO:0000065] synonym: "basal lamina of connective tissue" EXACT [FMA:62918] -synonym: "basal laminae" RELATED PLURAL [VHOG:0001592] +synonym: "basal laminae" RELATED OMO:0003004 [VHOG:0001592] synonym: "lamina basalis" RELATED LATIN [Wikipedia:Basal_lamina] xref: AAO:0010269 xref: AEO:0000065 @@ -7465,7 +7466,7 @@ def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex cuboideum" EXACT [] -synonym: "simple cuboidal epithelia" RELATED PLURAL [ZFA:0001497] +synonym: "simple cuboidal epithelia" RELATED OMO:0003004 [ZFA:0001497] xref: AAO:0010064 xref: AEO:0000067 xref: BILA:0000067 @@ -7493,7 +7494,7 @@ subset: vertebrate_core synonym: "columnar epithelium" BROAD [EHDAA2:0003068] synonym: "columnar epithlium" BROAD [AEO:0000068] synonym: "epithelium simplex columnare" EXACT [] -synonym: "simple columnar epithelia" RELATED PLURAL [ZFA:0001496] +synonym: "simple columnar epithelia" RELATED OMO:0003004 [ZFA:0001496] synonym: "simple columnar epithelium" EXACT [] xref: AAO:0010063 xref: AEO:0000068 @@ -7546,7 +7547,7 @@ def: "Unilaminar epithelium which consists of a single layer of squamous cells. subset: uberon_slim subset: vertebrate_core synonym: "epithelium simplex squamosum" EXACT [] -synonym: "simple squamous epithelia" RELATED PLURAL [ZFA:0001498] +synonym: "simple squamous epithelia" RELATED OMO:0003004 [ZFA:0001498] xref: AAO:0010066 xref: AEO:0000070 xref: BILA:0000070 @@ -7571,7 +7572,7 @@ id: UBERON:0000488 name: atypical epithelium def: "Epithelium that consists of epithelial cells not arranged in one ore more layers." [http://orcid.org/0000-0001-9114-8737] subset: vertebrate_core -synonym: "atypical epithelia" RELATED PLURAL [ZFA:0001493] +synonym: "atypical epithelia" RELATED OMO:0003004 [ZFA:0001493] synonym: "heterogenous epithelium" EXACT [] xref: AAO:0010057 xref: AEO:0000071 @@ -7591,7 +7592,7 @@ name: cavitated compound organ def: "Compound organ that contains one or more macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] subset: organ_slim subset: upper_level -synonym: "cavitated compound organs" RELATED PLURAL [ZFA:0001490] +synonym: "cavitated compound organs" RELATED OMO:0003004 [ZFA:0001490] synonym: "cavitated organ" EXACT [FMA:55671] xref: AAO:0010016 xref: AEO:0000072 @@ -7615,7 +7616,7 @@ name: unilaminar epithelium def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium.[FMA]." [FMA:45561, http://orcid.org/0000-0001-9114-8737] subset: vertebrate_core synonym: "simple epithelium" EXACT [FMA:45561] -synonym: "unilaminar epithelia" RELATED PLURAL [ZFA:0001495] +synonym: "unilaminar epithelia" RELATED OMO:0003004 [ZFA:0001495] xref: AAO:0010062 xref: AEO:0000073 xref: BILA:0000073 @@ -7640,7 +7641,7 @@ name: solid compound organ def: "Compound organ that does not contain macroscopic anatomical spaces." [http://orcid.org/0000-0001-9114-8737] subset: organ_slim subset: upper_level -synonym: "solid compound organs" RELATED PLURAL [ZFA:0001491] +synonym: "solid compound organs" RELATED OMO:0003004 [ZFA:0001491] synonym: "solid organ" RELATED [FMA:55670] xref: AAO:0010019 xref: AEO:0000074 @@ -8292,7 +8293,7 @@ comment: Innervation notes: They are innervated by the pharyngeal branch of the subset: efo_slim subset: pheno_slim synonym: "branchial muscle" EXACT [ZFA:0000172] -synonym: "branchial muscles" RELATED PLURAL [TAO:0000172] +synonym: "branchial muscles" RELATED OMO:0003004 [TAO:0000172] synonym: "muscle of pharynx" EXACT [] synonym: "muscle organ of pharynx" EXACT [OBOL:automatic] synonym: "musculi pharyngis" RELATED LATIN [Wikipedia:Pharyngeal_muscles] @@ -9127,7 +9128,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "cornea of camera-type eye" EXACT [GO:0061303] -synonym: "corneas" RELATED PLURAL [ZFA:0000640] +synonym: "corneas" RELATED OMO:0003004 [ZFA:0000640] synonym: "tunica cornea" RELATED [] xref: AAO:0010344 xref: BTO:0000286 @@ -9178,7 +9179,7 @@ synonym: "crystalline lens" RELATED [BTO:0000723, PMID:36055924] synonym: "eye lens" EXACT SENSU [] synonym: "lens" EXACT SENSU [] synonym: "lens crystallina" EXACT [Wikipedia:Lens_(anatomy)] -synonym: "lenses" RELATED PLURAL [ZFA:0000035] +synonym: "lenses" RELATED OMO:0003004 [ZFA:0000035] synonym: "ocular lens" RELATED [BTO:0000723] xref: AAO:0010348 xref: BTO:0000723 @@ -9222,7 +9223,7 @@ subset: vertebrate_core synonym: "inner layer of eyeball" EXACT [] synonym: "Netzhaut" RELATED [BTO:0001175] synonym: "retina of camera-type eye" EXACT [GO:0060041] -synonym: "retinas" RELATED PLURAL [ZFA:0000152] +synonym: "retinas" RELATED OMO:0003004 [ZFA:0000152] synonym: "tunica interna of eyeball" EXACT [] xref: AAO:0010352 xref: BAMS:R @@ -9332,7 +9333,7 @@ id: UBERON:0000971 name: ommatidium def: "The smallest morphological and functional unit of the compound eye that consists of a usually limited and often constant number of rhabdomeric photoreceptor cells, cornea-secreting epithelial cells, and interommatidial pigment cells, and may additionally contain crystalline cone cells." [PMID:21062451] subset: uberon_slim -synonym: "omatidia" RELATED PLURAL [] +synonym: "omatidia" RELATED OMO:0003004 [] synonym: "omatidium" EXACT [] xref: BTO:0001922 xref: HAO:0000666 @@ -9460,7 +9461,7 @@ def: "Paired endochondral long bone that extends between the pectoral girdle and subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "humeri" EXACT PLURAL [PHENOSCAPE:ad] +synonym: "humeri" EXACT OMO:0003004 [PHENOSCAPE:ad] synonym: "humerus bone" EXACT [] synonym: "mesomere 1 of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] synonym: "proximal metapterygial mesomere of pectoral appendage" RELATED HOMOLOGY [ISBN:0226313409] @@ -9681,7 +9682,7 @@ subset: vertebrate_core synonym: "articular joint" RELATED [BTO:0001686] synonym: "articulation" BROAD [VSAO:0000101] synonym: "joint" BROAD [FMA:7490, VSAO:0000101] -synonym: "joints" RELATED PLURAL [ZFA:0001596] +synonym: "joints" RELATED OMO:0003004 [ZFA:0001596] xref: AEO:0000182 xref: BTO:0001686 xref: CALOHA:TS-2023 @@ -9850,7 +9851,7 @@ subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim -synonym: "penes" RELATED PLURAL [] +synonym: "penes" RELATED OMO:0003004 [] synonym: "phallus" RELATED [] xref: BTO:0000405 xref: CALOHA:TS-0758 @@ -9892,7 +9893,7 @@ subset: vertebrate_core synonym: "animal reproductive system" RELATED [BTO:0000081] synonym: "genital system" NARROW [] synonym: "genital tract" RELATED [] -synonym: "genitalia" NARROW PLURAL [] +synonym: "genitalia" NARROW OMO:0003004 [] synonym: "Geschlechtsorgan" RELATED [BTO:0000081] synonym: "organa genitalia" RELATED [BTO:0000081] synonym: "reproductive tissue" RELATED [BTO:0000081] @@ -9959,7 +9960,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "gonada" EXACT [] -synonym: "gonads" RELATED PLURAL [ZFA:0000413] +synonym: "gonads" RELATED OMO:0003004 [ZFA:0000413] xref: AAO:0000213 xref: BILA:0000123 xref: BSA:0000079 @@ -10020,7 +10021,7 @@ synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic] synonym: "gonada of female reproductive system" EXACT [OBOL:automatic] synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic] synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic] -synonym: "ovaries" RELATED PLURAL [] +synonym: "ovaries" RELATED OMO:0003004 [] synonym: "ovarium" RELATED LATIN [Wikipedia:Ovary] synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039] synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic] @@ -10072,7 +10073,7 @@ subset: vertebrate_core synonym: "female reproductive tracts" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "ovarian duct" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ovarian tube" EXACT [http://orcid.org/0000-0002-6601-2165] -synonym: "oviducts" RELATED PLURAL [ZFA:0000560] +synonym: "oviducts" RELATED OMO:0003004 [ZFA:0000560] synonym: "tuba uterina" RELATED [BTO:0000980] synonym: "tuba uterinae" RELATED [BTO:0000980] synonym: "tubular parts of female reproductive system" RELATED [http://orcid.org/0000-0002-6601-2165] @@ -10113,8 +10114,8 @@ subset: efo_slim subset: uberon_slim synonym: "receptaculum seminis" RELATED [BTO:0001273] synonym: "seminal receptacle" RELATED [] -synonym: "spermatheca" RELATED PLURAL [] -synonym: "spermathecae" RELATED PLURAL [] +synonym: "spermatheca" RELATED OMO:0003004 [] +synonym: "spermathecae" RELATED OMO:0003004 [] xref: BTO:0001273 xref: EFO:0000977 xref: HAO:0000945 @@ -10175,7 +10176,7 @@ subset: pheno_slim subset: uberon_slim synonym: "distal oviductal region" RELATED [] synonym: "distal portion of oviduct" RELATED [] -synonym: "vaginae" RELATED PLURAL [] +synonym: "vaginae" RELATED OMO:0003004 [] xref: BTO:0000243 xref: CALOHA:TS-1103 xref: EFO:0000976 @@ -10296,7 +10297,7 @@ name: ejaculatory duct def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis[WP,unvetted]." [Wikipedia:Ejaculatory_duct] subset: efo_slim subset: uberon_slim -synonym: "ductus ejaculatorii" EXACT PLURAL [BTO:0001580] +synonym: "ductus ejaculatorii" EXACT OMO:0003004 [BTO:0001580] synonym: "ductus ejaculatorii" RELATED LATIN [Wikipedia:Ejaculatory_duct] synonym: "ductus ejaculatorius" EXACT [BTO:0001580] xref: BTO:0001580 @@ -10515,7 +10516,7 @@ def: "An airway through which respiratory air passes in organisms." [Wikipedia:T subset: grouping_class subset: uberon_slim synonym: "airway" BROAD [http://orcid.org/0000-0002-6601-2165] -synonym: "airways" BROAD PLURAL [http://orcid.org/0000-0002-6601-2165] +synonym: "airways" BROAD OMO:0003004 [http://orcid.org/0000-0002-6601-2165] xref: FMA:265130 xref: SCTID:361380005 xref: Wikipedia:Trachea @@ -11019,7 +11020,7 @@ def: "An enclosed, cable-like bundle of axons in the peripheral nervous system o subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "nerves" EXACT PLURAL [TAO:0007009] +synonym: "nerves" EXACT OMO:0003004 [TAO:0007009] synonym: "neural subtree" RELATED [FMA:65132] synonym: "peripheral nerve" EXACT [http://orcid.org/0000-0002-6601-2165] xref: AAO:0011070 @@ -11236,7 +11237,7 @@ synonym: "sense organs" EXACT [FMA:75259] synonym: "sense organs set" EXACT [FMA:75259] synonym: "sensory organ system" RELATED [] synonym: "sensory subsystem" EXACT [] -synonym: "sensory systems" EXACT PLURAL [TAO:0000282] +synonym: "sensory systems" EXACT OMO:0003004 [TAO:0000282] synonym: "set of sense organs" RELATED [FMA:75259] xref: AAO:0000555 xref: BAMS:SEN @@ -11687,7 +11688,7 @@ subset: uberon_slim synonym: "bud" RELATED [] synonym: "future organ" RELATED [] synonym: "placode" RELATED [FBbt:00005495] -synonym: "primordia" RELATED PLURAL [XAO:0003043] +synonym: "primordia" RELATED OMO:0003004 [XAO:0003043] synonym: "rudiment" RELATED [] xref: AEO:0000171 xref: BTO:0001886 @@ -11880,7 +11881,7 @@ name: corpus cardiacum def: "One of a pair of neurohemal organs located on the walls of the aorta just behind the brain. The corpora cardiaca release their store of PTTH only after they receive a signal from neurosecretory cells in the brain." [BTO:0000432, http://en.wikipedia.org/wiki/Corpus_cardiacum#Endocrine_system, http://www.cals.ncsu.edu/course/ent425/tutorial/endocrine.html] comment: will be ceded to arthropod anatomy ontology subset: efo_slim -synonym: "corpora cardiaca" RELATED PLURAL [BTO:0000432] +synonym: "corpora cardiaca" RELATED OMO:0003004 [BTO:0000432] xref: BTO:0000432 xref: EFO:0000380 xref: MAT:0000211 @@ -11896,7 +11897,7 @@ def: "One of a pair of separate or fused bodies in many insects that are sometim comment: will be ceded to arthropod anatomy ontology subset: efo_slim subset: uberon_slim -synonym: "corpora allata" RELATED PLURAL [BTO:0000291] +synonym: "corpora allata" RELATED OMO:0003004 [BTO:0000291] xref: BTO:0000291 xref: EFO:0000379 xref: MAT:0000210 @@ -11915,7 +11916,7 @@ def: "Prominent lobed neuropils found in annelids and all arthropods except crus subset: efo_slim subset: uberon_slim synonym: "corpora pedunculata" RELATED [FBbt:00005801, PMID:21062451] -synonym: "mushroom bodies" EXACT PLURAL [] +synonym: "mushroom bodies" EXACT OMO:0003004 [] xref: BTO:0002675 xref: EFO:0000925 xref: GAID:1231 @@ -12337,13 +12338,13 @@ subset: vertebrate_core synonym: "arcocentrum" NARROW INCONSISTENT [PMID:11746457] synonym: "autocentrum" NARROW [PMID:11746457, ZFA:0000126] synonym: "body of vertebra" EXACT [FMA:11945] -synonym: "centra" RELATED PLURAL [PHENOSCAPE:ad] +synonym: "centra" RELATED OMO:0003004 [PHENOSCAPE:ad] synonym: "corpus vertebra" EXACT LATIN [] -synonym: "corpus vertebrae" RELATED PLURAL [Wikipedia:Body_of_vertebra] +synonym: "corpus vertebrae" RELATED OMO:0003004 [Wikipedia:Body_of_vertebra] synonym: "corpus vertebrae (vertebrale)" EXACT [FMA:11945] synonym: "holocentrum" NARROW [PMID:11746457] synonym: "vertebral body" EXACT [FMA:11945] -synonym: "vertebral centra" RELATED PLURAL [PHENOSCAPE:ad] +synonym: "vertebral centra" RELATED OMO:0003004 [PHENOSCAPE:ad] synonym: "vertebral centrum" RELATED [MA:0001457] xref: AAO:0000697 xref: EMAPA:36588 @@ -12374,7 +12375,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "neural spine" RELATED [] -synonym: "neural spines" RELATED PLURAL [ZFA:0001336] +synonym: "neural spines" RELATED OMO:0003004 [ZFA:0001336] synonym: "processus spinosus" EXACT [] synonym: "processus spinosus vertebrae" EXACT [] synonym: "spine of verterba" RELATED [FMA:11948] @@ -12451,7 +12452,7 @@ def: "Paired processes at the cephalic end of the neural arch. The articular fac comment: EDITOR_NOTE TODO - add distinct classes for hemal vs neural? subset: vertebrate_core synonym: "cranial articular process of vertebra" EXACT [] -synonym: "neural prezygapophyses" RELATED PLURAL [TAO:0001325] +synonym: "neural prezygapophyses" RELATED OMO:0003004 [TAO:0001325] synonym: "neural prezygapophysis" NARROW DUBIOUS [ZFA:0001325] synonym: "neural prezygopophyses" NARROW DUBIOUS [ZFA:0001325] synonym: "prezygapophysis" EXACT [] @@ -12480,7 +12481,7 @@ subset: pheno_slim subset: vertebrate_core synonym: "caudal articular process of vertebra" EXACT [] synonym: "inferior articular process of vertebra" EXACT HUMAN_PREFERRED [FMA:11954] -synonym: "neural postzygapophyses" RELATED PLURAL [TAO:0000681] +synonym: "neural postzygapophyses" RELATED OMO:0003004 [TAO:0000681] synonym: "neural postzygapophysis" NARROW DUBIOUS [ZFA:0000681] synonym: "neural postzygopophyses" RELATED [TAO:0000681] synonym: "neural postzygopophysis" EXACT [ZFA:0000681] @@ -12872,7 +12873,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "caudal vertebra" BROAD SENSU [FMA:12527] -synonym: "caudal vertebrae" EXACT PLURAL [] +synonym: "caudal vertebrae" EXACT OMO:0003004 [] synonym: "caudal vertebral bone" EXACT [] synonym: "caudal vertebral bone element" EXACT [] synonym: "coccygea" RELATED [MA:0001420] @@ -13192,7 +13193,7 @@ subset: vertebrate_core synonym: "m. sternohyoideus" EXACT [] synonym: "musculus sternohyoideus" RELATED LATIN [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoid" EXACT [Wikipedia:Sternohyoid_muscle] -synonym: "sternohyoidei" RELATED PLURAL [Wikipedia:Sternohyoid_muscle] +synonym: "sternohyoidei" RELATED OMO:0003004 [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoideus" EXACT [Wikipedia:Sternohyoid_muscle] synonym: "sternohyoideus muscle" EXACT [Wikipedia:Sternohyoid_muscle] xref: EMAPA:19271 @@ -13243,7 +13244,7 @@ def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than subset: uberon_slim synonym: "musculus sternothyroideus" RELATED LATIN [Wikipedia:Sternothyroid_muscle] synonym: "sterno-thyroideus" RELATED [Wikipedia:Sternothyroid_muscle] -synonym: "sternothyreoidei" RELATED PLURAL [Wikipedia:Sternothyroid_muscle] +synonym: "sternothyreoidei" RELATED OMO:0003004 [Wikipedia:Sternothyroid_muscle] synonym: "sternothyreoideus" RELATED [Wikipedia:Sternothyroid_muscle] synonym: "sternothyroid" EXACT [] synonym: "sternothyroideus" RELATED [Wikipedia:Sternothyroid_muscle] @@ -13334,7 +13335,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "dorsal latissimus muscle" EXACT [] -synonym: "latissimi dorsi" EXACT PLURAL [] +synonym: "latissimi dorsi" EXACT OMO:0003004 [] synonym: "latissimus dorsi" EXACT [] synonym: "musculus latissimus dorsi" EXACT [] synonym: "musculus latissimus dorsi" RELATED LATIN [Wikipedia:Latissimus_dorsi_muscle] @@ -14194,7 +14195,7 @@ def: "Vein that carries blood away from the liver[ZFA]." [https://sourceforge.ne subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "hepatic veins" RELATED PLURAL [] +synonym: "hepatic veins" RELATED OMO:0003004 [] synonym: "liver vein" EXACT [OBOL:automatic] synonym: "vein of liver" EXACT [OBOL:automatic] synonym: "vena hepatica" EXACT LATIN [] @@ -14441,9 +14442,9 @@ subset: pheno_slim subset: uberon_slim synonym: "blind intestine" RELATED [BTO:0000166] synonym: "blindgut" RELATED [BTO:0000166] -synonym: "caeca" NARROW PLURAL [NCBITaxon:8782] +synonym: "caeca" NARROW OMO:0003004 [NCBITaxon:8782] synonym: "caecum" EXACT [VHOG:0001559] -synonym: "ceca" NARROW PLURAL [NCBITaxon:8782] +synonym: "ceca" NARROW OMO:0003004 [NCBITaxon:8782] synonym: "cecum" EXACT [FMA:14541] synonym: "intestinum caecum" RELATED [BTO:0000166] synonym: "intestinum crassum caecum" EXACT [] @@ -15270,7 +15271,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "arteria renalis" RELATED LATIN [Wikipedia:Renal_artery] synonym: "renal arterial tree" EXACT [] -synonym: "renal arteries" RELATED PLURAL [] +synonym: "renal arteries" RELATED OMO:0003004 [] xref: AAO:0010223 xref: BTO:0001165 xref: EFO:0002552 @@ -16005,13 +16006,13 @@ def: "The tiny hair-like projections that protrude from the inside of the small subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "enteric villi" EXACT PLURAL [HP:0011473] +synonym: "enteric villi" EXACT OMO:0003004 [HP:0011473] synonym: "enteric villous" EXACT [HP:0011473] synonym: "enteric villus" EXACT [HP:0011473] -synonym: "intestinal villi" EXACT PLURAL [ZFA:0005125] +synonym: "intestinal villi" EXACT OMO:0003004 [ZFA:0005125] synonym: "intestinal villus layer" RELATED [] synonym: "small intestine villus" RELATED [MA:0001563] -synonym: "villi intestinales" EXACT PLURAL [] +synonym: "villi intestinales" EXACT OMO:0003004 [] synonym: "villi intestinales" RELATED LATIN [Wikipedia:Intestinal_villus] synonym: "villus" EXACT [BTO:0003121] synonym: "villus intestinalis (intestinum tenue)" EXACT [FMA:15072] @@ -16638,7 +16639,7 @@ subset: organ_slim subset: uberon_slim synonym: "organ of Zuckerkandl" EXACT [] synonym: "para-aortic body" RELATED [] -synonym: "paraganglia of Zuckerkandl" RELATED PLURAL [] +synonym: "paraganglia of Zuckerkandl" RELATED OMO:0003004 [] synonym: "paraganglion of Zuckerkandl" EXACT [EMAPA:18223] xref: EMAPA:18223 xref: FMA:15647 @@ -17325,7 +17326,7 @@ subset: pheno_slim synonym: "acinus pancreaticus" EXACT LATIN [FMA:16011] synonym: "pancreas acinus" EXACT [] synonym: "pancreatic acinar" RELATED [] -synonym: "pancreatic acini" RELATED PLURAL [] +synonym: "pancreatic acini" RELATED OMO:0003004 [] xref: EMAPA:35651 xref: FMA:16011 xref: MA:0002417 @@ -17394,7 +17395,7 @@ name: trabecula of spleen def: "A trabecula that is part of a spleen." [OBOL:automatic] synonym: "spleen trabeculum" EXACT [] synonym: "splenic trabecula" EXACT [] -synonym: "trabeculae of spleen" EXACT PLURAL [] +synonym: "trabeculae of spleen" EXACT OMO:0003004 [] xref: EMAPA:35808 xref: FMA:16027 xref: MA:0000758 @@ -17838,7 +17839,7 @@ subset: pheno_slim subset: uberon_slim synonym: "canal of Hering" RELATED [] synonym: "canal of Herring" EXACT [FMA:17545] -synonym: "canals of Hering" RELATED PLURAL [Wikipedia:Canals_of_Hering] +synonym: "canals of Hering" RELATED OMO:0003004 [Wikipedia:Canals_of_Hering] synonym: "cholangiole" EXACT [FMA:17545] synonym: "duct of Herring" RELATED [Wikipedia:Canals_of_Hering] synonym: "ductus interlobularis bilifer" EXACT LATIN [FMA:17545, FMA:TA] @@ -17866,7 +17867,7 @@ def: "An intercellular channel that takes up bile from hepatocytes, transporting subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "bile canaliculi" RELATED PLURAL [Wikipedia:Bile_canaliculus] +synonym: "bile canaliculi" RELATED OMO:0003004 [Wikipedia:Bile_canaliculus] synonym: "bile capillary" RELATED [BTO:0002841] synonym: "biliary canaliculus" RELATED [BTO:0002841] xref: BTO:0002841 @@ -21586,7 +21587,7 @@ synonym: "finger phalanx" EXACT [OBOL:automatic] synonym: "hand digit phalanx" EXACT [OBOL:automatic] synonym: "hand phalanx" EXACT [MA:0000306] synonym: "manual phalanx" EXACT [] -synonym: "phalanges of fore digit" RELATED PLURAL [AAO:0000947] +synonym: "phalanges of fore digit" RELATED OMO:0003004 [AAO:0000947] synonym: "phalanx of digit of hand" EXACT [OBOL:automatic] synonym: "phalanx of digitus manus" EXACT [OBOL:automatic] synonym: "phalanx of finger" EXACT [FMA:23914] @@ -21619,7 +21620,7 @@ subset: pheno_slim subset: uberon_slim synonym: "bone epiphysis" EXACT [] synonym: "end of long bone" EXACT [] -synonym: "epiphyses" EXACT PLURAL [] +synonym: "epiphyses" EXACT OMO:0003004 [] synonym: "long bone epiphysis" EXACT [] xref: AAO:0000742 xref: BTO:0000413 @@ -21649,7 +21650,7 @@ subset: pheno_slim subset: uberon_slim synonym: "diaphyseal end of long bone" EXACT [] synonym: "long bone metaphysis" EXACT [] -synonym: "metaphyses" EXACT PLURAL [] +synonym: "metaphyses" EXACT OMO:0003004 [] xref: EMAPA:35509 xref: FMA:24014 xref: MA:0001363 @@ -21908,8 +21909,8 @@ synonym: "bone of tarsal skeleton" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "bone of tarsus" EXACT [FMA:24491] synonym: "bony tarsus" RELATED [BTO:0002343] synonym: "hind mesopodium" RELATED [AAO:0000220] -synonym: "ossa tarsalia" EXACT PLURAL [FMA:71339, FMA:TA] -synonym: "ossa tarsi" EXACT PLURAL [FMA:71339, FMA:TA] +synonym: "ossa tarsalia" EXACT OMO:0003004 [FMA:71339, FMA:TA] +synonym: "ossa tarsi" EXACT OMO:0003004 [FMA:71339, FMA:TA] synonym: "tarsal" RELATED [BTO:0002343] synonym: "tarsus osseus" RELATED [BTO:0002343] xref: BTO:0002343 @@ -21938,7 +21939,7 @@ def: "The metatarsus or metatarsal bones are a group of five long bones in the p subset: pheno_slim subset: uberon_slim synonym: "metatarsal" EXACT [] -synonym: "ossa metatarsalia" RELATED PLURAL [BTO:0002347] +synonym: "ossa metatarsalia" RELATED OMO:0003004 [BTO:0002347] synonym: "ossa metatarsi" RELATED [BTO:0002347] xref: BTO:0002347 xref: EMAPA:32940 @@ -21972,7 +21973,7 @@ synonym: "digitus pedis phalanx" EXACT [OBOL:automatic] synonym: "foot digit phalanx" EXACT [OBOL:automatic] synonym: "foot phalanx" EXACT [MA:0000305] synonym: "pedal phalanx" EXACT [] -synonym: "phalanges of hind digit" RELATED PLURAL [AAO:0000930] +synonym: "phalanges of hind digit" RELATED OMO:0003004 [AAO:0000930] synonym: "phalanx of digit of foot" EXACT [OBOL:automatic] synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic] synonym: "phalanx of foot digit" EXACT [OBOL:automatic] @@ -22004,7 +22005,7 @@ def: "The postaxial bone of the proximal tarsals series[Phenoscape]." [https://g subset: pheno_slim subset: uberon_slim synonym: "calcaneal bone" EXACT [BTO:0002355] -synonym: "calcanei" RELATED PLURAL [] +synonym: "calcanei" RELATED OMO:0003004 [] synonym: "calcaneum" EXACT [MA:0001348] synonym: "calcaneus bone" EXACT [UBERON:cjm] synonym: "fibulare" RELATED [AAO:0000913, ISBN:0073040584, VSAO:0005016, Wikipedia:Calcaneus] @@ -22285,7 +22286,7 @@ name: skin of lip def: "A zone of skin that is part of a lip [Automatically generated definition]." [OBOL:automatic] synonym: "lip skin" EXACT [] synonym: "lip zone of skin" EXACT [OBOL:automatic] -synonym: "skin of lips" RELATED PLURAL [] +synonym: "skin of lips" RELATED OMO:0003004 [] synonym: "zone of skin of lip" EXACT [OBOL:automatic] xref: EMAPA:37643 {source="MA:th"} xref: FMA:24764 @@ -22503,7 +22504,7 @@ subset: pheno_slim subset: uberon_slim synonym: "digit of foot" EXACT [] synonym: "digit of terminal segment of lower limb" EXACT [OBOL:automatic] -synonym: "digiti pedis" EXACT PLURAL [FMA:70664, FMA:TA] +synonym: "digiti pedis" EXACT OMO:0003004 [FMA:70664, FMA:TA] synonym: "digiti pedis" RELATED LATIN [Wikipedia:Toe] synonym: "digitipedis" RELATED [BTO:0002348] synonym: "digitus pedis" EXACT [] @@ -22731,7 +22732,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "bone" RELATED [AEO:0000082, BTO:0000140, MA:0001459, VHOG:0001190] synonym: "bone organ" EXACT [FMA:5018] -synonym: "bones" RELATED PLURAL [ZFA:0001514] +synonym: "bones" RELATED OMO:0003004 [ZFA:0001514] xref: AAO:0000047 xref: AEO:0000082 xref: BTO:0000140 @@ -23062,7 +23063,7 @@ synonym: "foot joint" EXACT [] synonym: "hind limb autopod joint" EXACT [OBOL:automatic] synonym: "joint of pes" EXACT [] synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic] -synonym: "joints of foot" EXACT PLURAL [FMA:71349] +synonym: "joints of foot" EXACT OMO:0003004 [FMA:71349] synonym: "pedal joint" EXACT [] xref: EMAPA:32949 xref: FMA:35194 @@ -24237,7 +24238,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "arteria vertebralis" RELATED LATIN [Wikipedia:Vertebral_artery] -synonym: "vertebral arteries" RELATED PLURAL [ZFA:0005033] +synonym: "vertebral arteries" RELATED OMO:0003004 [ZFA:0005033] xref: EHDAA2:0002192 xref: EHDAA:5328 xref: EMAPA:17314 @@ -25781,7 +25782,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "m. rectus medialis" EXACT [] -synonym: "medial recti" RELATED PLURAL [ZFA:0000301] +synonym: "medial recti" RELATED OMO:0003004 [ZFA:0000301] synonym: "medial rectus" EXACT [FMA:49037] synonym: "medial rectus extraocular muscle" EXACT [MA:0001281] synonym: "medial rectus muscle" EXACT [] @@ -25813,7 +25814,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "lateral extraocular muscle" RELATED [] -synonym: "lateral recti" RELATED PLURAL [ZFA:0000383] +synonym: "lateral recti" RELATED OMO:0003004 [ZFA:0000383] synonym: "lateral rectus" EXACT [FMA:49038] synonym: "lateral rectus extraocular muscle" EXACT [MA:0001280] synonym: "lateral rectus muscle" EXACT [] @@ -26636,7 +26637,7 @@ synonym: "arterial subtree" EXACT [] synonym: "arterial system" RELATED [] synonym: "arterial tree organ part" EXACT [] synonym: "arterial vessel" RELATED [] -synonym: "arteries" EXACT PLURAL [TAO:0000005] +synonym: "arteries" EXACT OMO:0003004 [TAO:0000005] xref: AAO:0010211 xref: AEO:0000208 xref: BTO:0000573 @@ -26681,7 +26682,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "vascular element" RELATED [EMAPA:th] synonym: "vena" RELATED LATIN [Wikipedia:Vein] -synonym: "venae" RELATED PLURAL [VHOG:0001743] +synonym: "venae" RELATED OMO:0003004 [VHOG:0001743] synonym: "venous subtree" BROAD [] synonym: "venous tree organ part" EXACT [] synonym: "venous vessel" BROAD [] @@ -27710,7 +27711,7 @@ relationship: tributary_of UBERON:0005486 {source="FMA/obol"} ! venous dural sin id: UBERON:0001674 name: masseteric vein def: "A plexiform vein accompanying the masseteric artery that empty into the pterygoid venous plexus." [http://www.drugs.com/dict/masseteric-veins.html] -synonym: "masseteric veins" RELATED PLURAL [] +synonym: "masseteric veins" RELATED OMO:0003004 [] xref: EMAPA:37168 {source="MA:th"} xref: FMA:52519 xref: MA:0002167 @@ -27735,11 +27736,11 @@ synonym: "ganglion of trigeminal nerve" RELATED [BTO:0001231] synonym: "ganglion semilunare" RELATED LATIN [Wikipedia:Trigeminal_ganglion] synonym: "ganglion trigeminale" RELATED LATIN [BTO:0001231, Wikipedia:Trigeminal_ganglion] synonym: "Gasser's ganglion" RELATED [BTO:0001231] -synonym: "Gasserian ganglia" RELATED PLURAL [Wikipedia:Trigeminal_ganglion] +synonym: "Gasserian ganglia" RELATED OMO:0003004 [Wikipedia:Trigeminal_ganglion] synonym: "Gasserian ganglion" EXACT [Wikipedia:Trigeminal_ganglion] synonym: "gV" RELATED [] synonym: "semilunar ganglion" EXACT [ISBN:0471888893] -synonym: "trigeminal ganglia" RELATED PLURAL [] +synonym: "trigeminal ganglia" RELATED OMO:0003004 [] synonym: "trigeminal V ganglion" EXACT [MA:0001080] synonym: "trigeminus ganglion" RELATED [] xref: AAO:0011107 @@ -27949,8 +27950,8 @@ def: "One of two small oblong bones, varying in size and form in different indiv subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "nasal bones" RELATED PLURAL [ZFA:0000365] -synonym: "nasals" RELATED PLURAL [TAO:0000365] +synonym: "nasal bones" RELATED OMO:0003004 [ZFA:0000365] +synonym: "nasals" RELATED OMO:0003004 [TAO:0000365] synonym: "os nasale" RELATED LATIN [Wikipedia:Nasal_bone] xref: AAO:0000312 xref: EMAPA:19202 @@ -28142,13 +28143,13 @@ synonym: "auditory bone" EXACT [] synonym: "auditory ossicle" RELATED [MA:0000254] synonym: "ear bone" RELATED [MA:0000254] synonym: "ear ossicle" RELATED [] -synonym: "ear ossicles" RELATED PLURAL [] +synonym: "ear ossicles" RELATED OMO:0003004 [] synonym: "middle ear bone" RELATED [] synonym: "middle ear ossicle" EXACT [MP:0005105] synonym: "ossicle" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle] synonym: "ossicle of ear" RELATED [] synonym: "ossicle of inner ear" RELATED [] -synonym: "ossicular chain" RELATED PLURAL [] +synonym: "ossicular chain" RELATED OMO:0003004 [] xref: AAO:0011015 xref: EHDAA2:0001183 xref: EHDAA:5697 @@ -28402,7 +28403,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "exoccipital" EXACT [FMA:52859] -synonym: "exoccipitals" EXACT PLURAL [TAO:0000661] +synonym: "exoccipitals" EXACT OMO:0003004 [TAO:0000661] synonym: "lateral part of occipital bone" EXACT [FMA:52859] synonym: "pars lateralis" RELATED LATIN [Wikipedia:Lateral_parts_of_occipital_bone] synonym: "pars lateralis ossis occipitalis" EXACT LATIN [FMA:52859, FMA:TA] @@ -28567,7 +28568,7 @@ synonym: "nerve of Wrisberg" RELATED [] synonym: "nervus intermedius" RELATED LATIN [FMA:53410, FMA:TA] synonym: "pars intermedii of Wrisberg" RELATED [] synonym: "sensory component of the VIIth (facial) nerve" EXACT [] -synonym: "sensory roots of facial nerves" RELATED PLURAL [ZFA:0000679] +synonym: "sensory roots of facial nerves" RELATED OMO:0003004 [ZFA:0000679] synonym: "Wrisberg's nerve" RELATED [FMA:53410] xref: BAMS:imn xref: BAMS:iVIIn @@ -28668,7 +28669,7 @@ subset: uberon_slim synonym: "blepharis" RELATED [] synonym: "cilia" RELATED LATIN [Wikipedia:Eyelash] synonym: "cilium" RELATED LATIN [Wikipedia:Eyelash] -synonym: "eyelid cilia" RELATED PLURAL [] +synonym: "eyelid cilia" RELATED OMO:0003004 [] synonym: "eyelid cilium" EXACT [] synonym: "hair of eyelid" RELATED [] xref: FMA:53669 @@ -28962,11 +28963,11 @@ name: eyelid def: "A fold of skin that covers and protects part of the eyeball. Examples: upper eyelid, lower eyelid, nictitating membrane." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim -synonym: "blephara" RELATED PLURAL [] +synonym: "blephara" RELATED OMO:0003004 [] synonym: "blepharon" EXACT [] synonym: "eye lid" EXACT [] synonym: "palpebra" EXACT [] -synonym: "palpebrae" RELATED PLURAL [] +synonym: "palpebrae" RELATED OMO:0003004 [] xref: BTO:0002241 xref: EHDAA2:0000487 xref: EHDAA:9037 @@ -29219,7 +29220,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "Me5" BROAD OMO:0003000 [BIRNLEX:1010, NIFSTD:NeuroNames_abbrevSource] -synonym: "mesencephalic nuclei of trigeminal nerves" RELATED PLURAL [ZFA:0000312] +synonym: "mesencephalic nuclei of trigeminal nerves" RELATED OMO:0003004 [ZFA:0000312] synonym: "mesencephalic nucleus" BROAD [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] synonym: "mesencephalic nucleus of the trigeminal" RELATED [BAMS:MEV] synonym: "mesencephalic nucleus of the trigeminal nerve" RELATED [NeuroNames:558] @@ -29513,11 +29514,11 @@ def: "A specialized receptor organ that is a collection of cells spanning the gu subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "caliculus gustatorius" RELATED PLURAL [Wikipedia:Taste_bud] -synonym: "taste buds" RELATED PLURAL [Wikipedia:Taste_bud] +synonym: "caliculus gustatorius" RELATED OMO:0003004 [Wikipedia:Taste_bud] +synonym: "taste buds" RELATED OMO:0003004 [Wikipedia:Taste_bud] synonym: "taste-bud" RELATED [Wikipedia:Taste_bud] synonym: "tastebud" EXACT [Wikipedia:Taste_bud] -synonym: "tastebuds" RELATED PLURAL [Wikipedia:Taste_bud] +synonym: "tastebuds" RELATED OMO:0003004 [Wikipedia:Taste_bud] xref: AAO:0010573 xref: BIRNLEX:4101 xref: BTO:0000989 @@ -29885,7 +29886,7 @@ name: laryngeal cartilage def: "The cartilaginous structures that support the larynx." [MP:0002256] subset: pheno_slim synonym: "cartilage of larynx" EXACT [FMA:55108] -synonym: "cartilagines laryngeales" EXACT PLURAL [] +synonym: "cartilagines laryngeales" EXACT OMO:0003004 [] synonym: "larynx cartilage" EXACT [VHOG:0001550] xref: BTO:0003660 xref: EHDAA:8157 @@ -30322,7 +30323,7 @@ synonym: "auricle of external ear" EXACT [] synonym: "auricula" EXACT [Wikipedia:Auricula] synonym: "auricula (auris externa)" EXACT [] synonym: "pinna of ear" EXACT [] -synonym: "pinnae" RELATED PLURAL [] +synonym: "pinnae" RELATED OMO:0003004 [] xref: EHDAA2:0001467 xref: EMAPA:17589 xref: EV:0100355 @@ -30689,8 +30690,8 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] -synonym: "irides" RELATED PLURAL [] -synonym: "irises" RELATED PLURAL [VHOG:0000101] +synonym: "irides" RELATED OMO:0003004 [] +synonym: "irises" RELATED OMO:0003004 [VHOG:0000101] xref: AAO:0010347 xref: BTO:0000653 xref: CALOHA:TS-0491 @@ -30744,7 +30745,7 @@ def: "The central circular aperture of the iris through which light rays enter t subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "pupils" RELATED PLURAL [ZFA:0001283] +synonym: "pupils" RELATED OMO:0003004 [ZFA:0001283] xref: AAO:0010351 xref: FMA:58252 xref: GAID:918 @@ -30889,7 +30890,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "anterior uvea" RELATED [] -synonym: "ciliary bodies" RELATED PLURAL [VHOG:0000102] +synonym: "ciliary bodies" RELATED OMO:0003004 [VHOG:0000102] synonym: "corpus ciliare" RELATED LATIN [Wikipedia:Ciliary_body] synonym: "ocular ciliary body" EXACT [] xref: AAO:0010341 @@ -31054,7 +31055,7 @@ synonym: "nerve of vertebral column" EXACT [OBOL:automatic] synonym: "nervi spinales" RELATED LATIN [Wikipedia:Spinal_nerve] synonym: "spinal column nerve" EXACT [OBOL:automatic] synonym: "spinal nerve tree" EXACT [] -synonym: "spinal nerves" RELATED PLURAL [BAMS:spin] +synonym: "spinal nerves" RELATED OMO:0003004 [BAMS:spin] synonym: "spine nerve" EXACT [OBOL:automatic] synonym: "vertebral column nerve" EXACT [OBOL:automatic] xref: AAO:0011101 @@ -31290,7 +31291,7 @@ subset: vertebrate_core synonym: "layer of rods and cones" RELATED [] synonym: "retina photoreceptor layer" EXACT [] synonym: "retinal photoreceptor layer" EXACT [ZFA:0000143] -synonym: "retinal photoreceptor layers" RELATED PLURAL [ZFA:0000143] +synonym: "retinal photoreceptor layers" RELATED OMO:0003004 [ZFA:0000143] synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] synonym: "stratum segmentorum externorum et internorum retinae" EXACT LATIN [FMA:58680, FMA:TA] xref: EMAPA:35686 @@ -31324,7 +31325,7 @@ synonym: "external limiting membrane" EXACT [ZFA:0001331] synonym: "external limiting membrane of retina" EXACT [] synonym: "outer limiting membrane" EXACT [XAO:0003224] synonym: "outer limiting membrane of retina" EXACT [] -synonym: "outer limiting membranes" RELATED PLURAL [ZFA:0001331] +synonym: "outer limiting membranes" RELATED OMO:0003004 [ZFA:0001331] synonym: "retina external limiting lamina" EXACT [] synonym: "retina outer limiting membrane" EXACT [MP:0010236] synonym: "stratum limitans externum (retina)" EXACT [] @@ -31357,7 +31358,7 @@ synonym: "outer nuclear layer" BROAD [] synonym: "retina outer nuclear layer" EXACT [] synonym: "retina, outer nuclear layer" RELATED [BAMS:Ronl] synonym: "retinal outer nuclear layer" EXACT [] -synonym: "retinal outer nuclear layers" RELATED PLURAL [ZFA:0001464] +synonym: "retinal outer nuclear layers" RELATED OMO:0003004 [ZFA:0001464] synonym: "stratum nucleare externum (retina)" EXACT [] synonym: "stratum nucleare externum retinae" EXACT LATIN [FMA:58684, FMA:TA] xref: BAMS:Ronl @@ -31392,7 +31393,7 @@ synonym: "outer plexiform layer" EXACT [BTO:0003174] synonym: "retina outer plexiform layer" EXACT [] synonym: "retina, outer plexiform layer" RELATED [BAMS:Ropl] synonym: "retinal outer plexiform layer" EXACT [] -synonym: "retinal outer plexiform layers" RELATED PLURAL [ZFA:0001330] +synonym: "retinal outer plexiform layers" RELATED OMO:0003004 [ZFA:0001330] synonym: "stratum plexiforme externum" EXACT [] synonym: "stratum plexiforme externum retinae" EXACT LATIN [FMA:58685, FMA:TA] xref: BAMS:Ropl @@ -31514,7 +31515,7 @@ synonym: "nerve fiber layer" BROAD [ZFA:0001619] synonym: "neural retina nerve fibre layer" RELATED [EMAPA:18591] synonym: "optic fiber layer" EXACT [DMBA:15652] synonym: "optic fiber layer" RELATED [VHOG:0001169] -synonym: "optic fiber layers" RELATED PLURAL [TAO:0002212] +synonym: "optic fiber layers" RELATED OMO:0003004 [TAO:0002212] synonym: "retina nerve fiber layer" EXACT [] synonym: "stratum neurofibrarum (retina)" EXACT [] synonym: "stratum neurofibrarum retinae" EXACT LATIN [FMA:58688, FMA:TA] @@ -31547,7 +31548,7 @@ subset: vertebrate_core synonym: "ILM" BROAD OMO:0003000 [ZFA:0001029] synonym: "inner limiting membrane" EXACT [XAO:0003222] synonym: "inner limiting membrane of retina" EXACT [] -synonym: "inner limiting membranes" RELATED PLURAL [ZFA:0001029] +synonym: "inner limiting membranes" RELATED OMO:0003004 [ZFA:0001029] synonym: "internal limiting lamina of retina" EXACT [] synonym: "internal limiting membrane of retina" EXACT [] synonym: "retina inner limiting membrane" EXACT [MP:0010235] @@ -31935,9 +31936,9 @@ synonym: "ganglia trunci sympathici" RELATED LATIN [Wikipedia:Paravertebral_gang synonym: "ganglion of sympathetic trunk" EXACT [] synonym: "ganglion trunci sympathetici" EXACT LATIN [] synonym: "ganglion trunci sympathici" EXACT LATIN [FMA:5891, FMA:TA] -synonym: "paravertebral ganglia" RELATED PLURAL [FMA:80128] +synonym: "paravertebral ganglia" RELATED OMO:0003004 [FMA:80128] synonym: "paravertebral ganglion" RELATED [Wikipedia:Paravertebral_ganglia] -synonym: "sympathetic chain ganglia" RELATED PLURAL [Wikipedia:Paravertebral_ganglia] +synonym: "sympathetic chain ganglia" RELATED OMO:0003004 [Wikipedia:Paravertebral_ganglia] synonym: "sympathetic chain ganglion" EXACT [] xref: EHDAA2:0001403 xref: EHDAA:5635 @@ -32025,8 +32026,8 @@ def: "The mucous membrane that lines the inner surface of the eyelids and the fr subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "conjunctivae" EXACT PLURAL [XAO:0000182] -synonym: "conjunctivas" EXACT PLURAL [XAO:0000182] +synonym: "conjunctivae" EXACT OMO:0003004 [XAO:0000182] +synonym: "conjunctivas" EXACT OMO:0003004 [XAO:0000182] synonym: "tunica conjunctiva" EXACT LATIN [FMA:TA] synonym: "wall of conjunctival sac" EXACT [FMA:59011] xref: AAO:0010343 @@ -32450,7 +32451,7 @@ synonym: "lacrimal gland secretion" EXACT [] synonym: "lacrimal secretion" EXACT [] synonym: "tear" EXACT [FMA:59756] synonym: "tear fluid" RELATED [BTO:0001499] -synonym: "tears" EXACT PLURAL [] +synonym: "tears" EXACT OMO:0003004 [] xref: BTO:0001499 xref: CALOHA:TS-1016 xref: EMAPA:36537 @@ -32802,10 +32803,10 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "canalis semicircularis" RELATED LATIN [Wikipedia:Semicircular_canal] -synonym: "ductus semicirculares" RELATED PLURAL [BTO:0003383, FMA:71880, FMA:TA] +synonym: "ductus semicirculares" RELATED OMO:0003004 [BTO:0003383, FMA:71880, FMA:TA] synonym: "scc" RELATED [TAO:0000431] -synonym: "semicircular canals" EXACT PLURAL [TAO:0000431] -synonym: "semicircular ducts" RELATED PLURAL [XAO:0000198] +synonym: "semicircular canals" EXACT OMO:0003004 [TAO:0000431] +synonym: "semicircular ducts" RELATED OMO:0003004 [XAO:0000198] xref: AAO:0011098 xref: BTO:0003383 xref: CALOHA:TS-2164 @@ -32926,12 +32927,12 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "cochleae" RELATED PLURAL [] +synonym: "cochleae" RELATED OMO:0003004 [] synonym: "cochlear duct" RELATED [] synonym: "cochlear organ" RELATED [BTO:0000267] synonym: "cochlear part of bony labyrinth" EXACT [] synonym: "lagena" EXACT SENSU [XAO:0000197] -synonym: "lagenas" RELATED PLURAL [ZFA:0000374] +synonym: "lagenas" RELATED OMO:0003004 [ZFA:0000374] xref: AAO:0000253 xref: BIRNLEX:1190 xref: BTO:0000267 @@ -33292,7 +33293,7 @@ property_value: homology_notes "In gnathostomes, each membranous labyrinth has t id: UBERON:0001856 name: semicircular duct def: "Any of the three loop-shaped membranous inner tubular parts of the semicircular canals that are about one-fourth the diameter of the corresponding outer bony canals, that communicate at each end with the utricle, and that have near one end an expanded ampulla containing an area of sensory epithelium." [http://dictionary.reference.com/browse/semicircular+duct] -synonym: "ductus semicirculares" RELATED PLURAL [FMA:71880, FMA:TA] +synonym: "ductus semicirculares" RELATED OMO:0003004 [FMA:71880, FMA:TA] synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: EMAPA:32830 xref: FMA:61122 @@ -33952,7 +33953,7 @@ id: UBERON:0001880 name: bed nucleus of stria terminalis def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010, Wikipedia:Stria_terminalis#Bed_nucleus_of_the_stria_terminalis] subset: efo_slim -synonym: "bed nuclei of the stria terminalis" EXACT PLURAL [ABA:BST] +synonym: "bed nuclei of the stria terminalis" EXACT OMO:0003004 [ABA:BST] synonym: "bed nuclei of the stria terminalis" RELATED [BAMS:BST] synonym: "bed nucleus of the stria terminalis" EXACT [BIRNLEX:724] synonym: "bed nucleus stria terminalis (Johnson)" EXACT [BIRNLEX:724] @@ -34428,10 +34429,10 @@ subset: uberon_slim subset: vertebrate_core synonym: "future rhombencephalon" RELATED [MIAA:0000272] synonym: "hindbrain neuromere" EXACT [] -synonym: "hindbrain neuromeres" EXACT PLURAL [DHBA:HNM] +synonym: "hindbrain neuromeres" EXACT OMO:0003004 [DHBA:HNM] synonym: "hindbrain segment" BROAD [ZFA:0001064] synonym: "rhombomere" EXACT [] -synonym: "rhombomeres" RELATED PLURAL [VHOG:0000672] +synonym: "rhombomeres" RELATED OMO:0003004 [VHOG:0000672] synonym: "segment of hindbrain" BROAD [ZFA:0001064] xref: DHBA:12664 xref: EFO:0003617 @@ -34685,7 +34686,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "Th" BROAD OMO:0003000 [BIRNLEX:954, NIFSTD:NeuroNames_abbrevSource, PMID:23375746] synonym: "thalamencephalon" RELATED LATIN [NeuroNames:300] -synonym: "thalami" RELATED PLURAL [VHOG:0000657] +synonym: "thalami" RELATED OMO:0003004 [VHOG:0000657] synonym: "thalamus" BROAD [FMA:62007, MA:0000179] synonym: "thalamus opticus" RELATED LATIN [NeuroNames:300] synonym: "wider thalamus" EXACT [PMCID:PMC3345571] @@ -35187,7 +35188,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "optic lemniscus" EXACT [] -synonym: "optic tracts" RELATED PLURAL [ZFA:0000252] +synonym: "optic tracts" RELATED OMO:0003004 [ZFA:0000252] synonym: "tractus optici" RELATED LATIN [NeuroNames:460] synonym: "tractus opticus" RELATED LATIN [Wikipedia:Optic_tract] synonym: "visual pathway" RELATED [GAID:735] @@ -35270,7 +35271,7 @@ synonym: "fasciculus longitudinalis telencephali medialis" RELATED LATIN [NeuroN synonym: "fasciculus medialis telencephali" RELATED LATIN [Wikipedia:Medial_forebrain_bundle] synonym: "fasciculus medialis telencephalicus" RELATED LATIN [NeuroNames:433] synonym: "fasciculus prosencephalicus medialis" RELATED LATIN [NeuroNames:433] -synonym: "medial forebrain bundles" RELATED PLURAL [ZFA:0005111] +synonym: "medial forebrain bundles" RELATED OMO:0003004 [ZFA:0005111] synonym: "medial forebrain fasciculus" EXACT [] synonym: "median forebrain bundle" RELATED [NeuroNames:433] synonym: "MFB" BROAD OMO:0003000 [BIRNLEX:908, NIFSTD:NeuroNames_abbrevSource] @@ -35310,7 +35311,7 @@ synonym: "lactiferous gland" EXACT [FMA:62088] synonym: "lobe of breast" NARROW [] synonym: "lobe of mammary gland" RELATED [FMA:62088] synonym: "mamma" RELATED [BTO:0000817] -synonym: "mammae" RELATED PLURAL [] +synonym: "mammae" RELATED OMO:0003004 [] synonym: "milk patch" NARROW [NCBITaxon:9255] xref: BTO:0000817 xref: CALOHA:TS-0595 @@ -35522,8 +35523,8 @@ synonym: "nuclei paraventriculares thalami" EXACT LATIN [FMA:62152, FMA:TA] synonym: "nucleus paramedianus (Hassler)" RELATED LATIN [NeuroNames:308] synonym: "nucleus paraventricularis thalami" RELATED LATIN [NeuroNames:308] synonym: "paraventricular gray" EXACT [] -synonym: "paraventricular nuclei" RELATED PLURAL [] -synonym: "paraventricular nuclei of thalamus" EXACT PLURAL [] +synonym: "paraventricular nuclei" RELATED OMO:0003004 [] +synonym: "paraventricular nuclei of thalamus" EXACT OMO:0003004 [] synonym: "paraventricular nucleus of the thalamus" RELATED [NeuroNames:308] synonym: "paraventricular thalamic nucleus" EXACT [] synonym: "PV" BROAD OMO:0003000 [BIRNLEX:764, NIFSTD:NeuroNames_abbrevSource] @@ -36212,7 +36213,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "areas of Economo" RELATED [NeuroNames:1347] synonym: "economo's areas" RELATED [NeuroNames:1347] -synonym: "lateral hypothalamic nuclei" RELATED PLURAL [ZFA:0000227] +synonym: "lateral hypothalamic nuclei" RELATED OMO:0003004 [ZFA:0000227] synonym: "LHy" BROAD OMO:0003000 [BIRNLEX:1199, NIFSTD:NeuroNames_abbrevSource] synonym: "nucleus hypothalamicus lateralis" EXACT LATIN [FMA:62337, FMA:TA] xref: BAMS:LHy @@ -36564,7 +36565,7 @@ synonym: "colliculus inferior" RELATED LATIN [Wikipedia:Inferior_colliculus] synonym: "corpus bigeminalis caudalis" RELATED LATIN [NeuroNames:476] synonym: "corpus bigeminum posterioris" RELATED LATIN [NeuroNames:476] synonym: "corpus quadrigeminum inferius" RELATED LATIN [NeuroNames:476] -synonym: "inferior colliculi" EXACT PLURAL [EV:0100246] +synonym: "inferior colliculi" EXACT OMO:0003004 [EV:0100246] synonym: "posterior colliculus" EXACT [] synonym: "posterior corpus quadrigeminum" EXACT [] xref: BAMS:IC @@ -36888,7 +36889,7 @@ synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic] synonym: "bronchus cartilage" EXACT [] synonym: "cartilage of bronchi" EXACT [OBOL:automatic] synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic] -synonym: "cartilagines bronchiales" EXACT PLURAL [] +synonym: "cartilagines bronchiales" EXACT OMO:0003004 [] xref: EMAPA:35192 xref: FMA:62649 xref: MA:0001835 @@ -37606,16 +37607,16 @@ subset: organ_slim subset: pheno_slim synonym: "crypt of Lieberkuhn" EXACT [] synonym: "crypt of Lieberkühn" EXACT [] -synonym: "crypts of Lieberkühn" EXACT PLURAL [] +synonym: "crypts of Lieberkühn" EXACT OMO:0003004 [] synonym: "follicles of Lieberkühn" EXACT [] synonym: "intestinal crypt" EXACT [] -synonym: "intestinal crypts" EXACT PLURAL [] +synonym: "intestinal crypts" EXACT OMO:0003004 [] synonym: "intestinal gland" BROAD [Wikipedia:Crypts_of_Lieberkuhn] synonym: "intestinal gland of Lieberkuhn" RELATED [FMA:63621] synonym: "Lieberkuhn crypt" EXACT [] synonym: "Lieberkuhn gland" EXACT [] synonym: "Lieberkuhn's gland" EXACT [] -synonym: "Lieberkuhn's glands" EXACT PLURAL [] +synonym: "Lieberkuhn's glands" EXACT OMO:0003004 [] synonym: "Lieberkühn crypt" EXACT [] xref: EMAPA:35266 xref: FMA:63621 @@ -39077,7 +39078,7 @@ def: "Subdivision of breast which consists of skin, connective tissue and smooth subset: pheno_slim subset: uberon_slim synonym: "areola mammae" RELATED LATIN [Wikipedia:Areola] -synonym: "areolae" RELATED PLURAL [] +synonym: "areolae" RELATED OMO:0003004 [] xref: FMA:67796 xref: MA:0000788 xref: NCIT:C12368 @@ -39097,14 +39098,14 @@ def: "A tiny smooth muscle that connects the hair follicle with the dermis." [DO subset: pheno_slim subset: uberon_slim synonym: "arectores pilorum" RELATED [BTO:0005132] -synonym: "arrector pili" EXACT PLURAL [FMA:67821, MA:0000778] -synonym: "arrector pili muscle" EXACT PLURAL [EMAPA:26779, MP:0010679] -synonym: "arrector pili smooth muscle" EXACT PLURAL [MA:0000778] -synonym: "arrector pilli" EXACT PLURAL [MP:0010679] -synonym: "arrector pilli muscle" EXACT PLURAL [MP:0010679] +synonym: "arrector pili" EXACT OMO:0003004 [FMA:67821, MA:0000778] +synonym: "arrector pili muscle" EXACT OMO:0003004 [EMAPA:26779, MP:0010679] +synonym: "arrector pili smooth muscle" EXACT OMO:0003004 [MA:0000778] +synonym: "arrector pilli" EXACT OMO:0003004 [MP:0010679] +synonym: "arrector pilli muscle" EXACT OMO:0003004 [MP:0010679] synonym: "arrector pilorum" EXACT [ISBN:0123813611] synonym: "arrector pilorum muscle of hair" EXACT [ISBN:0123813611] -synonym: "erector pili" RELATED PLURAL [BTO:0005132] +synonym: "erector pili" RELATED OMO:0003004 [BTO:0005132] synonym: "erectores pilorum" RELATED [BTO:0005132] synonym: "pilomotor muscle" RELATED [BTO:0005132] xref: BTO:0005132 @@ -39693,7 +39694,7 @@ synonym: "developing embryonic structure" EXACT [FBbt:00004208] synonym: "developing structure" RELATED [] synonym: "embryonale Struktur" RELATED [BTO:0000174] synonym: "embryonic anatomical structure" EXACT [RETIRED_EHDAA2:0003169] -synonym: "embryonic structures" RELATED PLURAL [ZFA:0001105] +synonym: "embryonic structures" RELATED OMO:0003004 [ZFA:0001105] xref: AAO:0000138 xref: BILA:0000034 xref: BTO:0000174 @@ -39983,7 +39984,7 @@ synonym: "atrioventricular cushion" EXACT [Wikipedia:Endocardial_cushion] synonym: "AV cushion" EXACT [] synonym: "cardiac cushion" EXACT [PMID:15797462] synonym: "endocardial cushion tissue" EXACT [EHDAA2:0000434] -synonym: "endocardial cushions" RELATED PLURAL [] +synonym: "endocardial cushions" RELATED OMO:0003004 [] xref: EHDAA2:0000434 xref: EHDAA2:0004028 xref: EHDAA:2586 @@ -40547,11 +40548,11 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "atria" EXACT PLURAL [] +synonym: "atria" EXACT OMO:0003004 [] synonym: "atrial tissue" RELATED [BTO:0000903] synonym: "atrium" EXACT [ZFA:0000471] synonym: "atrium of heart" EXACT [] -synonym: "cardiac atria" EXACT PLURAL [] +synonym: "cardiac atria" EXACT OMO:0003004 [] synonym: "heart atrium" EXACT [] xref: AAO:0010246 xref: BTO:0000903 @@ -40713,7 +40714,7 @@ name: sinoatrial valve def: "A valve at the opening of the sinus venosus into the primordial atrium[TFD,modified]." [http://medical-dictionary.thefreedictionary.com/sinoatrial+valve] subset: pheno_slim subset: vertebrate_core -synonym: "sinoatrial valves" RELATED PLURAL [ZFA:0000680] +synonym: "sinoatrial valves" RELATED OMO:0003004 [ZFA:0000680] synonym: "sinuatrial valve" EXACT [MP:0011646] xref: FMA:71120 xref: TAO:0000680 @@ -41032,11 +41033,11 @@ name: cardiac septum def: "The thin membranous structure between the two heart atria or the thick muscular structure between the two heart ventricles." [MESH:A07.541.459] subset: pheno_slim subset: uberon_slim -synonym: "cardiac septa" EXACT PLURAL [] -synonym: "heart septa" EXACT PLURAL [] +synonym: "cardiac septa" EXACT OMO:0003004 [] +synonym: "heart septa" EXACT OMO:0003004 [] synonym: "heart septum" EXACT [] synonym: "septum of heart" EXACT [] -synonym: "spiral septa" RELATED PLURAL [XAO:0004141] +synonym: "spiral septa" RELATED OMO:0003004 [XAO:0004141] xref: EMAPA:35400 xref: FMA:7180 xref: GAID:562 @@ -41103,7 +41104,7 @@ def: "A paired appendage that is evolved from a paired fin. The extent of this s subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "extremities" RELATED PLURAL [] +synonym: "extremities" RELATED OMO:0003004 [] synonym: "extremity" RELATED [] synonym: "flipper" NARROW SENSU [] synonym: "free limb" EXACT [FMA:24875] @@ -42327,7 +42328,7 @@ name: habenulo-interpeduncular tract def: "White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone)." [BIRNLEX:1504] subset: vertebrate_core synonym: "fasciculus habenulo-interpeduncularis" RELATED LATIN [NeuroNames:2318] -synonym: "fasciculus retroflexi" RELATED PLURAL [ZFA:0000353] +synonym: "fasciculus retroflexi" RELATED OMO:0003004 [ZFA:0000353] synonym: "fasciculus retroflexus" EXACT [ISBN:0471888893] synonym: "fasciculus retroflexus (Meynert)" EXACT [BIRNLEX:1504] synonym: "fasciculus retroflexus (of Meynert)" RELATED LATIN [NeuroNames:2318] @@ -42593,7 +42594,7 @@ name: interpeduncular nucleus subset: vertebrate_core synonym: "interpedunclear nucleus" RELATED [MTB:379] synonym: "interpeduncular ganglion" EXACT [] -synonym: "interpeduncular nuclei" EXACT PLURAL [] +synonym: "interpeduncular nuclei" EXACT OMO:0003004 [] synonym: "interpeduncular nucleus (Gudden)" RELATED [NeuroNames:522] synonym: "interpeduncular nucleus of midbrain" EXACT [] synonym: "interpeduncular nucleus tegmentum" RELATED [TAO:0000903] @@ -42691,7 +42692,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "blue nucleus" EXACT [BIRNLEX:905] synonym: "caerulean nucleus" EXACT [] -synonym: "loci coeruleus" RELATED PLURAL [ZFA:0000539] +synonym: "loci coeruleus" RELATED OMO:0003004 [ZFA:0000539] synonym: "locus caeruleus" EXACT [BIRNLEX:905] synonym: "locus cinereus" RELATED [BTO:0001408] synonym: "locus coeruleu" EXACT [] @@ -42939,7 +42940,7 @@ name: lateral reticular nucleus def: "A nucleus of the lateral medullary nuclear complex." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim subset: vertebrate_core -synonym: "lateral reticular nuclei" RELATED PLURAL [ZFA:0000535] +synonym: "lateral reticular nuclei" RELATED OMO:0003004 [ZFA:0000535] synonym: "lateral reticular nucleus (medulla)" EXACT [] synonym: "nucleus reticularis lateralis medullae oblongatae" RELATED LATIN [Wikipedia:Lateral_reticular_nucleus] xref: BAMS:LRN @@ -43629,7 +43630,7 @@ def: "The lateral mass of fibers on either side of the spinal cord, between the subset: uberon_slim subset: vertebrate_core synonym: "funiculus lateralis medullae spinalis" RELATED LATIN [Wikipedia:Lateral_funiculus] -synonym: "lateral funiculi" RELATED PLURAL [ZFA:0000533] +synonym: "lateral funiculi" RELATED OMO:0003004 [ZFA:0000533] synonym: "lateral funiculus" EXACT [ZFA:0000533] synonym: "lateral funiculus of spinal cord" EXACT [] synonym: "lateral white column of spinal cord" EXACT [FMA:74000] @@ -43652,7 +43653,7 @@ synonym: "anterior funiculus" EXACT [] synonym: "anterior funiculus of spinal cord" EXACT [] synonym: "anterior white column of spinal cord" EXACT [FMA:74003] synonym: "funiculus anterior medullae spinalis" EXACT LATIN [FMA:74003, FMA:TA] -synonym: "ventral funiculi" RELATED PLURAL [ZFA:0000605] +synonym: "ventral funiculi" RELATED OMO:0003004 [ZFA:0000605] synonym: "ventral funiculus" EXACT [ZFA:0000605] synonym: "ventral funiculus of spinal cord" EXACT [] synonym: "ventral white column of spinal cord" EXACT [FMA:74003] @@ -43736,8 +43737,8 @@ def: "The lobar bronchus is the major airway within the respiratory tree that st subset: organ_slim subset: uberon_slim synonym: "bronchi lobaris" EXACT LATIN [Wikipedia:Secondary_bronchus] -synonym: "lobar bronchi" RELATED PLURAL [Wikipedia:Secondary_bronchus] -synonym: "secondary bronchi" RELATED PLURAL [Wikipedia:Secondary_bronchus] +synonym: "lobar bronchi" RELATED OMO:0003004 [Wikipedia:Secondary_bronchus] +synonym: "secondary bronchi" RELATED OMO:0003004 [Wikipedia:Secondary_bronchus] synonym: "secondary bronchus" EXACT [FMA:7406, Wikipedia:Secondary_bronchus] xref: EHDAA:4955 xref: EHDAA:4963 @@ -43803,7 +43804,7 @@ subset: efo_slim subset: organ_slim subset: pheno_slim subset: uberon_slim -synonym: "bronchi" EXACT PLURAL [] +synonym: "bronchi" EXACT OMO:0003004 [] synonym: "bronchial tissue" RELATED [BTO:0001340] synonym: "bronchial trunk" EXACT [FMA:7409] xref: BTO:0001340 @@ -43839,7 +43840,7 @@ def: "The conducting airway of the lungs found terminal to the bronchi; these st comment: In some texts/references/ontologies, bronchiole has been used as an exact synonym of 'lobular bronchiole'. However, a 'lobular bronchiole' is a segment of a bronchiole. {xref="https://github.com/obophenotype/uberon/issues/2795"} subset: pheno_slim subset: uberon_slim -synonym: "bronchioli" RELATED PLURAL [] +synonym: "bronchioli" RELATED OMO:0003004 [] synonym: "bronchiolus" RELATED [BTO:0002375] xref: BTO:0002375 xref: CALOHA:TS-2003 @@ -43997,7 +43998,7 @@ synonym: "choroid fissure" RELATED INCONSISTENT [FMA:74512, TAO:0001075] synonym: "choroid invagination" RELATED [EHDAA2:0000250] synonym: "choroidal fissure" RELATED [FMA:74512] synonym: "choroidal fissure of lateral ventricle" EXACT [FMA:83715] -synonym: "choroidal fissures" RELATED PLURAL [ZFA:0001075] +synonym: "choroidal fissures" RELATED OMO:0003004 [ZFA:0001075] synonym: "lateral ventricle choroid fissure" EXACT [EHDAA2:0000250] synonym: "ventricular system choroid fissure" EXACT [VHOG:0001756] xref: BAMS:chf @@ -44065,9 +44066,9 @@ name: trabecula of lymph node def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae] subset: pheno_slim synonym: "lymph node trabecula" EXACT [] -synonym: "lymph node trabeculae" EXACT PLURAL [] +synonym: "lymph node trabeculae" EXACT OMO:0003004 [] synonym: "lymph node trabeculum" EXACT [] -synonym: "trabeculae of lymph node" EXACT PLURAL [] +synonym: "trabeculae of lymph node" EXACT OMO:0003004 [] xref: FMA:74605 xref: MA:0000746 xref: NCIT:C33035 @@ -44666,7 +44667,7 @@ synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic] synonym: "macula utricle" EXACT [ZFA:0000030] synonym: "macula utriculi" EXACT LATIN [FMA:74960, FMA:TA] synonym: "macula utriculi" RELATED LATIN [Wikipedia:Macula_of_utricle] -synonym: "maculae utricle" RELATED PLURAL [ZFA:0000030] +synonym: "maculae utricle" RELATED OMO:0003004 [ZFA:0000030] synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic] synonym: "utricle macula" EXACT [OBOL:automatic] synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic] @@ -44732,8 +44733,8 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "articulatio synoviale" EXACT [] -synonym: "diarthrodial joints" RELATED PLURAL [ZFA:0005153] -synonym: "diarthroses" EXACT PLURAL [ZFA:0005153] +synonym: "diarthrodial joints" RELATED OMO:0003004 [ZFA:0005153] +synonym: "diarthroses" EXACT OMO:0003004 [ZFA:0005153] synonym: "diarthrosis" EXACT [] synonym: "diarthrosis joint" EXACT [] xref: AEO:0000183 @@ -44814,8 +44815,8 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "fontanel" EXACT [] -synonym: "fontanelles" EXACT PLURAL [TAO:0001738] -synonym: "fontanels" EXACT PLURAL [TAO:0001738] +synonym: "fontanelles" EXACT OMO:0003004 [TAO:0001738] +synonym: "fontanels" EXACT OMO:0003004 [TAO:0001738] synonym: "fonticuli cranii" RELATED LATIN [Wikipedia:Fontanelle] xref: FMA:75438 xref: MA:0001465 @@ -44967,7 +44968,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "auditory papilla" RELATED SENSU [ISBN:9780387714691] -synonym: "auditory papillae" RELATED PLURAL [ISBN:9780387714691] +synonym: "auditory papillae" RELATED OMO:0003004 [ISBN:9780387714691] synonym: "basilar papilla" RELATED SENSU [XAO:0003145] synonym: "cochlear spiral organ" EXACT [] synonym: "Corti's organ" RELATED [BTO:0001691] @@ -45015,7 +45016,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "dorsal rib" RELATED [] synonym: "pleural rib" RELATED [] -synonym: "ribs" RELATED PLURAL [TAO:0000538] +synonym: "ribs" RELATED OMO:0003004 [TAO:0000538] xref: AAO:0000545 xref: CALOHA:TS-2209 xref: EFO:0003066 @@ -45232,7 +45233,7 @@ id: UBERON:0002237 name: true rib def: "A rib that is ventrally connected to the sternum." [ISBN:0073040584, Wikipedia:True_ribs] synonym: "costa vera" EXACT [] -synonym: "costae verae" RELATED PLURAL [Wikipedia:True_ribs] +synonym: "costae verae" RELATED OMO:0003004 [Wikipedia:True_ribs] xref: EMAPA:37774 {source="MA:th"} xref: FMA:7592 xref: MA:0001419 @@ -45250,7 +45251,7 @@ def: "A rib that is not directly ventrally connected to the sternum." [ISBN:0073 subset: uberon_slim synonym: "asternal ribs" RELATED [Wikipedia:False_ribs] synonym: "costa spuria" EXACT [] -synonym: "costae spuriae" RELATED PLURAL [Wikipedia:False_ribs] +synonym: "costae spuriae" RELATED OMO:0003004 [Wikipedia:False_ribs] xref: EMAPA:37493 {source="MA:th"} xref: FMA:7594 xref: MA:0001398 @@ -45419,7 +45420,7 @@ subset: vertebrate_core synonym: "incisive bone" RELATED [Wikipedia:Incisive_bone] synonym: "os incisivum" RELATED [Wikipedia:Premaxilla] synonym: "premaxilla bone" RELATED [Wikipedia:Premaxilla] -synonym: "premaxillae" EXACT PLURAL [] +synonym: "premaxillae" EXACT OMO:0003004 [] synonym: "premaxillary" EXACT [PHENOSCAPE:ad] synonym: "premaxillary bone" RELATED [Wikipedia:Premaxilla] xref: AAO:0000461 @@ -45457,7 +45458,7 @@ def: "A paired regions of the cerebellum that lie outside and lateral to the cen subset: pheno_slim subset: uberon_slim synonym: "cerebellar hemisphere" EXACT [] -synonym: "cerebellar hemispheres" RELATED PLURAL [] +synonym: "cerebellar hemispheres" RELATED OMO:0003004 [] synonym: "cerebellum hemisphere" EXACT [] synonym: "hemisphere of cerebellum" EXACT [FMA:76925] synonym: "hemisphere of cerebellum [H II - H X]" EXACT [] @@ -45491,7 +45492,7 @@ def: "Two column-shaped nuclear masses formed by large cells. Clarke's nuclei ar comment: Created by Sarah M. Maynard subset: uberon_slim synonym: "Clarke's column" EXACT [] -synonym: "Clarke's nuclei" RELATED PLURAL [NLXANAT:20090102] +synonym: "Clarke's nuclei" RELATED OMO:0003004 [NLXANAT:20090102] synonym: "Clarke's nucleus" EXACT [] synonym: "dorsal nucleus of Clarke" EXACT [FMA:73912] synonym: "dorsal nucleus of the spinal cord" RELATED [BAMS:DSN] @@ -45716,7 +45717,7 @@ synonym: "posterior gray horn of spinal cord" EXACT [FMA:256530] synonym: "posterior grey column of spinal cord" EXACT [] synonym: "posterior horn of spinal cord" EXACT [Wikipedia:Posterior_horn_of_spinal_cord] synonym: "spinal cord dorsal horn" EXACT [] -synonym: "spinal cord dorsal horns" RELATED PLURAL [] +synonym: "spinal cord dorsal horns" RELATED OMO:0003004 [] synonym: "spinal cord posterior horn" EXACT [BIRNLEX:2667] xref: BAMS:DH xref: BIRNLEX:2667 @@ -45766,7 +45767,7 @@ synonym: "ventral grey column of spinal cord" EXACT [] synonym: "ventral grey horn" EXACT [BIRNLEX:2668] synonym: "ventral horn of the spinal cord" RELATED [BAMS:VH] synonym: "ventral horn spinal cord" EXACT [ZFA:0000702] -synonym: "ventral horns spinal cord" RELATED PLURAL [VHOG:0001288] +synonym: "ventral horns spinal cord" RELATED OMO:0003004 [VHOG:0001288] synonym: "ventral region of spinal cord" EXACT [] synonym: "ventral spinal cord" EXACT [] xref: BAMS:VH @@ -46186,7 +46187,7 @@ synonym: "arteria hyaloidea" EXACT LATIN [Wikipedia:Hyaloid_artery] synonym: "central artery of retina" RELATED [EMAPA:19242] synonym: "Cloquet's canal" RELATED [Wikipedia:Hyaloid_artery] synonym: "Cloquets canal" RELATED [Wikipedia:Hyaloid_artery] -synonym: "hyaloid arteries" RELATED PLURAL [ZFA:0005045] +synonym: "hyaloid arteries" RELATED OMO:0003004 [ZFA:0005045] xref: EHDAA2:0004072 xref: EMAPA:19242 xref: FMA:77670 @@ -46371,11 +46372,11 @@ subset: uberon_slim subset: vertebrate_core synonym: "immature otolith" RELATED [] synonym: "immature otoliths" RELATED [] -synonym: "otoconia" RELATED PLURAL [] +synonym: "otoconia" RELATED OMO:0003004 [] synonym: "otoconial crystal" RELATED [MP:0002894] synonym: "otoconium" EXACT [] -synonym: "otoliths" EXACT PLURAL [] -synonym: "statoconia" RELATED PLURAL [] +synonym: "otoliths" EXACT OMO:0003004 [] +synonym: "statoconia" RELATED OMO:0003004 [] synonym: "statoconium" EXACT [] synonym: "statolith" RELATED [] xref: ANISEED:777311 @@ -46505,7 +46506,7 @@ subset: vertebrate_core synonym: "forebrain ventricle" RELATED [] synonym: "lateral ventricle" EXACT HUMAN_PREFERRED [MA:0000192] synonym: "lateral ventricle of brain" RELATED [BTO:0000879] -synonym: "lateral ventricles" EXACT PLURAL [] +synonym: "lateral ventricles" EXACT OMO:0003004 [] synonym: "tectal ventricle" RELATED [] synonym: "telencephalic ventricle" EXACT [VHOG:0000643, ZFA:0000696] synonym: "telencephalic ventricles" RELATED [BAMS:Tel-V] @@ -47000,13 +47001,13 @@ def: "Spherical outcropping of the respiratory bronchioles and primary site of g subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "alveoli" RELATED PLURAL [BTO:0000060] +synonym: "alveoli" RELATED OMO:0003004 [BTO:0000060] synonym: "alveolus" BROAD [] synonym: "alveolus pulmonis" EXACT [Wikipedia:Pulmonary_alveolus] synonym: "alveolus pulmonis" RELATED LATIN [Wikipedia:Pulmonary_alveolus] synonym: "lung alveolus" EXACT [] synonym: "pulmonary alveolus" EXACT [FMA:7318] -synonym: "respiratory alveoli" RELATED PLURAL [] +synonym: "respiratory alveoli" RELATED OMO:0003004 [] synonym: "respiratory alveolus" EXACT [] xref: BTO:0000060 xref: CALOHA:TS-0031 @@ -47189,7 +47190,7 @@ relationship: part_of UBERON:0002285 ! telencephalic ventricle id: UBERON:0002308 name: nucleus of brain def: "A neural nucleus that is part of the brain." [http://orcid.org/0000-0002-6601-2165] -synonym: "brain nuclei" RELATED PLURAL [ZFA:0005575] +synonym: "brain nuclei" RELATED OMO:0003004 [ZFA:0005575] synonym: "brain nucleus" EXACT [] xref: EMAPA:35185 xref: FMA:83840 @@ -47418,7 +47419,7 @@ name: white matter of cerebellum def: "Regional part of cerebellum consisting of the myelinated axons lying deep to the granule cell layer, excluding the deep cerebellar nuclei and the cerebellar peduncles." [BIRNLEX:1562] subset: pheno_slim subset: vertebrate_core -synonym: "cerebellar tracts/commissures" RELATED PLURAL [ZFA:0001708] +synonym: "cerebellar tracts/commissures" RELATED OMO:0003004 [ZFA:0001708] synonym: "cerebellar white matter" EXACT [] synonym: "cerebellum white matter" EXACT [] synonym: "medullary substance of cerebellum" RELATED [NeuroNames:691] @@ -47529,7 +47530,7 @@ name: periventricular nucleus def: "A thin sheet of small neurons located in the wall of the third ventricle, a composite structure of the hypothalamus." [Wikipedia:Periventricular_nucleus] subset: uberon_slim subset: vertebrate_core -synonym: "periventricular nuclei" RELATED PLURAL [ZFA:0000260] +synonym: "periventricular nuclei" RELATED OMO:0003004 [ZFA:0000260] synonym: "ventral zone of periventricular hypothalamus" EXACT [ZFA:0000260] xref: FMA:84354 xref: TAO:0000260 @@ -47705,7 +47706,7 @@ synonym: "epimere" RELATED [ISBN:0073040584] synonym: "epimere mesoderm" RELATED [] synonym: "epithelial somite" RELATED [https://github.com/obophenotype/uberon/wiki/The-neural-crest] synonym: "mesodermal cluster" BROAD [GO:0001756] -synonym: "somites" RELATED PLURAL [] +synonym: "somites" RELATED OMO:0003004 [] synonym: "somitic mesoderm" RELATED [] synonym: "somitus" RELATED LATIN [Wikipedia:Somite] xref: AAO:0010569 @@ -48826,7 +48827,7 @@ subset: uberon_slim synonym: "bulbourethral gland" EXACT [FMA:9599] synonym: "Cowper's gland" EXACT [FMA:9599] synonym: "Cowper's gland of male" RELATED [EMAPA:19286] -synonym: "Cowper's glands" EXACT PLURAL [FMA:9599] +synonym: "Cowper's glands" EXACT OMO:0003004 [FMA:9599] synonym: "glandula bulbourethralis" EXACT LATIN [MP:anna] synonym: "Mery's gland" EXACT [] synonym: "Méry gland" EXACT [MP:anna] @@ -49156,9 +49157,9 @@ name: cricoid cartilage def: "A cartilaginous ring that provides support for the arytenoid cartilages and forms the caudal part of the larynx." [AAO:LAP, FEED:rd, https://github.com/obophenotype/uberon/issues/257] subset: pheno_slim subset: uberon_slim -synonym: "cartilaginis cricoideae" RELATED PLURAL [Wikipedia:Cricoid_cartilage] +synonym: "cartilaginis cricoideae" RELATED OMO:0003004 [Wikipedia:Cricoid_cartilage] synonym: "cartilago cricoidea" EXACT LATIN [Wikipedia:Cricoid_cartilage] -synonym: "cartilago cricoidea" RELATED PLURAL [] +synonym: "cartilago cricoidea" RELATED OMO:0003004 [] synonym: "cartilago cricotrachealis" RELATED [AAO:0000675] synonym: "cricoid" RELATED [Wikipedia:Cricoid_cartilage] synonym: "cricoidea" RELATED [Wikipedia:Cricoid_cartilage] @@ -49545,7 +49546,7 @@ synonym: "hind foot" NARROW [] synonym: "hind limb autopodium" RELATED [VHOG:0000350] synonym: "hind paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] synonym: "hind-paw" NARROW SENSU [EMAPA:17428] -synonym: "hindfeet" NARROW PLURAL [] +synonym: "hindfeet" NARROW OMO:0003004 [] synonym: "hindfoot" NARROW [] synonym: "hindfoot of quadruped" NARROW [] synonym: "hindlimb autopod" EXACT [OBOL:automatic] @@ -49881,7 +49882,7 @@ comment: Fusion of maxilla + premaxilla subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "maxillae" RELATED PLURAL [] +synonym: "maxillae" RELATED OMO:0003004 [] synonym: "maxillary bone" RELATED [Wikipedia:Maxilla] synonym: "upper jaw bone" BROAD [] xref: AAO:0000285 @@ -49929,7 +49930,7 @@ subset: uberon_slim synonym: "fore foot" NARROW INCONSISTENT [] synonym: "fore paw" NARROW SENSU [EMAPA:17428, OBOL:automatic] synonym: "fore-paw" NARROW SENSU [EMAPA:17428] -synonym: "forefeet" NARROW PLURAL [] +synonym: "forefeet" NARROW OMO:0003004 [] synonym: "forefoot" NARROW INCONSISTENT [] synonym: "forefoot of quadruped" NARROW [] synonym: "forelimb autopod" EXACT [OBOL:automatic] @@ -50331,7 +50332,7 @@ subset: pheno_slim subset: uberon_slim subset: vertebrate_core synonym: "vertebra bone" EXACT [] -synonym: "vertebrae" EXACT PLURAL [PHENOSCAPE:ad] +synonym: "vertebrae" EXACT OMO:0003004 [PHENOSCAPE:ad] xref: AAO:0000691 xref: BTO:0006196 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} xref: CALOHA:TS-2352 @@ -50364,7 +50365,7 @@ name: cervical vertebra def: "A vertebra that is located in the cervical region of the vertebral column." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim subset: uberon_slim -synonym: "cervical vertebrae" EXACT PLURAL [] +synonym: "cervical vertebrae" EXACT OMO:0003004 [] synonym: "vertebrae cervicales" RELATED LATIN [Wikipedia:Cervical_vertebrae] xref: EMAPA:17674 xref: FMA:9915 @@ -50558,8 +50559,8 @@ def: "A gland that is part of a skin of body [Automatically generated definition subset: organ_slim synonym: "glandulae cutis" EXACT LATIN [FMA:71878, FMA:TA] synonym: "set of skin glands" RELATED [FMA:71878] -synonym: "skin glands" RELATED PLURAL [] -synonym: "skin glands set" RELATED PLURAL [] +synonym: "skin glands" RELATED OMO:0003004 [] +synonym: "skin glands set" RELATED OMO:0003004 [] xref: EMAPA:35774 xref: FMA:71878 xref: MA:0000146 @@ -50576,7 +50577,7 @@ def: "An individual member of a collection of basal ganglia. Basal ganglia are s subset: efo_slim subset: pheno_slim subset: uberon_slim -synonym: "basal ganglia" RELATED PLURAL [] +synonym: "basal ganglia" RELATED OMO:0003004 [] synonym: "basal ganglion of telencephalon" EXACT [] synonym: "basal nucleus" RELATED [MA:0000184] synonym: "nuclei basales" RELATED LATIN [Wikipedia:Basal_ganglia] @@ -51457,8 +51458,8 @@ def: "Any of the mushroom-shaped papillae, which have a single taste bud at the subset: pheno_slim subset: uberon_slim synonym: "fungiform papilla of tongue" EXACT [FMA:54821] -synonym: "fungiform papillae" EXACT PLURAL [] -synonym: "fungiform papillae set" EXACT PLURAL [] +synonym: "fungiform papillae" EXACT OMO:0003004 [] +synonym: "fungiform papillae set" EXACT OMO:0003004 [] synonym: "papillae fungiformes" RELATED LATIN [Wikipedia:Fungiform_papilla] xref: BIRNLEX:4106 xref: EMAPA:18272 @@ -51635,7 +51636,7 @@ alt_id: UBERON:0006001 def: "The small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries." [MP:0010662] subset: pheno_slim subset: vertebrate_core -synonym: "intersegmental arteries" RELATED PLURAL [ZFA:0001061] +synonym: "intersegmental arteries" RELATED OMO:0003004 [ZFA:0001061] synonym: "intersegmental artery" EXACT [ZFA:0001061] xref: EHDAA2:0000882 xref: EHDAA:4340 @@ -51657,7 +51658,7 @@ name: spinal artery def: "Arteries that supply the spinal cord." [https://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_artery] subset: uberon_slim subset: vertebrate_core -synonym: "spinal arteries" EXACT PLURAL [ZFA:0000682] +synonym: "spinal arteries" EXACT OMO:0003004 [ZFA:0000682] xref: EHDAA2:0001890 xref: EHDAA:4355 xref: EMAPA:18241 @@ -51697,7 +51698,7 @@ name: vesical vein def: "A tributary of the iliac vein that drains the urinary bladder." [UBERON:cjm, Wikipedia:Vesical_veins] subset: uberon_slim synonym: "venae vesicales" EXACT LATIN [FMA:70911, FMA:TA] -synonym: "vesical veins" EXACT PLURAL [] +synonym: "vesical veins" EXACT OMO:0003004 [] synonym: "vesical veins set" EXACT [] xref: EMAPA:37205 {source="MA:th"} xref: MA:0002263 @@ -52240,7 +52241,7 @@ synonym: "lesser wing of sphenoid" EXACT [FMA:52869] synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] synonym: "lesser wing of sphenoidal bone" EXACT [FMA:52869] synonym: "orbitosphenoid bone" EXACT [http://orcid.org/0000-0002-6601-2165] -synonym: "orbitosphenoids" RELATED PLURAL [ZFA:0000253] +synonym: "orbitosphenoids" RELATED OMO:0003004 [ZFA:0000253] xref: AAO:0000345 xref: EMAPA:18719 xref: FMA:52869 @@ -53018,7 +53019,7 @@ synonym: "cardiac trabecula" RELATED [GO:0060347] synonym: "columnae carneae" RELATED LATIN [Wikipedia:Trabeculae_carneae] synonym: "heart trabecula" RELATED [GO:0060347] synonym: "trabecula of heart" RELATED [] -synonym: "trabeculae carneae" RELATED PLURAL [] +synonym: "trabeculae carneae" RELATED OMO:0003004 [] synonym: "trabeculae carneae cordis" RELATED LATIN [Wikipedia:Trabeculae_carneae] synonym: "ventricle trabecula carnea" EXACT [MA:0002831] synonym: "ventricular trabecula" RELATED [MA:0002831] @@ -53040,7 +53041,7 @@ name: corpus luteum def: "A transient endocrine gland that develops from the postovulatory or atretic follicles and secretes progesterone; it is thought to be related to egg retention[PMID]." [PMID:20959416, Wikipedia:Corpus_luteum] subset: pheno_slim subset: uberon_slim -synonym: "corpora lutea" EXACT PLURAL [] +synonym: "corpora lutea" EXACT OMO:0003004 [] synonym: "corpus luteum of ovary" EXACT [] synonym: "luteal gland" RELATED [BTO:0000292] synonym: "ovarian corpus luteum" EXACT [] @@ -53073,7 +53074,7 @@ def: "Replacement bone that forms within cartilage." [GO:0001958, GO_REF:0000034 subset: uberon_slim subset: vertebrate_core synonym: "cartilaginous bone" RELATED [BTO:0002157] -synonym: "endochondral bones" RELATED PLURAL [ZFA:0001591] +synonym: "endochondral bones" RELATED OMO:0003004 [ZFA:0001591] synonym: "ossified chondrogenic bone" EXACT [VSAO:0000145] xref: AAO:0010776 xref: AEO:0000083 @@ -53099,7 +53100,7 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-en id: UBERON:0002514 name: intramembranous bone def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, https://github.com/obophenotype/uberon/issues/267, Wikipedia:Intramembranous_ossification] -synonym: "intramembranous bones" RELATED PLURAL [ZFA:0001635] +synonym: "intramembranous bones" RELATED OMO:0003004 [ZFA:0001635] synonym: "membrane bone" RELATED [AEO:0000085] xref: EMAPA:36615 xref: TAO:0001644 @@ -53482,7 +53483,7 @@ name: paired fin bud def: "An outgrowth on the lateral trunk of the embryo that develops into a paired fin. The fin bud is divided into ectoderm and mesenchyme[cjm, modified from MP]." [https://orcid.org/0000-0002-6601-2165, ISBN:9780878932504, MP:0005650] subset: efo_slim synonym: "fin bud" EXACT [ZFA:0001383] -synonym: "fin buds" EXACT PLURAL [VSAO:0000179] +synonym: "fin buds" EXACT OMO:0003004 [VSAO:0000179] xref: EFO:0003468 xref: MAT:0000062 xref: MIAA:0000062 @@ -53652,7 +53653,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "arcus pharyngei" RELATED LATIN [Wikipedia:Pharyngeal_arch] synonym: "branchial arch" NARROW [BTO:0001785, MP:0002884] -synonym: "pharyngeal arches" EXACT PLURAL [] +synonym: "pharyngeal arches" EXACT OMO:0003004 [] synonym: "visceral arch" RELATED [] xref: AAO:0010359 xref: BTO:0001785 @@ -53743,7 +53744,7 @@ subset: efo_slim subset: grouping_class synonym: "scale (sensu Metazoa)" EXACT [] synonym: "scale tissue" RELATED [BTO:0005055] -synonym: "scales" RELATED PLURAL [] +synonym: "scales" RELATED OMO:0003004 [] xref: BTO:0005055 xref: EFO:0000960 xref: HAO:0000907 @@ -53831,7 +53832,7 @@ id: UBERON:0002546 name: cranial placode def: "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic." [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/obophenotype/uberon/issues/135, https://github.com/seger/aao/issues/4, https://orcid.org/0000-0002-6601-2165, https://sourceforge.net/p/obo/xenopus-anatomy-xao-term-requests/11/] subset: efo_slim -synonym: "cranial placodes" RELATED PLURAL [XAO:0000305] +synonym: "cranial placodes" RELATED OMO:0003004 [XAO:0000305] synonym: "ectodermal cranial placode" EXACT [UBERON:cjm] synonym: "ectodermal placode" BROAD INCONSISTENT [FMA:293966, PMID:22512454] synonym: "placode" BROAD [Wikipedia:Placode] @@ -54350,7 +54351,7 @@ relationship: part_of UBERON:0002132 ! dentate nucleus id: UBERON:0002569 name: transverse temporal sulcus synonym: "sulci temporales transversi" RELATED LATIN [NeuroNames:128] -synonym: "transverse temporal sulci" RELATED PLURAL [] +synonym: "transverse temporal sulci" RELATED OMO:0003004 [] xref: BAMS:tts xref: BIRNLEX:1045 xref: DHBA:146034852 @@ -54911,7 +54912,7 @@ id: UBERON:0002595 name: orbital sulcus def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus." [Wikipedia:Orbital_sulcus] synonym: "cruciate sulcus of campbell" EXACT [BIRNLEX:1112] -synonym: "orbital sulci" EXACT PLURAL [FMA:83770] +synonym: "orbital sulci" EXACT OMO:0003004 [FMA:83770] synonym: "ORBS" BROAD OMO:0003000 [BIRNLEX:1112, NIFSTD:NeuroNames_abbrevSource] synonym: "sulci orbitales" RELATED LATIN [NeuroNames:79] synonym: "sulci orbitalis" EXACT LATIN [] @@ -55881,7 +55882,7 @@ synonym: "nucleus motorius nervi trigemini" EXACT LATIN [FMA:54562, FMA:TA] synonym: "nucleus motorius nervi trigemini" RELATED LATIN [Wikipedia:Trigeminal_motor_nucleus] synonym: "nucleus motorius trigeminalis" RELATED LATIN [NeuroNames:559] synonym: "nV" EXACT [ZFA:0001365] -synonym: "trigeminal motor nuclei" EXACT PLURAL [TAO:0001365] +synonym: "trigeminal motor nuclei" EXACT OMO:0003004 [TAO:0001365] synonym: "trigeminal motor nucleus" EXACT [ZFA:0001365] synonym: "trigeminal V motor nucleus" EXACT [MA:0001029] xref: BAMS:Mo5 @@ -57007,7 +57008,7 @@ name: abducens nucleus def: "Nucleus located beneath the floor of the 4th ventricle in the pontine tegmentum, containing motor neurons innervating the lateral rectus muscle of the eye (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533)." [BIRNLEX:1366] subset: uberon_slim subset: vertebrate_core -synonym: "abducens motor nuclei" EXACT PLURAL [TAO:0000713] +synonym: "abducens motor nuclei" EXACT OMO:0003004 [TAO:0000713] synonym: "abducens motor nucleus" EXACT [ZFA:0000713] synonym: "abducens nerve nucleus" EXACT [FMA:54504] synonym: "abducens nucleus proper" RELATED [NeuroNames:585] @@ -58762,7 +58763,7 @@ def: "One of two layers of both white and gray matter of the septum pellucidum. subset: pheno_slim synonym: "lamina of the septum pellucidum" RELATED [NeuroNames:258] synonym: "lamina septi pellucidi" RELATED LATIN [NeuroNames:258] -synonym: "laminae septi pellucidi" EXACT PLURAL [] +synonym: "laminae septi pellucidi" EXACT OMO:0003004 [] synonym: "septum pellucidum lamina" EXACT [FMA:62472] xref: BAMS:lsp xref: BIRNLEX:1554 @@ -59370,7 +59371,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "tractus vestibulospinalis" RELATED LATIN [Wikipedia:Vestibulospinal_tract] synonym: "vestibulo-spinal tract" EXACT [ZFA:0000709] -synonym: "vestibulo-spinal tracts" RELATED PLURAL [ZFA:0000709] +synonym: "vestibulo-spinal tracts" RELATED OMO:0003004 [ZFA:0000709] synonym: "vestibulospinal pathway" RELATED [NeuroNames:812] synonym: "vestibulospinal tracts" RELATED [NeuroNames:812] xref: BAMS:vs @@ -59986,7 +59987,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Hu id: UBERON:0002796 name: motor root of trigeminal nerve synonym: "dorsal motor root of v" RELATED [TAO:0000650] -synonym: "dorsal motor roots of V" RELATED PLURAL [ZFA:0000650] +synonym: "dorsal motor roots of V" RELATED OMO:0003004 [ZFA:0000650] synonym: "minor root of trigeminal nerve" RELATED [NeuroNames:608] synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612] synonym: "motor root of N. V" RELATED [NeuroNames:608] @@ -60526,7 +60527,7 @@ synonym: "statoacoustic (VIII) ganglion" EXACT [ZFA:0000588] synonym: "statoacoustic ganglia" EXACT [ZFA:0000588] synonym: "statoacoustic ganglion" EXACT [XAO:0004142] synonym: "statoacoustic VIII ganglion" RELATED [VHOG:0000696] -synonym: "vestibulocochlear ganglia" RELATED PLURAL [XAO:0004142] +synonym: "vestibulocochlear ganglia" RELATED OMO:0003004 [XAO:0004142] synonym: "vestibulocochlear VIII ganglion" EXACT [MA:0001084] xref: BIRNLEX:2564 xref: EFO:0003543 @@ -62461,7 +62462,7 @@ relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum id: UBERON:0002919 name: anterior parolfactory sulcus synonym: "APS" BROAD OMO:0003000 [BIRNLEX:4039, NIFSTD:NeuroNames_abbrevSource] -synonym: "paraolfactory sulci" EXACT PLURAL [BIRNLEX:4039] +synonym: "paraolfactory sulci" EXACT OMO:0003004 [BIRNLEX:4039] synonym: "paraolfactory sulcus" EXACT [FMA:83744] synonym: "sulcus parolfactorius anterior" EXACT [BIRNLEX:4039] xref: BAMS:aps @@ -64934,7 +64935,7 @@ subset: efo_slim subset: uberon_slim synonym: "cingulate neocortex" EXACT [DHBA:10277] synonym: "gyrus cingulatus" RELATED LATIN [Wikipedia:Cingulate_cortex] -synonym: "gyrus cinguli" RELATED PLURAL [] +synonym: "gyrus cinguli" RELATED OMO:0003004 [] xref: BIRNLEX:934 xref: BM:Tel-Cx-Cg xref: BTO:0003975 @@ -65157,7 +65158,7 @@ name: septum def: "A wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum] comment: general anatomical term in FMA subset: pheno_slim -synonym: "septa" EXACT PLURAL [] +synonym: "septa" EXACT OMO:0003004 [] xref: AAO:0011127 xref: FMA:86461 xref: Wikipedia:Septum @@ -65473,7 +65474,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "nasal I placode" RELATED [] synonym: "nasal placode" RELATED [] -synonym: "olfactory placodes" EXACT PLURAL [] +synonym: "olfactory placodes" EXACT OMO:0003004 [] synonym: "placoda nasalis" EXACT LATIN [] synonym: "placoda olfactoria" EXACT LATIN [] xref: AAO:0011076 @@ -65574,7 +65575,7 @@ subset: efo_slim subset: vertebrate_core synonym: "brain ventricular zone" EXACT [MA:0000819] synonym: "ventricular zone of brain" EXACT [] -synonym: "ventricular zones" RELATED PLURAL [ZFA:0001083] +synonym: "ventricular zones" RELATED OMO:0003004 [ZFA:0001083] synonym: "VZ" EXACT [] xref: AAO:0011112 xref: BTO:0003654 @@ -65746,7 +65747,7 @@ comment: The pronephric duct collects the filtrate from the pronephric tubules a subset: uberon_slim synonym: "archinephric duct" RELATED [VHOG:0000082] synonym: "ductus pronephricus" RELATED LATIN [Wikipedia:Pronephric_duct] -synonym: "pronephric ducts" RELATED PLURAL [ZFA:0000150] +synonym: "pronephric ducts" RELATED OMO:0003004 [ZFA:0000150] xref: AAO:0011088 xref: BTO:0005991 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} xref: NCIT:C34279 @@ -65773,7 +65774,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "blood islands" EXACT PLURAL [] +synonym: "blood islands" EXACT OMO:0003004 [] synonym: "caudal hematopoietic tissue" RELATED [] synonym: "posterior blood island" RELATED [] synonym: "posterior ICM" RELATED [] @@ -65983,7 +65984,7 @@ id: UBERON:0003067 name: dorsolateral placode def: "Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator] comment: The only remaining dorsolateral placode in land vertebrates is the otic/octaval placode -synonym: "dorsolateral placodes" EXACT PLURAL [ZFA:0001310] +synonym: "dorsolateral placodes" EXACT OMO:0003004 [ZFA:0001310] xref: TAO:0001310 xref: VHOG:0000103 xref: XAO:0000187 @@ -66055,7 +66056,7 @@ subset: efo_slim synonym: "profundus placode" RELATED INCONSISTENT [ISBN:0471888893] synonym: "profundus V placode" RELATED INCONSISTENT [ISBN:0471888893] synonym: "trigeminal placode" EXACT [EHDAA2:0004209, VHOG:0000109, XAO:0000225, ZFA:0000162] -synonym: "trigeminal placodes" RELATED PLURAL [ZFA:0000162] +synonym: "trigeminal placodes" RELATED OMO:0003004 [ZFA:0000162] synonym: "trigeminal V placode" EXACT [] xref: EFO:0003433 xref: EHDAA2:0004209 @@ -66084,7 +66085,7 @@ synonym: "ocular primordium" EXACT [] synonym: "optic field" RELATED [] synonym: "optic placode" EXACT [GO:0046619] synonym: "optic placode of camera-type eye" EXACT [GO:0046619, https://orcid.org/0000-0002-6601-2165] -synonym: "optic placodes" RELATED PLURAL [] +synonym: "optic placodes" RELATED OMO:0003004 [] synonym: "optic primordium" EXACT [] xref: AAO:0011038 xref: EFO:0003541 @@ -66134,7 +66135,7 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "lens placodes" RELATED PLURAL [ZFA:0000122] +synonym: "lens placodes" RELATED OMO:0003004 [ZFA:0000122] synonym: "placoda lentis" RELATED LATIN [Wikipedia:Lens_placode] xref: AAO:0011055 xref: EFO:0003494 @@ -66288,7 +66289,7 @@ id: UBERON:0003078 name: epibranchial placode def: "Focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches and that produce the neuroblasts that migrate and condense to form the distal cranial ganglia." [VHOG:0000117] subset: efo_slim -synonym: "epibranchial placodes" EXACT PLURAL [ZFA:0001294] +synonym: "epibranchial placodes" EXACT OMO:0003004 [ZFA:0001294] synonym: "ventrolateral placode" RELATED [ISBN:0471888893] xref: AAO:0011036 xref: EFO:0003455 @@ -66400,7 +66401,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "muscle plate" RELATED [] synonym: "myomere" RELATED [] -synonym: "myomeres" EXACT PLURAL [TAO:0001056] +synonym: "myomeres" EXACT OMO:0003004 [TAO:0001056] synonym: "myotome region" RELATED [] synonym: "myotomes" RELATED [] synonym: "myotomus" RELATED LATIN [Wikipedia:Myotome] @@ -66575,7 +66576,7 @@ def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO] subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "sclerotomes" EXACT PLURAL [TAO:0001080] +synonym: "sclerotomes" EXACT OMO:0003004 [TAO:0001080] synonym: "sclerotomus" RELATED LATIN [Wikipedia:Sclerotome] xref: AAO:0010571 xref: AEO:0000212 @@ -66604,7 +66605,7 @@ id: UBERON:0003090 name: supraorbital lateral line def: "The lateral line that is located above the eye." [ISBN:0471888893, VHOG:0000128] subset: uberon_slim -synonym: "supraorbital lateral lines" RELATED PLURAL [ZFA:0000443] +synonym: "supraorbital lateral lines" RELATED OMO:0003004 [ZFA:0000443] synonym: "supraorbital line" EXACT [ZFA:0000443] xref: AAO:0011103 xref: TAO:0000443 @@ -66622,7 +66623,7 @@ id: UBERON:0003091 name: thyroid primordium def: "The initial thyroid precursor, the thyroid primordium, starts as a simple midline thickening and develops to form the thyroid diverticulum. This structure is initially hollow, although it later solidifies and becomes bilobed. The 2 lobes are located on either side of the midline and are connected via an isthmus." [http://emedicine.medscape.com/article/845125-overview] subset: vertebrate_core -synonym: "thyroid primordia" RELATED PLURAL [ZFA:0001081] +synonym: "thyroid primordia" RELATED OMO:0003004 [ZFA:0001081] xref: AAO:0011106 xref: BTO:0004709 xref: EHDAA2:0002033 @@ -66654,7 +66655,7 @@ synonym: "postbranchial body" RELATED [Wikipedia:Ultimobranchial_body] synonym: "telobranchial body" RELATED [MP:0003955] synonym: "telopharyngeal body" RELATED [MP:0003955] synonym: "ultimobranchial" RELATED [Wikipedia:Ultimobranchial_body] -synonym: "ultimobranchial bodies" RELATED PLURAL [Wikipedia:Ultimobranchial_body] +synonym: "ultimobranchial bodies" RELATED OMO:0003004 [Wikipedia:Ultimobranchial_body] synonym: "ultimobranchial gland" EXACT [Wikipedia:Ultimobranchial_body] synonym: "ultimopharyngeal body" EXACT [Wikipedia:Ultimobranchial_body] synonym: "ultimopharyngeal gland" EXACT [Wikipedia:Ultimobranchial_body] @@ -66725,7 +66726,7 @@ id: UBERON:0003095 name: dorsal lateral line def: "A lateral line that is located in the dorsal part of the organism." [http://orcid.org/0000-0002-6601-2165] subset: uberon_slim -synonym: "dorsal lateral lines" RELATED PLURAL [ZFA:0005112] +synonym: "dorsal lateral lines" RELATED OMO:0003004 [ZFA:0005112] xref: AAO:0011030 xref: TAO:0005112 xref: VHOG:0001677 @@ -66740,7 +66741,7 @@ property_value: homology_notes "The mechanosensory lateral line system is widely id: UBERON:0003096 name: middle lateral line subset: uberon_slim -synonym: "middle lateral lines" RELATED PLURAL [ZFA:0000344] +synonym: "middle lateral lines" RELATED OMO:0003004 [ZFA:0000344] xref: TAO:0000344 xref: VHOG:0000133 xref: XAO:0000463 @@ -66779,7 +66780,7 @@ def: "The narrow, proximal portion of the optic vesicle which connects the embry subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "optic stalks" RELATED PLURAL [ZFA:0000137] +synonym: "optic stalks" RELATED OMO:0003004 [ZFA:0000137] synonym: "pedunculus opticus" RELATED LATIN [Wikipedia:Optic_stalk] xref: AAO:0011077 xref: EHDAA2:0001318 @@ -66881,7 +66882,7 @@ subset: upper_level synonym: "anatomical surface feature" EXACT [EHDAA2:0003010] synonym: "surface feature" RELATED [] synonym: "surface region" RELATED [] -synonym: "surface structures" RELATED PLURAL [ZFA:0000292] +synonym: "surface structures" RELATED OMO:0003004 [ZFA:0000292] xref: AAO:0010337 xref: AEO_RETIRED:0000010 xref: EHDAA2_RETIRED:0003010 @@ -67051,8 +67052,8 @@ name: parapophysis def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator] subset: uberon_slim synonym: "lateral process of basiventral" EXACT [ZFA:0001362] -synonym: "parapophyses" EXACT PLURAL [TAO:0001362] -synonym: "transverse apophyses" EXACT PLURAL [TAO:0001362] +synonym: "parapophyses" EXACT OMO:0003004 [TAO:0001362] +synonym: "transverse apophyses" EXACT OMO:0003004 [TAO:0001362] synonym: "transverse apophysis" EXACT [TAO:0001362] xref: AAO:0000708 xref: TAO:0001362 @@ -67684,7 +67685,7 @@ subset: functional_classification subset: organ_slim subset: pheno_slim synonym: "genital organ" EXACT [] -synonym: "genitalia" RELATED PLURAL [] +synonym: "genitalia" RELATED OMO:0003004 [] synonym: "reproductive system organ" EXACT [] synonym: "sex organ" EXACT [] xref: EMAPA:17381 @@ -67814,9 +67815,9 @@ name: pupa def: "An organism at the pupal stage. A life cycle stage of holometabolous insects in which the organism is a pupa and starts with the larval-pupal apolysis and ends with pupal-adult apolysis." [https://github.com/obophenotype/uberon/issues/562, Wikipedia:Pupa] subset: efo_slim synonym: "aurelia" NARROW [NCBITaxon:37572, Wikipedia:Pupa] -synonym: "chrysalides" NARROW PLURAL [NCBITaxon:37572, Wikipedia:Pupa] +synonym: "chrysalides" NARROW OMO:0003004 [NCBITaxon:37572, Wikipedia:Pupa] synonym: "chrysalis" NARROW [NCBITaxon:37572, Wikipedia:Pupa] -synonym: "pupae" RELATED PLURAL [] +synonym: "pupae" RELATED OMO:0003004 [] xref: BTO:0001143 xref: EFO:0002684 xref: HAO:0000886 @@ -67984,8 +67985,8 @@ consider: HAO:0000768 id: UBERON:0003161 name: dorsal ocellus def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli] -synonym: "dorsal ocelli" RELATED PLURAL [] -synonym: "ocelli" RELATED PLURAL [] +synonym: "dorsal ocelli" RELATED OMO:0003004 [] +synonym: "ocelli" RELATED OMO:0003004 [] synonym: "ocellus" EXACT [] xref: BTO:0001758 xref: HAO:0000661 @@ -68440,7 +68441,7 @@ synonym: "lactiferous alveolus" EXACT [] synonym: "lactiferous gland alveolus" EXACT [] synonym: "lobe of breast alveolus" EXACT [OBOL:automatic] synonym: "lobe of mammary gland alveolus" EXACT [OBOL:automatic] -synonym: "mammary alveoli" RELATED PLURAL [] +synonym: "mammary alveoli" RELATED OMO:0003004 [] synonym: "mammary alveolus" EXACT [] xref: EMAPA:36566 xref: FMA:73285 @@ -68590,7 +68591,7 @@ subset: pheno_slim synonym: "digit long bone" EXACT [OBOL:automatic] synonym: "long bone of digit" EXACT [OBOL:automatic] synonym: "phalange" EXACT [] -synonym: "phalanges" EXACT PLURAL [] +synonym: "phalanges" EXACT OMO:0003004 [] synonym: "phalanx bone" EXACT [Wikipedia:Phalanx_bones] xref: CALOHA:TS-2211 xref: EMAPA:32614 @@ -69401,7 +69402,7 @@ subset: pheno_slim synonym: "lower jaw" BROAD [MA:0001906, ZFA:0001273] synonym: "lower jaw skeleton" EXACT [AAO:0000274] synonym: "mandible" BROAD [ZFA:0001273] -synonym: "mandibles" RELATED PLURAL [TAO:0001273] +synonym: "mandibles" RELATED OMO:0003004 [TAO:0001273] synonym: "mandibular series" RELATED [ZFA:0001273] xref: AAO:0000274 xref: EHDAA2:0004606 @@ -69556,9 +69557,9 @@ relationship: part_of UBERON:0002114 ! duodenum id: UBERON:0003288 name: meninx of midbrain def: "A meninx that is part of a midbrain [Automatically generated definition]." [OBOL:automatic] -synonym: "meninges of midbrain" EXACT PLURAL [OBOL:automatic] -synonym: "mesencephalon meninges" RELATED PLURAL [VHOG:0000012] -synonym: "midbrain meninges" EXACT PLURAL [OBOL:automatic] +synonym: "meninges of midbrain" EXACT OMO:0003004 [OBOL:automatic] +synonym: "mesencephalon meninges" RELATED OMO:0003004 [VHOG:0000012] +synonym: "midbrain meninges" EXACT OMO:0003004 [OBOL:automatic] synonym: "midbrain meninx" EXACT [OBOL:automatic] xref: EHDAA2:0001174 xref: EHDAA:3708 @@ -69576,8 +69577,8 @@ property_value: homology_notes "In fishes, the meninges consist of a single memb id: UBERON:0003289 name: meninx of telencephalon def: "A meninx that is part of a telencephalon [Automatically generated definition]." [OBOL:automatic] -synonym: "meninges of telencephalon" EXACT PLURAL [OBOL:automatic] -synonym: "telencephalon meninges" EXACT PLURAL [OBOL:automatic] +synonym: "meninges of telencephalon" EXACT OMO:0003004 [OBOL:automatic] +synonym: "telencephalon meninges" EXACT OMO:0003004 [OBOL:automatic] synonym: "telencephalon meninx" EXACT [OBOL:automatic] xref: EHDAA2:0001990 xref: EHDAA:5476 @@ -69627,7 +69628,7 @@ def: "A meninx that is part of a hindbrain [Automatically generated definition]. synonym: "hindbrain meninges" EXACT [OBOL:automatic] synonym: "hindbrain meninx" EXACT [OBOL:automatic] synonym: "meninges of hindbrain" EXACT [OBOL:automatic] -synonym: "rhomencephalon meninges" RELATED PLURAL [VHOG:0000011] +synonym: "rhomencephalon meninges" RELATED OMO:0003004 [VHOG:0000011] xref: EHDAA2:0000770 xref: EHDAA:3688 xref: EMAPA:17783 @@ -69645,11 +69646,11 @@ id: UBERON:0003292 name: meninx of spinal cord def: "A meninx that is part of a spinal cord [Automatically generated definition]." [OBOL:automatic] subset: pheno_slim -synonym: "menines of spinal cord" EXACT PLURAL [] +synonym: "menines of spinal cord" EXACT OMO:0003004 [] synonym: "meninges of spinal cord" EXACT [OBOL:automatic] synonym: "spinal cord meninges" EXACT [OBOL:automatic] synonym: "spinal cord meninx" EXACT [OBOL:automatic] -synonym: "spinal meninges" EXACT PLURAL [] +synonym: "spinal meninges" EXACT OMO:0003004 [] synonym: "spinal meninx" EXACT [] xref: CALOHA:TS-2148 xref: EHDAA2:0001895 @@ -69860,7 +69861,7 @@ name: mesoderm blood island alt_id: UBERON:0003305 def: "A blood island that is part of a mesoderm." [OBOL:automatic] synonym: "mesenchyme blood island" RELATED [OBOL:automatic] -synonym: "mesoderm blood islands" EXACT PLURAL [EHDAA2:0003241] +synonym: "mesoderm blood islands" EXACT OMO:0003004 [EHDAA2:0003241] xref: EHDAA2:0003241 xref: EHDAA:170 xref: EMAPA:16115 @@ -73166,8 +73167,8 @@ id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] -synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] synonym: "lower limb skin" EXACT [FMA:23102] +synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] @@ -74472,7 +74473,7 @@ synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic] synonym: "adult aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "aorta elastic lamina" EXACT [MP:0009862] -synonym: "aorta elastic laminae" EXACT PLURAL [MP:0009862] +synonym: "aorta elastic laminae" EXACT OMO:0003004 [MP:0009862] synonym: "aorta textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic connective tissue" EXACT [OBOL:automatic] synonym: "dorsal aorta elastic tissue" EXACT [OBOL:automatic] @@ -74561,11 +74562,11 @@ synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic] synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic] synonym: "elastic connective tissue of blood vessel" EXACT [OBOL:automatic] synonym: "elastic lamina" BROAD [MP:0006083] -synonym: "elastic laminae" BROAD PLURAL [MP:0006083] +synonym: "elastic laminae" BROAD OMO:0003004 [MP:0006083] synonym: "elastic tissue of blood vessel" EXACT [OBOL:automatic] synonym: "textus connectivus elasticus of blood vessel" EXACT [OBOL:automatic] synonym: "vascular elastic lamina" EXACT [http://orcid.org/0000-0002-6601-2165] -synonym: "vascular elastic laminae" EXACT PLURAL [http://orcid.org/0000-0002-6601-2165] +synonym: "vascular elastic laminae" EXACT OMO:0003004 [http://orcid.org/0000-0002-6601-2165] synonym: "vascular elastic tissue" EXACT [MP:0006083] xref: EMAPA:36300 xref: MA:0002856 @@ -75856,8 +75857,8 @@ synonym: "forelimb muscle organ" EXACT [OBOL:automatic] synonym: "free upper limb muscle" EXACT [FMA:37348] synonym: "muscle of free upper limb" EXACT [FMA:37348] synonym: "muscle of upper limb" EXACT [FMA:9621] -synonym: "musculature of arm" RELATED PLURAL [] -synonym: "musculature of the arm" RELATED PLURAL [] +synonym: "musculature of arm" RELATED OMO:0003004 [] +synonym: "musculature of the arm" RELATED OMO:0003004 [] synonym: "upper limb skeletal muscle" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "wing muscle" NARROW SENSU [Geisha:syn, NCBITaxon:8782, OBOL:automatic] xref: AAO:0000204 @@ -76089,16 +76090,16 @@ subset: pheno_slim synonym: "canine" BROAD [] synonym: "canine (tooth)" RELATED [Wikipedia:Canine_tooth] synonym: "canine eminence" RELATED [Wikipedia:Canine_tooth] -synonym: "canine teeth" RELATED PLURAL [GAID:1262, Wikipedia:Canine_tooth] +synonym: "canine teeth" RELATED OMO:0003004 [GAID:1262, Wikipedia:Canine_tooth] synonym: "canine tooth" EXACT [FMA:55636] synonym: "caniniform tooth" NARROW [] synonym: "cuspis dentis" EXACT LATIN [FMA:55636, FMA:TA] synonym: "dens caninus" RELATED [Wikipedia:Canine_tooth] synonym: "dentes canini" RELATED LATIN [Wikipedia:Canine_tooth] synonym: "dogtooth (anatomy)" RELATED [Wikipedia:Canine_tooth] -synonym: "eye teeth" RELATED PLURAL [Wikipedia:Canine_tooth] +synonym: "eye teeth" RELATED OMO:0003004 [Wikipedia:Canine_tooth] synonym: "eye tooth" RELATED [Wikipedia:Canine_tooth] -synonym: "eyeteeth" RELATED PLURAL [Wikipedia:Canine_tooth] +synonym: "eyeteeth" RELATED OMO:0003004 [Wikipedia:Canine_tooth] synonym: "eyetooth" RELATED [Wikipedia:Canine_tooth] synonym: "fang" RELATED [Wikipedia:Canine_tooth] xref: FMA:55636 @@ -76555,7 +76556,7 @@ subset: pheno_slim synonym: "articulationes metacarpophalangeae" RELATED LATIN [Wikipedia:Metacarpophalangeal_joint] synonym: "carpometacarpophalangeal joint" NARROW SENSU [NCBITaxon:8782] synonym: "knuckle" EXACT [https://orcid.org/0000-0001-5208-3432] -synonym: "knuckles" EXACT PLURAL [https://orcid.org/0000-0001-5208-3432] +synonym: "knuckles" EXACT OMO:0003004 [https://orcid.org/0000-0001-5208-3432] synonym: "metacarpal joint" BROAD [FMA:35246] synonym: "metacarpal phalangeal joint" RELATED [HP:0004294] synonym: "metacarpo-phalangeal joint" EXACT [MA:0000453] @@ -77783,7 +77784,7 @@ id: UBERON:0003843 name: dental epithelium def: "Epithelium that is part of a developing tooth or dental organ." [https://github.com/cerivs/zebrafish-anatomical-ontology/issues/107, ZFA:0005134] subset: vertebrate_core -synonym: "dental epithelia" EXACT PLURAL [ZFA:0005134] +synonym: "dental epithelia" EXACT OMO:0003004 [ZFA:0005134] synonym: "dental epithelium" EXACT [ZFA:0005134] synonym: "odontogenic epithelium" EXACT [] synonym: "reduced enamel epithelium" RELATED [BTO:0001723] @@ -78119,7 +78120,7 @@ subset: efo_slim subset: pheno_slim subset: vertebrate_core synonym: "arcus vertebra" EXACT [Wikipedia:Vertebral_arch] -synonym: "arcus vertebrae" EXACT PLURAL [Wikipedia:Vertebral_arch] +synonym: "arcus vertebrae" EXACT OMO:0003004 [Wikipedia:Vertebral_arch] synonym: "arcus vertebrae" RELATED LATIN [Wikipedia:Vertebral_arch] synonym: "arcus vertebrae (vertebralis)" EXACT [FMA:11946] synonym: "dorsal arcocentrum" EXACT [ZFA:0001066] @@ -78625,7 +78626,7 @@ synonym: "fallopian tubes" RELATED [] synonym: "female paramesonephric duct" RELATED [EHDAA2:0000504] synonym: "mammalian oviduct" EXACT [https://sourceforge.net/p/geneontology/ontology-requests/8397/] synonym: "paramesonephric duct of female" RELATED [EMAPA:35660] -synonym: "salpinges" BROAD PLURAL [] +synonym: "salpinges" BROAD OMO:0003004 [] synonym: "salpinx" BROAD [] synonym: "tuba uterina" RELATED LATIN [Wikipedia:Fallopian_tube] synonym: "uterine tube (sensu Mammalia)" EXACT [] @@ -78811,7 +78812,7 @@ relationship: part_of UBERON:0013700 ! axial musculature id: UBERON:0003900 name: epaxial myotome region def: "Portion of myotome that is dorsal to the horizontal septum." [ISBN:0073040584] -synonym: "epaxial myotome regions" EXACT PLURAL [ZFA:0001084] +synonym: "epaxial myotome regions" EXACT OMO:0003004 [ZFA:0001084] xref: TAO:0001084 xref: ZFA:0001084 is_a: UBERON:0001134 ! skeletal muscle tissue @@ -78893,7 +78894,7 @@ id: UBERON:0003904 name: bursal plica def: "Follicle containing part of bursa of Fabricius. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]." [http://orcid.org/0000-0002-6601-2165] synonym: "bursal fold" EXACT [] -synonym: "bursal plicae" EXACT PLURAL [] +synonym: "bursal plicae" EXACT OMO:0003004 [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003903 ! bursa of Fabricius @@ -79164,7 +79165,7 @@ subset: efo_slim synonym: "pancreas epithelium" RELATED [EMAPA:35645] synonym: "pancreatic anlage" RELATED [] synonym: "pancreatic bud" EXACT [ZFA:0001390] -synonym: "pancreatic buds" EXACT PLURAL [TAO:0001390] +synonym: "pancreatic buds" EXACT OMO:0003004 [TAO:0001390] xref: EFO:0003470 xref: EMAPA:35645 xref: NCIT:C34242 @@ -79249,7 +79250,7 @@ id: UBERON:0003925 name: photoreceptor inner segment layer def: "Layer of the retina composed of the inner segments of the photoreceptor cells." [ZFIN:curator] subset: vertebrate_core -synonym: "photoreceptor inner segment layers" RELATED PLURAL [ZFA:0001465] +synonym: "photoreceptor inner segment layers" RELATED OMO:0003004 [ZFA:0001465] synonym: "retina photoreceptor layer inner segment" EXACT [MA:0002471] xref: EMAPA:35687 xref: MA:0002471 @@ -79266,7 +79267,7 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0003926 name: photoreceptor outer segment layer subset: vertebrate_core -synonym: "photoreceptor outer segment layers" RELATED PLURAL [ZFA:0001466] +synonym: "photoreceptor outer segment layers" RELATED OMO:0003004 [ZFA:0001466] synonym: "retina photoreceptor layer outer segment" EXACT [MA:0002472] xref: EMAPA:35688 xref: MA:0002472 @@ -79347,7 +79348,7 @@ alt_id: UBERON:0023148 def: "White matter that is part of a diencephalon [Automatically generated definition]." [OBOL:automatic] subset: vertebrate_core synonym: "diencephalic tract/commissure" EXACT [ZFA:0000338] -synonym: "diencephalic tracts and commissures" EXACT PLURAL [TAO:0000338] +synonym: "diencephalic tracts and commissures" EXACT OMO:0003004 [TAO:0000338] synonym: "predominantly white regional part of diencephalon" EXACT [BIRNLEX:1678] synonym: "white matter of diencephalon" EXACT [FMA:83931] xref: BIRNLEX:1678 @@ -79377,7 +79378,7 @@ id: UBERON:0003933 name: cranial cartilage def: "A cartilage element that is part of the cranial skeleton." [https://orcid.org/0000-0002-6601-2165, ZFA:0001458] synonym: "cartilage of cranium" EXACT [OBOL:automatic] -synonym: "cranial cartilages" RELATED PLURAL [ZFA:0001458] +synonym: "cranial cartilages" RELATED OMO:0003004 [ZFA:0001458] synonym: "cranium cartilage" EXACT [OBOL:automatic] xref: TAO:0001458 xref: ZFA:0001458 @@ -79391,7 +79392,7 @@ name: mesenchyme pectoral fin def: "Mesenchyme that is part of a developing pectoral fin [Automatically generated definition]." [OBOL:automatic] subset: efo_slim synonym: "mesenchyme of pectoral fin" EXACT [OBOL:automatic] -synonym: "mesenchyme pectoral fins" RELATED PLURAL [ZFA:0001000] +synonym: "mesenchyme pectoral fins" RELATED OMO:0003004 [ZFA:0001000] synonym: "pectoral fin mesenchyme" EXACT [OBOL:automatic] xref: EFO:0003604 xref: TAO:0001000 @@ -79405,7 +79406,7 @@ id: UBERON:0003935 name: mesenchyme pelvic fin def: "Mesenchyme that is part of a developing pelvic fin [Automatically generated definition]." [OBOL:automatic] synonym: "mesenchyme of pelvic fin" EXACT [OBOL:automatic] -synonym: "mesenchyme pelvic fins" RELATED PLURAL [ZFA:0001449] +synonym: "mesenchyme pelvic fins" RELATED OMO:0003004 [ZFA:0001449] synonym: "pelvic fin mesenchyme" EXACT [OBOL:automatic] xref: TAO:0001449 xref: ZFA:0001449 @@ -79461,7 +79462,7 @@ subset: pheno_slim synonym: "gyri temporales transversi" RELATED LATIN [Wikipedia:Transverse_temporal_gyrus] synonym: "Heshl's gyrus" EXACT [https://github.com/obophenotype/uberon/issues/609] synonym: "transverse temporal cortex" RELATED [BIRNLEX:1389] -synonym: "transverse temporal gyri" RELATED PLURAL [Wikipedia:Transverse_temporal_gyrus] +synonym: "transverse temporal gyri" RELATED OMO:0003004 [Wikipedia:Transverse_temporal_gyrus] synonym: "transverse temporal gyrus" EXACT [Wikipedia:Transverse_temporal_gyrus] xref: BIRNLEX:1389 xref: FMA:273671 @@ -79860,14 +79861,14 @@ id: UBERON:0003964 name: prevertebral ganglion def: "The sympathetic ganglia located in front of the vertebral column and are associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia." [ISBN:0-683-40008-8, MP:0008316] subset: pheno_slim -synonym: "collateral ganglia" RELATED PLURAL [Wikipedia:Prevertebral_ganglia] +synonym: "collateral ganglia" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "collateral ganglion" EXACT [FMA:5892] -synonym: "pre-aortic ganglia" RELATED PLURAL [Wikipedia:Prevertebral_ganglia] -synonym: "preaortic ganglia" RELATED PLURAL [Wikipedia:Prevertebral_ganglia] +synonym: "pre-aortic ganglia" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] +synonym: "preaortic ganglia" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "prevertebral ganglion" RELATED [Wikipedia:Prevertebral_ganglia] -synonym: "prevertebral plexuses" RELATED PLURAL [Wikipedia:Prevertebral_ganglia] +synonym: "prevertebral plexuses" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] synonym: "previsceral ganglion" EXACT [FMA:5892] -synonym: "three great gangliated plexuses" RELATED PLURAL [Wikipedia:Prevertebral_ganglia] +synonym: "three great gangliated plexuses" RELATED OMO:0003004 [Wikipedia:Prevertebral_ganglia] xref: FMA:5892 xref: MA:0003101 xref: Wikipedia:Prevertebral_ganglia @@ -80060,12 +80061,12 @@ name: cerebellum fissure def: "One of a set of deep furrows which divide the lobules of the cerebellum. Examples: postcentral, primary and secondary furrows." [MP:0009267] subset: pheno_slim synonym: "cerebellar fissure" EXACT [] -synonym: "cerebellar fissures" RELATED PLURAL [BAMS:CBf] -synonym: "cerebellar fissures set" RELATED PLURAL [FMA:77789] -synonym: "cerebellar sulci" RELATED PLURAL [HBA:9406] +synonym: "cerebellar fissures" RELATED OMO:0003004 [BAMS:CBf] +synonym: "cerebellar fissures set" RELATED OMO:0003004 [FMA:77789] +synonym: "cerebellar sulci" RELATED OMO:0003004 [HBA:9406] synonym: "cerebellar sulcus" RELATED [] synonym: "fissurae cerebelli" EXACT LATIN [FMA:77789, FMA:TA] -synonym: "set of cerebellar fissures" RELATED PLURAL [FMA:77789] +synonym: "set of cerebellar fissures" RELATED OMO:0003004 [FMA:77789] synonym: "sulcus of cerebellum" RELATED [] xref: BAMS:CBf xref: DHBA:12828 @@ -81781,8 +81782,8 @@ id: UBERON:0004084 name: genital labium def: "One of the folds of skin which form the inner lips (labia minora) and outer lips (labia majora) on both sides of the vaginal opening." [MP:0003511] subset: pheno_slim -synonym: "genital labia" EXACT PLURAL [] -synonym: "labia" EXACT PLURAL [] +synonym: "genital labia" EXACT OMO:0003004 [] +synonym: "labia" EXACT OMO:0003004 [] synonym: "labium" EXACT [MA:0002464] xref: CALOHA:TS-2210 xref: EMAPA:30837 @@ -81825,7 +81826,7 @@ name: brain ventricle def: "One of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid." [https://github.com/obophenotype/uberon/issues/300] subset: efo_slim subset: pheno_slim -synonym: "brain ventricles" EXACT PLURAL [] +synonym: "brain ventricles" EXACT OMO:0003004 [] synonym: "cerebral ventricle" EXACT [HP:0002118] synonym: "region of ventricular system of brain" EXACT [FMA:78447] xref: BIRNLEX:1356 @@ -81851,7 +81852,7 @@ name: vena cava def: "Any of the veins that carries deoxygenated blood from a part of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Venae_cavae] subset: pheno_slim synonym: "caval vein" RELATED [] -synonym: "venae cavae" RELATED PLURAL [Wikipedia:Venae_cavae] +synonym: "venae cavae" RELATED OMO:0003004 [Wikipedia:Venae_cavae] xref: AAO:0010215 xref: BTO:0001438 xref: EMAPA:18415 @@ -82126,9 +82127,9 @@ name: anatomical conduit def: "Any tube, opening or passage that connects two distinct anatomical spaces." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy synonym: "foramen" NARROW [EHDAA2:0003080] -synonym: "foramina" NARROW PLURAL [https://orcid.org/0000-0002-6601-2165] +synonym: "foramina" NARROW OMO:0003004 [https://orcid.org/0000-0002-6601-2165] synonym: "opening" RELATED [] -synonym: "ostia" RELATED PLURAL [] +synonym: "ostia" RELATED OMO:0003004 [] synonym: "ostium" RELATED [] xref: AEO:0000080 xref: EHDAA2:0003080 @@ -82381,8 +82382,8 @@ def: "The layer of the myocardium composed of projections of contractile myocyte subset: efo_slim subset: vertebrate_core synonym: "heart muscle trabecula" RELATED [] -synonym: "heart muscle trabeculae" RELATED PLURAL [] -synonym: "myocardial trabeculae carneae" RELATED PLURAL [] +synonym: "heart muscle trabeculae" RELATED OMO:0003004 [] +synonym: "myocardial trabeculae carneae" RELATED OMO:0003004 [] synonym: "myocardial trabecular layer" EXACT [] synonym: "trabecula of heart muscle" RELATED [] synonym: "trabeculae" RELATED [TAO:0005059] @@ -82459,7 +82460,7 @@ subset: vertebrate_core synonym: "evagination" RELATED [] synonym: "eye vesicle" RELATED [XAO:0000228] synonym: "ocular vesicle" RELATED [VHOG:0000165] -synonym: "optic vesicles" RELATED PLURAL [ZFA:0000050] +synonym: "optic vesicles" RELATED OMO:0003004 [ZFA:0000050] xref: AAO:0011039 xref: EHDAA2:0001320 xref: EMAPA:16540 @@ -82518,7 +82519,7 @@ id: UBERON:0004132 name: trigeminal sensory nucleus def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]." [Wikipedia:Trigeminal_nuclei] subset: vertebrate_core -synonym: "sensory trigeminal nuclei" EXACT PLURAL [TAO:0000433] +synonym: "sensory trigeminal nuclei" EXACT OMO:0003004 [TAO:0000433] synonym: "sensory trigeminal nucleus" EXACT [ZFA:0000433] synonym: "sensory trigeminal V nucleus" EXACT [] synonym: "trigeminal sensory nucleus" EXACT [GO:0021730] @@ -83555,7 +83556,7 @@ subset: vertebrate_core synonym: "blood capillary of renal glomerulus" EXACT [OBOL:automatic] synonym: "capillary of renal glomerulus" EXACT [OBOL:automatic] synonym: "capillary vessel of renal glomerulus" EXACT [OBOL:automatic] -synonym: "glomerular capillaries" RELATED PLURAL [] +synonym: "glomerular capillaries" RELATED OMO:0003004 [] synonym: "glomerular capillary system" RELATED [MA:0002587] synonym: "renal glomerulus blood capillary" EXACT [OBOL:automatic] synonym: "renal glomerulus capillary" EXACT [OBOL:automatic] @@ -84894,7 +84895,7 @@ id: UBERON:0004290 name: dermomyotome def: "The bilaminar epithelium formed from the myotome and dermatome." [AEO:0000214] synonym: "dermamyotome" RELATED [VHOG:0000676] -synonym: "dermomyotomes" RELATED PLURAL [VHOG:0000676] +synonym: "dermomyotomes" RELATED OMO:0003004 [VHOG:0000676] xref: AAO:0010572 xref: AEO:0000214 xref: EHDAA2:0003259 @@ -85795,7 +85796,7 @@ def: "Upper part of skull, consisting of parietals, frontals, post-parietals, an comment: Terminology notes. we include calvarium as a synonym, but Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books (and HPO) state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone. Note vault may not be precisely equivalent to calvaria subset: pheno_slim synonym: "calva" EXACT [FMA:52800] -synonym: "calvaria" RELATED PLURAL [ZFA:0005606] +synonym: "calvaria" RELATED OMO:0003004 [ZFA:0005606] synonym: "calvarium" RELATED [] synonym: "cranial vault" EXACT [ZFA:0005606] synonym: "skull roof" NARROW [] @@ -85927,7 +85928,7 @@ def: "Embryonic structures which begin as undifferentiated mesenchyme attaching subset: pheno_slim synonym: "caudal suspensory ligament" RELATED [EMAPA:19089] synonym: "Gabernaculum" RELATED LATIN [Wikipedia:Gubernaculum] -synonym: "gubernaculae" RELATED PLURAL [] +synonym: "gubernaculae" RELATED OMO:0003004 [] synonym: "gubernaculum" EXACT [http://orcid.org/0000-0002-6601-2165] xref: NCIT:C82952 xref: UMLS:C0228051 {source="ncithesaurus:Gubernaculum_Testis"} @@ -85950,7 +85951,7 @@ def: "An outgrowth on the lateral trunk of the embryo that develops into a limb. comment: developmentally_induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm subset: pheno_slim synonym: "gemmae membrorum" RELATED LATIN [Wikipedia:Limb_bud] -synonym: "limb buds" EXACT PLURAL [] +synonym: "limb buds" EXACT OMO:0003004 [] synonym: "limbbud" EXACT [GO:0060174] xref: AAO:0010375 xref: BTO:0001640 @@ -86203,14 +86204,14 @@ subset: vertebrate_core synonym: "a. arcuum pharyngeorum" RELATED LATIN [Wikipedia:Aortic_arches] synonym: "aortic arch" EXACT [ZFA:0005004] synonym: "aortic arch artery" RELATED [EMAPA:16684] -synonym: "aortic arches" EXACT PLURAL [ZFA:0005004] +synonym: "aortic arches" EXACT OMO:0003004 [ZFA:0005004] synonym: "arteriae arcuum pharyngeorum" RELATED LATIN [Wikipedia:Aortic_arches] -synonym: "branchial aortic arches" EXACT PLURAL [ZFIN:ZDB-PUB-080512-6] -synonym: "branchial aortic arches" RELATED PLURAL [ZFA:0005004, ZFIN:ZDB-PUB-080512-6] +synonym: "branchial aortic arches" EXACT OMO:0003004 [ZFIN:ZDB-PUB-080512-6] +synonym: "branchial aortic arches" RELATED OMO:0003004 [ZFA:0005004, ZFIN:ZDB-PUB-080512-6] synonym: "branchial arch artery" EXACT [EMAPA:16684] synonym: "embryonic aortic arch artery" EXACT [EMAPA:16684, MP:0002672] synonym: "PAA" EXACT OMO:0003000 [MP:0002672] -synonym: "pharyngeal arch arteries" RELATED PLURAL [] +synonym: "pharyngeal arch arteries" RELATED OMO:0003004 [] synonym: "pharyngeal arch artery" EXACT [MP:0002672] synonym: "pharyngeal arch artery" RELATED [VHOG:0000122] xref: AAO:0010414 @@ -88296,25 +88297,25 @@ subset: upper_level synonym: "anatomical process" BROAD [] synonym: "anatomical protrusion" RELATED [] synonym: "flange" NARROW [VSAO:0000180] -synonym: "flanges" NARROW PLURAL [VSAO:0000180] +synonym: "flanges" NARROW OMO:0003004 [VSAO:0000180] synonym: "lamella" NARROW [VSAO:0000180] -synonym: "lamellae" NARROW PLURAL [VSAO:0000180] +synonym: "lamellae" NARROW OMO:0003004 [VSAO:0000180] synonym: "lamina" NARROW [VSAO:0000180] synonym: "laminae" NARROW [VSAO:0000180] synonym: "organ process" NARROW [] synonym: "papilla" NARROW [] synonym: "process" BROAD [VSAO:0000180] synonym: "process of organ" NARROW [] -synonym: "processes" NARROW PLURAL [VSAO:0000180] +synonym: "processes" NARROW OMO:0003004 [VSAO:0000180] synonym: "processus" EXACT LATIN [FMA:67601, FMA:TA] synonym: "projection" EXACT [] synonym: "projection" NARROW [VSAO:0000180] -synonym: "projections" NARROW PLURAL [VSAO:0000180] +synonym: "projections" NARROW OMO:0003004 [VSAO:0000180] synonym: "protrusion" RELATED [] synonym: "ridge" NARROW [VSAO:0000180] -synonym: "ridges" NARROW PLURAL [VSAO:0000180] +synonym: "ridges" NARROW OMO:0003004 [VSAO:0000180] synonym: "shelf" NARROW [VSAO:0000180] -synonym: "shelves" NARROW PLURAL [VSAO:0000180] +synonym: "shelves" NARROW OMO:0003004 [VSAO:0000180] synonym: "spine" RELATED [] xref: AAO:0010278 xref: FMA:67601 @@ -88341,7 +88342,7 @@ name: bony projection def: "Anatomical projection that is composed of bone tissue." [VSAO:wd] subset: vertebrate_core synonym: "bone process" EXACT [FMA:75433] -synonym: "bony projections" RELATED PLURAL [ZFA:0001637] +synonym: "bony projections" RELATED OMO:0003004 [ZFA:0001637] synonym: "projection of bone" EXACT [] xref: FMA:75433 xref: ZFA:0001637 @@ -88438,7 +88439,7 @@ id: UBERON:0004536 name: lymph vasculature def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105] subset: vertebrate_core -synonym: "lymph vessels" RELATED PLURAL [ZFA:0005105] +synonym: "lymph vessels" RELATED OMO:0003004 [ZFA:0005105] synonym: "lymphatic trunks and ducts" EXACT [FMA:63815] synonym: "lymphatic vasculature" EXACT [] synonym: "lymphatic vessel network" EXACT [] @@ -89740,8 +89741,8 @@ name: liver lobule def: "The polygonal structure of the liver that consists of hepatocytes radiating outward from a hepatic vein." [ISBN:0-683-40008-8, MP:0008987] subset: pheno_slim synonym: "hepatic lobule" EXACT [FMA:14471] -synonym: "lobules of liver" RELATED PLURAL [Wikipedia:Lobules_of_liver] -synonym: "lobuli hepatici" EXACT PLURAL [] +synonym: "lobules of liver" RELATED OMO:0003004 [Wikipedia:Lobules_of_liver] +synonym: "lobuli hepatici" EXACT OMO:0003004 [] synonym: "lobuli hepatis" RELATED LATIN [Wikipedia:Lobules_of_liver] synonym: "lobulus hepaticus" EXACT LATIN [FMA:14471] xref: EMAPA:35499 @@ -90784,12 +90785,12 @@ id: UBERON:0004704 name: bone fossa def: "A depression or hollow in a bone[WP]." [Wikipedia:Fossa#Anatomy] subset: vertebrate_core -synonym: "concavities" RELATED PLURAL [TAO:0001743] +synonym: "concavities" RELATED OMO:0003004 [TAO:0001743] synonym: "concavity" RELATED [TAO:0001743] synonym: "depression" RELATED [TAO:0001743] -synonym: "depressions" RELATED PLURAL [TAO:0001743] +synonym: "depressions" RELATED OMO:0003004 [TAO:0001743] synonym: "fossa" BROAD [] -synonym: "fossae" RELATED PLURAL [TAO:0001743] +synonym: "fossae" RELATED OMO:0003004 [TAO:0001743] synonym: "groove" RELATED [TAO:0001743] xref: AAO:0010439 xref: FMA:45791 @@ -90807,7 +90808,7 @@ property_value: external_ontology_notes "General Anatomical term in FMA; not res id: UBERON:0004705 name: fenestra def: "An opening in the skull or other bones[WP]." [Wikipedia:Fenestra] -synonym: "fenestrae" RELATED PLURAL [] +synonym: "fenestrae" RELATED OMO:0003004 [] xref: Wikipedia:Fenestra_(anatomy) is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001474 ! bone element @@ -91385,7 +91386,7 @@ synonym: "neural segment" RELATED [] synonym: "neural tube metameric segment" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "neural tube segment" EXACT [] synonym: "neuromere" EXACT [] -synonym: "neuromeres" EXACT PLURAL [TAO:0001328] +synonym: "neuromeres" EXACT OMO:0003004 [TAO:0001328] xref: NLX:147842 xref: TAO:0001328 xref: Wikipedia:Neuromere @@ -91505,11 +91506,11 @@ name: pronephric glomerulus alt_id: UBERON:0004191 def: "The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment." [DOI:10.1371/journal.pone.0099864, GO:0072013, GOC:mtg_kidney_jan10, PMID:10572058, PMID:15647339, PMID:9268568, XAO:0000318] synonym: "corpuscle" RELATED [XAO:0000318] -synonym: "glomera" RELATED PLURAL [XAO:0000318] +synonym: "glomera" RELATED OMO:0003004 [XAO:0000318] synonym: "glomerulus of pronephros" EXACT [] synonym: "glomus" NARROW [XAO:0000318] synonym: "pronephric glomera" RELATED [VHOG:0001237] -synonym: "pronephric glomeruli" RELATED PLURAL [VHOG:0001237] +synonym: "pronephric glomeruli" RELATED OMO:0003004 [VHOG:0001237] synonym: "pronephric glomus" RELATED [VHOG:0001237] xref: AAO:0011049 xref: SCTID:360548001 @@ -91531,7 +91532,7 @@ name: basibranchial bone def: "A basibranchial element that is bone. Basibranchial elements are ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [http://orcid.org/0000-0002-6601-2165, TAO:wd] subset: efo_slim synonym: "basibranchial bone" EXACT [TAO:0000170] -synonym: "basibranchial bones" EXACT PLURAL [] +synonym: "basibranchial bones" EXACT OMO:0003004 [] synonym: "copula 1 bone" RELATED [] synonym: "copula I bone" RELATED [] xref: AAO:0000686 @@ -91551,8 +91552,8 @@ id: UBERON:0004741 name: cleithrum def: "Dermal bone on the margin of the scapula. The cleithrum is attached to the skull in fishes, but free from the latter in amphibians and disappears early in the evolution of reptiles." [VSAO:0000187, Wikipedia:Cleithrum] subset: efo_slim -synonym: "cleithra" EXACT PLURAL [ZFA:0000184] -synonym: "cleithrum bone" EXACT PLURAL [] +synonym: "cleithra" EXACT OMO:0003004 [ZFA:0000184] +synonym: "cleithrum bone" EXACT OMO:0003004 [] xref: AAO:0000750 xref: EFO:0003507 xref: TAO:0000184 @@ -91575,7 +91576,7 @@ name: dentary def: "The dentary is a dermal bone that forms the antero-lateral part of the lower jaw in fishes and amphibians, extending to the whole lower jaw in mammals[VHOG,modified]." [VHOG:0001022] subset: efo_slim synonym: "dentale" RELATED [AAO:0000124] -synonym: "dentaries" EXACT PLURAL [TAO:0000191] +synonym: "dentaries" EXACT OMO:0003004 [TAO:0000191] synonym: "dentary bone" EXACT [ZFA:0000191] synonym: "os dentale" RELATED [AAO:0000124] synonym: "sur-angulaire" RELATED [AAO:0000124] @@ -91692,7 +91693,7 @@ name: prootic bone def: "Paired, endochondral bones forming the anterior, and lateral walls of the otic capsules." [AAO:0000514] subset: efo_slim synonym: "prootic" EXACT [AAO:0000514] -synonym: "prootics" RELATED PLURAL [TAO:0000575] +synonym: "prootics" RELATED OMO:0003004 [TAO:0000575] xref: AAO:0000514 xref: EFO:0003542 xref: TAO:0000575 @@ -91793,7 +91794,7 @@ relationship: has_part UBERON:0002532 ! epiblast (generic) [Term] id: UBERON:0004751 name: hypohyal bone -synonym: "hypohyals" EXACT PLURAL [ZFA:0001381] +synonym: "hypohyals" EXACT OMO:0003004 [ZFA:0001381] xref: AAO:0000958 xref: TAO:0001381 xref: ZFA:0001381 @@ -92114,7 +92115,7 @@ name: posterior nasal aperture def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, Wikipedia:Posterior_nasal_apertures] subset: pheno_slim synonym: "choana" BROAD [Wikipedia:Choane, XAO:0000277] -synonym: "choanae" RELATED PLURAL [VHOG:0000545] +synonym: "choanae" RELATED OMO:0003004 [VHOG:0000545] synonym: "internal naris" BROAD [MA:0001323] synonym: "nasopharyngeal naris" RELATED [] synonym: "posterior choana" RELATED [HP:0004496] @@ -92146,10 +92147,10 @@ id: UBERON:0004772 name: eyelid tarsus def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [Wikipedia:Tarsus_(eyelids)] subset: organ_slim -synonym: "eyelid tarsi" RELATED PLURAL [] +synonym: "eyelid tarsi" RELATED OMO:0003004 [] synonym: "tarsal plate" EXACT [FMA:59086] synonym: "tarsal plate of eyelid" EXACT [FMA:59086] -synonym: "tarsi" RELATED PLURAL [] +synonym: "tarsi" RELATED OMO:0003004 [] synonym: "tarsus palpebralis" EXACT [PMID:16496288] xref: FMA:59086 xref: MA:0000270 @@ -92516,7 +92517,7 @@ def: "The thymic connective tissue which extends into the parenchyma." [ISBN:0-3 subset: pheno_slim synonym: "thymic trabecula" EXACT [OBOL:automatic] synonym: "thymus gland trabecula" EXACT [OBOL:automatic] -synonym: "thymus trabeculae" EXACT PLURAL [] +synonym: "thymus trabeculae" EXACT OMO:0003004 [] synonym: "trabecula of thymus" EXACT [OBOL:automatic] synonym: "trabecula of thymus gland" EXACT [OBOL:automatic] xref: MA:0002674 @@ -93323,8 +93324,8 @@ id: UBERON:0004852 name: cardiovascular system endothelium def: "An endothelium that is part of the cardiovascular system." [https://orcid.org/0000-0002-6601-2165] subset: vertebrate_core -synonym: "endothelia" RELATED PLURAL [ZFA:0001639] -synonym: "vascular endothelia" RELATED PLURAL [XAO:0000356] +synonym: "endothelia" RELATED OMO:0003004 [ZFA:0001639] +synonym: "vascular endothelia" RELATED OMO:0003004 [XAO:0000356] xref: BTO:0001853 xref: EMAPA:35201 xref: GAID:519 @@ -93481,7 +93482,7 @@ def: "Dermal bone that covers the otic region and may articulate with its antime synonym: "actinopterygian parietal" EXACT [] synonym: "frontal bone" NARROW [FMA:52734] synonym: "parietal bone" NARROW SENSU [TAO:0000486] -synonym: "parietals" RELATED PLURAL [TAO:0000486] +synonym: "parietals" RELATED OMO:0003004 [TAO:0000486] synonym: "post parietal" RELATED [ZFA:0000486] xref: TAO:0000486 xref: VHOG:0001327 @@ -93506,7 +93507,7 @@ def: "Dermal bone that bears part of the supraorbital canal and usually covers a synonym: "actinopterygian frontal" EXACT [TAO:0000514] synonym: "actinopterygian frontal bone" EXACT [TAO:0000514] synonym: "frontal bone" NARROW [TAO:0000514] -synonym: "frontals" RELATED PLURAL [TAO:0000514] +synonym: "frontals" RELATED OMO:0003004 [TAO:0000514] xref: TAO:0000514 xref: VHOG:0001324 xref: ZFA:0000514 @@ -93542,7 +93543,7 @@ property_value: external_ontology_notes "note that the AAO and ZFA class is a ca id: UBERON:0004868 name: tapetum lucidum of camera-type eye def: "A layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors." [PMID:14738502, Wikipedia:Tapetum_lucidum] -synonym: "tapeta lucida" EXACT PLURAL [] +synonym: "tapeta lucida" EXACT OMO:0003004 [] synonym: "tapetum lucidum" EXACT [] xref: Wikipedia:Tapetum_lucidum is_a: UBERON:0015169 ! tapetum @@ -93721,7 +93722,7 @@ def: "Belt-like region of presumptive mesoderm at the equator of the late blastu subset: early_development synonym: "margin" BROAD [ZFA:0000038] synonym: "marginal zone" BROAD [XAO:0000068] -synonym: "margins" RELATED PLURAL [TAO:0000038] +synonym: "margins" RELATED OMO:0003004 [TAO:0000038] xref: AAO:0010448 xref: TAO:0000038 xref: XAO:0000068 @@ -97620,7 +97621,7 @@ subset: efo_slim subset: vertebrate_core synonym: "granulosa cell layer" RELATED [TAO:0001112] synonym: "granulosa cell layer of ovarian follicle" EXACT [FMA:18660] -synonym: "granulosa cell layers" RELATED PLURAL [ZFA:0001112] +synonym: "granulosa cell layers" RELATED OMO:0003004 [ZFA:0001112] synonym: "membrana granulosa" BROAD [] synonym: "membrana granulosa of ovarian follicle" EXACT [FMA:18660] synonym: "ovary stratum granulosum" EXACT [MA:0001460] @@ -98058,7 +98059,7 @@ intersection_of: part_of UBERON:0002372 ! tonsil id: UBERON:0005208 name: right atrium valve def: "A valve that is part of a right atrium [Automatically generated definition]." [OBOL:automatic] -synonym: "right atrium valves" RELATED PLURAL [EHDAA2:0000302] +synonym: "right atrium valves" RELATED OMO:0003004 [EHDAA2:0000302] synonym: "superior vena cava valve" RELATED [EMAPA:17327] synonym: "valve of right atrium" EXACT [EMAPA:17327] xref: EHDAA2:0000302 @@ -99119,7 +99120,7 @@ synonym: "cortical cord" RELATED [] synonym: "cortical sex cord" RELATED [] synonym: "ovary primitive sex cord" RELATED [] synonym: "ovigerous cord" EXACT [] -synonym: "ovigerous cords" EXACT PLURAL [VHOG:0001339] +synonym: "ovigerous cords" EXACT OMO:0003004 [VHOG:0001339] synonym: "secondary cord" RELATED [] xref: EHDAA2:0001363 xref: EHDAA:8130 @@ -99285,7 +99286,7 @@ def: "Discrete, cystlike units of the thyroid gland that are lined with cuboidal subset: pheno_slim subset: uberon_slim subset: vertebrate_core -synonym: "thyroid follicles" RELATED PLURAL [ZFA:0001072] +synonym: "thyroid follicles" RELATED OMO:0003004 [ZFA:0001072] synonym: "thyroid gland follicle" EXACT [] xref: BTO:0004708 xref: EMAPA:19307 @@ -99306,7 +99307,7 @@ id: UBERON:0005306 name: blastema def: "A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]." [Wikipedia:Blastema, ZFA:0001270, ZFIN:ZDB-PUB-061108-12] subset: efo_slim -synonym: "blastemata" EXACT PLURAL [] +synonym: "blastemata" EXACT OMO:0003004 [] synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12] xref: BTO:0001638 xref: EFO:0003658 @@ -99718,7 +99719,7 @@ def: "A peritoneal diverticulum in the embryonic lower anterior abdominal wall t subset: pheno_slim synonym: "peritoneal diverticulum" RELATED [] synonym: "processus vaginalis" BROAD [] -synonym: "processus vaginalis peritonei" RELATED PLURAL [MP:0009218, Wikipedia:Processus_vaginalis] +synonym: "processus vaginalis peritonei" RELATED OMO:0003004 [MP:0009218, Wikipedia:Processus_vaginalis] synonym: "processus vaginalis peritonei masculinus" NARROW LATIN [Wikipedia:Processus_vaginalis] synonym: "processus vaginalis peritoneus" EXACT [MP:0009218] synonym: "saccus vaginalis" EXACT LATIN [Wikipedia:Processus_vaginalis] @@ -100179,7 +100180,7 @@ synonym: "inferior ganglion of vagus" EXACT [FMA:6230] synonym: "inferior ganglion of vagus nerve" EXACT [FMA:6230] synonym: "inferior vagus ganglion" RELATED [EMAPA:17155] synonym: "inferior vagus X" BROAD [EMAPA:17155] -synonym: "nodose ganglia" RELATED PLURAL [] +synonym: "nodose ganglia" RELATED OMO:0003004 [] synonym: "nodose ganglion" EXACT [FMA:6230] synonym: "tenth cranial nerve nodose ganglion" EXACT [FMA:6230] synonym: "vagus nerve inferior ganglion" EXACT [FMA:6230] @@ -100365,7 +100366,7 @@ name: spinal cord lateral column def: "The region of white matter of the spinal cord that is located between the dorsal and ventral spinal roots." [ISBN:0-683-40008-8, MP:0009678] subset: pheno_slim synonym: "lateral column" RELATED [] -synonym: "lateral columns" RELATED PLURAL [ZFA:0000531] +synonym: "lateral columns" RELATED OMO:0003004 [ZFA:0000531] xref: EV:0100322 xref: MA:0002750 xref: neuronames:1673 @@ -100648,7 +100649,7 @@ alt_id: UBERON:0011916 def: "One of the small globular masses of dense neuropil in the olfactory bulb, containing the first synapse in the olfactory pathway[BTO]." [Dorlands_Medical_Dictionary:MerckMedicus, Wikipedia:Glomerulus_(olfaction)] synonym: "glomerulus of olfactory bulb" EXACT [OBOL:automatic] synonym: "olfactory bulb glomerulus" EXACT [OBOL:automatic] -synonym: "olfactory glomeruli" EXACT PLURAL [] +synonym: "olfactory glomeruli" EXACT OMO:0003004 [] xref: BTO:0003653 xref: NIF_Subcellular:nlx_subcell_20090503 xref: Wikipedia:Glomerulus_(olfaction) @@ -101217,7 +101218,7 @@ subset: pheno_slim subset: vertebrate_core synonym: "choroid fissure" RELATED [MA:0001305, XAO:0000474, ZFA:0001284] synonym: "choroid fissure - optic fissure" EXACT [VHOG:0000655] -synonym: "optic fissures" EXACT PLURAL [ZFA:0001284] +synonym: "optic fissures" EXACT OMO:0003004 [ZFA:0001284] synonym: "optic stalk fissure" EXACT [EHDAA2:0001319] synonym: "ventral choroidal fissure" RELATED [XAO:0000474] xref: AAO:0011026 @@ -101358,7 +101359,7 @@ comment: at this time we have no need to name a more specific 'pectoral fin bud' subset: efo_slim synonym: "forelimb - pectoral fin bud" EXACT [VHOG:0001754] synonym: "pectoral fin bud" RELATED [TAO:0000141] -synonym: "pectoral fin buds" RELATED PLURAL [TAO:0000141] +synonym: "pectoral fin buds" RELATED OMO:0003004 [TAO:0000141] xref: EFO:0003430 xref: TAO:0000141 xref: VHOG:0001754 @@ -101379,7 +101380,7 @@ comment: at this time we have no need to name a more specific 'pelvic fin bud' c subset: efo_slim synonym: "hindlimb/pelvic fin bud" EXACT [VHOG:0001260] synonym: "pelvic fin bud" RELATED [TAO:0001384] -synonym: "pelvic fin buds" RELATED PLURAL [ZFA:0001384] +synonym: "pelvic fin buds" RELATED OMO:0003004 [ZFA:0001384] xref: EFO:0003469 xref: TAO:0001384 xref: VHOG:0001260 @@ -101476,7 +101477,7 @@ synonym: "future retinal pigmented epithelium" EXACT [] synonym: "future RPE" EXACT [] synonym: "optic cup outer layer" EXACT [EHDAA2:0001306] synonym: "outer layer optic cup" EXACT [ZFA:0000064] -synonym: "presumptive pigmented epithelia" EXACT PLURAL [ZFA:0000064] +synonym: "presumptive pigmented epithelia" EXACT OMO:0003004 [ZFA:0000064] synonym: "presumptive pigmented epithelium" RELATED [TAO:0000064] xref: EHDAA2:0001306 xref: EMAPA:16677 @@ -101501,7 +101502,7 @@ synonym: "future retinal neural layer" EXACT [] synonym: "inner layer optic cup" EXACT [ZFA:0001071] synonym: "optic cup inner layer" EXACT [EHDAA2:0001304] synonym: "presumptive retina" RELATED [TAO:0001071] -synonym: "presumptive retinas" EXACT PLURAL [ZFA:0001071] +synonym: "presumptive retinas" EXACT OMO:0003004 [ZFA:0001071] xref: EHDAA2:0001304 xref: EMAPA:16675 xref: TAO:0001071 @@ -102068,7 +102069,7 @@ name: hepatic cord def: "A three-dimensional arrangement formed by plates of hepatocytes, usually one cell thick, that radiates from the center of the liver lobule; hepatic laminae are highly branched, irregular structures bordered by endothelial lined vascular spaces called hepatic sinusoids." [MGI:anna] subset: pheno_slim synonym: "hepatic lamina" EXACT [FMA:14655] -synonym: "hepatic laminae" EXACT PLURAL [MP:MP] +synonym: "hepatic laminae" EXACT OMO:0003004 [MP:MP] synonym: "hepatic plate" RELATED INCONSISTENT [FMA:14655] synonym: "lamina hepatica" EXACT [FMA:14655] synonym: "liver cell plate" EXACT [FMA:14655] @@ -102688,7 +102689,7 @@ synonym: "omphalomesenteric vein" RELATED [EMAPA:16244] synonym: "vascular vitelline network" EXACT [XAO:0004147] synonym: "vein of omphalomesenteric system" RELATED [] synonym: "vena vitellina" EXACT LATIN [Wikipedia:Vitelline_veins] -synonym: "vitelline veins" RELATED PLURAL [XAO:0004147] +synonym: "vitelline veins" RELATED OMO:0003004 [XAO:0004147] xref: EMAPA:36021 xref: FMA:70305 xref: NCIT:C34329 @@ -102770,11 +102771,11 @@ id: UBERON:0005492 name: hyaloid vessel def: "A blood vessel that is associated with the lens. In mammals, this is transient and normally nourishes the retina, immature lens and primary vitreous of the developing eye." [MP:0001289, ZFA:0005046] subset: vertebrate_core -synonym: "hyaloid blood vessels" EXACT PLURAL [XAO:0004154] +synonym: "hyaloid blood vessels" EXACT OMO:0003004 [XAO:0004154] synonym: "hyaloid capillary system" RELATED [MP:0001289] synonym: "hyaloid vascular system" RELATED [MP:0001289] synonym: "hyaloid vasculature" RELATED [ZFA:0005046] -synonym: "hyaloid vessels" EXACT PLURAL [TAO:0005046] +synonym: "hyaloid vessels" EXACT OMO:0003004 [TAO:0005046] xref: EHDAA:4735 xref: TAO:0005046 xref: VHOG:0000232 @@ -103829,7 +103830,7 @@ relationship: drains UBERON:0010708 ! pectoral complex id: UBERON:0005611 name: inner canthus def: "A corner of the medial (inner) part of an eye." [http://orcid.org/0000-0002-6601-2165] -synonym: "inner canthi" RELATED PLURAL [] +synonym: "inner canthi" RELATED OMO:0003004 [] synonym: "medial canthus" RELATED [MA:0001262] synonym: "medial canthus of eye" RELATED [] synonym: "medial palpebral commissure" EXACT [FMA:59316] @@ -103962,7 +103963,7 @@ def: "The outgrowths of the embryonic maxillary prominences that come together d subset: pheno_slim synonym: "lateral palatine process" EXACT [http://medical-dictionary.thefreedictionary.com/palatal+shelf] synonym: "palatal shelf" EXACT [MA:0001581] -synonym: "palatal shelves" RELATED PLURAL [] +synonym: "palatal shelves" RELATED OMO:0003004 [] synonym: "palatine shelf" RELATED [VHOG:0000378] synonym: "secondary palatal shelf" EXACT [] xref: EHDAA2:0001364 @@ -104050,7 +104051,7 @@ name: semi-lunar valve def: "The valves that gate the flow of blood from the ventricles into the aorta and pulmonary trunk." [MGI:pvb, MP:0002746] subset: pheno_slim synonym: "semilunar valve" EXACT [MA:0002790] -synonym: "semilunar valves" EXACT PLURAL [MA:0002790] +synonym: "semilunar valves" EXACT OMO:0003004 [MA:0002790] xref: EHDAA2:0001823 xref: EHDAA:4408 xref: EMAPA:35760 @@ -105672,9 +105673,9 @@ synonym: "aorta dorsalis" EXACT LATIN [XAO:0000051] synonym: "aortae dorsales" RELATED LATIN [Wikipedia:Dorsal_aorta] synonym: "DA" EXACT [ZFA:0000014] synonym: "dorsal aorta root" RELATED [VHOG:0000264] -synonym: "dorsal aortae" RELATED PLURAL [Wikipedia:Dorsal_aorta] +synonym: "dorsal aortae" RELATED OMO:0003004 [Wikipedia:Dorsal_aorta] synonym: "dorsal aortic root" RELATED [VHOG:0000264] -synonym: "dorsal aortæ" RELATED PLURAL [Wikipedia:Dorsal_aorta] +synonym: "dorsal aortæ" RELATED OMO:0003004 [Wikipedia:Dorsal_aorta] xref: AAO:0011029 xref: BTO:0004673 xref: EHDAA:402 @@ -106057,7 +106058,7 @@ name: spinal cord segment synonym: "axial part of spinal cord" EXACT [BIRNLEX:2665] synonym: "axial regional part of spinal cord" EXACT [BIRNLEX:2665] synonym: "segment of spinal cord" EXACT [FMA:62420] -synonym: "spinal neuromeres" RELATED PLURAL [TAO:0001332] +synonym: "spinal neuromeres" RELATED OMO:0003004 [TAO:0001332] xref: BIRNLEX:2665 xref: FMA:62420 xref: MA:0003080 @@ -106656,7 +106657,7 @@ id: UBERON:0005896 name: obsolete jointed/prehensile appendage def: "A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]." [GO:0035108, Wikipedia:Limb_(anatomy)] synonym: "extremitaet" RELATED [BTO:0001492] -synonym: "extremities" RELATED PLURAL [] +synonym: "extremities" RELATED OMO:0003004 [] synonym: "extremity" RELATED [] synonym: "limb" RELATED [AEO:0000172, BTO:0001492, GO:0035108] property_value: curator_notes "this class was originally introduced to account for the previously vague use of the term 'limb' in GO." xsd:string @@ -106925,10 +106926,10 @@ name: external naris def: "A naris that provides one of the small external openings of the head that give passage to air for breathing." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Nostril] subset: pheno_slim subset: vertebrate_core -synonym: "anterior nares" RELATED PLURAL [VHOG:0000544] +synonym: "anterior nares" RELATED OMO:0003004 [VHOG:0000544] synonym: "anterior naris" RELATED [ZFA:0001427] synonym: "blowhole" NARROW [Wikipedia:Blowhole_(anatomy)] -synonym: "external nares" EXACT PLURAL [] +synonym: "external nares" EXACT OMO:0003004 [] synonym: "naris" BROAD [ZFA:0000550] synonym: "nostril" EXACT [FMA:59645, XAO:0003033] xref: AAO:0000024 @@ -107079,7 +107080,7 @@ property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-sk id: UBERON:0005945 name: neurocranial trabecula subset: efo_slim -synonym: "neurocranial trabeculae" EXACT PLURAL [ZFA:0001321] +synonym: "neurocranial trabeculae" EXACT OMO:0003004 [ZFA:0001321] synonym: "trabecula" BROAD SENSU [ZFA:0001321] synonym: "trabecular cartilage" BROAD [ZFA:0001321] xref: EFO:0003677 @@ -107440,12 +107441,12 @@ id: UBERON:0005980 name: pectinate muscle def: "The prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions[MP]." [MP:0010496, Wikipedia:Musculi_pectinati] subset: pheno_slim -synonym: "musculi pectinati" EXACT PLURAL [Wikipedia:Musculi_pectinati] +synonym: "musculi pectinati" EXACT OMO:0003004 [Wikipedia:Musculi_pectinati] synonym: "musculi pectinati atrii" RELATED LATIN [Wikipedia:Musculi_pectinati] synonym: "musculi pectinati atrii dextri" NARROW LATIN [Wikipedia:Musculi_pectinati] synonym: "musculi pectinati atrii sinistri" NARROW LATIN [Wikipedia:Musculi_pectinati] synonym: "musculus pectinatus" EXACT LATIN [FMA:12226] -synonym: "pectinate muscles" RELATED PLURAL [ZFA:0005809] +synonym: "pectinate muscles" RELATED OMO:0003004 [ZFA:0005809] xref: EMAPA:37935 {source="MA:th"} xref: FMA:12226 xref: SCTID:277718001 @@ -107570,7 +107571,7 @@ name: atrium myocardial trabecula def: "The supporting bundles of muscular fibers lining the walls of the atrial myocardium." [MP:0010581, ZFA:0005810] subset: pheno_slim synonym: "atrial trabecula" EXACT [] -synonym: "atrium myocardial trabeculae" EXACT PLURAL [MP:0010581] +synonym: "atrium myocardial trabeculae" EXACT OMO:0003004 [MP:0010581] synonym: "trabecula of atrium" EXACT [] synonym: "trabecular layer of atrium" EXACT [] synonym: "trabecular layer of the atrium" EXACT [ZFA:0005810] @@ -107661,7 +107662,7 @@ id: UBERON:0005994 name: chorda tendineae def: "The tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria." [MP:0010608, Wikipedia:Chordae_tendineae] subset: pheno_slim -synonym: "chordae tendinea" RELATED PLURAL [FMA:12225] +synonym: "chordae tendinea" RELATED OMO:0003004 [FMA:12225] synonym: "chordae tendineae cordis" RELATED LATIN [Wikipedia:Chordae_tendineae] xref: EMAPA:36322 xref: FMA:12225 @@ -107888,7 +107889,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Gr [Term] id: UBERON:0006011 name: hyaloid vein -synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047] +synonym: "hyaloid veins" EXACT OMO:0003004 [ZFA:0005047] xref: EHDAA2:0000791 xref: TAO:0005047 xref: XAO:0004156 @@ -108600,7 +108601,7 @@ synonym: "stria medullaris (Wenzel-Wenzel)" EXACT [BIRNLEX:1066] synonym: "stria medullaris (Wenzel-Wenzel)" RELATED [NeuroNames:298] synonym: "stria medullaris of thalamus" EXACT [BIRNLEX:1066, FMA:62080] synonym: "stria medullaris of the thalamus" RELATED [NeuroNames:298] -synonym: "stria medullaris thalami" EXACT PLURAL [BIRNLEX:1066] +synonym: "stria medullaris thalami" EXACT OMO:0003004 [BIRNLEX:1066] synonym: "stria medullaris thalamica" EXACT [BIRNLEX:1066] xref: BAMS:sm xref: BAMS:st @@ -109341,7 +109342,7 @@ relationship: part_of UBERON:0002316 ! white matter id: UBERON:0006134 name: nerve fiber def: "A threadlike extension of a nerve cell and consists of an axon and myelin sheath (if it is myelinated) in the nervous system. There are nerve fibers in the central nervous system and peripheral nervous system. A nerve fiber may be myelinated and/or unmyelinated. In the central nervous system (CNS), myelin by oligodendroglia cells is formed. Schwann cells form myelin in the peripheral nervous system (PNS). Schwann cells also make a thin covering in an axon without myelin (in the PNS). A peripheral nerve fiber contains an axon, myelin sheath, schwann cells and its endoneurium. There are no endoneurium and schwann cells in the central nervous system." [Wikipedia:Nervous_system_fiber] -synonym: "nerve fibers" RELATED PLURAL [BAMS:nfi] +synonym: "nerve fibers" RELATED OMO:0003004 [BAMS:nfi] synonym: "nerve fibre" EXACT [FMA:5914] synonym: "neurofibra" EXACT LATIN [FMA:5914, FMA:TA] synonym: "neurofibra" RELATED LATIN [Wikipedia:Nerve_fiber] @@ -109433,8 +109434,8 @@ is_a: UBERON:0004564 ! hindlimb digital vein id: UBERON:0006140 name: palmar digital vein def: "The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins. Some sources distinguish between the 'proper palmar digital veins', which are more distal, and the 'common palmar digital veins', which are more proximal." [Wikipedia:Palmar_digital_veins] -synonym: "palmar digital veins" EXACT PLURAL [FMA:70895] -synonym: "palmar digital veins set" EXACT PLURAL [FMA:70895] +synonym: "palmar digital veins" EXACT OMO:0003004 [FMA:70895] +synonym: "palmar digital veins set" EXACT OMO:0003004 [FMA:70895] synonym: "set of palmar digital veins" RELATED [FMA:70895] synonym: "venae digitales palmares" EXACT LATIN [FMA:70895, FMA:TA] synonym: "venae digitales palmares" RELATED LATIN [Wikipedia:Palmar_digital_veins] @@ -109581,7 +109582,7 @@ relationship: part_of UBERON:0002113 ! kidney id: UBERON:0006172 name: rectal diverticulum def: "The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior." [GO:0039009] -synonym: "rectal diverticula" RELATED PLURAL [XAO:0001015] +synonym: "rectal diverticula" RELATED OMO:0003004 [XAO:0001015] xref: XAO:0001015 is_a: UBERON:0004111 ! anatomical conduit relationship: continuous_with UBERON:0000163 ! embryonic cloaca @@ -111489,7 +111490,7 @@ synonym: "inferior rectus muscle" EXACT [] synonym: "m. rectus inferior" EXACT [] synonym: "musculus rectus inferior" EXACT [AAO:0010101] synonym: "musculus rectus inferior bulbi" RELATED LATIN [Wikipedia:Inferior_rectus_muscle] -synonym: "ventral recti" RELATED PLURAL [TAO:0000457] +synonym: "ventral recti" RELATED OMO:0003004 [TAO:0000457] synonym: "ventral rectus" RELATED [TAO:0000457] synonym: "ventral rectus extraocular muscle" EXACT [VHOG:0001130] xref: AAO:0010101 @@ -111512,7 +111513,7 @@ name: superior rectus extraocular muscle def: "The superior rectus muscle is a muscle in the orbit. It is one of the extraocular muscles. It is innervated by the superior division of the oculomotor nerve (Cranial Nerve III). In the primary position (looking straight ahead), the superior rectus muscle's primary function is elevation, although it also contributes to intorsion and adduction." [Wikipedia:Superior_rectus_muscle] subset: pheno_slim subset: vertebrate_core -synonym: "dorsal recti" RELATED PLURAL [ZFA:0000345] +synonym: "dorsal recti" RELATED OMO:0003004 [ZFA:0000345] synonym: "dorsal rectus" RELATED [TAO:0000345] synonym: "dorsal rectus extraocular muscle" EXACT [VHOG:0001128] synonym: "m. rectus superior" EXACT [] @@ -111712,7 +111713,7 @@ id: UBERON:0006337 name: distal early tubule def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [ZFA:0005293] subset: vertebrate_core -synonym: "distal early tubules" RELATED PLURAL [ZFA:0005293] +synonym: "distal early tubules" RELATED OMO:0003004 [ZFA:0005293] synonym: "early distal tubule of capillary loop nephron" RELATED [EMAPA:27788] synonym: "IT1" EXACT OMO:0003000 [XAO:0000287] synonym: "IT2" EXACT OMO:0003000 [XAO:0000287] @@ -111996,7 +111997,7 @@ synonym: "touch hair" EXACT [MP:0009003] synonym: "true whisker" NARROW [] synonym: "vibrissa" RELATED [] synonym: "vibrissa hair" EXACT [MA:0000782] -synonym: "vibrissae" RELATED PLURAL [] +synonym: "vibrissae" RELATED OMO:0003004 [] synonym: "whisker" NARROW [MA:0000163] xref: BTO:0003488 xref: EMAPA:26747 @@ -113144,7 +113145,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/39/Gr id: UBERON:0006508 name: interosseous muscle of autopod def: "Any of the muscles of the autopod region that lie between metacarpal or metatarsal bones." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Interossei] -synonym: "interossei" RELATED PLURAL [] +synonym: "interossei" RELATED OMO:0003004 [] synonym: "interosseous" BROAD [] synonym: "interosseus muscle" EXACT [] synonym: "m. interosseous" EXACT [] @@ -113191,7 +113192,7 @@ name: kidney calyx def: "Recesses of the kidney pelvis which divides into two wide, cup-shaped major renal calices, with each major calix subdivided into 7 to 14 minor calices. Urine empties into a minor calix from collecting tubules, then passes through the major calix, renal pelvis, and ureter to enter the urinary bladder. (From Moore, Clinically Oriented Anatomy, 3d ed, p211)." [MESH:A05.810.453.537.503] subset: pheno_slim synonym: "calices renales" EXACT LATIN [] -synonym: "calices renales" RELATED PLURAL [] +synonym: "calices renales" RELATED OMO:0003004 [] synonym: "calyx" BROAD [EMAPA:18676] synonym: "renal calix" EXACT [] synonym: "renal calyx" EXACT [MA:0000369] @@ -113814,9 +113815,9 @@ synonym: "ligamentum genitoinguinale" RELATED LATIN [http://www.drugs.com/dict/g synonym: "plica gubernaculi" RELATED [PMID:11997885] synonym: "plica gubernaculum" RELATED [] synonym: "plica gubernatrix" RELATED [http://www.drugs.com/dict/genitoinguinal-ligament.html] -synonym: "plicae gubernaculi" RELATED PLURAL [] -synonym: "plicae gubernaculum" RELATED PLURAL [] -synonym: "plicae gubernatrix" RELATED PLURAL [http://www.drugs.com/dict/genitoinguinal-ligament.html] +synonym: "plicae gubernaculi" RELATED OMO:0003004 [] +synonym: "plicae gubernaculum" RELATED OMO:0003004 [] +synonym: "plicae gubernatrix" RELATED OMO:0003004 [http://www.drugs.com/dict/genitoinguinal-ligament.html] xref: BTO:0002814 xref: SCTID:300350000 is_a: UBERON:0000064 ! organ part @@ -113856,7 +113857,7 @@ subset: efo_slim synonym: "quadrate" EXACT [TAO:0000621] synonym: "quadrate - incus" BROAD [VHOG:0000689] synonym: "quadrate bone" EXACT [AAO:0000525] -synonym: "quadrates" RELATED PLURAL [ZFA:0000621] +synonym: "quadrates" RELATED OMO:0003004 [ZFA:0000621] xref: AAO:0000525 xref: EFO:0003547 xref: TAO:0000621 @@ -114098,7 +114099,7 @@ property_value: editor_note "may be obsoleted after integumental system overhaul id: UBERON:0006614 name: aponeurosis def: "A sheet of extracellular matrix." [AEO:0000092, Wikipedia:Aponeurosis] -synonym: "aponeuroses" RELATED PLURAL [Wikipedia:Aponeurosis] +synonym: "aponeuroses" RELATED OMO:0003004 [Wikipedia:Aponeurosis] synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis] xref: AEO:0000092 xref: EHDAA2:0003092 @@ -114371,7 +114372,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ef/Gr id: UBERON:0006640 name: crus of clitoris def: "The continuation of the clitoris on each side of the corpus cavernosum, diverging from the body posteriorly and attached to the pubic arch." [http://dictionary.reference.com/browse/crus+of+clitoris] -synonym: "clitoral crura" RELATED PLURAL [Wikipedia:Clitoral_crura] +synonym: "clitoral crura" RELATED OMO:0003004 [Wikipedia:Clitoral_crura] synonym: "clitoris crus" EXACT [FMA:20175] synonym: "crura of clitoris" RELATED [Wikipedia:Clitoral_crura] synonym: "crus clitoridis" RELATED [Wikipedia:Clitoral_crura] @@ -114563,7 +114564,7 @@ id: UBERON:0006651 name: appendix testis def: "The appendix testis is a vestigial remnant of the Mullerian duct, present on the upper pole of the testis and attached to the tunica vaginalis. It is present about 90% of the time." [Wikipedia:Appendix_of_testis] comment: See also 'vesicular appendage of epoophoron'. TODO: check vesicular appendages -synonym: "appendices testis" RELATED PLURAL [Wikipedia:Appendix_of_testis] +synonym: "appendices testis" RELATED OMO:0003004 [Wikipedia:Appendix_of_testis] synonym: "appendix of testis" EXACT [FMA:19846] synonym: "appendix of the testis" RELATED [Wikipedia:Appendix_of_testis] synonym: "appendix testis" RELATED LATIN [Wikipedia:Appendix_of_testis] @@ -115705,7 +115706,7 @@ synonym: "lateral angle of eye" RELATED [FMA:59321] synonym: "lateral canthus" RELATED [MA:0001264] synonym: "lateral canthus of eye" EXACT [FMA:59321] synonym: "lateral palpebral commissure" EXACT [FMA:59315] -synonym: "outer canthi" RELATED PLURAL [] +synonym: "outer canthi" RELATED OMO:0003004 [] synonym: "temporal canthus" RELATED [] xref: EHDAA2:0000910 xref: EHDAA:9039 @@ -115775,7 +115776,7 @@ def: "A canthus is a corner of the eye where the upper and lower eyelids meet. T synonym: "angle of eye" RELATED [FMA:59222] synonym: "bicanthal" RELATED [Wikipedia:Canthus] synonym: "bicanthal plane" RELATED [Wikipedia:Canthus] -synonym: "canthi" RELATED PLURAL [Wikipedia:Canthus] +synonym: "canthi" RELATED OMO:0003004 [Wikipedia:Canthus] synonym: "canthoplasty" RELATED [Wikipedia:Canthus] synonym: "canthorum" RELATED [Wikipedia:Canthus] synonym: "canthus (anatomy)" RELATED [Wikipedia:Canthus] @@ -115937,7 +115938,7 @@ synonym: "zonula ciliaris" RELATED LATIN [Wikipedia:Zonule_of_Zinn] synonym: "zonular fiber" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonule" RELATED [Wikipedia:Zonule_of_Zinn] synonym: "zonule of Zinn" EXACT [FMA:58838] -synonym: "zonules" EXACT PLURAL [ZFA:0005573] +synonym: "zonules" EXACT OMO:0003004 [ZFA:0005573] xref: FMA:58838 xref: SCTID:362524000 xref: Wikipedia:Zonule_of_Zinn @@ -116226,7 +116227,7 @@ synonym: "intermediate white layer of the superior colliculus" RELATED [BAMS:InW synonym: "lamina colliculi superioris v" EXACT LATIN [FMA:71113, FMA:TA] synonym: "lamina V of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer V of superior colliculus" EXACT [FMA:71113] -synonym: "strata album centrales" RELATED PLURAL [ZFA:0001351] +synonym: "strata album centrales" RELATED OMO:0003004 [ZFA:0001351] synonym: "stratum album centrale" RELATED [TAO:0001351] synonym: "stratum album intermediale of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "stratum medullare intermedium colliculi superioris" EXACT LATIN [FMA:71113, FMA:TA] @@ -116305,7 +116306,7 @@ def: "Deep white matter layer of superior collilculus that consists entirely of subset: vertebrate_core synonym: "deep white layer of the superior colliculus" RELATED [BAMS:DpWh, BAMS:dw] synonym: "deep white zone" RELATED [TAO:0000494] -synonym: "deep white zones" RELATED PLURAL [ZFA:0000494] +synonym: "deep white zones" RELATED OMO:0003004 [ZFA:0000494] synonym: "lamina colliculi superioris vii" EXACT LATIN [FMA:72416, FMA:TA] synonym: "lamina VII of superior colliculus" EXACT [Wikipedia:Superior_colliculus#Neural_circuit] synonym: "layer VII of superior colliculus" EXACT [FMA:72416] @@ -116334,7 +116335,7 @@ name: superficial layer of superior colliculus def: "The outermost layer of the superior colliculus." [http://orcid.org/0000-0002-6601-2165] synonym: "superficial gray and white zone" EXACT [ZFA:0000686] synonym: "superficial grey and white zone" RELATED [TAO:0000686] -synonym: "superficial grey and white zones" RELATED PLURAL [TAO:0000686] +synonym: "superficial grey and white zones" RELATED OMO:0003004 [TAO:0000686] synonym: "superior colliculus, superficial layer" RELATED [BAMS:SCS] xref: BM:MB-Tec-SCS xref: DHBA:12293 @@ -116636,7 +116637,7 @@ name: mental foramen def: "The mental foramen is one of two holes ('foramina') located on the anterior surface of the mandible. It permits passage of the mental nerve and vessels. The mental foramen descends slightly in edentulous individuals." [Wikipedia:Mental_foramen] synonym: "foramen mentale" RELATED LATIN [Wikipedia:Mental_foramen] synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen] -synonym: "mental foramina" EXACT PLURAL [OBOL:automatic] +synonym: "mental foramina" EXACT OMO:0003004 [OBOL:automatic] xref: AAO:0000298 xref: FMA:53171 xref: MESH:D000080383 @@ -117038,8 +117039,8 @@ subset: efo_slim subset: pheno_slim subset: uberon_slim synonym: "scapula bone" RELATED [BTO:0001218] -synonym: "scapulae" EXACT PLURAL [ZFA:0000583] -synonym: "scapulas" RELATED PLURAL [TAO:0000583] +synonym: "scapulae" EXACT OMO:0003004 [ZFA:0000583] +synonym: "scapulas" RELATED OMO:0003004 [TAO:0000583] synonym: "shoulder blade" NARROW [] xref: AAO:0000751 xref: BTO:0001218 @@ -117911,7 +117912,7 @@ alt_id: UBERON:0010140 def: "A duct or series of ducts that transports sperm from the gonad. In mammals this is from the seminiferous tubules through rete testis, vas efferentia, epididymis, vas deferens, ejeculatory duct to the urethra." [https://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "sperm duct" EXACT [ZFA:0001268] -synonym: "sperm ducts" EXACT PLURAL [TAO:0001268] +synonym: "sperm ducts" EXACT OMO:0003004 [TAO:0001268] xref: FMA:55678 xref: TAO:0001268 xref: ZFA:0001268 @@ -118359,7 +118360,7 @@ name: sexually immature organism def: "A multicellular organism that is at the juvenile stage." [OBOL:automatic] synonym: "juvenile" BROAD [] synonym: "juvenile organism" EXACT [BILA:0000076] -synonym: "juveniles" EXACT PLURAL [TAO:0002047] +synonym: "juveniles" EXACT OMO:0003004 [TAO:0002047] xref: BILA:0000076 xref: http://neurolex.org/wiki/Category\:Juvenile_organism xref: TAO:0002047 @@ -118374,7 +118375,7 @@ id: UBERON:0007023 name: adult organism def: "A multicellular organism that existence_ends_with a post-juvenile adult stage and existence_starts_with a post-juvenile adult stage." [OBOL:automatic] synonym: "adult" BROAD [] -synonym: "adults" EXACT PLURAL [TAO:0002046] +synonym: "adults" EXACT OMO:0003004 [TAO:0002046] xref: BILA:0000078 xref: galen:Adult xref: HAO:0000087 @@ -118512,14 +118513,14 @@ property_value: development_notes "In humans, it appears at the end of the fourt id: UBERON:0007106 name: chorionic villus def: "One of the minute vascular projections of the fetal chorion that combines with maternal uterine tissue to form the placenta." [BTO:0001161, Wikipedia:Chorionic_villi] -synonym: "chorionic villi" RELATED PLURAL [MESH:A16.254.403.473.200] +synonym: "chorionic villi" RELATED OMO:0003004 [MESH:A16.254.403.473.200] synonym: "chorionic villous" RELATED [Wikipedia:Chorionic_villi] synonym: "chorionic villus" RELATED [GAID:1300] synonym: "embryonic part of placenta" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "embryonic placenta" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "fetal part of placenta" RELATED [http://orcid.org/0000-0002-6601-2165] synonym: "fetal placenta" RELATED [http://orcid.org/0000-0002-6601-2165] -synonym: "placental villi" RELATED PLURAL [GAID:1300] +synonym: "placental villi" RELATED OMO:0003004 [GAID:1300] synonym: "placental villous" RELATED [] synonym: "placental villus" RELATED [GAID:1300] synonym: "villous chorion" RELATED [] @@ -118773,7 +118774,7 @@ synonym: "first arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "first pharyngeal pouch" RELATED [VHOG:0000970] synonym: "first visceral pouch" EXACT [XAO:0000102] synonym: "hyomandibular pouch" EXACT [] -synonym: "pharyngeal pouches 1" EXACT PLURAL [ZFA:0001128] +synonym: "pharyngeal pouches 1" EXACT OMO:0003004 [ZFA:0001128] synonym: "visceral pouch 1" EXACT [XAO:0000102] xref: AAO:0011114 xref: EFO:0003631 @@ -118811,7 +118812,7 @@ synonym: "2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061] synonym: "2nd arch pouch endoderm" EXACT [EHDAA2:0000058] synonym: "2nd branchial pouch" EXACT [] synonym: "2nd pharyngeal pouch endoderm" EXACT [VHOG:0000561] -synonym: "pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130] +synonym: "pharyngeal pouches 2" EXACT OMO:0003004 [ZFA:0001130] synonym: "second arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "second pharyngeal pouch" RELATED [VHOG:0000967] synonym: "second visceral pouch" EXACT [XAO:0000247] @@ -118853,7 +118854,7 @@ synonym: "3rd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000076] synonym: "3rd arch branchial pouch endoderm" EXACT [EHDAA2:0000077] synonym: "3rd branchial pouch" EXACT [] synonym: "3rd pharyngeal pouch endoderm" EXACT [VHOG:0001030] -synonym: "pharyngeal pouches 3" EXACT PLURAL [ZFA:0001131] +synonym: "pharyngeal pouches 3" EXACT OMO:0003004 [ZFA:0001131] synonym: "third arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "third pharyngeal pouch" RELATED [VHOG:0000966] synonym: "third visceral pouch" EXACT [XAO:0000251] @@ -118896,7 +118897,7 @@ synonym: "fourth arch pharyngeal pouch" EXACT [OBOL:automatic] synonym: "fourth branchial pouch" EXACT [] synonym: "fourth pharyngeal pouch" RELATED [VHOG:0000971] synonym: "fourth visceral pouch" EXACT [XAO:0000254] -synonym: "pharyngeal pouches 4" EXACT PLURAL [ZFA:0001134] +synonym: "pharyngeal pouches 4" EXACT OMO:0003004 [ZFA:0001134] synonym: "visceral pouch 4" EXACT [XAO:0000254] xref: AAO:0011117 xref: EFO:0003637 @@ -118933,7 +118934,7 @@ synonym: "5th visceral pouch" RELATED [VHOG:0001206] synonym: "fifth pharyngeal pouch" RELATED [VHOG:0001206] synonym: "fifth visceral pouch" EXACT [XAO:0000255] synonym: "fifth visceral pouch" RELATED [VHOG:0001206] -synonym: "pharyngeal pouches 5" EXACT PLURAL [ZFA:0001133] +synonym: "pharyngeal pouches 5" EXACT OMO:0003004 [ZFA:0001133] synonym: "visceral pouch 5" EXACT [XAO:0000255] xref: AAO:0011118 xref: EFO:0003636 @@ -118957,7 +118958,7 @@ subset: efo_slim subset: vertebrate_core synonym: "6th arch branchial pouch" EXACT [] synonym: "6th branchial pouch" EXACT [] -synonym: "pharyngeal pouches 6" EXACT PLURAL [ZFA:0001132] +synonym: "pharyngeal pouches 6" EXACT OMO:0003004 [ZFA:0001132] synonym: "sixth visceral pouch" EXACT [XAO:0000265] synonym: "visceral pouch 6" EXACT [XAO:0000265] xref: AAO:0011119 @@ -119009,7 +119010,7 @@ name: trunk ganglion def: "Ganglion which is located in the trunk." [ZFIN:curator] subset: efo_slim synonym: "body ganglion" EXACT [MAT:0000344] -synonym: "trunk ganglia" EXACT PLURAL [ZFA:0001573] +synonym: "trunk ganglia" EXACT OMO:0003004 [ZFA:0001573] xref: EFO:0000901 xref: MAT:0000344 xref: MIAA:0000344 @@ -119186,7 +119187,7 @@ def: "A valve leafleft that is part of a mitral valve." [http://orcid.org/0000-0 subset: pheno_slim synonym: "leaflet of mitral valve" EXACT [FMA:7241] synonym: "mitral valve leaflet" EXACT [FMA:7241] -synonym: "mitral valve leaflets" RELATED PLURAL [VHOG:0000822] +synonym: "mitral valve leaflets" RELATED OMO:0003004 [VHOG:0000822] synonym: "mitral valvular leaflet" EXACT [FMA:7241] xref: EMAPA:18628 xref: FMA:7241 @@ -119678,7 +119679,7 @@ id: UBERON:0007193 name: orbital gyrus def: "The inferior or orbital surface of the frontal lobe is concave, and rests on the orbital plate of the frontal bone. It is divided into four orbital gyri by a well-marked H-shaped orbital sulcus. These are named, from their position, the medial, anterior, lateral, and posterior orbital gyri. The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract; the portion medial to this is named the straight gyrus, and is continuous with the superior frontal gyrus on the medial surface." [Wikipedia:Orbital_gyri] synonym: "gyrus orbitales" RELATED LATIN [Wikipedia:Orbital_gyri] -synonym: "orbital gyri" EXACT PLURAL [Wikipedia:Orbital_gyri] +synonym: "orbital gyri" EXACT OMO:0003004 [Wikipedia:Orbital_gyri] xref: BAMS:OrG xref: FMA:256194 xref: neuronames:91 @@ -119805,7 +119806,7 @@ id: UBERON:0007215 name: trabecula cranii def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [ZFIN:curator] comment: A paired cartilage element appearing in the preotic section of the head at the border between the brain and visceral structures (The Trabecula cranii: development and homology of an enigmatic vertebrate head structure - Cerny et al 2006) -synonym: "trabeculae cranii" EXACT PLURAL [ZFA:0001507] +synonym: "trabeculae cranii" EXACT OMO:0003004 [ZFA:0001507] xref: TAO:0001507 xref: ZFA:0001507 is_a: UBERON:0003932 ! cartilage element of chondrocranium @@ -120499,9 +120500,9 @@ subset: vertebrate_core synonym: "AC" RELATED [TAO:0000619] synonym: "anterior crista" RELATED [TAO:0000619] synonym: "anterior crista ampullaris" EXACT [ZFA:0000619] -synonym: "anterior cristae" EXACT PLURAL [ZFA:0000619] +synonym: "anterior cristae" EXACT OMO:0003004 [ZFA:0000619] synonym: "anterior semicircular canal sensory patch" EXACT [ZFA:0000619] -synonym: "anterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000619] +synonym: "anterior semicircular canal sensory patches" EXACT OMO:0003004 [ZFA:0000619] synonym: "rostral crista" EXACT [ZFA:0000619] synonym: "sensory patches" RELATED [TAO:0000619] xref: FMA:75610 @@ -120524,9 +120525,9 @@ synonym: "caudal crista" EXACT [ZFA:0000566] synonym: "PC" RELATED [TAO:0000566] synonym: "posterior crista" RELATED [TAO:0000566] synonym: "posterior crista ampullaris" EXACT [ZFA:0000566] -synonym: "posterior cristae" EXACT PLURAL [ZFA:0000566] +synonym: "posterior cristae" EXACT OMO:0003004 [ZFA:0000566] synonym: "posterior semicircular canal sensory patch" EXACT [ZFA:0000566] -synonym: "posterior semicircular canal sensory patches" EXACT PLURAL [ZFA:0000566] +synonym: "posterior semicircular canal sensory patches" EXACT OMO:0003004 [ZFA:0000566] synonym: "sensory patches" RELATED [TAO:0000566] xref: FMA:75611 xref: TAO:0000566 @@ -120544,9 +120545,9 @@ def: "A crista ampullaris neuroepithelium that is part of a lateral semicircular subset: vertebrate_core synonym: "lateral crista" RELATED [TAO:0000166] synonym: "lateral crista ampullaris" EXACT [ZFA:0000166] -synonym: "lateral cristae" EXACT PLURAL [ZFA:0000166] +synonym: "lateral cristae" EXACT OMO:0003004 [ZFA:0000166] synonym: "lateral semicircular canal sensory patch" EXACT [ZFA:0000166] -synonym: "lateral semicircular canal sensory patches" EXACT PLURAL [ZFA:0000166] +synonym: "lateral semicircular canal sensory patches" EXACT OMO:0003004 [ZFA:0000166] synonym: "LC" RELATED [TAO:0000166] synonym: "sensory patches" RELATED [TAO:0000166] xref: FMA:75612 @@ -120637,7 +120638,7 @@ id: UBERON:0007282 name: presumptive segmental plate def: "A presumptive structure that has the potential to develop into a presomitic mesoderm." [OBOL:automatic] subset: efo_slim -synonym: "presumptive segmental plates" RELATED PLURAL [ZFA:0000053] +synonym: "presumptive segmental plates" RELATED OMO:0003004 [ZFA:0000053] xref: EFO:0003421 xref: TAO:0000053 xref: ZFA:0000053 @@ -120834,7 +120835,7 @@ id: UBERON:0007299 name: choroid plexus of tectal ventricle def: "A choroid plexus that is part of a cerebral aqueduct." [OBOL:automatic] synonym: "choroid plexus tectal ventricle" EXACT [ZFA:0001445] -synonym: "choroid plexus tectal ventricles" RELATED PLURAL [ZFA:0001445] +synonym: "choroid plexus tectal ventricles" RELATED OMO:0003004 [ZFA:0001445] xref: TAO:0001445 xref: ZFA:0001445 intersection_of: UBERON:0001886 ! choroid plexus @@ -120918,7 +120919,7 @@ relationship: part_of UBERON:0004739 {is_inferred="true", source="https://github id: UBERON:0007308 name: pronephric distal early tubule def: "A distal early tubule that is part of a pronephros." [OBOL:automatic] -synonym: "pronephric distal early tubules" RELATED PLURAL [ZFA:0001622] +synonym: "pronephric distal early tubules" RELATED OMO:0003004 [ZFA:0001622] xref: TAO:0002236 xref: ZFA:0001622 intersection_of: UBERON:0006337 ! distal early tubule @@ -121505,7 +121506,7 @@ id: UBERON:0007380 name: dermal scale def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:curator, Wikipedia:Scale_(zoology)#Fish_scales] synonym: "fish scale" RELATED [Wikipedia:Scale_(zoology)#Fish_scales] -synonym: "scales" EXACT PLURAL [ZFA:0000277] +synonym: "scales" EXACT OMO:0003004 [ZFA:0000277] xref: AAO:0010056 xref: TAO:0000277 xref: VSAO:0000048 @@ -121648,7 +121649,7 @@ id: UBERON:0007414 name: nucleus of midbrain tegmentum alt_id: UBERON:0012277 def: "A nucleus of brain that spans a midbrain tegmentum." [OBOL:automatic] -synonym: "tegmental nuclei" EXACT PLURAL [] +synonym: "tegmental nuclei" EXACT OMO:0003004 [] synonym: "tegmental nucleus" EXACT [ZFA:0005577] xref: FMA:258768 xref: ZFA:0005577 @@ -121903,7 +121904,7 @@ id: UBERON:0007567 name: regenerating anatomical structure def: "An anatomical structure that is undergoing regeneration." [http://orcid.org/0000-0002-6601-2165] synonym: "regenerating tissue" RELATED [ZFA:0005147] -synonym: "regenerating tissues" RELATED PLURAL [ZFA:0005147] +synonym: "regenerating tissues" RELATED OMO:0003004 [ZFA:0005147] synonym: "regenerative tissue" RELATED [] xref: AEO:0000200 xref: EHDAA2:0003233 @@ -121927,7 +121928,7 @@ is_a: UBERON:0000483 {source="AEO"} ! epithelium [Term] id: UBERON:0007574 name: apical epidermal cap -synonym: "apical epidermal caps" EXACT PLURAL [ZFA:0005148] +synonym: "apical epidermal caps" EXACT OMO:0003004 [ZFA:0005148] synonym: "apical epithelial cap" EXACT [Wikipedia:Blastema] xref: TAO:0005148 xref: ZFA:0005148 @@ -123886,7 +123887,7 @@ name: minor alar cartilage def: "The part which forms the lateral wall is curved to correspond with the ala of the nose; it is oval and flattened, narrow behind, where it is connected with the frontal process of the maxilla by a tough fibrous membrane, in which are found three or four small cartilaginous plates, the lesser alar cartilages." [Wikipedia:Lesser_alar_cartilages] synonym: "cartilago alaris minor" RELATED LATIN [Wikipedia:Lesser_alar_cartilages] synonym: "lesser alar cartilage" EXACT [FMA:59507] -synonym: "lesser alar cartilages" RELATED PLURAL [] +synonym: "lesser alar cartilages" RELATED OMO:0003004 [] xref: FMA:59507 xref: SCTID:368118006 xref: Wikipedia:Lesser_alar_cartilages @@ -124206,7 +124207,7 @@ property_value: taxon_notes "Found in both avian and non-avian theropods includi id: UBERON:0007842 name: membrane bone def: "Bone element that arises as a result of intramembranous ossification." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/267, VSAO:0000023] -synonym: "membrane bones" RELATED PLURAL [ZFA:0001636] +synonym: "membrane bones" RELATED OMO:0003004 [ZFA:0001636] xref: AEO:0000085 xref: EHDAA2:0003085 xref: TAO:0001645 @@ -124629,8 +124630,8 @@ name: scute def: "A bony external plate or scale, as on the shell of a turtle, the skin of crocodilians, the feet of some birds. Scutes are similar to scales and serve the same function. Unlike the scales of fish and snakes, which are formed from the epidermis, scutes are formed in the lower vascular layer of the skin and the epidermal element is only the top surface. Forming in the living dermis, the scutes produce a horny outer layer, that is superficially similar to that of scales. Scutes will usually not overlap as snake scales (but see the pangolin). The outer keratin layer is shed piecemeal, and not in one continuous layer of skin as seen in snakes or lizards. The dermal base may contain bone and produce dermal armour. Scutes with a bony base are properly called osteoderms. Dermal scutes are also found in the feet of birds and tails of some mammals, and are believed to be the primitive form of dermal armour in reptiles. The term is also used to describe the heavy armour of the armadillo and the extinct glyptodon, and is occasionally used as an alternative to scales in describing snakes or certain fishes, such as sturgeons[WP]." [Wikipedia:Scute] synonym: "osteoderm" RELATED [PHENOSCAPE:ad, Wikipedia:Scute] synonym: "osteoscute" RELATED [PHENOSCAPE:ad] -synonym: "scuta" EXACT PLURAL [Wikipedia:Scute] -synonym: "scutae" EXACT PLURAL [Wikipedia:Scute] +synonym: "scuta" EXACT OMO:0003004 [Wikipedia:Scute] +synonym: "scutae" EXACT OMO:0003004 [Wikipedia:Scute] synonym: "scutum" EXACT [Wikipedia:Scute] xref: SCTID:17148007 xref: Wikipedia:Scute @@ -124771,7 +124772,7 @@ relationship: part_of UBERON:0001007 ! digestive system id: UBERON:0008247 name: tube foot def: "One of the numerous external, fluid-filled muscular tubes of echinoderms, such as the starfish or sea urchin, serving as organs of locomotion, food handling, and respiration[BTO]. Tube feet consist of two parts: ampulla and podia. Ampulla contain both circular muscles and longitudinal muscle, whereas the podia contain the latter only. Thus the podia use suction to attach to the substratum[WP]." [BTO:0001919, Wikipedia:Tube_feet] -synonym: "tube feet" RELATED PLURAL [Wikipedia:Tube_feet] +synonym: "tube feet" RELATED OMO:0003004 [Wikipedia:Tube_feet] xref: BTO:0001919 xref: Wikipedia:Tube_feet is_a: UBERON:0000026 {source="cjm"} ! appendage @@ -124929,7 +124930,7 @@ property_value: editor_note "May be reclassified depending on CARO treatment of id: UBERON:0008261 name: pedicellaria def: "A small wrench or claw-shaped structure commonly found on Echinoderms, particularly in sea stars (class Asteroidea) and sea urchins (class Echinoidea). Pedicellariae are poorly understood but in some taxa, they are thought to keep the body surface clear of algae, encrusting organisms, and other debris in conjunction with the ciliated epidermis present in all echinoderms. Pedicellariae in some taxa, such as the deep-sea Brisingida, and the Antarctic Labidiaster are known to function in food capture. In forcipulate sea stars, each pedicellaria is typically composed three forceps-like valves. Other asteroids can have pedicellariae composed of only two components. In some asteroid sea stars pedicellariae are present around the base of a spine or on the surface of the animal's body. In other sea stars, they are present in pits on the abactinal, marginal, or actinal surface; oftentimes on the adambulacral plate adjacent to the tube foot furrow." [Wikipedia:Pedicellaria] -synonym: "pedicellariae" EXACT PLURAL [Wikipedia:Pedicellaria] +synonym: "pedicellariae" EXACT OMO:0003004 [Wikipedia:Pedicellaria] xref: Wikipedia:Pedicellaria is_a: UBERON:0000026 {source="cjm"} ! appendage relationship: only_in_taxon NCBITaxon:7586 ! Echinodermata @@ -127102,7 +127103,7 @@ id: UBERON:0008777 name: hypaxial musculature def: "Musculature that is derived from the hypaxial myotome region, trunk muscles that lie ventral to the horizontal septum of the vertebrae. Hypaxial muscles include some vertebral muscles, the diaphragm, the abdominal muscles, and all limb muscles." [Wikipedia:Epaxial_and_Hypaxial_muscles] synonym: "hypaxial muscle" RELATED [XAO:0003228] -synonym: "hypaxial muscles" EXACT PLURAL [] +synonym: "hypaxial muscles" EXACT OMO:0003004 [] xref: AAO:0000228 xref: EMAPA:37852 {source="MA:th"} xref: Wikipedia:Epaxial_and_Hypaxial_muscles @@ -127121,7 +127122,7 @@ name: epaxial musculature def: "Musculature that is derived from the epaxial myotome region, ventral to the horizontal septum of the vertebrae. Epaxial muscles include other (dorsal) muscles associated with the vertebrae, ribs, and base of the skull." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Epaxial_and_hypaxial_muscles] subset: pheno_slim synonym: "epaxial muscle" RELATED [XAO:0003229] -synonym: "epaxial muscles" EXACT PLURAL [] +synonym: "epaxial muscles" EXACT OMO:0003004 [] xref: AAO:0000142 xref: EMAPA:37851 {source="MA:th"} xref: XAO:0003229 @@ -127278,7 +127279,7 @@ id: UBERON:0008790 name: rugal fold def: "A ridge or fold, such as the rugae of the stomach, which are large folds in the mucous membrane of that organ." [http://medical-dictionary.thefreedictionary.com/Rugal+folds, Wikipedia:Rugae] synonym: "ruga" EXACT [Wikipedia:Rugae] -synonym: "rugae" RELATED PLURAL [Wikipedia:Rugae] +synonym: "rugae" RELATED OMO:0003004 [Wikipedia:Rugae] xref: Wikipedia:Rugae is_a: UBERON:0000064 ! organ part relationship: has_quality PATO:0001359 ! rugose @@ -127291,7 +127292,7 @@ name: rugal fold of stomach def: "A rugal fold that is part of a stomach." [OBOL:automatic] synonym: "gastric ruga" EXACT [FMA:15106] synonym: "gastric ruga(e)" RELATED [FMA:15106] -synonym: "gastric rugae" EXACT PLURAL [FMA:15106] +synonym: "gastric rugae" EXACT OMO:0003004 [FMA:15106] synonym: "ruga of stomach" EXACT [FMA:15106] xref: FMA:15106 xref: NCIT:C32660 @@ -127318,21 +127319,21 @@ id: UBERON:0008799 name: transverse palatine fold def: "Any of the the series of transverse folds (ridges) of the mucosa located on the anterior third part of the secondary (hard) palate of most mammalian species." [MP:0009652] subset: pheno_slim -synonym: "hard palate palatal rugae" EXACT PLURAL [EMAPA:35638] +synonym: "hard palate palatal rugae" EXACT OMO:0003004 [EMAPA:35638] synonym: "hard palate ruga" EXACT [] -synonym: "impressiones rugales" EXACT PLURAL [https://orcid.org/0000-0002-6601-2165] +synonym: "impressiones rugales" EXACT OMO:0003004 [https://orcid.org/0000-0002-6601-2165] synonym: "palatal rugae" EXACT [MP:0009652] synonym: "palatine fold" EXACT [FMA:75652] -synonym: "palatine rugae" EXACT PLURAL [FMA:75652] +synonym: "palatine rugae" EXACT OMO:0003004 [FMA:75652] synonym: "plica palatina transversa" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] synonym: "plicae palatinae transversae" EXACT LATIN [FMA:75652, FMA:TA] synonym: "ruga of palate" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "ruga palatina" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] -synonym: "rugae of palate" EXACT PLURAL [https://orcid.org/0000-0002-6601-2165] -synonym: "rugae palatinae" EXACT PLURAL [FMA:75652, FMA:TA] +synonym: "rugae of palate" EXACT OMO:0003004 [https://orcid.org/0000-0002-6601-2165] +synonym: "rugae palatinae" EXACT OMO:0003004 [FMA:75652, FMA:TA] synonym: "set of transverse palatine folds" RELATED [FMA:75652] -synonym: "transverse palatine folds" EXACT PLURAL [FMA:75652] -synonym: "transverse palatine folds set" EXACT PLURAL [FMA:75652] +synonym: "transverse palatine folds" EXACT OMO:0003004 [FMA:75652] +synonym: "transverse palatine folds set" EXACT OMO:0003004 [FMA:75652] synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse-palatine-fold.html] xref: EMAPA:35638 xref: FMA:75652 @@ -127520,7 +127521,7 @@ id: UBERON:0008812 name: hemipenis def: "One of a pair of intromittent organs of male squamates. Hemipenes are usually held inverted, within the body, and are everted for reproduction via erectile tissue like that in the human penis. Only one is used at a time, and some evidence indicates males alternate use between copulations. The hemipenis itself has a variety of shapes, depending on species. Often the hemipenis bears spines or hooks, in order to anchor the male within the female. Some species even have forked hemipenes (each hemipenis has two tips). Due to being everted and inverted, hemipenes do not have a completely enclosed channel for the conduction of sperm, but rather a seminal groove which seals as the erectile tissue expands." [Wikipedia:Hemipenis] subset: organ_slim -synonym: "hemipenes" RELATED PLURAL [Wikipedia:Hemipenis] +synonym: "hemipenes" RELATED OMO:0003004 [Wikipedia:Hemipenis] xref: SCTID:27265006 xref: Wikipedia:Hemipenis is_a: UBERON:0008811 {source="Wikipedia"} ! intromittent organ @@ -127909,7 +127910,7 @@ def: "An autopod pad that is in the metacarpal region." [https://orcid.org/0000- synonym: "hind foot pad" RELATED [] synonym: "metacarpal foot pad" RELATED [] synonym: "metacarpal pad" RELATED [] -synonym: "palmar pads" RELATED PLURAL [EMAPA:18489] +synonym: "palmar pads" RELATED OMO:0003004 [EMAPA:18489] xref: EMAPA:18489 intersection_of: UBERON:0008838 ! metapodial pad intersection_of: part_of UBERON:0004453 ! metacarpus region @@ -127924,7 +127925,7 @@ def: "An autopod pad that is in the metatarsal region." [https://orcid.org/0000- synonym: "fore foot pad" RELATED [] synonym: "metatarsal foot pad" RELATED [] synonym: "metatarsal pad" RELATED [] -synonym: "plantar pads" RELATED PLURAL [EMAPA:18507] +synonym: "plantar pads" RELATED OMO:0003004 [EMAPA:18507] xref: EMAPA:18507 intersection_of: UBERON:0008838 ! metapodial pad intersection_of: part_of UBERON:0000983 ! metatarsus region @@ -128320,7 +128321,7 @@ def: "The largest lung subunit in which all airways participate in gas exchange, subset: pheno_slim synonym: "acinus pulmonaris" EXACT LATIN [FMA:7313, FMA:TA] synonym: "arbor alveolaris" EXACT LATIN [FMA:7313, FMA:TA] -synonym: "pulmonary acini" EXACT PLURAL [PMID:37025383] +synonym: "pulmonary acini" EXACT OMO:0003004 [PMID:37025383] xref: EMAPA:37941 {source="MA:th"} xref: FMA:7313 xref: NCIT:C33426 @@ -128566,7 +128567,7 @@ def: "A primordium or bud that develops into a gill." [http://orcid.org/0000-000 synonym: "external gill anlage" RELATED [XAO:0000448] synonym: "gill primordium" EXACT [XAO:0000448] synonym: "internal gill bud" EXACT [ZFA:0001107] -synonym: "internal gill buds" RELATED PLURAL [ZFA:0001107] +synonym: "internal gill buds" RELATED OMO:0003004 [ZFA:0001107] xref: TAO:0001107 xref: XAO:0000448 xref: ZFA:0001107 @@ -128615,9 +128616,9 @@ name: post-hyoid pharyngeal arch def: "A pharyngeal arch that is posterior to the hyoid arch. i.e. any pharyngeal arch with a number 3 or higher." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim synonym: "branchial arch" EXACT [ZFA:0001613] -synonym: "branchial arches" EXACT PLURAL [ZFA:0001613] +synonym: "branchial arches" EXACT OMO:0003004 [ZFA:0001613] synonym: "branchial bar" EXACT [ZFA:0001613] -synonym: "branchial bars" EXACT PLURAL [ZFA:0001613] +synonym: "branchial bars" EXACT OMO:0003004 [ZFA:0001613] synonym: "gill arch" EXACT [ZFA:0001613] synonym: "gill arches 1-5" EXACT [ZFA:0001613] synonym: "gill bar" RELATED [https://orcid.org/0000-0002-6601-2165] @@ -128639,7 +128640,7 @@ id: UBERON:0008897 name: fin def: "An external projection of an aquatic animal as a fish used in propelling or guiding the body[BTO]." [BTO:0004649, Wikipedia:Fin] subset: efo_slim -synonym: "fins" RELATED PLURAL [ZFA:0000108] +synonym: "fins" RELATED OMO:0003004 [ZFA:0000108] xref: AAO:0010374 xref: AEO:0001004 xref: BTO:0004649 @@ -128666,9 +128667,9 @@ property_value: taxon_notes "This class groups together various structures that id: UBERON:0008902 name: lateral recess of third ventricle def: "Lateral protrusion of the third ventricle." [ZFIN:curator] -synonym: "lateral recess" BROAD PLURAL [ZFA:0000231] +synonym: "lateral recess" BROAD OMO:0003004 [ZFA:0000231] synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-27] -synonym: "lateral recesses" RELATED PLURAL [ZFA:0000231] +synonym: "lateral recesses" RELATED OMO:0003004 [ZFA:0000231] xref: TAO:0000231 xref: ZFA:0000231 is_a: UBERON:0000464 {source="ZFA"} ! anatomical space @@ -128682,7 +128683,7 @@ subset: efo_slim synonym: "lateral line neuromast" EXACT [ZFA:0000243] synonym: "lateral line organ" BROAD [ZFA:0000243] synonym: "neuromast organ" EXACT [PHENOSCAPE:wd] -synonym: "neuromasts" EXACT PLURAL [ZFA:0000243] +synonym: "neuromasts" EXACT OMO:0003004 [ZFA:0000243] xref: AAO:0001004 xref: BTO:0006219 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} xref: EFO:0003513 @@ -128705,7 +128706,7 @@ property_value: external_definition "Volcano-shaped lateral line sensory organ l id: UBERON:0008906 name: lateral line nerve def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] -synonym: "lateral line nerves" EXACT PLURAL [ZFA:0001479] +synonym: "lateral line nerves" EXACT OMO:0003004 [ZFA:0001479] xref: AAO:0010077 xref: TAO:0001479 xref: ZFA:0001479 @@ -128722,7 +128723,7 @@ property_value: external_definition "Any of the sensory nerves that innervate me id: UBERON:0008907 name: dermal bone def: "Skeletal element that forms superficially in the organism, usually in association with the ectoderm[VSAO]." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, https://github.com/obophenotype/uberon/issues/267, VSAO:0000130] -synonym: "dermal bones" RELATED PLURAL [ZFA:0001590] +synonym: "dermal bones" RELATED OMO:0003004 [ZFA:0001590] xref: AAO:0010769 xref: TAO:0001590 xref: VSAO:0000130 @@ -128742,7 +128743,7 @@ id: UBERON:0008909 name: perichordal bone def: "Bone element that is adjacent to the notochord." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000307] synonym: "perichordal bone" RELATED [ZFA:0001629] -synonym: "perichordal bones" EXACT PLURAL [ZFA:0001629] +synonym: "perichordal bones" EXACT OMO:0003004 [ZFA:0001629] xref: AAO:0010777 xref: TAO:0001639 xref: VSAO:0000307 @@ -128769,7 +128770,7 @@ name: perichondral bone def: "Bone element that is located on the surface of a cartilage element." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, VSAO:0000308] comment: include the subtyping under 'replacement bone', for consistency with ZFA, but VSAO does not include this intermediate class synonym: "perichondral bone" RELATED [ZFA:0001630] -synonym: "perichondral bones" EXACT PLURAL [ZFA:0001630] +synonym: "perichondral bones" EXACT OMO:0003004 [ZFA:0001630] xref: AAO:0010779 xref: TAO:0001638 xref: VSAO:0000308 @@ -128825,7 +128826,7 @@ id: UBERON:0008918 name: ampulla of Lorenzini def: "The ampullae of Lorenzini are special sensing organs called electroreceptors, forming a network of jelly-filled pores. Each ampulla consists of a canal opening to the surface by a pore in the skin and ending blindly in a cluster of small pockets full of special jelly. The ampullae are mostly clustered into groups inside the body, each cluster having ampullae connecting with different parts of the skin, but preserving a left-right symmetry. The canal lengths vary from animal to animal, but the distribution of the pores is generally specific to each species. The ampullae pores are plainly visible as dark spots in the skin. They provide fish with a sixth sense capable of detecting electromagnetic fields as well as temperature gradients[WP]." [Wikipedia:Ampullae_of_Lorenzini] subset: organ_slim -synonym: "ampullae of Lorenzini" EXACT PLURAL [Wikipedia:Ampullae_of_Lorenzini] +synonym: "ampullae of Lorenzini" EXACT OMO:0003004 [Wikipedia:Ampullae_of_Lorenzini] xref: Wikipedia:Ampullae_of_Lorenzini is_a: UBERON:0003103 ! compound organ relationship: capable_of GO:0050964 ! detection of electrical stimulus involved in electroception @@ -129295,7 +129296,7 @@ relationship: part_of UBERON:0001474 {source="Wikipedia:Evolution_of_cetaceans"} id: UBERON:0008959 name: auditory bulla def: "A hollow bony structure on the ventral, posterior portion of the skull of placental mammals that encloses parts of the middle and inner ear. In most species, it is formed by the tympanic part of the temporal bone." [Wikipedia:Auditory_bulla] -synonym: "auditory bullae" RELATED PLURAL [] +synonym: "auditory bullae" RELATED OMO:0003004 [] synonym: "bulla" BROAD [] synonym: "bulla tympanica" RELATED LATIN [https://orcid.org/0000-0002-6601-2165] synonym: "sigmoid process" NARROW [] @@ -129330,7 +129331,7 @@ name: parabronchus def: "Tertiary bronchus in the avian lung." [http://medical-dictionary.thefreedictionary.com/parabronchi] synonym: "neopulmonic parabronchus" NARROW [] synonym: "paleopulmonic parabronchus" NARROW [] -synonym: "parabronchi" RELATED PLURAL [] +synonym: "parabronchi" RELATED OMO:0003004 [] is_a: UBERON:0002184 {notes="tertiary", source="ISBN:0073040584"} ! segmental bronchus relationship: connected_to UBERON:0009072 ! ventrobronchus relationship: connected_to UBERON:0009073 ! dorsobronchus @@ -129612,7 +129613,7 @@ id: UBERON:0008993 name: habenular nucleus def: "Either of the two neural nuclei within the habenula." [http://orcid.org/0000-0002-6601-2165] synonym: "ganglion habenulae" RELATED [BTO:0003685] -synonym: "habenular nuclei" RELATED PLURAL [DHBA:HN] +synonym: "habenular nuclei" RELATED OMO:0003004 [DHBA:HN] synonym: "nucleus habenulae" RELATED [BTO:0003685] xref: BAMS:N.Hb xref: BTO:0003685 @@ -129755,7 +129756,7 @@ name: superficial inguinal lymph node def: "A group of 12-20 lymph nodes that lie in the subcutaneous tissue below the inguinal ligament and along the terminal part of the great saphenous vein; they drain the skin and subcutaneous tissue of the lower abdominal wall, perineum, buttocks, external genitalia, and lower limbs." [BTO:0004549] synonym: "lymph node of Cloquet" EXACT [FMA:5036] synonym: "lymph node of Rosenmuller" EXACT [FMA:5036] -synonym: "nodi lymphatici inguinales superficiali" RELATED PLURAL [] +synonym: "nodi lymphatici inguinales superficiali" RELATED OMO:0003004 [] synonym: "nodus lymphaticus inguinalis superficialis" EXACT LATIN [FMA:5036] synonym: "superficial inguinal node" EXACT [FMA:5036] xref: BTO:0004549 @@ -129909,7 +129910,7 @@ id: UBERON:0009027 name: vesical artery def: "An artery that supplies blood to the urinary bladder." [http://orcid.org/0000-0002-6601-2165] synonym: "arteria vesicali" EXACT LATIN [] -synonym: "vesical arteries" EXACT PLURAL [] +synonym: "vesical arteries" EXACT OMO:0003004 [] xref: EMAPA:37131 {source="MA:th"} xref: MA:0002078 xref: SCTID:244307000 @@ -130195,7 +130196,7 @@ name: faveolus def: "A bellows-shaped respiratory unit extending from the outer wall of the lung into a central air space." [PMID:12869615] comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit structure of the reptilian parenchymal, which are analogous to mammalian alveoli, but are up to 1,000 times larger than alveoli of similar sized mammals[PMID:12625309] synonym: "edicula" RELATED SENSU [PMID:12625309] -synonym: "faveoli" RELATED PLURAL [] +synonym: "faveoli" RELATED OMO:0003004 [] synonym: "lung faveolus" EXACT [] is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0002048 ! lung @@ -130276,7 +130277,7 @@ relationship: in_lateral_side_of UBERON:0001004 {source="ISBN:0073040584"} ! res id: UBERON:0009071 name: mesobronchus subset: organ_slim -synonym: "mesobronchi" RELATED PLURAL [] +synonym: "mesobronchi" RELATED OMO:0003004 [] is_a: UBERON:0002182 {source="ISBN:0073040584"} ! main bronchus relationship: connected_to UBERON:0009060 ! air sac relationship: only_in_taxon NCBITaxon:8782 ! Aves @@ -130286,7 +130287,7 @@ relationship: part_of UBERON:0002048 ! lung id: UBERON:0009072 name: ventrobronchus subset: organ_slim -synonym: "ventrobronchi" RELATED PLURAL [] +synonym: "ventrobronchi" RELATED OMO:0003004 [] is_a: UBERON:0002185 ! bronchus relationship: connected_to UBERON:0008961 ! parabronchus relationship: only_in_taxon NCBITaxon:8782 ! Aves @@ -130295,7 +130296,7 @@ relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0009073 name: dorsobronchus -synonym: "dorsobronchi" RELATED PLURAL [] +synonym: "dorsobronchi" RELATED OMO:0003004 [] is_a: UBERON:0002183 {notes="secondary"} ! lobar bronchus relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0002048 ! lung @@ -130388,7 +130389,7 @@ property_value: external_ontology_notes "This class was created in order to alig id: UBERON:0009095 name: tip of renal papilla synonym: "papillary tip" EXACT [KUPO:0001009] -synonym: "papillary tips" EXACT PLURAL [KUPO:0001009] +synonym: "papillary tips" EXACT OMO:0003004 [KUPO:0001009] xref: KUPO:0001009 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla @@ -130554,7 +130555,7 @@ id: UBERON:0009120 name: gill filament def: "Portion of tissue that projects outward from the gill and is a thread-like, soft, red respiratory and excretory structure." [http://www.briancoad.com/Dictionary/G.htm, ZFIN:ZDB-PUB-961014-576] subset: efo_slim -synonym: "gill filaments" EXACT PLURAL [ZFA:0000667] +synonym: "gill filaments" EXACT OMO:0003004 [ZFA:0000667] xref: BTO:0002150 xref: EFO:0003554 xref: TAO:0000667 @@ -130640,9 +130641,9 @@ def: "Caudalmost epibranchial placode. Associated with 3rd branchial cleft." [NC comment: Taxonomic equivalence to EHDAA2 class made on basis of shared development: Gives rise to inferior vagus ganglion. Note that ZFA has 4 vagal placodes synonym: "epibranchial placode 3" EXACT [EHDAA2:0004208] synonym: "nodose placode" EXACT [XAO:0004213] -synonym: "nodose placodes" EXACT PLURAL [XAO:0004213] +synonym: "nodose placodes" EXACT OMO:0003004 [XAO:0004213] synonym: "vagal epibranchial placode" EXACT [XAO:0004213] -synonym: "vagal epibranchial placodes" EXACT PLURAL [XAO:0004213] +synonym: "vagal epibranchial placodes" EXACT OMO:0003004 [XAO:0004213] synonym: "vagal placode" RELATED [ISBN:0471888893] synonym: "vagal X placode" RELATED [ISBN:0471888893] xref: EHDAA2:0004208 @@ -130654,7 +130655,7 @@ id: UBERON:0009127 name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest -synonym: "epibranchial ganglia" EXACT PLURAL [ZFA:0001555] +synonym: "epibranchial ganglia" EXACT OMO:0003004 [ZFA:0001555] xref: BTO:0006250 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} xref: TAO:0001555 xref: ZFA:0001555 @@ -130667,7 +130668,7 @@ relationship: develops_from UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibra id: UBERON:0009128 name: lateral line placode def: "An ectodermal placode that will develop into the components of the lateral line system." [http://orcid.org/0000-0002-6601-2165] -synonym: "lateral line placodes" RELATED PLURAL [XAO:0000440] +synonym: "lateral line placodes" RELATED OMO:0003004 [XAO:0000440] xref: AAO:0010718 xref: XAO:0000440 is_a: UBERON:0003067 {source="ISBN:0471888893"} ! dorsolateral placode @@ -130740,7 +130741,7 @@ name: pleuroperitoneal membrane alt_id: UBERON:0009146 def: "A fold of tissue which extends into the peritoneal cavity of the developing embryo and participates in the separation of the pleural and peritoneal cavities." [http://medical-dictionary.thefreedictionary.com/pleuroperitoneal+membrane, Wikipedia:Pleuroperitoneal] synonym: "pleuroperitoneal fold" EXACT [VHOG:0000757] -synonym: "pleuroperitoneal membranes" EXACT PLURAL [EHDAA2:0001483] +synonym: "pleuroperitoneal membranes" EXACT OMO:0003004 [EHDAA2:0001483] xref: EHDAA2:0001483 xref: EMAPA:17709 xref: NCIT:C34256 @@ -131230,7 +131231,7 @@ id: UBERON:0009473 name: parapodium def: "Either of a pair of fleshy lateral processes borne by most segments of a polychaete worm." [http://www.merriam-webster.com/dictionary/parapodium?show=0&t=1314575672, Wikipedia:Parapodium] synonym: "paradpod" EXACT [] -synonym: "paradpodia" RELATED PLURAL [] +synonym: "paradpodia" RELATED OMO:0003004 [] synonym: "polychaete paradpodium" EXACT [] xref: Wikipedia:Parapodium is_a: UBERON:0000026 {source="cjm"} ! appendage @@ -132315,7 +132316,7 @@ intersection_of: part_of UBERON:0002415 ! tail id: UBERON:0009622 name: pronephric proximal straight tubule def: "A proximal straight tubule that is part of a pronephros." [ZFIN:ZDB-PUB-071029-9] -synonym: "proximal straight tubules" RELATED PLURAL [TAO:0002239] +synonym: "proximal straight tubules" RELATED OMO:0003004 [TAO:0002239] xref: TAO:0002239 xref: ZFA:0001621 intersection_of: UBERON:0001290 ! proximal straight tubule @@ -132472,7 +132473,7 @@ intersection_of: extends_fibers_into UBERON:0009629 ! coccygeal nerve id: UBERON:0009635 name: parachordal cartilage def: "Chondrocranium chondrification center that fuses with cartilages derived from sclerotome region of occipital somites forming occipital bone, hypoglossal canals and foramen magnum." [https://orcid.org/0000-0002-6601-2165, ISBN:1588903958] -synonym: "parachordal cartilages" EXACT PLURAL [ZFA:0001423] +synonym: "parachordal cartilages" EXACT OMO:0003004 [ZFA:0001423] xref: NCIT:C34243 xref: TAO:0001423 xref: UMLS:C1518887 {source="ncithesaurus:Parachordal_Cartilage"} @@ -132580,7 +132581,7 @@ name: ampullary gland def: "A paired accessory, glandular, androgen-dependent outpouchings of the proximal ductus deferens, one on each side, that produce and secrete lipids and glycogen, components of the seminal fluid; they open into the ampullae at the level of the colliculus seminalis, are lined by simple columnar epithelium with large, oval nuclei, and may be distinguished from those of the prostate as they are surrounded by a characteristic, dense, fibromuscular stroma." [MP:0013323] subset: pheno_slim synonym: "ampulla of the vas" EXACT [] -synonym: "ampullae of the vas" EXACT PLURAL [] +synonym: "ampullae of the vas" EXACT OMO:0003004 [] synonym: "ampullary gland of seminal duct" EXACT [] xref: EMAPA:35123 xref: MA:0000400 @@ -132645,7 +132646,7 @@ id: UBERON:0009650 name: cortical arch of kidney def: "The portions of renal substance (cortex) intervening between the bases of the pyramids and the capsule of the kidney." [http://www.medilexicon.com/medicaldictionary.php?t=5968] synonym: "cortex proper of kidney" RELATED [FMA:17876] -synonym: "cortical arches of kidney" RELATED PLURAL [] +synonym: "cortical arches of kidney" RELATED OMO:0003004 [] synonym: "renal cortex proper" EXACT [FMA:17876] synonym: "renal cortical arch" EXACT [FMA:17876] xref: EMAPA:37486 {source="MA:th"} @@ -132955,7 +132956,7 @@ name: tooth row def: "Anatomical cluster consisting of adjacent teeth constituting a row." [ZFIN:curator] synonym: "dental arcade" EXACT [FMA:59415] synonym: "row of teeth" EXACT [https://orcid.org/0000-0002-6601-2165] -synonym: "tooth rows" EXACT PLURAL [ZFA:0001642] +synonym: "tooth rows" EXACT OMO:0003004 [ZFA:0001642] xref: FMA:59415 xref: TAO:0001667 xref: ZFA:0001642 @@ -133616,7 +133617,7 @@ relationship: part_of UBERON:0002559 {source="FMA"} ! medullary reticular format id: UBERON:0009776 name: intermediate reticular formation def: "." [https://sourceforge.net/tracker/?func=detail&atid=440764&aid=3413098&group_id=36855] -synonym: "intermediate reticular formations" RELATED PLURAL [ZFA:0000219] +synonym: "intermediate reticular formations" RELATED OMO:0003004 [ZFA:0000219] xref: TAO:0000219 xref: ZFA:0000219 is_a: UBERON:0007245 {source="https://orcid.org/0000-0002-6601-2165"} ! nuclear complex of neuraxis @@ -133767,7 +133768,7 @@ relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip id: UBERON:0009842 name: glandular acinus def: "The many-lobed berry cluster of cells that is the terminous of a gland where the secretion is produced is acinar in form." [Wikipedia:Acinus] -synonym: "acini" RELATED PLURAL [Wikipedia:Acinus] +synonym: "acini" RELATED OMO:0003004 [Wikipedia:Acinus] synonym: "acinus" BROAD [FMA:55588] xref: FMA:55588 xref: Wikipedia:Acinus @@ -134275,7 +134276,7 @@ id: UBERON:0009885 name: interlobar artery def: "An artery that supplies a renal lobe." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Interlobar_arteries] subset: pheno_slim -synonym: "arteriae interlobares renis" EXACT PLURAL [FMA:TA] +synonym: "arteriae interlobares renis" EXACT OMO:0003004 [FMA:TA] synonym: "arteriae interlobares renis" RELATED LATIN [Wikipedia:Interlobar_arteries] synonym: "interlobar arteries of kidney" RELATED [FMA:71637] synonym: "interlobar artery of kidney" EXACT [FMA:71637] @@ -134298,7 +134299,7 @@ def: "The interlobar veins are veins of the renal circulation which drain the re synonym: "interlobar vein of kidney" EXACT [FMA:71631] synonym: "interlobar veins of kidney" RELATED [FMA:71631] synonym: "set of interlobar veins of kidney" RELATED [FMA:71631] -synonym: "venae interlobares renis" EXACT PLURAL [FMA:TA] +synonym: "venae interlobares renis" EXACT OMO:0003004 [FMA:TA] synonym: "venae interlobares renis" RELATED LATIN [Wikipedia:Interlobar_veins] xref: FMA:71631 xref: Wikipedia:Interlobar_veins @@ -134504,7 +134505,7 @@ def: "The portion of a kidney consisting of a renal medullary pyramid and the re subset: pheno_slim synonym: "kidney lobe" EXACT [MP:0011381] synonym: "lobi renales" RELATED LATIN [Wikipedia:Renal_lobe] -synonym: "lobi renalis" EXACT PLURAL [Wikipedia:Renal_lobe] +synonym: "lobi renalis" EXACT OMO:0003004 [Wikipedia:Renal_lobe] synonym: "lobus renalis" EXACT [http://www.mondofacto.com/facts/dictionary?lobus+renalis] xref: FMA:17881 xref: NCIT:C32894 @@ -134686,7 +134687,7 @@ id: UBERON:0009955 name: neurogenic placode def: "Cranial ectodermal placode with potential to develop into a component of the nervous system, such as nerves or ganglia." [http://orcid.org/0000-0002-6601-2165, PMID:11523831] subset: efo_slim -synonym: "neurogenic placodes" EXACT PLURAL [ZFA:0001309] +synonym: "neurogenic placodes" EXACT OMO:0003004 [ZFA:0001309] synonym: "placodae neurogenicae" RELATED LATIN [Wikipedia:Neurogenic_placodes] xref: EFO:0003460 xref: TAO:0001309 @@ -134991,7 +134992,7 @@ property_value: taxon_notes "in lampreys and teleost hormones enter the adenohyp id: UBERON:0009977 name: natal tooth def: "Predeciduous teeth present at birth. They may be well formed and normal or may represent hornified epithelial structures without roots. They are found on the gingivae over the crest of the ridge and arise from accessory buds of the dental lamina ahead of the deciduous buds or from buds of the accessory dental lamina. (From Jablonski, Dictionary of Dentistry, 1992)." [MESH:A14.254.860.700.500] -synonym: "natal teeth" EXACT PLURAL [GAID:1267] +synonym: "natal teeth" EXACT OMO:0003004 [GAID:1267] synonym: "natal tooth" RELATED [GAID:1267] xref: GAID:1267 xref: MESH:D009306 @@ -135251,7 +135252,7 @@ id: UBERON:0010005 name: placental labyrinth villous def: "The vascularized and branched structures arising from the rodent trophoblast-derived epithelium that allow an increase its surface area for the efficient exchange of nutrients and wastes between the maternal and fetal circulation." [MP:0011522] subset: pheno_slim -synonym: "placental labyrinth villi" RELATED PLURAL [] +synonym: "placental labyrinth villi" RELATED OMO:0003004 [] synonym: "villous of placental labyrinth" EXACT [] is_a: UBERON:0000061 ! anatomical structure relationship: contributes_to_morphology_of UBERON:0003946 ! placenta labyrinth @@ -136365,12 +136366,12 @@ name: sensory circumventricular organ def: "A circumventricular organ that is capable of monitoring the levels of substances to the cerebrospinal fluid." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "humerosensory circumventricular organ" RELATED [] -synonym: "humerosensory system" RELATED PLURAL [NeuroNames:2856] +synonym: "humerosensory system" RELATED OMO:0003004 [NeuroNames:2856] synonym: "humerosensory system organ" RELATED [] -synonym: "sensitive circumventricular organs" RELATED PLURAL [NeuroNames:2856] -synonym: "sensitive organs" RELATED PLURAL [NeuroNames:2856] +synonym: "sensitive circumventricular organs" RELATED OMO:0003004 [NeuroNames:2856] +synonym: "sensitive organs" RELATED OMO:0003004 [NeuroNames:2856] synonym: "sensory circumventricular organs" RELATED [NeuroNames:2856] -synonym: "sensory CVOs" RELATED PLURAL [NeuroNames:2856] +synonym: "sensory CVOs" RELATED OMO:0003004 [NeuroNames:2856] xref: EMAPA:37741 {source="MA:th"} xref: MA:0002944 xref: neuronames:2856 @@ -136546,7 +136547,7 @@ intersection_of: produced_by UBERON:0004790 ! skin mucous gland [Term] id: UBERON:0010153 name: rumen papilla -synonym: "rumen papillae" EXACT PLURAL [] +synonym: "rumen papillae" EXACT OMO:0003004 [] xref: SCTID:43386000 is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0008285 ! rumen epithelium @@ -136891,7 +136892,7 @@ id: UBERON:0010183 name: liver trabecula def: "A trabecula that is part of a liver." [GO:0060344, OBOL:automatic] synonym: "hepatic trabecula" RELATED [] -synonym: "liver trabeculae" EXACT PLURAL [] +synonym: "liver trabeculae" EXACT OMO:0003004 [] intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002107 ! liver @@ -137002,7 +137003,7 @@ relationship: branching_part_of UBERON:0001516 {source="Wikipedia"} ! abdominal id: UBERON:0010193 name: renal portal vein def: "A portal vein that empties into capillaries within the kidneys." [ISBN:0073040584] -synonym: "renal portal veins" EXACT PLURAL [ZFA:0000577] +synonym: "renal portal veins" EXACT OMO:0003004 [ZFA:0000577] xref: TAO:0000577 xref: ZFA:0000577 is_a: UBERON:0001638 {source="ZFA"} ! vein @@ -137073,7 +137074,7 @@ is_a: UBERON:0000466 {source="CARO"} ! immaterial anatomical entity id: UBERON:0010202 name: lateral line def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [Wikipedia:Lateral_line, ZFA:0001469] -synonym: "lateral lines" EXACT PLURAL [ZFA:0001469] +synonym: "lateral lines" EXACT OMO:0003004 [ZFA:0001469] xref: AAO:0011128 xref: TAO:0001469 xref: Wikipedia:Lateral_line @@ -137102,7 +137103,7 @@ name: mesencephalic vein def: "One of the several veins that drain the mesencephalon; the posterior ones are tributaries to the great cerebral vein; the lateral ones are tributaries to the basal vein. The main veins are: pontomesencephalic vein [TA] (vena pontomesencephalica [TA]), interpeduncular veins [TA] (venae interpedunculares [TA]), intercollicular vein [TA] (vena intercollicularis [TA]), and lateral mesencephalic vein [TA] (vena mesencephalica lateralis [TA])[MedLex]. The major vein of the midbrain, which crosses the midbrain medially to meet it's partner the mesencephalic artery[XAO]." [http://www.medilexicon.com/medicaldictionary.php?t=97378, XAO:0004174] synonym: "msv" RELATED [TAO:0005092] synonym: "vena mesencephalica" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] -synonym: "venae mesencephalicae" EXACT PLURAL [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] +synonym: "venae mesencephalicae" EXACT OMO:0003004 [http://www.medilexicon.com/medicaldictionary.php?s=venae+mesencephalicae] xref: SCTID:43225002 xref: TAO:0005092 xref: XAO:0004174 @@ -137582,7 +137583,7 @@ name: posterior meningeal artery def: "The posterior meningeal artery are small vessels which are branches of the ascending pharyngeal artery which supply the dura mater. It passes through the mastoid foramen before entering the cranium via the jugular foramen." [Wikipedia:Posterior_meningeal_artery] synonym: "arteria meningea posterior" RELATED LATIN [Wikipedia:Posterior_meningeal_artery] synonym: "meningeal branches of the ascending pharyngeal artery" RELATED [Wikipedia:Posterior_meningeal_artery] -synonym: "posterior meningeal arteries" RELATED PLURAL [Wikipedia:Posterior_meningeal_artery] +synonym: "posterior meningeal arteries" RELATED OMO:0003004 [Wikipedia:Posterior_meningeal_artery] synonym: "terminal branch of ascending pharyngeal artery" EXACT [FMA:49503] xref: FMA:49503 xref: NCIT:C33369 @@ -137756,7 +137757,7 @@ def: "One of the three blood vessels, usually one large umbilical vein and two s subset: pheno_slim synonym: "allantoic vessel" EXACT [Hymans:Hymans] synonym: "umbilical cord blood vessel" EXACT [] -synonym: "umbilical cord blood vessels" RELATED PLURAL [] +synonym: "umbilical cord blood vessels" RELATED OMO:0003004 [] synonym: "umbilical vasculature" RELATED [] synonym: "umbilical vessel" EXACT [] xref: EMAPA:36493 @@ -137952,7 +137953,7 @@ name: lacrimal punctum def: "A minute orifice on the summit of the papillae lacrimales, which is the commencement point of the lacrimal canaliculi." [Wikipedia:Lacrimal_punctum] subset: pheno_slim synonym: "lacrimal point" RELATED [Wikipedia:Lacrimal_punctum] -synonym: "lacrimal puncta" RELATED PLURAL [Wikipedia:Lacrimal_punctum] +synonym: "lacrimal puncta" RELATED OMO:0003004 [Wikipedia:Lacrimal_punctum] synonym: "puncta lacrimalia" RELATED LATIN [Wikipedia:Lacrimal_punctum] xref: FMA:59365 xref: SCTID:263344003 @@ -138013,7 +138014,7 @@ def: "Circular cartilage ringing the posterior portion of the eye in the sclera. synonym: "scleral cartilage element" EXACT [PMID:17051547] synonym: "scleral cartilaginous cup" NARROW SENSU [PMID:17051547] synonym: "sclerotic cartilage" EXACT [ZFA:0001509] -synonym: "sclerotic cartilages" RELATED PLURAL [ZFA:0001509] +synonym: "sclerotic cartilages" RELATED OMO:0003004 [ZFA:0001509] xref: TAO:0001509 xref: ZFA:0001509 is_a: UBERON:0003932 {source="ZFA"} ! cartilage element of chondrocranium @@ -138123,7 +138124,7 @@ property_value: curator_notes "An eye adnexal structure, but not necessarily par [Term] id: UBERON:0010297 name: endochondral scleral ossicle -synonym: "sclerotic bones" RELATED PLURAL [ZFA:0001411] +synonym: "sclerotic bones" RELATED OMO:0003004 [ZFA:0001411] xref: TAO:0001411 xref: ZFA:0001411 is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone @@ -139493,9 +139494,9 @@ name: internal naris def: "A naris that is located inside the nasal cavity and connects to the pharynx." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "choana" EXACT [] -synonym: "choanae" RELATED PLURAL [] +synonym: "choanae" RELATED OMO:0003004 [] synonym: "internal choana" EXACT [] -synonym: "internal nares" RELATED PLURAL [] +synonym: "internal nares" RELATED OMO:0003004 [] synonym: "internal nostril" RELATED [] xref: NCIT:C32856 intersection_of: UBERON:0000003 ! naris @@ -139847,7 +139848,7 @@ relationship: part_of UBERON:0010362 {source="cjm"} ! endoskeleton id: UBERON:0010523 name: microcirculatory vessel def: "A vessel of the microcirculature, lying between the arterioles and venules; includes capillaries (blood and lymphatic), metarterioles and arteriovenous anastomoses." [http://orcid.org/0000-0002-6601-2165, MESH:A07.231.432, ZFA:0005251] -synonym: "microcirculatory vessels" RELATED PLURAL [TAO:0005251] +synonym: "microcirculatory vessels" RELATED OMO:0003004 [TAO:0005251] xref: MESH:D055806 xref: TAO:0005251 xref: ZFA:0005251 @@ -140759,7 +140760,7 @@ synonym: "anterior acropodium skeleton" EXACT [] synonym: "fore acropodium skeleton" EXACT [] synonym: "hand digit skeleton" EXACT [] synonym: "manual digit skeleton" EXACT [] -synonym: "manual phalanges" EXACT PLURAL [VSAO:0005029, VSAO:NI] +synonym: "manual phalanges" EXACT OMO:0003004 [VSAO:0005029, VSAO:NI] synonym: "phalanges of hand" EXACT [FMA:71337] synonym: "phalanges of manus" EXACT [] synonym: "set of manual phalanges" EXACT [] @@ -141812,7 +141813,7 @@ id: UBERON:0010856 name: patagium def: "A membranous extension of skin that forms the wing material in animals such as bats. It typically comprises a number of patagial segments, stretching from the side of the body between the forelimb digits and sometimes the hindlimbs." [http://animals.about.com/od/zoologytermsktoz/g/patagium.htm, http://www.brown.edu/Departments/EEB/EML/background/wing_anatomy.htm, Wikipedia:Patagium] synonym: "flight membrane" RELATED [] -synonym: "patagia" RELATED PLURAL [] +synonym: "patagia" RELATED OMO:0003004 [] xref: Wikipedia:Patagium is_a: UBERON:0000094 ! membrane organ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -142153,7 +142154,7 @@ name: gastralium def: "Dermal element that arises via intramembranous ossification and are developmentally distinct from true ribs that articulate with the vertebral column." [GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070, PSPUB:0000170, VSAO:0000127] synonym: "abdominal rib" EXACT [ISBN:0073040584, VSAO:curator] synonym: "belly rib" EXACT [VSAO:curator] -synonym: "gastralia" EXACT PLURAL [VSAO:0000127] +synonym: "gastralia" EXACT OMO:0003004 [VSAO:0000127] xref: VSAO:0000127 xref: Wikipedia:Gastralium is_a: UBERON:0008907 {source="VSAO"} ! dermal bone @@ -143033,7 +143034,7 @@ relationship: part_of UBERON:0002217 {source="Wikipedia"} ! synovial joint id: UBERON:0011002 name: articular cartilage element def: "Cartilage of the lower jaw that give rise to a portion of the anguloarticular compound bone." [ZFA:0001644] -synonym: "articular cartilages" BROAD PLURAL [ZFA:0001644] +synonym: "articular cartilages" BROAD OMO:0003004 [ZFA:0001644] xref: TAO:0001670 xref: ZFA:0001644 is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage @@ -143043,7 +143044,7 @@ id: UBERON:0011004 name: pharyngeal arch cartilage def: "A cartilage element that is part of a splanchnocranium." [OBOL:automatic] subset: efo_slim -synonym: "pharyngeal arch cartilages" EXACT PLURAL [ZFA:0001460] +synonym: "pharyngeal arch cartilages" EXACT OMO:0003004 [ZFA:0001460] synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460] xref: BTO:0006051 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} xref: EFO:0003689 @@ -143359,7 +143360,7 @@ id: UBERON:0011079 name: angular bone def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:0001669, Wikipedia:Angular_bone] synonym: "angular" BROAD [AAO:0000010] -synonym: "angular bones" RELATED PLURAL [ZFA:0001645] +synonym: "angular bones" RELATED OMO:0003004 [ZFA:0001645] synonym: "postoperculare" RELATED [AAO:0000010] synonym: "praearticulare" RELATED [AAO:0000010] xref: AAO:0000010 @@ -144015,7 +144016,7 @@ def: "A gill that develops_from a pharyngeal gill precursor." [OBOL:automatic] subset: efo_slim subset: uberon_slim synonym: "branchia" RELATED [BTO:0000518] -synonym: "gills" RELATED PLURAL [VHOG:0001214] +synonym: "gills" RELATED OMO:0003004 [VHOG:0001214] xref: BTO:0000518 xref: EFO:0000933 xref: GAID:1218 @@ -144044,7 +144045,7 @@ synonym: "depressor gnathalis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "geniohyoideus" NARROW SENSU [DOI:10.1006/bijl.2000.0436, TAO:0000612] synonym: "geniohyoideus muscle" NARROW SENSU [DOI:10.1006/bijl.2000.0436] synonym: "geniothoracis" NARROW SENSU [DOI:10.1006/bijl.2000.0436] -synonym: "protractor hyoidei" NARROW PLURAL [TAO:0000612] +synonym: "protractor hyoidei" NARROW OMO:0003004 [TAO:0000612] synonym: "protractor hyoideus" NARROW SENSU [DOI:10.1006/bijl.2000.0436] xref: AAO:0010655 xref: TAO:0000612 @@ -145013,7 +145014,7 @@ intersection_of: composed_primarily_of UBERON:0011824 ! fibrous connective tissu id: UBERON:0011236 name: deep fascia def: "Deep fascia (or 'investing fascia') is a layer of fascia which can surround individual muscles, and divide groups of muscles into compartments. This is the dense fibrous connective tissue that interpenetrates and surrounds the muscles, bones, nerves and blood vessels of the body. It provides connection and communication in the form of aponeuroses, ligaments, tendons, retinacula, joint capsules, and septa. The deep fasciae envelop all bone; cartilage, and blood vessels and become specialized in muscles and nerves. The high density of collagen fibers is what gives the deep fascia its strength and integrity. The amount of elastin fiber determines how much extensibility and resilience it will have." [Wikipedia:Deep_fascia] -synonym: "deep fasciae" RELATED PLURAL [Wikipedia:Deep_fascia] +synonym: "deep fasciae" RELATED OMO:0003004 [Wikipedia:Deep_fascia] synonym: "deep investing fascia" NARROW [Wikipedia:Deep_fascia] synonym: "fascia of muscles" RELATED [Wikipedia:Deep_fascia] synonym: "fascia profunda" EXACT LATIN [Wikipedia:Deep_fascia] @@ -145063,7 +145064,7 @@ id: UBERON:0011242 name: ethmoid cartilage def: "Region between capsules formed by anterior tips of neurocranial trabeculae." [ISBN:0073040584] subset: efo_slim -synonym: "ethmoid cartilages" EXACT PLURAL [TAO:0001405] +synonym: "ethmoid cartilages" EXACT OMO:0003004 [TAO:0001405] synonym: "ethmoid plate" RELATED [TAO:0001405] xref: AAO:0010134 xref: EFO:0003685 @@ -145956,7 +145957,7 @@ id: UBERON:0011327 name: deep temporal nerve def: "The deep temporal nerves, branches of the mandibular division of the trigeminal nerve, are two in number, anterior and posterior. They pass above the upper border of the pterygoideus externus and enter the deep surface of the temporalis." [Wikipedia:Deep_temporal_nerves] synonym: "deep temporal nerve" RELATED [Wikipedia:Deep_temporal_nerves] -synonym: "nervi temporales profundi" EXACT PLURAL [FMA:TA] +synonym: "nervi temporales profundi" EXACT OMO:0003004 [FMA:TA] xref: FMA:53187 xref: SCTID:280255007 xref: Wikipedia:Deep_temporal_nerves @@ -146108,7 +146109,7 @@ id: UBERON:0011362 name: cranial blood vasculature def: "A blood vasculature that is part of a head." [OBOL:automatic] synonym: "cranial blood vessel" EXACT [ZFA:0005297] -synonym: "cranial blood vessels" RELATED PLURAL [TAO:0005297] +synonym: "cranial blood vessels" RELATED OMO:0003004 [TAO:0005297] synonym: "set of blood vessels of head" EXACT [] xref: TAO:0005297 xref: ZFA:0005297 @@ -146121,7 +146122,7 @@ id: UBERON:0011363 name: cranial lymph vasculature def: "A lymph vasculature that is part of a head." [OBOL:automatic] synonym: "cranial lymph vessel" EXACT [ZFA:0005298] -synonym: "cranial lymph vessels" RELATED PLURAL [TAO:0005298] +synonym: "cranial lymph vessels" RELATED OMO:0003004 [TAO:0005298] synonym: "cranial lymphatics" EXACT [UBERON:cjm] synonym: "set of cranial lymphatic vessels" RELATED [FMA:224562] synonym: "set of lymphatic vessels of head" EXACT [FMA:224562] @@ -146958,7 +146959,7 @@ relationship: part_of UBERON:0001709 {source="EHDAA2"} ! upper jaw region id: UBERON:0011593 name: maxillary tooth def: "A tooth that is attached to a maxilla[TAO,modified]." [TAO:0001627] -synonym: "maxillary teeth" EXACT PLURAL [AAO:0000287] +synonym: "maxillary teeth" EXACT OMO:0003004 [AAO:0000287] xref: AAO:0000287 xref: FMA:321646 xref: SCTID:422279005 @@ -146974,7 +146975,7 @@ property_value: external_definition "Tooth that is attached to the maxilla.[TAO] id: UBERON:0011594 name: dentary tooth def: "Tooth that is attached to a dentary/mandible[TAO,modified]." [TAO:0001628] -synonym: "mandibular teeth" RELATED PLURAL [AAO:0000641] +synonym: "mandibular teeth" RELATED OMO:0003004 [AAO:0000641] synonym: "mandibular tooth" RELATED [] synonym: "tooth of dentary" RELATED [] xref: AAO:0000125 @@ -147092,7 +147093,7 @@ intersection_of: part_of UBERON:0001710 ! lower jaw region id: UBERON:0011603 name: coronoid tooth def: "Tooth that is attached to a coronoid bone." [https://orcid.org/0000-0002-6601-2165] -synonym: "coronoid teeth" EXACT PLURAL [AAO:0000104] +synonym: "coronoid teeth" EXACT OMO:0003004 [AAO:0000104] xref: AAO:0000104 intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: attaches_to UBERON:0011598 ! coronoid bone @@ -147216,12 +147217,12 @@ id: UBERON:0011611 name: ceratohyal bone synonym: "anterior ceratohyal" EXACT [TAO:0000578] synonym: "anterohyal" EXACT [TAO:0000578] -synonym: "anterohyals" RELATED PLURAL [TAO:0000578] +synonym: "anterohyals" RELATED OMO:0003004 [TAO:0000578] synonym: "ceratohyal" EXACT [TAO:0000578] synonym: "ceratohyal anterior" EXACT [TAO:0000578] synonym: "ceratohyal bone" EXACT [TAO:0000578] synonym: "ceratohyale" RELATED [AAO:0000666] -synonym: "ceratohyals" RELATED PLURAL [TAO:0000578] +synonym: "ceratohyals" RELATED OMO:0003004 [TAO:0000578] synonym: "ceratohyoid" NARROW SENSU [] synonym: "ceratohyoid bone" EXACT [] synonym: "distal ceratohyal" EXACT [TAO:0000578] @@ -147426,7 +147427,7 @@ name: ectopterygoid bone def: "A palatal bone which -- like many palatal bones -- may originally have developed as a dermal bone replacing part of the palatoquadrate, the primitive upper jaw. Like the palatine (also called dermopalatine), the ectopterygoid replaces the middle part of the autopalatine. It may be serially homologous with the palatine(s), but is somewhat specialized, being the last (most posterior in palatal view) of the series and bordering the fossa for the jaw muscles. In a typical tetrapod it abuts the palatine anteriorly, the maxilla laterally, the pterygoid or the fossa mandubuaris medially, and the fossa posteriorly." [http://palaeos.com/vertebrates/glossary/glossaryE.html] subset: efo_slim synonym: "ectopterygoid" EXACT [TAO:0000656] -synonym: "ectopterygoids" RELATED PLURAL [ZFA:0000656] +synonym: "ectopterygoids" RELATED OMO:0003004 [ZFA:0000656] xref: EFO:0003552 xref: TAO:0000656 xref: ZFA:0000656 @@ -147608,7 +147609,7 @@ name: jaw muscle subset: efo_slim subset: pheno_slim synonym: "mandibular muscle" EXACT [TAO:0000236] -synonym: "mandibular muscles" EXACT PLURAL [TAO:0000236] +synonym: "mandibular muscles" EXACT OMO:0003004 [TAO:0000236] xref: AAO:0000247 xref: EFO:0003511 xref: TAO:0000236 @@ -148417,9 +148418,9 @@ relationship: capable_of_part_of GO:0060361 ! flight id: UBERON:0011794 name: rectrix feather def: "A flight feather that lies along a single horizontal row on the rear margin of the anatomical tail. Only the central pair are attached (via ligaments) to the tail bones; the remaining rectrices are embedded into the rectricial bulbs, complex structures of fat and muscle that surround those bones. Rectrices are always paired, with a vast majority of species having six pairs. They are absent in grebes and some ratites, and greatly reduced in size in penguins." [Wikipedia:Flight_feather#Rectrices] -synonym: "rectrices" EXACT PLURAL [] +synonym: "rectrices" EXACT OMO:0003004 [] synonym: "rectrix" EXACT [] -synonym: "retrices" EXACT PLURAL [] +synonym: "retrices" EXACT OMO:0003004 [] synonym: "retrix" EXACT [] synonym: "retrix feather" EXACT [] xref: Wikipedia:Flight_feather#Rectrices @@ -148431,7 +148432,7 @@ id: UBERON:0011795 name: remex feather def: "A flight feather located on the posterior side of the wing." [Wikipedia:Flight_feather#Remiges] synonym: "remex" BROAD [] -synonym: "remiges" EXACT PLURAL [] +synonym: "remiges" EXACT OMO:0003004 [] xref: Wikipedia:Flight_feather#Remiges intersection_of: UBERON:0011793 ! flight feather intersection_of: part_of UBERON:0000024 ! forelimb wing @@ -148442,7 +148443,7 @@ name: primary remex feather def: "A remex feather that is connected to the manus." [Wikipedia:Flight_feather#Primaries] synonym: "primary flight feather" EXACT [] synonym: "primary remex" EXACT [] -synonym: "primary remiges" EXACT PLURAL [] +synonym: "primary remiges" EXACT OMO:0003004 [] xref: Wikipedia:Flight_feather#Primaries intersection_of: UBERON:0011795 ! remex feather intersection_of: connected_to UBERON:0002398 ! manus @@ -148454,7 +148455,7 @@ name: secondary remex feather def: "A remex feather that is connected to the ulna." [Wikipedia:Flight_feather#Secondaries] synonym: "secondary flight feather" EXACT [] synonym: "secondary remex" EXACT [] -synonym: "secondary remiges" EXACT PLURAL [] +synonym: "secondary remiges" EXACT OMO:0003004 [] xref: Wikipedia:Flight_feather#Secondaries intersection_of: UBERON:0011795 ! remex feather intersection_of: connected_to UBERON:0001424 ! ulna @@ -148467,10 +148468,10 @@ def: "A remex feather that is connected to the humerus." [Wikipedia:Flight_feath comment: tertials are connected to the humerus in some species. These elongated "true" tertials act as a protective cover for all or part of the folded primaries and secondaries, and do not qualify as flight feathers as such. However, many authorities use the term tertials to refer to the shorter, more symmetrical innermost secondaries of passerines (which perform the same function as true tertials) in an effort to distinguish them from the other secondaries. synonym: "tertial flight feather" EXACT [] synonym: "tertial remex" EXACT [] -synonym: "tertial remiges" EXACT PLURAL [] +synonym: "tertial remiges" EXACT OMO:0003004 [] synonym: "tertiary flight feather" EXACT [] synonym: "tertiary remex" EXACT [] -synonym: "tertiary remiges" EXACT PLURAL [] +synonym: "tertiary remiges" EXACT OMO:0003004 [] synonym: "true tertial" EXACT [] xref: Wikipedia:Flight_feather#Tertials intersection_of: UBERON:0011795 ! remex feather @@ -149181,7 +149182,7 @@ relationship: surrounds CL:0000188 ! cell of skeletal muscle id: UBERON:0011899 name: epimysium def: "Epimysium is a layer of connective tissue which ensheaths the entire muscle. It is composed of dense irregular connective tissue. It is continuous with fascia and other connective tissue wrappings of muscle including the endomysium, and perimysium. It is also continuous with tendons where it becomes thicker and collagenous." [Wikipedia:Epimysium] -synonym: "epimysia" RELATED PLURAL [Wikipedia:Epimysium] +synonym: "epimysia" RELATED OMO:0003004 [Wikipedia:Epimysium] synonym: "fascia of muscle organ" EXACT [FMA:9726] xref: FMA:9726 xref: NCIT:C32527 @@ -149319,7 +149320,7 @@ id: UBERON:0011915 name: cerebellar glomerulus def: "An intertwined cluster of nerve fibers surrounded by glia where mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons." [ISBN:0838580343, MP:0004099] subset: pheno_slim -synonym: "cerebellar glomeruli" EXACT PLURAL [] +synonym: "cerebellar glomeruli" EXACT OMO:0003004 [] xref: EMAPA:37812 {source="MA:th"} xref: NIF_Subcellular:nlx_subcell_20090502 intersection_of: UBERON:0001047 ! neural glomerulus @@ -149330,7 +149331,7 @@ relationship: part_of UBERON:0002956 ! granular layer of cerebellar cortex id: UBERON:0011917 name: thalamic glomerulus def: "Synaptic structure found in thalamic relay nuclei consising of a complex of afferent terminals, relay cell dendrites, interneuron dendrites and other processes. These complexes are surrounded by astrocytic processes." [NIF_Subcellular:nlx_subcell_20090504] -synonym: "thalamic glomeruli" EXACT PLURAL [] +synonym: "thalamic glomeruli" EXACT OMO:0003004 [] xref: NIF_Subcellular:nlx_subcell_20090504 intersection_of: UBERON:0001047 ! neural glomerulus intersection_of: part_of UBERON:0001897 ! dorsal plus ventral thalamus @@ -150115,7 +150116,7 @@ intersection_of: adjacent_to UBERON:0011985 ! infraorbital sinus [Term] id: UBERON:0011996 name: pharyngeal adductor -synonym: "adductors" RELATED PLURAL [ZFA:0000463] +synonym: "adductors" RELATED OMO:0003004 [ZFA:0000463] xref: TAO:0000463 xref: ZFA:0000463 is_a: UBERON:0000933 {source="ZFA"} ! chordate pharyngeal muscle @@ -150258,7 +150259,7 @@ is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue id: UBERON:0012070 name: palatal tooth def: "A tooth that is on the roof of the mouth." [http://palaeos.com/vertebrates/therapsida/anteosauria.html] -synonym: "palatal teeth" EXACT PLURAL [] +synonym: "palatal teeth" EXACT OMO:0003004 [] intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: attaches_to UBERON:0012071 ! palate bone relationship: part_of UBERON:0009680 ! set of upper jaw teeth @@ -150290,7 +150291,7 @@ relationship: part_of UBERON:0007375 ! roof of mouth id: UBERON:0012073 name: tooth of palatine bone def: "A tooth that is attached to a palatine bone." [https://orcid.org/0000-0002-6601-2165] -synonym: "palatine teeth" EXACT PLURAL [] +synonym: "palatine teeth" EXACT OMO:0003004 [] synonym: "palatine tooth" EXACT [] intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: attaches_to UBERON:0001682 ! palatine bone @@ -150315,7 +150316,7 @@ relationship: part_of UBERON:0012072 ! palatal part of dermatocranium id: UBERON:0012075 name: replacement bone def: "Bone that forms as a replacement of another structural tissue." [ZFA:0001628] -synonym: "replacement bones" EXACT PLURAL [ZFA:0001628] +synonym: "replacement bones" EXACT OMO:0003004 [ZFA:0001628] xref: AAO:0010768 xref: TAO:0001637 xref: ZFA:0001628 @@ -150583,7 +150584,7 @@ name: diastema alt_id: UBERON:0013134 def: "A space or gap between two teeth." [UBERON:cjm, Wikipedia:Diastema_(dentistry)] comment: Some animals, like horses, that have diastema between incisors and premolars because canines were evolutionarily loss, sometimes have a vestigial canine in the diastema, but the diastema is still considered between the incisor and premolar. -synonym: "diastemata" RELATED PLURAL [] +synonym: "diastemata" RELATED OMO:0003004 [] synonym: "interdental space" EXACT [] xref: FMA:77271 xref: MESH:D003970 @@ -150658,7 +150659,7 @@ id: UBERON:0012117 name: lumen of nutrient foramen def: "An anatomical space that is part of a nutrient foramen conduit, leading to the medullary cavity of the bone." [https://orcid.org/0000-0002-6601-2165] synonym: "nutrient foramen" EXACT [FMA:75304] -synonym: "nutrient foramina" EXACT PLURAL [] +synonym: "nutrient foramina" EXACT OMO:0003004 [] xref: FMA:75304 xref: SCTID:29288001 intersection_of: UBERON:0000464 ! anatomical space @@ -150803,7 +150804,7 @@ id: UBERON:0012131 name: centrale def: "Endochondral bone located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [https://github.com/obophenotype/uberon/issues/124, PHENOSCAPE:AMAO] synonym: "central mesopodium bone" EXACT [] -synonym: "centralia" RELATED PLURAL [] +synonym: "centralia" RELATED OMO:0003004 [] synonym: "os centrale" EXACT [FMA:77232] xref: EMAPA:36170 xref: FMA:77232 @@ -151776,7 +151777,7 @@ id: UBERON:0012279 name: chromaffin paraganglion def: "Small bodies containing chromaffin cells occurring outside of the adrenal medulla, most commonly near the sympathetic ganglia and in organs such as the kidney, liver, heart and gonads." [MESH:A06.224.736, Wikipedia:Paraganglion] synonym: "chromaffin body" RELATED [MESH:A06.224.736] -synonym: "chromaffin paraganglia" RELATED PLURAL [MESH:A06.224.736] +synonym: "chromaffin paraganglia" RELATED OMO:0003004 [MESH:A06.224.736] synonym: "chromaffin paraganglion" RELATED [MESH:A06.224.736] synonym: "paraganglion" BROAD [ncithesaurus:Paraganglion] xref: CALOHA:TS-2358 @@ -152383,7 +152384,7 @@ property_value: taxon_notes "In rodents, during inguinoscrotal descent the guber id: UBERON:0012327 name: pearly penile papule def: "Small saliences on the ridge of the glans of the male genital organs." [Wikipedia:Hirsuties_coronae_glandis] -synonym: "hirsuties coronae glandis" EXACT PLURAL [Wikipedia:Hirsuties_coronae_glandis] +synonym: "hirsuties coronae glandis" EXACT OMO:0003004 [Wikipedia:Hirsuties_coronae_glandis] synonym: "hirsutoid papilloma" EXACT [Wikipedia:Hirsuties_coronae_glandis] synonym: "preputial gland of penis" RELATED INCONSISTENT [FMA:19653] xref: FMA:19653 @@ -152555,7 +152556,7 @@ comment: May be fused synonym: "acropodial pad" EXACT [] synonym: "acropodium pad" EXACT [] synonym: "digital cushion" RELATED [] -synonym: "digital pads" RELATED PLURAL [] +synonym: "digital pads" RELATED OMO:0003004 [] synonym: "interdigital pad" EXACT [] intersection_of: UBERON:0012348 ! autopod pad intersection_of: part_of UBERON:0012354 ! acropodium region @@ -153367,7 +153368,7 @@ property_value: taxon_notes "includes the cloacal lumen, in species where this i [Term] id: UBERON:0012466 name: extraembryonic cavity -synonym: "extraembryonic cavities" RELATED PLURAL [EHDAA2:0000472] +synonym: "extraembryonic cavities" RELATED OMO:0003004 [EHDAA2:0000472] xref: EHDAA2:0000472 xref: EMAPA:16054 xref: VHOG:0000767 @@ -153387,7 +153388,7 @@ intersection_of: has_quality PATO:0000608 ! closed id: UBERON:0012468 name: anal tooth def: "Triangular calcified papillae (often five) placed radially around the anus of some Holothuriidae." [http://species-identification.org/species.php?species_group=nasc&selected=definitie&menuentry=woordenlijst&record=Anal%20teeth, https://orcid.org/0000-0002-6601-2165, https://www.karger.com/Article/Pdf/142845] -synonym: "anal teeth" EXACT PLURAL [] +synonym: "anal teeth" EXACT OMO:0003004 [] synonym: "calcified anal papilla" RELATED [] synonym: "cloacal tooth" RELATED [] synonym: "perianal tooth" RELATED [] @@ -153445,15 +153446,15 @@ relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum id: UBERON:0012473 name: oral cirrus def: "Small tentacle-like structure surrounding the mouth; they act as sensory devices and as a filter for the water passing into the body." [Wikipedia:Lancelet#Physical_features] -synonym: "buccal cilia" EXACT PLURAL [] +synonym: "buccal cilia" EXACT OMO:0003004 [] synonym: "buccal cillium" RELATED [] -synonym: "buccal cirri" EXACT PLURAL [] +synonym: "buccal cirri" EXACT OMO:0003004 [] synonym: "buccal cirrus" EXACT [] synonym: "buccal tentacle" EXACT [] synonym: "lophophore tentacle" NARROW [NCBITaxon:1206795] -synonym: "oral cilia" EXACT PLURAL [] +synonym: "oral cilia" EXACT OMO:0003004 [] synonym: "oral cillium" RELATED [] -synonym: "oral cirri" EXACT PLURAL [] +synonym: "oral cirri" EXACT OMO:0003004 [] synonym: "oral tentacle" EXACT [] xref: BTO:0001357 is_a: UBERON:0000062 ! organ @@ -153605,7 +153606,7 @@ intersection_of: part_of UBERON:0000162 ! cloaca [Term] id: UBERON:0012485 name: cloacal villus -synonym: "cloacal villi" EXACT PLURAL [] +synonym: "cloacal villi" EXACT OMO:0003004 [] intersection_of: UBERON:0012423 ! layer of microvilli intersection_of: part_of UBERON:0000162 ! cloaca @@ -154068,11 +154069,11 @@ id: UBERON:0013118 name: sulcus of brain def: "A depression or fissure in the surface of the brain. It surrounds the gyri, creating the characteristic appearance of the brain in humans and other large mammals." [https://github.com/obophenotype/uberon/issues/315, Wikipedia:Sulcus_(neuroanatomy)] subset: cumbo -synonym: "cerebral sulci" EXACT PLURAL [DHBA:10610] +synonym: "cerebral sulci" EXACT OMO:0003004 [DHBA:10610] synonym: "cerebral sulci" RELATED [NeuroNames:1208] synonym: "cerebral sulcus" RELATED [NeuroNames:1208] synonym: "fissure of brain" NARROW [Wikipedia:Sulcus_(neuroanatomy)] -synonym: "sulci & spaces" BROAD PLURAL [HBA:9352] +synonym: "sulci & spaces" BROAD OMO:0003004 [HBA:9352] synonym: "sulcus" BROAD [NLX:144078] xref: DHBA:10610 xref: HBA:9352 @@ -154229,7 +154230,7 @@ id: UBERON:0013132 name: penicillar arteriole def: "One of the small straight arteries of the red pulp of the spleen; a branch of the spleen central artery that supplies the red pulp[WP,modified]." [http://www.merriam-webster.com/medical/penicillus, https://orcid.org/0000-0002-6601-2165] synonym: "penicillar artery" RELATED [] -synonym: "penicilli" EXACT PLURAL [http://www.merriam-webster.com/medical/penicilli] +synonym: "penicilli" EXACT OMO:0003004 [http://www.merriam-webster.com/medical/penicilli] synonym: "penicillus" EXACT [FMA:16038] xref: FMA:16038 is_a: UBERON:0001980 ! arteriole @@ -154480,7 +154481,7 @@ id: UBERON:0013153 name: arachnoid villus def: "Small protrusions of the arachnoid mater into vascular sinuses, acting as one-way pressure-sensitive valves." [ISBN:0471888893, Wikipedia:Arachnoid_granulation] synonym: "arachnoid granulations" RELATED [Wikipedia:Arachnoid_granulation] -synonym: "arachnoid villi" RELATED PLURAL [Wikipedia:Arachnoid_granulation] +synonym: "arachnoid villi" RELATED OMO:0003004 [Wikipedia:Arachnoid_granulation] synonym: "arachnoid villus" RELATED [Wikipedia:Arachnoid_granulation] synonym: "arachnoidal granulations" RELATED [Wikipedia:Arachnoid_granulation] synonym: "glandulae pacchioni" RELATED [Wikipedia:Arachnoid_granulation] @@ -154768,7 +154769,7 @@ property_value: location_notes "May be positioned distally or frontally" xsd:str id: UBERON:0013176 name: phonic lip synonym: "monkey lips" RELATED [http://palaeos.com/vertebrates/cetartiodactyla/cetacea.html] -synonym: "phonic lips" RELATED PLURAL [] +synonym: "phonic lips" RELATED OMO:0003004 [] is_a: UBERON:0000481 ! multi-tissue structure relationship: capable_of_part_of GO:0050959 ! echolocation relationship: located_in UBERON:0013177 ! dorsal bursa @@ -154782,7 +154783,7 @@ property_value: taxon_notes "Large and cornified in sperm whales" xsd:string [Term] id: UBERON:0013177 name: dorsal bursa -synonym: "dorsal bursae" RELATED PLURAL [] +synonym: "dorsal bursae" RELATED OMO:0003004 [] synonym: "fatty dorsal bursa" RELATED [] is_a: UBERON:0001013 ! adipose tissue relationship: in_lateral_side_of UBERON:0000033 ! head @@ -154843,7 +154844,7 @@ property_value: taxon_notes "all odontocetes except sperm whales posses two bila id: UBERON:0013189 name: junk chamber synonym: "junk" RELATED [] -synonym: "junk bodies" RELATED PLURAL [] +synonym: "junk bodies" RELATED OMO:0003004 [] synonym: "junk body" RELATED [] synonym: "junk organ" RELATED [] is_a: UBERON:0000062 ! organ @@ -154942,9 +154943,9 @@ relationship: surrounds UBERON:0003143 ! pupa id: UBERON:0013199 name: stria of neuraxis synonym: "neuraxis stria" EXACT [FMA:83854] -synonym: "neuraxis striae" EXACT PLURAL [] +synonym: "neuraxis striae" EXACT OMO:0003004 [] synonym: "stria" BROAD [] -synonym: "striae" BROAD PLURAL [] +synonym: "striae" BROAD OMO:0003004 [] xref: FMA:83854 is_a: UBERON:0002316 ! white matter @@ -155140,7 +155141,7 @@ synonym: "red body" RELATED [Wikipedia:Rete_mirabile] synonym: "red gland" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilia" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilis" RELATED [Wikipedia:Rete_mirabile] -synonym: "retie mirabilia" RELATED PLURAL [Wikipedia:Rete_mirabile] +synonym: "retie mirabilia" RELATED OMO:0003004 [Wikipedia:Rete_mirabile] synonym: "wonderful net" RELATED [Wikipedia:Rete_mirabile] xref: BTO:0006363 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} xref: FMA:76728 @@ -155359,7 +155360,7 @@ property_value: external_definition "Subdivision of trunk which is demarcated fr id: UBERON:0013237 name: genital papilla of vulva def: "The genital papilla is a part of female external genitalia not present in humans, which appears as a small, fleshy flab of tissue. The papilla covers the opening of the vagina." [Wikipedia:Genital_papilla] -synonym: "genital papillae" RELATED PLURAL [] +synonym: "genital papillae" RELATED OMO:0003004 [] synonym: "mammalian genital papilla" EXACT [] xref: Wikipedia:Genital_papilla is_a: UBERON:0000064 ! organ part @@ -156239,7 +156240,7 @@ id: UBERON:0013501 name: cloacal sphincter def: "A sphincter muscle that is part of a cloaca." [OBOL:automatic] comment: the muscles of the cloacal sphincter specialise into the perineal muscles in mammals (Gegenbaur, 1883; Popowsky, 1899; Nishi, 1938). -synonym: "sphincter cloacae" EXACT PLURAL [] +synonym: "sphincter cloacae" EXACT OMO:0003004 [] xref: NCIT:C34129 xref: UMLS:C1516658 {source="ncithesaurus:Cloacal_Sphincter"} intersection_of: UBERON:0004590 ! sphincter muscle @@ -156429,7 +156430,7 @@ id: UBERON:0013523 name: lateral vaginal canal def: "One of two lateral tracts connecting a uterus to a common median tract separated from the median vagina via ureters which prevent their fusion. Found in marsupials." [https://orcid.org/0000-0002-6601-2165] synonym: "lateral vagina" EXACT [] -synonym: "lateral vaginae" EXACT PLURAL [] +synonym: "lateral vaginae" EXACT OMO:0003004 [] intersection_of: UBERON:0000996 ! vagina intersection_of: connected_to UBERON:0013524 ! median vaginal canal intersection_of: in_lateral_side_of UBERON:0003975 ! internal female genitalia @@ -156517,7 +156518,7 @@ name: Brodmann area def: "A segmentation of the cerebral cortex on the basis of cytoarchitecture as described in Brodmann-1905, Brodmann-1909 and Brodmann-10. Maps for several species were presented. NeuroNames includes only areas in the human and in Old World monkeys. Of the latter, Brodmann studied representatives of several species including guenons (one Cercopithecus mona, one Cercocebus torquatus, and one Cercopithecus otherwise unspecified), which are all closely related African species, and one macaque (Macaca mulatta) an Asian species (Brodmann-1905). The legend to the summary map in Brodmann-1909 ascribes the areas simply to Cercopithecus. Brodmann referenced the areas by name and number. The same area number in humans and monkeys did not necessarily refer to topologically or cytoarchitecturally homologous structures. In NeuroNames the standard term for human areas consists of the English translation of Brodmann's Latin name followed by the number he assigned, e.g., agranular frontal area 6; the standard terms for monkey areas are in the format: area 6 of Brodmann-1909. He mapped a portion of areas limited to the banks of sulci, e.g., area 3 of Brodmann-1909 (Brodmann-1909) onto the adjacent, visible surface. This accounts for the fact that some areas appear larger on his surface map than on maps of other authors, e.g., area 3 of Vogts-1919. (Adapted from NeuroNames)." [BIRNLEX:1731] synonym: "Brodmann parcellation scheme region" RELATED [BIRNLEX:1731] synonym: "Brodmann partition scheme region" RELATED [BIRNLEX:1731] -synonym: "Brodmann's areas" RELATED PLURAL [BIRNLEX:1731] +synonym: "Brodmann's areas" RELATED OMO:0003004 [BIRNLEX:1731] xref: BAMS:VTM xref: BIRNLEX:1731 xref: FMA:68596 @@ -157165,7 +157166,7 @@ relationship: part_of UBERON:0000956 ! cerebral cortex id: UBERON:0013590 name: cruciate sulcus def: "A deep groove which runs transversely across the rostro-dorsal surface of the cerebrum and which is one of the landmarks on the cerebral cortex." [http://medical-dictionary.thefreedictionary.com/cruciate+sulcus] -synonym: "cruciate sulci" EXACT PLURAL [] +synonym: "cruciate sulci" EXACT OMO:0003004 [] is_a: UBERON:0013118 ! sulcus of brain [Term] @@ -157550,7 +157551,7 @@ property_value: implements_design_pattern "https://github.com/obophenotype/ubero id: UBERON:0013638 name: horny papilla of tongue synonym: "horny papilla" EXACT [] -synonym: "horny papillae" RELATED PLURAL [] +synonym: "horny papillae" RELATED OMO:0003004 [] is_a: UBERON:0001726 ! papilla of tongue property_value: taxon_notes "In carnivores, functions to hold on to meat as it is being cut by the teeth" xsd:string @@ -157558,7 +157559,7 @@ property_value: taxon_notes "In carnivores, functions to hold on to meat as it i id: UBERON:0013639 name: mechanical papilla of tongue synonym: "mechanical papilla" EXACT [] -synonym: "mechanical papillae" RELATED PLURAL [] +synonym: "mechanical papillae" RELATED OMO:0003004 [] is_a: UBERON:0001726 ! papilla of tongue [Term] @@ -157765,7 +157766,7 @@ id: UBERON:0013672 name: priapium def: "A complex muscular and bony clasping and copulatory organ derived mainly from the pelvic fins, found under the head of male Phallostethoidea with the anus opening on one side and the genital pore on the other. The structure varies among family members. Hook-like ctenactia articulate basally with the aproctal axial which is movably articulated with the proctal axial bone itself, suspended anteriorly by the outer (and sometimes inner) pulvinular bone from the cleithrum and perhaps the urohyal. Other elements are the priapal ribs, the anteplural cartilage (supporting elements along with the cleithrum and the pulvinar), the toxactinium, the infrasulcar and the uncus (forming the claspers along with the ctenactinium), the penial, basipenial, papillary, prepapillary and cristate bones (forming the papillary unit)." [http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium, http://species.wikimedia.org/wiki/Template\:Zt3363.45, ISBN:047175644X] comment: Contains ducts from kidney, gonads, terminal parts of intestine[ISBN:047175644X] -synonym: "priapia" RELATED PLURAL [] +synonym: "priapia" RELATED OMO:0003004 [] is_a: UBERON:0008811 ! intromittent organ relationship: has_part UBERON:0001245 ! anus relationship: only_in_taxon NCBITaxon:8075 ! Atheriniformes @@ -157776,7 +157777,7 @@ relationship: present_in_taxon NCBITaxon:270656 id: UBERON:0013673 name: os priapium def: "Bone of the priapium." [http://en.academic.ru/dic.nsf/en_ichthyology/13676/priapium] -synonym: "ossa priapium" RELATED PLURAL [] +synonym: "ossa priapium" RELATED OMO:0003004 [] is_a: UBERON:0001474 ! bone element relationship: part_of UBERON:0013672 ! priapium @@ -157784,7 +157785,7 @@ relationship: part_of UBERON:0013672 ! priapium id: UBERON:0013674 name: ctenactinium def: "A curved rod-like clasper on the posterior side of the priapium in Phallostethidae." [http://en.academic.ru/dic.nsf/en_ichthyology/3786/ctenactinium] -synonym: "ctenactinia" RELATED PLURAL [] +synonym: "ctenactinia" RELATED OMO:0003004 [] is_a: UBERON:0001474 ! bone element relationship: in_posterior_side_of UBERON:0013672 ! priapium relationship: part_of UBERON:0013672 ! priapium @@ -157793,7 +157794,7 @@ relationship: part_of UBERON:0013672 ! priapium id: UBERON:0013675 name: toxactinium def: "A long curved projection from the anterior end of the priapium in some Phallostethidae." [http://en.academic.ru/dic.nsf/en_ichthyology/17293/toxactinium] -synonym: "toxactinia" RELATED PLURAL [] +synonym: "toxactinia" RELATED OMO:0003004 [] is_a: UBERON:0000062 ! organ relationship: in_anterior_side_of UBERON:0013672 ! priapium relationship: part_of UBERON:0013672 ! priapium @@ -157813,7 +157814,7 @@ id: UBERON:0013677 name: serrated projection of ctenactinium synonym: "ctenactinial serra" RELATED [] synonym: "ctenactinium serra" RELATED [] -synonym: "serrae" BROAD PLURAL [] +synonym: "serrae" BROAD OMO:0003004 [] is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0013674 ! ctenactinium @@ -157898,7 +157899,7 @@ def: "Anatomical space that is an opening in a bone of the skull." [http://orcid synonym: "cranial conduit" NARROW [FMA:53165] synonym: "cranial foramen" NARROW [] synonym: "foramen of skull" EXACT [Wikipedia:Foramina_of_the_skull] -synonym: "foramina of the skull" RELATED PLURAL [Wikipedia:Foramina_of_the_skull] +synonym: "foramina of the skull" RELATED OMO:0003004 [Wikipedia:Foramina_of_the_skull] xref: FMA:53165 xref: SCTID:276742007 xref: Wikipedia:Foramina_of_the_skull @@ -157956,7 +157957,7 @@ name: buttock def: "A zone of soft tissue located on the posterior of the lateral side of the pelvic region corresponding to the gluteal muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Buttocks] subset: efo_slim subset: pheno_slim -synonym: "buttocks" RELATED PLURAL [Wikipedia:Buttocks] +synonym: "buttocks" RELATED OMO:0003004 [Wikipedia:Buttocks] synonym: "clunis" EXACT [FMA:25245] synonym: "gluteal part of pelvic girdle" EXACT [FMA:25245] synonym: "gluteal region" EXACT [FMA:25245] @@ -158361,7 +158362,7 @@ property_value: external_definition "either of a pair of organs in an insect (as id: UBERON:0013731 name: basilar papilla def: "The auditory sensory organ of lizards, amphibians, and birds, which is homologous to the Corti in mammals." [Wikipedia:Basilar_papilla] -synonym: "basilar papillae" RELATED PLURAL [http://orcid.org/0000-0002-6601-2165] +synonym: "basilar papillae" RELATED OMO:0003004 [http://orcid.org/0000-0002-6601-2165] synonym: "papilla basilaris" EXACT LATIN [AAO:0011018] synonym: "sensory epithelium of recessus basilaris" RELATED [] xref: AAO:0011018 @@ -158516,7 +158517,7 @@ id: UBERON:0013746 name: basibranchial element def: "Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [https://github.com/obophenotype/uberon/issues/205, TAO:wd] synonym: "basibranchial" EXACT [ZFA:0000170] -synonym: "basibranchials" EXACT PLURAL [ZFA:0000170] +synonym: "basibranchials" EXACT OMO:0003004 [ZFA:0000170] synonym: "copula 1" RELATED [] synonym: "copula I" RELATED [AAO:0000686] is_a: UBERON:0010363 ! endochondral element @@ -159222,9 +159223,9 @@ id: UBERON:0014389 name: gustatory papilla of tongue def: "A papilla that contain taste buds, including the fungiform, foliate, and circumvallate papillae." [MGI:smb, MP:0006256] synonym: "gustatory papilla" EXACT [] -synonym: "gustatory papillae" RELATED PLURAL [] +synonym: "gustatory papillae" RELATED OMO:0003004 [] synonym: "taste papilla" EXACT [] -synonym: "taste papillae" RELATED PLURAL [] +synonym: "taste papillae" RELATED OMO:0003004 [] xref: FMA:54822 intersection_of: UBERON:0001726 ! papilla of tongue intersection_of: has_part UBERON:0001727 ! taste bud @@ -159753,7 +159754,7 @@ intersection_of: part_of UBERON:0000474 ! female reproductive system id: UBERON:0014459 name: temporal fenestra def: "One of two bilaterally symmetrical holes (fenestrae) in the temporal bone." [Wikipedia:Temporal_fenestra#Temporal_fenestrae] -synonym: "temporal fenestrae" RELATED PLURAL [] +synonym: "temporal fenestrae" RELATED OMO:0003004 [] intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0001678 ! temporal bone relationship: never_in_taxon NCBITaxon:32525 {notes="in extant mammals the synapsis temporal fenestra is closed by the sphenoid", source="Wikipedia"} ! Theria @@ -159764,7 +159765,7 @@ relationship: only_in_taxon NCBITaxon:32524 {notes="not present in earliest amni id: UBERON:0014460 name: supratemporal fenestra def: "A temporal fenestra in the upper part of the temporal bone." [Wikipedia:Skull] -synonym: "supratemporal fenestrae" RELATED PLURAL [] +synonym: "supratemporal fenestrae" RELATED OMO:0003004 [] synonym: "upper temporal fenestra" EXACT [] is_a: UBERON:0014459 ! temporal fenestra @@ -159772,7 +159773,7 @@ is_a: UBERON:0014459 ! temporal fenestra id: UBERON:0014461 name: infratemporal fenestra def: "An infratemporal fenestra, also called the lateral temporal fenestra is an opening in the skull behind the orbit in some animals." [Wikipedia:Infratemporal_fenestra] -synonym: "infratemporal fenestrae" RELATED PLURAL [] +synonym: "infratemporal fenestrae" RELATED OMO:0003004 [] synonym: "lateral temporal fenestra" EXACT [] synonym: "lower temporal fenestra" EXACT [] xref: Wikipedia:Infratemporal_fenestra @@ -159790,7 +159791,7 @@ is_obsolete: true id: UBERON:0014463 name: cardiac ganglion def: "Any of the parasympathetic ganglia of the cardiac plexus between the arch of the aorta and the bifurcation of the pulmonary artery." [ISBN:0-683-40008-8, MP:0003685] -synonym: "cardiac ganglia" RELATED PLURAL [] +synonym: "cardiac ganglia" RELATED OMO:0003004 [] synonym: "cardiac ganglia set" EXACT [FMA:77582] synonym: "cardiac ganglion of Wrisberg" EXACT [] synonym: "ganglia cardiaca" EXACT [FMA:TA] @@ -159817,7 +159818,7 @@ intersection_of: part_of UBERON:0002113 ! kidney id: UBERON:0014465 name: antorbital fenestra def: "An antorbital fenestra is an opening in the skull, in front of the eye sockets. This skull formation first appeared in archosaurs during the Triassic Period. Living birds today possess antorbital fenestrae, but the feature has been lost in modern crocodilians. In some archosaur species, the opening has closed but its location is still marked by a depression, or fossa, on the surface of the skull. This is called an antorbital fossa." [Wikipedia:Antorbital_fenestra] -synonym: "antorbital fenestrae" RELATED PLURAL [] +synonym: "antorbital fenestrae" RELATED OMO:0003004 [] is_a: UBERON:0004705 ! fenestra relationship: part_of UBERON:0003129 ! skull @@ -160353,7 +160354,7 @@ id: UBERON:0014510 name: lamina of omasum def: "A muscular sheet of the omasum wall consisting of two lateral layers and an intermediate layer of smooth muscle covered with non-glandular stratified squamous epithelium." [http://orcid.org/0000-0002-6601-2165, PMID:7978351] synonym: "omasal lamina" EXACT [] -synonym: "omasal laminae" EXACT PLURAL [] +synonym: "omasal laminae" EXACT OMO:0003004 [] xref: SCTID:24667000 intersection_of: UBERON:0004923 ! organ component layer intersection_of: has_part UBERON:0011952 ! non-glandular epithelium @@ -160619,9 +160620,9 @@ synonym: "isthmus of the cingulate gyrus" RELATED [NeuroNames:163] synonym: "isthmus-2" RELATED LATIN [NeuroNames:163] synonym: "lamina alba of cerebellar cortex" EXACT [] synonym: "laminae albae of cerebellar cortex" EXACT [] -synonym: "laminae albae of cerebellar cortex" RELATED PLURAL [BIRNLEX:1105] +synonym: "laminae albae of cerebellar cortex" RELATED OMO:0003004 [BIRNLEX:1105] synonym: "white lamina of cerebellum" EXACT [] -synonym: "white laminae of cerebellum" EXACT PLURAL [BIRNLEX:1105] +synonym: "white laminae of cerebellum" EXACT OMO:0003004 [BIRNLEX:1105] xref: BIRNLEX:1105 xref: neuronames:163 {source="BIRNLEX:1105"} xref: SCTID:362413004 @@ -161657,7 +161658,7 @@ disjoint_from: UBERON:0033483 {source="NIFSTD"} ! lumbar spinal cord gray commis id: UBERON:0014639 name: frontal sulcus def: "A sulcus of brain that is part of a frontal cortex." [OBOL:automatic] -synonym: "frontal lobe sulci" EXACT PLURAL [HBA:FLs] +synonym: "frontal lobe sulci" EXACT OMO:0003004 [HBA:FLs] synonym: "frontal lobe sulcus" EXACT [] xref: HBA:9354 xref: NCIT:C32639 @@ -162006,7 +162007,7 @@ relationship: tributary_of UBERON:0001653 ! facial vein id: UBERON:0014687 name: temporal sulcus def: "Any of three grooves in the temporal lobe including the inferior, middle, and superior temporal sulci." [ncithesaurus:Temporal_Sulcus] -synonym: "temporal lobe sulci" EXACT PLURAL [HBA:TLs] +synonym: "temporal lobe sulci" EXACT OMO:0003004 [HBA:TLs] synonym: "temporal lobe sulcus" EXACT [] xref: HBA:9377 xref: NCIT:C33744 @@ -162674,7 +162675,7 @@ comment: Classification notes: May be considered an external sphincter[PMID:8224 synonym: "crura of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] synonym: "crural diaphragm" EXACT [PMID:23586979] synonym: "crus of the diaphragm" RELATED [Wikipedia:Crus_of_diaphragm] -synonym: "diaphragm crura" RELATED PLURAL [] +synonym: "diaphragm crura" RELATED OMO:0003004 [] synonym: "diaphragmatic crura" RELATED [Wikipedia:Crus_of_diaphragm] xref: EHDAA2:0000597 xref: EMAPA:17703 @@ -162729,7 +162730,7 @@ intersection_of: drains UBERON:0001712 ! upper eyelid id: UBERON:0014769 name: palpebral vein def: "A blood vessel that drains from from an eyelid." [http://orcid.org/0000-0002-6601-2165] -synonym: "palpebral veins" RELATED PLURAL [] +synonym: "palpebral veins" RELATED OMO:0003004 [] synonym: "venae palpebrales" RELATED LATIN [] xref: FMA:51997 xref: SCTID:152208004 @@ -162811,7 +162812,7 @@ name: spinal neuromere def: "A neuromere that is part of the presumptive spinal cord." [http://orcid.org/0000-0002-6601-2165] synonym: "spinal cord metameric segment" EXACT [] synonym: "spinal cord segment" RELATED [TAO:0001332] -synonym: "spinal neuromeres" EXACT PLURAL [TAO:0001332] +synonym: "spinal neuromeres" EXACT OMO:0003004 [TAO:0001332] xref: TAO:0001332 xref: ZFA:0001332 intersection_of: UBERON:0004731 ! neuromere @@ -163725,9 +163726,9 @@ name: intersomitic vessel def: "One of the primary blood vessel sprouts that originate from the dorsal aorta and posterior cardinal vein and align dorsoventrally at the myotomal boundaries between somites." [MGI:anna] subset: pheno_slim synonym: "intersegmental vessel" EXACT [ZFA:0001285] -synonym: "intersegmental vessels" EXACT PLURAL [ZFA:0001285] +synonym: "intersegmental vessels" EXACT OMO:0003004 [ZFA:0001285] synonym: "intersomitic blood vessel" EXACT [XAO:0004075] -synonym: "intersomitic vessels" EXACT PLURAL [ZFA:0001285] +synonym: "intersomitic vessels" EXACT OMO:0003004 [ZFA:0001285] synonym: "segmental vessel" EXACT [ZFA:0001285] xref: EFO:0003664 xref: EMAPA:37389 {source="MA:th"} @@ -163856,7 +163857,7 @@ def: "The space between a blood vessel and the pia mater." [DOI:10.1007/s11064-0 comment: VRS belonging to the subarachnoid space are continuous with VRS of the subpial space. The direct communication between VRS of the subarachnoid space and the subpial space is unique to the brain's arteries, as no leptomeningeal layers surround the brain's veins[WP] subset: pheno_slim synonym: "perivascular region" EXACT [] -synonym: "perivascular spaces" RELATED PLURAL [] +synonym: "perivascular spaces" RELATED OMO:0003004 [] synonym: "Virchow-Robin space" EXACT [Wikipedia:Virchow-Robin_space] synonym: "VRS" BROAD OMO:0003000 [Wikipedia:Virchow-Robin_space] xref: NCIT:C83196 @@ -164745,7 +164746,7 @@ id: UBERON:0015067 name: centrale endochondral element def: "Endochondral element located between the proximal and distal rows of carpals or tarsals and thus representing the central carpals or tarsals[PHENOSCAPE]." [PHENOSCAPE:AMAO] synonym: "central mesopodium element" EXACT [UBERON:0012131] -synonym: "centralia" RELATED PLURAL [UBERON:0012131] +synonym: "centralia" RELATED OMO:0003004 [UBERON:0012131] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0009878 ! mesopodial skeleton property_value: curator_notes "This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus" xsd:string @@ -165572,7 +165573,7 @@ def: "A corkscrew-like artery in premenstrual or progestational endometrium; ute subset: pheno_slim synonym: "endometrial spiral arteriole" EXACT [] synonym: "endometrial spiral artery" EXACT [BTO:0003371] -synonym: "spiral arteries" RELATED PLURAL [] +synonym: "spiral arteries" RELATED OMO:0003004 [] synonym: "spiral artery" BROAD [BTO:0003371] synonym: "spiral artery" RELATED [] xref: BTO:0003371 @@ -165618,7 +165619,7 @@ id: UBERON:0015174 name: helicine artery of penis def: "The helicine arteries of penis are arteries in the penis. They are found in the corpora cavernosa penis. They are involved in the process of erection." [Wikipedia:Helicine_arteries_of_penis] synonym: "arteriae helicinae penis" EXACT LATIN [Wikipedia:Helicine_arteries_of_penis] -synonym: "helicine arteries" RELATED PLURAL [] +synonym: "helicine arteries" RELATED OMO:0003004 [] xref: FMA:19796 xref: SCTID:279924008 xref: Wikipedia:Helicine_arteries_of_penis @@ -168272,7 +168273,7 @@ relationship: part_of UBERON:0000474 ! female reproductive system id: UBERON:0016508 name: pelvic ganglion synonym: "inferior hypogastric ganglion" EXACT [FMA:80131] -synonym: "pelvic ganglia" RELATED PLURAL [] +synonym: "pelvic ganglia" RELATED OMO:0003004 [] xref: EMAPA:31527 xref: FMA:80131 xref: SCTID:324760006 @@ -169917,7 +169918,7 @@ id: UBERON:0017163 name: skin bony tubercle def: "A bony structure embedded in skin, roughly equivalent to osteoderms." [PHENOSCAPE:Nizar] synonym: "bony tubercle" BROAD [] -synonym: "bony tubercles" RELATED PLURAL [UBERONTEMP:3b77fb04-1e62-43af-a84b-5d5eb7388525] +synonym: "bony tubercles" RELATED OMO:0003004 [UBERONTEMP:3b77fb04-1e62-43af-a84b-5d5eb7388525] intersection_of: UBERON:0005813 ! tubercle intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue intersection_of: part_of UBERON:0002199 ! integument @@ -169963,7 +169964,7 @@ id: UBERON:0017258 name: placentome of cotyledonary placenta def: "An anatomical group consisting of a placental caruncle and a placental cotyldeon, a placental unit in some mammals such as ruminants." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/ruminants.html] synonym: "placentome" EXACT [PHENOSCAPE:ad] -synonym: "placentomes" RELATED PLURAL [] +synonym: "placentomes" RELATED OMO:0003004 [] is_a: UBERON:0034921 ! multi organ part structure relationship: has_part UBERON:0010008 ! placental cotyledon relationship: has_part UBERON:0017259 ! placental caruncle @@ -170028,7 +170029,7 @@ intersection_of: part_of UBERON:0007116 ! primary dentition id: UBERON:0017294 name: horn of hemipenis synonym: "hemipenis horn" EXACT [UBERONTEMP:faea86d9-5281-441b-be89-0f0be1d49129] -synonym: "hemipenis horns" RELATED PLURAL [UBERONTEMP:faea86d9-5281-441b-be89-0f0be1d49129] +synonym: "hemipenis horns" RELATED OMO:0003004 [UBERONTEMP:faea86d9-5281-441b-be89-0f0be1d49129] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0008812 ! hemipenis @@ -170174,7 +170175,7 @@ intersection_of: part_of UBERON:0000033 ! head id: UBERON:0017621 name: cephalic spine def: "One of the spines, probably denticle derivatives, occurring singly or in pairs just behind the orbit on the cheek area in some fossil sharks. May have occurred only in males and may have served to hold the female during copulation, e.g. in the Jurassic genera Hybodus, Asteracanthus and Acrodus." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] -synonym: "cephalic spines" RELATED PLURAL [UBERONTEMP:8c052198-acff-4165-b1a0-fd6bb2de6e10] +synonym: "cephalic spines" RELATED OMO:0003004 [UBERONTEMP:8c052198-acff-4165-b1a0-fd6bb2de6e10] is_a: UBERON:0008260 ! spine appendage relationship: only_in_taxon NCBITaxon:7777 ! Chondrichthyes relationship: part_of UBERON:0000033 ! head @@ -170844,8 +170845,8 @@ relationship: only_in_taxon NCBITaxon:9255 ! Monotremata id: UBERON:0018134 name: rugal fold of scrotum def: "A folded ridge of skin that is part of a scrotum superficial to the dartos muscle." [http://orcid.org/0000-0002-6601-2165] -synonym: "folded ridge of skin of scrotum" EXACT PLURAL [] -synonym: "scrotal rugae" EXACT PLURAL [] +synonym: "folded ridge of skin of scrotum" EXACT OMO:0003004 [] +synonym: "scrotal rugae" EXACT OMO:0003004 [] intersection_of: UBERON:0000014 ! zone of skin intersection_of: has_quality PATO:0001359 ! rugose intersection_of: part_of UBERON:0015479 ! scrotum skin @@ -171277,7 +171278,7 @@ relationship: only_in_taxon NCBITaxon:32523 {source="ISBN:978-1-4615-0037-7"} ! id: UBERON:0018238 name: dorsal column nucleus def: "A nucleus that contain secondary neurons of the dorsal column-medial lemniscus pathway, which carries fine touch and proprioceptive information from the body to the brain. Examples: gracile nucleus, cuneat nucleus, nucleus of Bishoff." [ISBN:978-1-4615-0037-7] -synonym: "dorsal column nuclei" RELATED PLURAL [NeuroNames:1947] +synonym: "dorsal column nuclei" RELATED OMO:0003004 [NeuroNames:1947] xref: MBA:720 xref: neuronames:1947 xref: Wikipedia:Dorsal_column_nuclei @@ -171348,7 +171349,7 @@ id: UBERON:0018243 name: thymic artery def: "A vein that supplies blood to the thymus." [http://orcid.org/0000-0002-6601-2165] comment: The arteries supplying the thymus are derived from the internal thoracic artery, and from the superior thyroid artery and inferior thyroids.[WP] -synonym: "thymic arteries" RELATED PLURAL [Wikipedia:Thymic_branches_of_internal_thoracic_artery] +synonym: "thymic arteries" RELATED OMO:0003004 [Wikipedia:Thymic_branches_of_internal_thoracic_artery] synonym: "thymic branch of internal thoracic artery" EXACT [FMA:10647] xref: FMA:10647 xref: SCTID:76543001 @@ -172781,9 +172782,9 @@ id: UBERON:0018415 name: ethmoid foramen def: "An bone foramen in the ethmoid bone." [http://orcid.org/0000-0002-6601-2165] comment: Taxon nodes: In humans, refers to anterior or posterior ethmoid foramina -synonym: "ethmoid foramina" RELATED PLURAL [] +synonym: "ethmoid foramina" RELATED OMO:0003004 [] synonym: "ethmoidal foramen" EXACT [] -synonym: "ethmoidal foramina" RELATED PLURAL [] +synonym: "ethmoidal foramina" RELATED OMO:0003004 [] synonym: "foramina ethmoidalia" EXACT LATIN [] xref: Wikipedia:Ethmoidal_foramina intersection_of: UBERON:0004111 ! anatomical conduit @@ -172806,7 +172807,7 @@ def: "A vascular foramen opening on the outer surface of a nasal bone." [http:// synonym: "foramen of nasal bone" RELATED [] synonym: "foramina nasalia" EXACT LATIN [Wikipedia:Nasal_foramina] synonym: "nasal foramen" EXACT [] -synonym: "nasal foramina" RELATED PLURAL [FMA:57653] +synonym: "nasal foramina" RELATED OMO:0003004 [FMA:57653] xref: FMA:57653 xref: Wikipedia:Nasal_foramina intersection_of: UBERON:0013685 ! foramen of skull @@ -172959,7 +172960,7 @@ id: UBERON:0018544 name: trigeminal nerve muscle def: "Muscle innervated by the trigeminal nerve (Cranial Nerve V)." [MFMO:0000072] synonym: "muscle innervated by the trigeminal nerve" EXACT [] -synonym: "muscles innervated by the trigeminal nerve" EXACT PLURAL [MFMO:0000072] +synonym: "muscles innervated by the trigeminal nerve" EXACT OMO:0003004 [MFMO:0000072] xref: MFMO:0000072 intersection_of: UBERON:0001630 ! muscle organ intersection_of: innervated_by UBERON:0001645 ! trigeminal nerve @@ -173655,7 +173656,7 @@ relationship: part_of UBERON:0013190 ! entotympanic bone id: UBERON:0018656 name: puparium def: "A chitin-based cuticular shell derived from the cuticle of the final larval instar that surrounds the pupal form of the organism." [Wikipedia:Pupa#Puparium] -synonym: "puparia" RELATED PLURAL [] +synonym: "puparia" RELATED OMO:0003004 [] is_a: UBERON:0001001 {source="FBbt"} ! chitin-based cuticle relationship: develops_from UBERON:0002548 ! larva relationship: surrounds UBERON:0003143 ! pupa @@ -174265,7 +174266,7 @@ name: upper eyelash subset: pheno_slim synonym: "eyelash of upper eyelid" EXACT [FMA:59408] synonym: "hair of upper eyelid" RELATED [] -synonym: "upper eyelid cilia" RELATED PLURAL [] +synonym: "upper eyelid cilia" RELATED OMO:0003004 [] synonym: "upper eyelid cilium" EXACT [] synonym: "upper eyelid eyelash" EXACT [FMA:59408] xref: FMA:59408 @@ -174278,7 +174279,7 @@ name: lower eyelash subset: pheno_slim synonym: "eyelash of lower eyelid" EXACT [FMA:59409] synonym: "hair of lower eyelid" RELATED [] -synonym: "lower eyelid cilia" RELATED PLURAL [] +synonym: "lower eyelid cilia" RELATED OMO:0003004 [] synonym: "lower eyelid cilium" EXACT [] synonym: "lower eyelid eyelash" EXACT [FMA:59409] xref: FMA:59409 @@ -181682,7 +181683,7 @@ synonym: "blood sinus" BROAD [] synonym: "lower cavernous sinus" NARROW SENSU [] synonym: "ring sinus" NARROW [] synonym: "sinus of vibrissa" EXACT [] -synonym: "sinuses of vibrissae" RELATED PLURAL [] +synonym: "sinuses of vibrissae" RELATED OMO:0003004 [] synonym: "upper cavernous sinus" NARROW SENSU [] synonym: "vibrissa sinus" EXACT [] is_a: UBERON:0000064 ! organ part @@ -181894,8 +181895,8 @@ relationship: has_quality PATO:0002299 ! tubular id: UBERON:0034971 name: aortic body def: "One of several small clusters of chemoreceptors, baroreceptors, and supporting cells located along the aortic arch." [Wikipedia:Aortic_body] -synonym: "aortic bodies" RELATED PLURAL [Wikipedia:Aortic_body] -synonym: "aortic glands" RELATED PLURAL [Wikipedia:Aortic_body] +synonym: "aortic bodies" RELATED OMO:0003004 [Wikipedia:Aortic_body] +synonym: "aortic glands" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "Zuckerkandl's body" RELATED [Wikipedia:Aortic_body] xref: BTO:0006193 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} xref: MESH:D001016 @@ -181926,7 +181927,7 @@ relationship: part_of UBERON:0034980 {source="cjm"} ! jugular bulb id: UBERON:0034978 name: paraganglion (generic) def: "A cluster of neuroendocrine cells derived from neural crest. Paraganglia may be chromaffin or nonchromaffin." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Paraganglion] -synonym: "paraganglia" RELATED PLURAL [] +synonym: "paraganglia" RELATED OMO:0003004 [] xref: FMA:15648 xref: SCTID:281695005 xref: Wikipedia:Paraganglion @@ -182947,7 +182948,7 @@ relationship: intersects_midsagittal_plane_of UBERON:0003278 ! skeleton of lower id: UBERON:0035118 name: material entity in digestive tract def: "Any material entity that is located in the digestive tract. This includes undigested food and liquid as well as unexcreted waste products. It also includes other entities such as ingested stones used to aid digestion. Any microbial cells or cell populations are also included." [https://github.com/EnvironmentOntology/envo/issues/110] -synonym: "digestive tract contents" EXACT PLURAL [] +synonym: "digestive tract contents" EXACT OMO:0003004 [] synonym: "ingested material entity" RELATED [] intersection_of: UBERON:0000061 ! anatomical structure intersection_of: located_in UBERON:0006909 ! lumen of digestive tract @@ -183054,13 +183055,13 @@ id: UBERON:0035130 name: auditory ossicle endochondral element synonym: "auditory skeletal element" EXACT [] synonym: "ear ossicle element" RELATED [] -synonym: "ear ossicles element" RELATED PLURAL [] +synonym: "ear ossicles element" RELATED OMO:0003004 [] synonym: "middle ear ossicle element" EXACT [MP:0005105] synonym: "middle ear skeletal element" RELATED [] synonym: "ossicle element" BROAD [EMAPA:17824, Wikipedia:Auditory_ossicle] synonym: "ossicle element of ear" RELATED [] synonym: "ossicle element of inner ear" RELATED [] -synonym: "ossicular chain element" RELATED PLURAL [] +synonym: "ossicular chain element" RELATED OMO:0003004 [] is_a: UBERON:0010363 ! endochondral element relationship: contributes_to_morphology_of UBERON:0001756 ! middle ear relationship: develops_from UBERON:0003099 {source="PMID:11237469", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! cranial neural crest @@ -184827,7 +184828,7 @@ is_a: UBERON:0014450 ! pretectal nucleus id: UBERON:0035563 name: magnocellular superficial pretectal nucleus def: "A nucleus that is part of the superficial pretectum and is characterized by large widely scattered cells." [ISBN:0471888893] -synonym: "magnocellular superficial pretectal nuclei" EXACT PLURAL [ZFA:0000235] +synonym: "magnocellular superficial pretectal nuclei" EXACT OMO:0003004 [ZFA:0000235] synonym: "PSm" RELATED OMO:0003000 [ISBN:0471888893] xref: TAO:0000235 xref: ZFA:0000235 @@ -184842,7 +184843,7 @@ property_value: external_definition "Diencephalic nucleus that is part of the su id: UBERON:0035564 name: parvocellular superficial pretectal nucleus def: "A nucleus that is part of the superficial pretectum and is characterized by small cells." [ISBN:0471888893, ZFA:0000406] -synonym: "parvocellular superficial pretectal nuclei" EXACT PLURAL [ZFA:0000406] +synonym: "parvocellular superficial pretectal nuclei" EXACT OMO:0003004 [ZFA:0000406] synonym: "PSp" RELATED OMO:0003000 [ISBN:0471888893] synonym: "superficial pretectal nucleus" BROAD SENSU [ISBN:0471888893, NCBITaxon:27686, NCBITaxon:7900] xref: TAO:0000406 @@ -184856,7 +184857,7 @@ property_value: taxon_notes "in reedfishes and sturgeons this is the only nucleu id: UBERON:0035565 name: caudal pretectal nucleus def: "Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain." [ZFA:0000631] -synonym: "caudal pretectal nuclei" EXACT PLURAL [ZFA:0000631] +synonym: "caudal pretectal nuclei" EXACT OMO:0003004 [ZFA:0000631] synonym: "nucleus glomerulosus" RELATED [] synonym: "posterior pretectal nucleus" RELATED INCONSISTENT [ZFA:0000631] xref: TAO:0000631 @@ -184909,7 +184910,7 @@ name: periventricular pretectal nucleus def: "A nucleus medial to the central pretectal nucleus in the periventricular zone." [ISBN:0471888893] comment: Can be subdivided into dorsal and ventral[ISBN:0471888893] synonym: "periventricular pretectum" EXACT [ZFA:0000601] -synonym: "pretectal periventricular nuclei" EXACT PLURAL [ZFA:0000601] +synonym: "pretectal periventricular nuclei" EXACT OMO:0003004 [ZFA:0000601] synonym: "pretectal periventricular nucleus" EXACT [ZFA:0000601] xref: TAO:0000601 xref: ZFA:0000601 @@ -185343,7 +185344,7 @@ synonym: "accessory visual structures set" RELATED [FMA:76554] synonym: "adnexa oculi" EXACT LATIN [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] synonym: "adnexal parts of orbital region" RELATED [] synonym: "appendage of eye" RELATED [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] -synonym: "appendages of the eye" RELATED PLURAL [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] +synonym: "appendages of the eye" RELATED OMO:0003004 [http://medical-dictionary.thefreedictionary.com/ocular+adnexa] synonym: "eye adnexa" RELATED [] synonym: "set of accessory visual structures" RELATED [FMA:76554] synonym: "structurae oculi accessoriae" RELATED LATIN [Wikipedia:Accessory_visual_structures] @@ -185457,13 +185458,13 @@ id: UBERON:0035655 name: paraumbilical vein def: "The small superficial veins that arise from the cutaneous veins, and run from the umbilicus along the round ligament of the liver; these terminate as accessory portal veins in the liver." [https://github.com/obophenotype/uberon/issues/1134, ISBN:0683400088, MGI:cs, PMID:7400038] synonym: "para-umbilical vein" RELATED [Wikipedia:Paraumbilical_vein] -synonym: "para-umbilical veins" RELATED PLURAL [FMA:71591] -synonym: "para-umbilical veins set" RELATED PLURAL [FMA:71591] +synonym: "para-umbilical veins" RELATED OMO:0003004 [FMA:71591] +synonym: "para-umbilical veins set" RELATED OMO:0003004 [FMA:71591] synonym: "paraumbilical vasculature" RELATED [] synonym: "parumbilical vein" RELATED [Wikipedia:Paraumbilical_vein] -synonym: "parumbilical veins" RELATED PLURAL [Wikipedia:Paraumbilical_vein] +synonym: "parumbilical veins" RELATED OMO:0003004 [Wikipedia:Paraumbilical_vein] synonym: "vein of Sappey" RELATED [FMA:71591] -synonym: "veins of Sappey" RELATED PLURAL [FMA:71591] +synonym: "veins of Sappey" RELATED OMO:0003004 [FMA:71591] synonym: "venae paraumbilicales" EXACT LATIN [FMA:TA] xref: EMAPA:37228 {source="MA:th"} xref: FMA:71591 @@ -186585,8 +186586,8 @@ synonym: "CCRD" RELATED OMO:0003000 [DHBA:12026] synonym: "corpus callosum radiation" EXACT [FMA:77693] synonym: "radiatio corporis callosi" EXACT LATIN [FMA:TA] synonym: "radiatio corporis callosi" RELATED LATIN [NeuroNames:1336] -synonym: "radiations of corpus callosum" RELATED PLURAL [HBA:265504962] -synonym: "radiations of the corpus callosum" RELATED PLURAL [NeuroNames:1336] +synonym: "radiations of corpus callosum" RELATED OMO:0003004 [HBA:265504962] +synonym: "radiations of the corpus callosum" RELATED OMO:0003004 [NeuroNames:1336] xref: DHBA:12026 xref: FMA:77693 xref: HBA:265504962 @@ -186639,7 +186640,7 @@ is_a: UBERON:0003980 {source="FMA"} ! cerebellum fissure [Term] id: UBERON:0035927 name: sulcus of parietal lobe -synonym: "parietal lobe sulci" EXACT PLURAL [HBA:9370] +synonym: "parietal lobe sulci" EXACT OMO:0003004 [HBA:9370] synonym: "parietal lobe sulcus" EXACT [] synonym: "PLs" RELATED OMO:0003000 [HBA:9370] xref: HBA:9370 @@ -186778,7 +186779,7 @@ relationship: part_of UBERON:0019262 {source="HBA"} ! white matter of myelenceph id: UBERON:0035939 name: amiculum def: "A dense surrounding coat of white fibers, as the sheath of the inferior olive and of the dentate nucleus." [http://medical-dictionary.thefreedictionary.com/amicula] -synonym: "amicula" RELATED PLURAL [] +synonym: "amicula" RELATED OMO:0003004 [] xref: FMA:83870 xref: RadLex:RID6708 is_a: UBERON:0002316 ! white matter @@ -187100,7 +187101,7 @@ relationship: part_of UBERON:0003023 ! pontine tegmentum [Term] id: UBERON:0035974 name: anteroventral preoptic nucleus -synonym: "anteroventral preoptic nuclei" RELATED PLURAL [NLX:17240] +synonym: "anteroventral preoptic nuclei" RELATED OMO:0003004 [NLX:17240] synonym: "AVP" RELATED OMO:0003000 [MBA:263] xref: MBA:263 xref: neuronames:1813 @@ -188074,7 +188075,7 @@ relationship: branching_part_of UBERON:0000377 ! maxillary nerve [Term] id: UBERON:0036265 name: conjunctival papilla -synonym: "conjunctival papillae" EXACT PLURAL [] +synonym: "conjunctival papillae" EXACT OMO:0003004 [] xref: SCTID:280681004 intersection_of: UBERON:2001995 ! papilla intersection_of: part_of UBERON:0001811 ! conjunctiva @@ -188223,7 +188224,7 @@ id: UBERON:0036293 name: oral frenulum def: "A small fold of mucous membrane in the mouth, connecting either the tongue or the lip to the mouth mucosa." [https://github.com/obophenotype/human-phenotype-ontology/issues/3336, UBERON:cjm] synonym: "frenulum" BROAD [] -synonym: "oral frenula" EXACT PLURAL [HP:0000190] +synonym: "oral frenula" EXACT OMO:0003004 [HP:0000190] synonym: "oral frenulum" EXACT [HP:0000190] synonym: "oral frenum" RELATED [] xref: SCTID:303771008 @@ -190594,7 +190595,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000003 name: obsolete adaxial cell comment: TO DO: replaced by CL:0007016 not in release of CL yet. -synonym: "adaxial cells" EXACT PLURAL [TAO:0000003] +synonym: "adaxial cells" EXACT OMO:0003004 [TAO:0000003] xref: ZFA:0000003 is_obsolete: true @@ -190625,7 +190626,7 @@ def: "A group of cells that migrate at the leading edge of shield during gastrul comment: incorrectly generalized to teleosts so being obsoleted. 'embryonic structure' and develops_from some 'noninvoluting endocytic marginal cell cluster' synonym: "DFCs" EXACT [TAO:0000023] synonym: "dorsal forerunner cells" EXACT [TAO:0000023] -synonym: "forerunner cells" EXACT PLURAL [TAO:0000023] +synonym: "forerunner cells" EXACT OMO:0003004 [TAO:0000023] xref: ZFA:0000023 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -190656,7 +190657,7 @@ name: median fin fold def: "Surface structure that will develop into one of the median fins. Extends from dorsal surface of fish, caudal to the 8th somite, to the ventral surface ending at the caudal side of the vent." [ZFIN:curator] synonym: "median fin" RELATED [TAO:0000040] synonym: "median fin-fold" RELATED [TAO:0000040] -synonym: "median fin-folds" RELATED PLURAL [TAO:0000040] +synonym: "median fin-folds" RELATED OMO:0003004 [TAO:0000040] xref: ZFA:0000040 is_a: UBERON:0003102 ! surface structure relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda @@ -190665,7 +190666,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000043 name: obsolete muscle pioneer somite 1 -synonym: "muscle pioneers somite 1" EXACT PLURAL [TAO:0000043] +synonym: "muscle pioneers somite 1" EXACT OMO:0003004 [TAO:0000043] xref: ZFA:0000043 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -190683,7 +190684,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000052 name: dorsal actinotrichium def: "Actinotrichium which is part of the dorsal fin fold." [TAO:wd] -synonym: "dorsal actinotrichia" EXACT PLURAL [TAO:0000052] +synonym: "dorsal actinotrichia" EXACT OMO:0003004 [TAO:0000052] xref: ZFA:0000052 is_a: UBERON:2000089 ! actinotrichium intersection_of: UBERON:2000089 ! actinotrichium @@ -190705,7 +190706,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000068 name: neural plate proneural cluster -synonym: "neural plate proneural clusters" EXACT PLURAL [TAO:0000068] +synonym: "neural plate proneural clusters" EXACT OMO:0003004 [TAO:0000068] synonym: "proneural cluster" RELATED [TAO:0000068] xref: ZFA:0000068 is_a: UBERON:0002050 ! embryonic structure @@ -190750,7 +190751,7 @@ property_value: somite_number "26" xsd:nonNegativeInteger id: UBERON:2000078 name: ventral actinotrichium def: "Actinotrichium which is part of the ventral fin fold." [TAO:wd] -synonym: "ventral actinotrichia" EXACT PLURAL [TAO:0000078] +synonym: "ventral actinotrichia" EXACT OMO:0003004 [TAO:0000078] xref: ZFA:0000078 is_a: UBERON:2000089 ! actinotrichium intersection_of: UBERON:2000089 ! actinotrichium @@ -190789,7 +190790,7 @@ id: UBERON:2000089 name: actinotrichium def: "Elastoidin fin ray that is slender, sometimes branched distally and present in the embryonic fin fold. Actinotrichia are translucent and exhibit birefringence." [http://purl.obolibrary.org/obo/uberon/tracker/129, PHENOSCAPE:pm] comment: Actinotrichia are required for lepidotrichium development. They are occasionally retained in adult fishes. Further taxon comments from Witten & Huysseune (2007): 'Actinotrichia are found in the embryonic fin fold, along the outer edge of the fin in Actinopterygii, and in the adipose fin in teleosts (Starck 1979; Géraudie and Meunier 1982; Becerra et al. 1983). Only in polypterids has their presence been reported in the joints between adjacent lepidotrichial elements (Géraudie 1988). In the sarcopterygian lineage, actinotrichia are present in coelacanths (Géraudie and Meunier 1980) and in young dipnoans (Arratia et al. 2001).' -synonym: "actinotrichia" EXACT PLURAL [TAO:0000089] +synonym: "actinotrichia" EXACT OMO:0003004 [TAO:0000089] xref: ZFA:0000089 xref: ZFA:0005435 is_a: UBERON:4400006 ! elastoidin fin ray @@ -190818,7 +190819,7 @@ id: UBERON:2000093 name: obsolete blastomere def: "A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995." [ZFIN:curator] comment: Term already present in CL. For the subclasses, see http://purl.obolibrary.org/obo/cl/tracker/18 -synonym: "blastomeres" EXACT PLURAL [TAO:0000093] +synonym: "blastomeres" EXACT OMO:0003004 [TAO:0000093] xref: ZFA:0000093 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -190870,7 +190871,7 @@ def: "Dermal bone that is located dorsal to the preopercle or lies on the antero comment: Synonyms: supraopercle (Roberts 1969) supraopercular bone (Buckup 1998) synonym: "supraopercle" EXACT [TAO:0000104] synonym: "supraopercular bone" EXACT [TAO:0000104] -synonym: "suprapreopercles" EXACT PLURAL [TAO:0000104] +synonym: "suprapreopercles" EXACT OMO:0003004 [TAO:0000104] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -190898,7 +190899,7 @@ id: UBERON:2000120 name: lateral line ganglion def: "Ganglion that develops from a cranial ectodermal placode and contains sensory neurons that innervate a lateral line." [ZFA:0000120, ZFA:curator] subset: efo_slim -synonym: "lateral line ganglia" EXACT PLURAL [TAO:0000120] +synonym: "lateral line ganglia" EXACT OMO:0003004 [TAO:0000120] synonym: "LLG" EXACT OMO:0003000 [TAO:0000120] xref: EFO:0003493 xref: TAO:0000120 @@ -190914,7 +190915,7 @@ id: UBERON:2000125 name: mandibular lateral line neuromast def: "Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast mandibular" EXACT [TAO:0000125] -synonym: "neuromasts mandibular" EXACT PLURAL [TAO:0000125] +synonym: "neuromasts mandibular" EXACT OMO:0003004 [TAO:0000125] xref: ZFA:0000125 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000259 ! mandibular lateral line @@ -190939,7 +190940,7 @@ id: UBERON:2000136 name: otic lateral line neuromast def: "Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast otic" EXACT [TAO:0000136] -synonym: "neuromasts otic" EXACT PLURAL [TAO:0000136] +synonym: "neuromasts otic" EXACT OMO:0003004 [TAO:0000136] xref: ZFA:0000136 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000464 ! otic lateral line @@ -190949,7 +190950,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000139 name: immature otolith def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)." [ZFIN:curator] -synonym: "immature otoliths" EXACT PLURAL [TAO:0000139] +synonym: "immature otoliths" EXACT OMO:0003004 [TAO:0000139] is_a: UBERON:0003103 ! compound organ relationship: part_of UBERON:0003051 ! ear vesicle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -190988,7 +190989,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000165 name: inferior lobe -synonym: "inferior lobes" EXACT PLURAL [TAO:0000165] +synonym: "inferior lobes" EXACT OMO:0003004 [TAO:0000165] xref: ZFA:0000165 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:2000347 ! dorsal zone of median tuberal portion of hypothalamus @@ -191144,7 +191145,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000196 name: dorsal hypohyal bone def: "Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly and the ventral hypohyal bone ventrally." [ZFIN:curator] -synonym: "dorsal hypohyals" EXACT PLURAL [TAO:0000196] +synonym: "dorsal hypohyals" EXACT OMO:0003004 [TAO:0000196] synonym: "dorsohyal" EXACT [TAO:0000196] synonym: "upper hypohyal" EXACT [TAO:0000196] xref: ZFA:0000196 @@ -191227,7 +191228,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000211 name: gill lamella -synonym: "gill lamellae" EXACT PLURAL [TAO:0000211] +synonym: "gill lamellae" EXACT OMO:0003004 [TAO:0000211] xref: ZFA:0000211 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill @@ -191244,7 +191245,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000214 name: hypobranchial vessel -synonym: "hypobranchial vessels" EXACT PLURAL [TAO:0000214] +synonym: "hypobranchial vessels" EXACT OMO:0003004 [TAO:0000214] xref: ZFA:0000214 is_a: UBERON:0001981 ! blood vessel relationship: part_of UBERON:0000948 ! heart @@ -191299,7 +191300,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000225 name: lateral crista primordium -synonym: "lateral crista primordia" EXACT PLURAL [TAO:0000225] +synonym: "lateral crista primordia" EXACT OMO:0003004 [TAO:0000225] xref: ZFA:0000225 is_a: UBERON:0003249 ! epithelium of otic placode relationship: part_of UBERON:0001843 ! lateral semicircular canal @@ -191309,7 +191310,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000226 name: lateral ethmoid bone def: "Endochondral bone that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] -synonym: "lateral ethmoids" EXACT PLURAL [TAO:0000226] +synonym: "lateral ethmoids" EXACT OMO:0003004 [TAO:0000226] synonym: "parethmoïde" EXACT [PSPUB:0000141] synonym: "pleurethmoïde" EXACT [PSPUB:0000134] synonym: "éthmoïde latéral" EXACT [PSPUB:0000164] @@ -191329,7 +191330,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000228 name: lateral line primordium -synonym: "lateral line primordia" EXACT PLURAL [TAO:0000228] +synonym: "lateral line primordia" EXACT OMO:0003004 [TAO:0000228] synonym: "llp" EXACT [TAO:0000228] xref: ZFA:0000228 is_a: UBERON:0000479 ! tissue @@ -191348,7 +191349,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000232 name: lateral semicircular canal primordium -synonym: "lateral semicircular canal primordia" EXACT PLURAL [TAO:0000232] +synonym: "lateral semicircular canal primordia" EXACT OMO:0003004 [TAO:0000232] xref: ZFA:0000232 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal @@ -191409,7 +191410,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000240 name: metapterygoid def: "Endochondral bone that forms the posteriormost element of the palatal complex. It overlies the quadrate and symplectic, posteriorly it articulates with the hyomandibula and anteriorly with the entopterygoid and ectopterygoid. It curves dorsally to form the posteroventral surface of the orbit. The metapterygoid is paired." [ZFIN:curator] -synonym: "metapterygoids" EXACT PLURAL [TAO:0000240] +synonym: "metapterygoids" EXACT OMO:0003004 [TAO:0000240] xref: ZFA:0000240 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage @@ -191453,7 +191454,7 @@ id: UBERON:2000250 name: opercle def: "Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone." [TAO:GA_TG] comment: The opercle is usually a large, flat bone that may be partially covered by the posterior region of the preopercle. -synonym: "opercles" EXACT PLURAL [TAO:0000250] +synonym: "opercles" EXACT OMO:0003004 [TAO:0000250] synonym: "operculare" EXACT [TAO:0000250] synonym: "operculum" EXACT [TAO:0000250] xref: ZFA:0000250 @@ -191505,7 +191506,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000264 name: preopercle def: "Dermal bone that is part of the opercular series and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [TAO:wd] -synonym: "preopercles" EXACT PLURAL [TAO:0000264] +synonym: "preopercles" EXACT OMO:0003004 [TAO:0000264] synonym: "preoperculum" EXACT [TAO:0000264] xref: ZFA:0000264 is_a: UBERON:0008907 ! dermal bone @@ -191564,7 +191565,7 @@ name: radial bone def: "Radial element that is composed of bone tissue." [https://github.com/obophenotype/uberon/issues/251, OBOL:automatic] comment: Radials may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. synonym: "actinost" RELATED [TAO:0000271] -synonym: "radials" EXACT PLURAL [TAO:0000271] +synonym: "radials" EXACT OMO:0003004 [TAO:0000271] xref: ZFA:0000271 intersection_of: UBERON:2100271 ! radial element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -191605,7 +191606,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000281 name: obsolete hair cell posterior macula def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)." [ZFIN:curator] -synonym: "sensory hair cells posterior macula" EXACT PLURAL [TAO:0000281] +synonym: "sensory hair cells posterior macula" EXACT OMO:0003004 [TAO:0000281] xref: ZFA:0000281 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -191621,7 +191622,7 @@ replaced_by: UBERON:0001107 id: UBERON:2000284 name: subopercle def: "Dermal bone that is part of the opercular series, lying below the opercle. The subopercle is paired and is typically a thin bone." [TAO:wd] -synonym: "subopercles" EXACT PLURAL [TAO:0000284] +synonym: "subopercles" EXACT OMO:0003004 [TAO:0000284] xref: ZFA:0000284 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0003113 ! dermatocranium @@ -191735,7 +191736,7 @@ id: UBERON:2000300 name: ventral hypohyal bone def: "Replacement bone that is bilaterally paired and articulates with the ceratohyal bone posteriorly and the dorsal hypohyal bone dorsally." [ZFIN:curator] synonym: "lower hypohyal" EXACT [TAO:0000300] -synonym: "ventral hypohyals" EXACT PLURAL [TAO:0000300] +synonym: "ventral hypohyals" EXACT OMO:0003004 [TAO:0000300] synonym: "ventrohyal" EXACT [TAO:0000300] xref: ZFA:0000300 is_a: UBERON:0002513 ! endochondral bone @@ -191811,7 +191812,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000318 name: brainstem and spinal white matter def: "CNS white matter that is part of the brain stem or spinal cord." [ZFIN] -synonym: "brain stem/spinal tracts and commissures" EXACT PLURAL [TAO:0000318] +synonym: "brain stem/spinal tracts and commissures" EXACT OMO:0003004 [TAO:0000318] xref: ZFA:0000318 is_a: UBERON:0002316 ! white matter property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -191944,7 +191945,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000350 name: epipleural def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [ZFIN:curator] -synonym: "epipleurals" EXACT PLURAL [TAO:0000350] +synonym: "epipleurals" EXACT OMO:0003004 [TAO:0000350] synonym: "pleuroïde" EXACT [PSPUB:0000153] synonym: "épipleural" EXACT [PSPUB:0000164] synonym: "épipleure" EXACT [PSPUB:0000133] @@ -191966,7 +191967,7 @@ name: gill raker def: "Dermal bone that is a projection present on the inner surface of a branchial arch." [ZFIN:curator] synonym: "branchiocténie" EXACT [PSPUB:0000133] synonym: "branchiospine" EXACT [PSPUB:0000164] -synonym: "gill rakers" EXACT PLURAL [TAO:0000356] +synonym: "gill rakers" EXACT OMO:0003004 [TAO:0000356] synonym: "gill-raker" EXACT [TAO:0000356] synonym: "gillraker" EXACT [TAO:0000356] xref: BTO:0002149 {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-4423-4370"} @@ -192008,7 +192009,7 @@ name: hypural def: "Laterally flattened haemal spine of an ural vertebra that lacks its arch and supports a few principal caudal lepidotrichia distally. A hypural may articulate or fuse with its ural centrum proximally or may lie ventral to the notochord. A hypural is an unpaired median bone that ossifies perichondrally. (Modified from Monod, 1968 and Arratia and Schultze, 1992)." [TAO:GA_TG, ZFIN:curator] synonym: "hyp" EXACT [TAO:0000364] synonym: "hypuralia" EXACT [TAO:0000364] -synonym: "hypurals" EXACT PLURAL [TAO:0000364] +synonym: "hypurals" EXACT OMO:0003004 [TAO:0000364] xref: ZFA:0000364 is_a: UBERON:2001364 ! hemal spine relationship: part_of UBERON:2002067 ! upper hypural set @@ -192061,9 +192062,9 @@ name: infraorbital alt_id: UBERON:2000489 def: "Dermal bone that is located anterior, ventral or posterior to the eye. Infraorbital bones may or may not contain the infraorbital sensory canal. Infraorbital bones are numbered starting with the anteriormost element of the series." [ZFIN:curator] synonym: "circumorbital series" EXACT [TAO:0000376] -synonym: "circumorbitals" EXACT PLURAL [TAO:0000376] +synonym: "circumorbitals" EXACT OMO:0003004 [TAO:0000376] synonym: "infraorbital series" RELATED [TAO:0000376] -synonym: "infraorbitals" EXACT PLURAL [TAO:0000376] +synonym: "infraorbitals" EXACT OMO:0003004 [TAO:0000376] xref: ZFA:0000376 is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0001697 ! orbit of skull @@ -192152,7 +192153,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000395 name: obsolete muscle pioneer somite 2 -synonym: "muscle pioneers somite 2" EXACT PLURAL [TAO:0000395] +synonym: "muscle pioneers somite 2" EXACT OMO:0003004 [TAO:0000395] xref: ZFA:0000395 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -192214,7 +192215,7 @@ synonym: "métacleithrum" EXACT [PSPUB:0000131] synonym: "métaclithrum" EXACT [PSPUB:0000131] synonym: "paraclithrum" EXACT [PSPUB:0000143] synonym: "postclavicle" EXACT [TAO:0000410] -synonym: "postcleithra" EXACT PLURAL [TAO:0000410] +synonym: "postcleithra" EXACT OMO:0003004 [TAO:0000410] synonym: "postcleithrum" EXACT [PSPUB:0000164] xref: ZFA:0000410 is_a: UBERON:0008907 ! dermal bone @@ -192224,7 +192225,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000411 name: posterior crista primordium -synonym: "posterior crista primordia" EXACT PLURAL [TAO:0000411] +synonym: "posterior crista primordia" EXACT OMO:0003004 [TAO:0000411] xref: ZFA:0000411 is_a: UBERON:0003249 ! epithelium of otic placode relationship: part_of UBERON:0001842 ! posterior semicircular canal @@ -192233,7 +192234,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000412 name: posterior semicircular canal primordium -synonym: "posterior semicircular canal primordia" EXACT PLURAL [TAO:0000412] +synonym: "posterior semicircular canal primordia" EXACT OMO:0003004 [TAO:0000412] xref: ZFA:0000412 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal @@ -192252,7 +192253,7 @@ id: UBERON:2000419 name: pterosphenoid def: "Endochondral bone that sutures with the orbitosphenoid anteriorly, the frontal bone dorsally and the sphenotic and prootic posteriorly. The pterosphenoid forms part of the orbitosphenoid region. The pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. The pterosphenoid is a paired bone." [ZFIN:curator] synonym: "alisphenoid" EXACT [TAO:0000419] -synonym: "pterosphenoids" EXACT PLURAL [TAO:0000419] +synonym: "pterosphenoids" EXACT OMO:0003004 [TAO:0000419] xref: ZFA:0000419 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:2001515 ! taenia marginalis posterior @@ -192379,7 +192380,7 @@ synonym: "predorsal bone" EXACT [TAO:0000442] synonym: "pseudaxonoste" EXACT [PSPUB:0000156] synonym: "sn" EXACT [TAO:0000442] synonym: "supraneural" EXACT [PSPUB:0000164] -synonym: "supraneurals" EXACT PLURAL [TAO:0000442] +synonym: "supraneurals" EXACT OMO:0003004 [TAO:0000442] xref: ZFA:0000442 intersection_of: UBERON:4300035 ! supraneural element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -192473,7 +192474,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000461 name: Weberian ossicle def: "Bone that is an element associated with a Weberian vertebra." [ZFIN:curator] -synonym: "Weberian ossicles" EXACT PLURAL [TAO:0000461] +synonym: "Weberian ossicles" EXACT OMO:0003004 [TAO:0000461] xref: ZFA:0000461 is_a: UBERON:0000491 ! solid compound organ intersection_of: UBERON:0004765 ! skeletal element @@ -192522,7 +192523,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000468 name: anterior crista primordium -synonym: "anterior crista primordia" EXACT PLURAL [TAO:0000468] +synonym: "anterior crista primordia" EXACT OMO:0003004 [TAO:0000468] xref: ZFA:0000468 is_a: UBERON:0001048 ! primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -192530,7 +192531,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000469 name: anterior semicircular canal primordium -synonym: "anterior semicircular canal primordia" EXACT PLURAL [TAO:0000469] +synonym: "anterior semicircular canal primordia" EXACT OMO:0003004 [TAO:0000469] xref: ZFA:0000469 is_a: UBERON:2002215 ! otic vesicle protrusion relationship: part_of UBERON:0001840 ! semicircular canal @@ -192559,7 +192560,7 @@ id: UBERON:2000476 name: branchiostegal ray def: "Dermal bone that is a flattened element that supports the branchiostegal membrane. Branchiostegal rays are generally present in a series articulating ventrally or ventro-medially with the anterior and posterior ceratobranchials whereas the most posterior ray articulates with the subopercle. The branchiostegal ray is paired." [ZFIN:curator] comment: Although the branchiostegals are articulated or attached to the hyoid arch, they belong to the opercular series. Branchiostegal rays are of variable shape and number and their homology is problematic. Usually they are numbered from anterior to posterior elements, instead from posterior to anteriorly considering that the last element of the series is consistently associated to the subopercle. For a survey of branchiostegal rays see Mc Allister (1968). -synonym: "branchiostegal rays" EXACT PLURAL [TAO:0000476] +synonym: "branchiostegal rays" EXACT OMO:0003004 [TAO:0000476] xref: ZFA:0000476 is_a: UBERON:0008907 ! dermal bone relationship: overlaps UBERON:2001849 ! epihyal-branchiostegal ray joint @@ -192613,7 +192614,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000485 name: central nucleus inferior lobe -synonym: "central nucleus inferior lobes" EXACT PLURAL [TAO:0000485] +synonym: "central nucleus inferior lobes" EXACT OMO:0003004 [TAO:0000485] xref: ZFA:0000485 is_a: UBERON:0006569 ! diencephalic nucleus relationship: part_of UBERON:2000165 ! inferior lobe @@ -192630,7 +192631,7 @@ is_obsolete: true id: UBERON:2000488 name: ceratobranchial bone def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches." [ZFIN:curator] -synonym: "ceratobranchials" EXACT PLURAL [TAO:0000488] +synonym: "ceratobranchials" EXACT OMO:0003004 [TAO:0000488] xref: ZFA:0000488 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001898 ! ceratobranchial element @@ -192713,7 +192714,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000503 name: dorsal oblique branchial muscle -synonym: "dorsal oblique branchial muscles" EXACT PLURAL [TAO:0000503] +synonym: "dorsal oblique branchial muscles" EXACT OMO:0003004 [TAO:0000503] synonym: "obliquues dorsalis" EXACT [https://repository.si.edu/handle/10088/5206] synonym: "obliquus dorsalis" EXACT [] {comment="https://doi.org/10.1093/sysbio/sys060"} xref: ZFA:0000503 @@ -192771,7 +192772,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000513 name: obsolete fast muscle cell somite 1 -synonym: "fast muscle cells somite 1" EXACT PLURAL [TAO:0000513] +synonym: "fast muscle cells somite 1" EXACT OMO:0003004 [TAO:0000513] xref: ZFA:0000513 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -192845,7 +192846,7 @@ name: pharyngobranchial bone def: "Endochondral bone of the branchial arches located medial to the epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial" EXACT [TAO:0000527] synonym: "infrapharyngobranchial bone" EXACT [] -synonym: "pharyngobranchials" EXACT PLURAL [TAO:0000527] +synonym: "pharyngobranchials" EXACT OMO:0003004 [TAO:0000527] xref: ZFA:0000527 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001909 ! pharyngobranchial element @@ -192905,7 +192906,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000541 name: obsolete marginal blastomere def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] -synonym: "marginal blastomeres" EXACT PLURAL [TAO:0000541] +synonym: "marginal blastomeres" EXACT OMO:0003004 [TAO:0000541] xref: ZFA:0000541 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193091,7 +193092,7 @@ name: sphenotic def: "Endochondral bone that sutures with the pterosphenoid anteriorly, the prootic ventrally, the frontal bone dorso-medially, and the pterotic dorso-posteriorly. Occasionally the sphenotic sutures with the parietal bone. The sphenotic separates the orbital from the otic region. The sphenotic bears a large antero-lateral or lateral or ventro-lateral process that borders the postero-dorsal margin of the orbit. The sphenotic is a paired bone." [ZFIN:curator] comment: The lower edge of the sphenotic may contribute to the hyomandibular facet depending on the fish group. synonym: "autosphenotic" EXACT [TAO:0000587] -synonym: "sphenotics" EXACT PLURAL [TAO:0000587] +synonym: "sphenotics" EXACT OMO:0003004 [TAO:0000587] xref: ZFA:0000587 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0006605 ! tectum synoticum @@ -193131,7 +193132,7 @@ name: supracleithrum def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:wd] comment: The dorsalmost postcleithrum or postcleithrum 1 may lie medial to the ventral part of the supracleithrum. The postotic canal or lateral line may run close to the dorsal margin or in the upper third or in the lowest third of the bone depending on the fish group. synonym: "hypercleithrum" EXACT [PSPUB:0000131] -synonym: "supracleithra" EXACT PLURAL [TAO:0000594] +synonym: "supracleithra" EXACT OMO:0003004 [TAO:0000594] synonym: "supracleithrum" EXACT [PSPUB:0000164] synonym: "épiclithrum" EXACT [PSPUB:0000132] xref: ZFA:0000594 @@ -193178,7 +193179,7 @@ id: UBERON:2000602 name: uroneural def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone." [TAO:Arratia_Schultze_1992, TAO:Patterson_1968] comment: The presence of modified ural neural arches or uroneurals is interpreted as a synapomorphy of Teleostei. Uroneurals present some modifications in certain teleost subgroups and such specialized structures are named pleurostyle (e.g., ostarioclupeomorphs) and stegural (e.g., salmonids). -synonym: "uroneurals" EXACT PLURAL [TAO:0000602] +synonym: "uroneurals" EXACT OMO:0003004 [TAO:0000602] xref: ZFA:0000602 is_a: UBERON:0003861 ! neural arch relationship: part_of UBERON:4000167 ! caudal fin skeleton @@ -193189,7 +193190,7 @@ id: UBERON:2000603 name: valvula cerebelli def: "Brain structure which is caudally attached to the rostral medulla oblongata and extends into the tectal ventricle. The valvula cerebelli consists of a granular and a molecular layer along with aggregations of large Purkinje and eurydendroid cells and is uniquely present in ray-finned fishes. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFA:0000603, ZFA:curator] synonym: "valvula" RELATED [ZFA:0000603] -synonym: "valvula cerebellum" EXACT PLURAL [TAO:0000603, ZFA:0000603] +synonym: "valvula cerebellum" EXACT OMO:0003004 [TAO:0000603, ZFA:0000603] xref: TAO:0000603 xref: ZFA:0000603 is_a: UBERON:0002616 ! regional part of brain @@ -193201,7 +193202,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000606 name: obsolete ventral oblique branchial muscle comment: removed axiom: part_of some 'pharyngeal muscle'\nno information about this class, may be zebrafish specific nomenclature. -synonym: "ventral oblique branchial muscles" EXACT PLURAL [TAO:0000606] +synonym: "ventral oblique branchial muscles" EXACT OMO:0003004 [TAO:0000606] xref: ZFA:0000606 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193291,7 +193292,7 @@ name: autopalatine def: "Endochondral bone that is part of the antero-lateral region of the palate. Commonly, it articulates with the maxilla anterolaterally and with the ethmoidal region medially. It may also articulate with the dermopalatine ventro-laterally and with the entopterygoid posteriorly. The autopalatine is paired." [ZFIN:curator] comment: The cartilaginous autopalatine forms from the anterior palatoquadrate arch. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms). synonym: "palatine bone" RELATED [TAO:0000620] -synonym: "palatines" EXACT PLURAL [TAO:0000620] +synonym: "palatines" EXACT OMO:0003004 [TAO:0000620] xref: ZFA:0000620 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage @@ -193305,7 +193306,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000622 name: barbel def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [ZFIN:curator] -synonym: "barbels" EXACT PLURAL [TAO:0000622] +synonym: "barbels" EXACT OMO:0003004 [TAO:0000622] synonym: "barble" EXACT [TAO:0000622] xref: ZFA:0000622 is_a: UBERON:0003102 ! surface structure @@ -193318,7 +193319,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000623 name: basipterygium bone def: "Basipterygium element that is composed of bone tissue." [OBOL:automatic] -synonym: "basipterygia" EXACT PLURAL [TAO:0000623] +synonym: "basipterygia" EXACT OMO:0003004 [TAO:0000623] synonym: "basipterygium ischiatique" EXACT [PSPUB:0000145] synonym: "os pelvien" EXACT [PSPUB:0000164] synonym: "pelvic bone" RELATED [TAO:0000623] @@ -193552,7 +193553,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000658 name: epibranchial bone def: "Dorsal branchial arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone and medially with pharyngobranchial cartilage or bone." [ZFIN:curator] -synonym: "epibranchial bones" EXACT PLURAL [TAO:0000658] +synonym: "epibranchial bones" EXACT OMO:0003004 [TAO:0000658] xref: ZFA:0000658 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2001904 ! epibranchial element @@ -193566,7 +193567,7 @@ def: "A free, modified neural spine of a preural or a ural vertebra that is plac comment: The origin of the epurals is unclear, three hypotheses have been proposed: 1) The epurals are modified radials or dorsal radials; 2) the epurals are detached neural spines and may support fin rays; and 3) the epurals are a serial homologue of the supraneuralia. At least in teleosts the epural is a detached neural spine. For details see Schultze and Arratia (1989) and Arratia and Schultze (1992). synonym: "epiural" EXACT [TAO:0000660] synonym: "epiural apophysis" EXACT [TAO:0000660] -synonym: "epurals" EXACT PLURAL [TAO:0000660] +synonym: "epurals" EXACT OMO:0003004 [TAO:0000660] synonym: "éphural" EXACT [PSPUB:0000138] synonym: "épural" EXACT [PSPUB:0000164] xref: ZFA:0000660 @@ -193600,7 +193601,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000666 name: filamental artery -synonym: "filamental arteries" EXACT PLURAL [TAO:0000666] +synonym: "filamental arteries" EXACT OMO:0003004 [TAO:0000666] xref: ZFA:0000666 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0007303 ! pharyngeal vasculature @@ -193621,7 +193622,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000674 name: interopercle def: "Dermal bone that is part of the opercular series. It is located ventro-medially to the preopercle and anterior to the subopercle. It is joined to the posterior part of the lower jaw (retroarticular) by a ligament. The interopercle is paired." [TAO:wd] -synonym: "interopercles" EXACT PLURAL [TAO:0000674] +synonym: "interopercles" EXACT OMO:0003004 [TAO:0000674] xref: ZFA:0000674 is_a: UBERON:0008907 ! dermal bone relationship: overlaps UBERON:2001710 ! opercle-interopercle joint @@ -193645,7 +193646,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000677 name: segmental intercostal artery subset: efo_slim -synonym: "segmental intercostal arteries" EXACT PLURAL [TAO:0000677] +synonym: "segmental intercostal arteries" EXACT OMO:0003004 [TAO:0000677] xref: EFO:0003558 xref: TAO:0000677 xref: ZFA:0000677 @@ -193655,7 +193656,7 @@ is_a: UBERON:0005612 ! intercostal artery id: UBERON:2000678 name: obsolete hair cell anterior macula def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)." [ZFIN:curator] -synonym: "sensory hair cells anterior macula" EXACT PLURAL [TAO:0000678] +synonym: "sensory hair cells anterior macula" EXACT OMO:0003004 [TAO:0000678] xref: ZFA:0000678 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193679,7 +193680,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000688 name: obsolete olfactory support cell -synonym: "support cells" EXACT PLURAL [TAO:0000688] +synonym: "support cells" EXACT OMO:0003004 [TAO:0000688] xref: ZFA:0000688 is_obsolete: true replaced_by: CL:0000853 @@ -193826,7 +193827,7 @@ id: UBERON:2000711 name: deep cell layer (gastrulation) def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995." [ZFIN:curator] synonym: "DEL" EXACT OMO:0003000 [ZFIN:ZDB-PUB-961014-576] -synonym: "DEL cells" EXACT PLURAL [TAO:0000711] +synonym: "DEL cells" EXACT OMO:0003004 [TAO:0000711] xref: ZFA:0000711 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm @@ -193891,7 +193892,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000719 name: obsolete slow muscle cell somite 21 -synonym: "slow muscle cells somite 21" EXACT PLURAL [TAO:0000719] +synonym: "slow muscle cells somite 21" EXACT OMO:0003004 [TAO:0000719] xref: ZFA:0000719 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193899,7 +193900,7 @@ is_obsolete: true [Term] id: UBERON:2000720 name: obsolete slow muscle cell somite 24 -synonym: "slow muscle cells somite 24" EXACT PLURAL [TAO:0000720] +synonym: "slow muscle cells somite 24" EXACT OMO:0003004 [TAO:0000720] xref: ZFA:0000720 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193907,7 +193908,7 @@ is_obsolete: true [Term] id: UBERON:2000721 name: obsolete slow muscle cell somite 27 -synonym: "slow muscle cells somite 27" EXACT PLURAL [TAO:0000721] +synonym: "slow muscle cells somite 27" EXACT OMO:0003004 [TAO:0000721] xref: ZFA:0000721 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193915,7 +193916,7 @@ is_obsolete: true [Term] id: UBERON:2000722 name: obsolete slow muscle cell somite 3 -synonym: "slow muscle cells somite 3" EXACT PLURAL [TAO:0000722] +synonym: "slow muscle cells somite 3" EXACT OMO:0003004 [TAO:0000722] xref: ZFA:0000722 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193923,7 +193924,7 @@ is_obsolete: true [Term] id: UBERON:2000723 name: obsolete slow muscle cell somite 5 -synonym: "slow muscle cells somite 5" EXACT PLURAL [TAO:0000723] +synonym: "slow muscle cells somite 5" EXACT OMO:0003004 [TAO:0000723] xref: ZFA:0000723 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -193931,7 +193932,7 @@ is_obsolete: true [Term] id: UBERON:2000724 name: obsolete slow muscle cell somite 8 -synonym: "slow muscle cells somite 8" EXACT PLURAL [TAO:0000724] +synonym: "slow muscle cells somite 8" EXACT OMO:0003004 [TAO:0000724] xref: ZFA:0000724 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194023,7 +194024,7 @@ name: preural vertebra def: "Caudal vertebra that is one of the last caudal vertebrae anterior to the ural vertebrae that with its neural and haemal spines supports the procurrent caudal fin rays or lepidotrichia. The numbering of preural vertebrae is from caudal to rostral direction." [TAO:GA_TG] comment: The term preural vertebra was created by Nybelin (1963) for those vertebrae supporting caudal procurrent rays. For additional information see Arratia and Schultze (1992). Their neural and hemal arches may or may not be fused to their corresponding autocentrum. Fusion or separation of certain neural and/or haemal arches of preural centra is characteristic or certain teleosts subgroup. The boundary between preural and ural region is determined by the bifurcation of the four or five blood vessels running inside the hemal arches of the preural vertebrae (primary caudal artery, two secondary arterial trunks, primary caudal vein, and secondary subvertebral vein) (for details see Schultze & Arratia, 1989). The bifurcation of the caudal artery and vein was proposed as a landmark to homologize preural centrum 1 throughout actinopterygians (Nybelin, 1963). synonym: "caudal fin vertebra" EXACT [TAO:0000734] -synonym: "specialized centra/vertebrae" EXACT PLURAL [TAO:0000734] +synonym: "specialized centra/vertebrae" EXACT OMO:0003004 [TAO:0000734] xref: ZFA:0000734 is_a: UBERON:0001095 ! caudal vertebra relationship: part_of UBERON:4000167 ! caudal fin skeleton @@ -194035,7 +194036,7 @@ name: hemal postzygapophysis def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [ZFIN:curator] synonym: "haemal postzygapophysis" EXACT [TAO:0000735] synonym: "hemal postygopophysis" EXACT [TAO:0000735] -synonym: "hemal postzygapophyses" EXACT PLURAL [TAO:0000735] +synonym: "hemal postzygapophyses" EXACT OMO:0003004 [TAO:0000735] xref: ZFA:0000735 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0006065 ! hemal arch @@ -194143,7 +194144,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000750 name: obsolete fast muscle cell somite 10 -synonym: "fast muscle cells somite 10" EXACT PLURAL [TAO:0000750] +synonym: "fast muscle cells somite 10" EXACT OMO:0003004 [TAO:0000750] xref: ZFA:0000750 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194160,7 +194161,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000752 name: obsolete fast muscle cell somite 13 -synonym: "fast muscle cells somite 13" EXACT PLURAL [TAO:0000752] +synonym: "fast muscle cells somite 13" EXACT OMO:0003004 [TAO:0000752] xref: ZFA:0000752 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194168,7 +194169,7 @@ is_obsolete: true [Term] id: UBERON:2000753 name: obsolete fast muscle cell somite 16 -synonym: "fast muscle cells somite 16" EXACT PLURAL [TAO:0000753] +synonym: "fast muscle cells somite 16" EXACT OMO:0003004 [TAO:0000753] xref: ZFA:0000753 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194176,7 +194177,7 @@ is_obsolete: true [Term] id: UBERON:2000754 name: obsolete fast muscle cell somite 19 -synonym: "fast muscle cells somite 19" EXACT PLURAL [TAO:0000754] +synonym: "fast muscle cells somite 19" EXACT OMO:0003004 [TAO:0000754] xref: ZFA:0000754 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194184,7 +194185,7 @@ is_obsolete: true [Term] id: UBERON:2000755 name: obsolete fast muscle cell somite 21 -synonym: "fast muscle cells somite 21" EXACT PLURAL [TAO:0000755] +synonym: "fast muscle cells somite 21" EXACT OMO:0003004 [TAO:0000755] xref: ZFA:0000755 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194192,7 +194193,7 @@ is_obsolete: true [Term] id: UBERON:2000756 name: obsolete fast muscle cell somite 24 -synonym: "fast muscle cells somite 24" EXACT PLURAL [TAO:0000756] +synonym: "fast muscle cells somite 24" EXACT OMO:0003004 [TAO:0000756] xref: ZFA:0000756 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194200,7 +194201,7 @@ is_obsolete: true [Term] id: UBERON:2000757 name: obsolete fast muscle cell somite 27 -synonym: "fast muscle cells somite 27" EXACT PLURAL [TAO:0000757] +synonym: "fast muscle cells somite 27" EXACT OMO:0003004 [TAO:0000757] xref: ZFA:0000757 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194208,7 +194209,7 @@ is_obsolete: true [Term] id: UBERON:2000758 name: obsolete fast muscle cell somite 3 -synonym: "fast muscle cells somite 3" EXACT PLURAL [TAO:0000758] +synonym: "fast muscle cells somite 3" EXACT OMO:0003004 [TAO:0000758] xref: ZFA:0000758 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194216,7 +194217,7 @@ is_obsolete: true [Term] id: UBERON:2000759 name: obsolete fast muscle cell somite 5 -synonym: "fast muscle cells somite 5" EXACT PLURAL [TAO:0000759] +synonym: "fast muscle cells somite 5" EXACT OMO:0003004 [TAO:0000759] xref: ZFA:0000759 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194224,7 +194225,7 @@ is_obsolete: true [Term] id: UBERON:2000760 name: obsolete fast muscle cell somite 8 -synonym: "fast muscle cells somite 8" EXACT PLURAL [TAO:0000760] +synonym: "fast muscle cells somite 8" EXACT OMO:0003004 [TAO:0000760] xref: ZFA:0000760 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194294,7 +194295,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000773 name: obsolete fast muscle cell somite 12 -synonym: "fast muscle cells somite 12" EXACT PLURAL [TAO:0000773] +synonym: "fast muscle cells somite 12" EXACT OMO:0003004 [TAO:0000773] xref: ZFA:0000773 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194338,7 +194339,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000778 name: obsolete interneuron spinal cord -synonym: "interneurons spinal cord" EXACT PLURAL [TAO:0000778] +synonym: "interneurons spinal cord" EXACT OMO:0003004 [TAO:0000778] xref: ZFA:0000778 is_obsolete: true replaced_by: CL:0005000 @@ -194354,7 +194355,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000784 name: obsolete fast muscle cell somite 15 -synonym: "fast muscle cells somite 15" EXACT PLURAL [TAO:0000784] +synonym: "fast muscle cells somite 15" EXACT OMO:0003004 [TAO:0000784] xref: ZFA:0000784 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194370,7 +194371,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000790 name: obsolete muscle pioneer somite 10 -synonym: "muscle pioneers somite 10" EXACT PLURAL [TAO:0000790] +synonym: "muscle pioneers somite 10" EXACT OMO:0003004 [TAO:0000790] xref: ZFA:0000790 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194378,7 +194379,7 @@ is_obsolete: true [Term] id: UBERON:2000791 name: obsolete muscle pioneer somite 13 -synonym: "muscle pioneers somite 13" EXACT PLURAL [TAO:0000791] +synonym: "muscle pioneers somite 13" EXACT OMO:0003004 [TAO:0000791] xref: ZFA:0000791 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194386,7 +194387,7 @@ is_obsolete: true [Term] id: UBERON:2000792 name: obsolete muscle pioneer somite 16 -synonym: "muscle pioneers somite 16" EXACT PLURAL [TAO:0000792] +synonym: "muscle pioneers somite 16" EXACT OMO:0003004 [TAO:0000792] xref: ZFA:0000792 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194394,7 +194395,7 @@ is_obsolete: true [Term] id: UBERON:2000793 name: obsolete muscle pioneer somite 19 -synonym: "muscle pioneers somite 19" EXACT PLURAL [TAO:0000793] +synonym: "muscle pioneers somite 19" EXACT OMO:0003004 [TAO:0000793] xref: ZFA:0000793 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194402,7 +194403,7 @@ is_obsolete: true [Term] id: UBERON:2000794 name: obsolete muscle pioneer somite 22 -synonym: "muscle pioneers somite 22" EXACT PLURAL [TAO:0000794] +synonym: "muscle pioneers somite 22" EXACT OMO:0003004 [TAO:0000794] xref: ZFA:0000794 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194410,7 +194411,7 @@ is_obsolete: true [Term] id: UBERON:2000795 name: obsolete fast muscle cell somite 18 -synonym: "fast muscle cells somite 18" EXACT PLURAL [TAO:0000795] +synonym: "fast muscle cells somite 18" EXACT OMO:0003004 [TAO:0000795] xref: ZFA:0000795 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194418,7 +194419,7 @@ is_obsolete: true [Term] id: UBERON:2000796 name: obsolete muscle pioneer somite 25 -synonym: "muscle pioneers somite 25" EXACT PLURAL [TAO:0000796] +synonym: "muscle pioneers somite 25" EXACT OMO:0003004 [TAO:0000796] xref: ZFA:0000796 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194426,7 +194427,7 @@ is_obsolete: true [Term] id: UBERON:2000797 name: obsolete muscle pioneer somite 28 -synonym: "muscle pioneers somite 28" EXACT PLURAL [TAO:0000797] +synonym: "muscle pioneers somite 28" EXACT OMO:0003004 [TAO:0000797] xref: ZFA:0000797 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194434,7 +194435,7 @@ is_obsolete: true [Term] id: UBERON:2000798 name: obsolete muscle pioneer somite 30 -synonym: "muscle pioneers somite 30" EXACT PLURAL [TAO:0000798] +synonym: "muscle pioneers somite 30" EXACT OMO:0003004 [TAO:0000798] xref: ZFA:0000798 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194442,7 +194443,7 @@ is_obsolete: true [Term] id: UBERON:2000799 name: obsolete muscle pioneer somite 6 -synonym: "muscle pioneers somite 6" EXACT PLURAL [TAO:0000799] +synonym: "muscle pioneers somite 6" EXACT OMO:0003004 [TAO:0000799] xref: ZFA:0000799 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194450,7 +194451,7 @@ is_obsolete: true [Term] id: UBERON:2000800 name: obsolete muscle pioneer somite 9 -synonym: "muscle pioneers somite 9" EXACT PLURAL [TAO:0000800] +synonym: "muscle pioneers somite 9" EXACT OMO:0003004 [TAO:0000800] xref: ZFA:0000800 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194503,7 +194504,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000806 name: obsolete fast muscle cell somite 20 -synonym: "fast muscle cells somite 20" EXACT PLURAL [TAO:0000806] +synonym: "fast muscle cells somite 20" EXACT OMO:0003004 [TAO:0000806] xref: ZFA:0000806 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194549,7 +194550,7 @@ id: UBERON:2000813 name: infraorbital lateral line neuromast def: "Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast infraorbital" EXACT [TAO:0000813] -synonym: "neuromasts infraorbital" EXACT PLURAL [TAO:0000813] +synonym: "neuromasts infraorbital" EXACT OMO:0003004 [TAO:0000813] xref: ZFA:0000813 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:0003094 ! infraorbital lateral line @@ -194560,7 +194561,7 @@ id: UBERON:2000814 name: opercular lateral line neuromast def: "Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast opercular" EXACT [TAO:0000814] -synonym: "neuromasts opercular" EXACT PLURAL [TAO:0000814] +synonym: "neuromasts opercular" EXACT OMO:0003004 [TAO:0000814] xref: ZFA:0000814 is_a: UBERON:0008904 ! neuromast relationship: part_of UBERON:2000424 ! opercular lateral line @@ -194582,7 +194583,7 @@ relationship: part_of UBERON:0001896 {source="ZFA"} ! medulla oblongata [Term] id: UBERON:2000817 name: obsolete fast muscle cell somite 23 -synonym: "fast muscle cells somite 23" EXACT PLURAL [TAO:0000817] +synonym: "fast muscle cells somite 23" EXACT OMO:0003004 [TAO:0000817] xref: ZFA:0000817 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194597,7 +194598,7 @@ is_obsolete: true [Term] id: UBERON:2000820 name: presumptive neuron neural tube -synonym: "presumptive neurons neural tube" EXACT PLURAL [TAO:0000820] +synonym: "presumptive neurons neural tube" EXACT OMO:0003004 [TAO:0000820] xref: ZFA:0000820 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube @@ -194606,7 +194607,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000821 name: obsolete primary neuron hindbrain -synonym: "primary neurons hindbrain" EXACT PLURAL [TAO:0000821] +synonym: "primary neurons hindbrain" EXACT OMO:0003004 [TAO:0000821] xref: ZFA:0000821 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194622,7 +194623,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000827 name: obsolete fast muscle cell somite 26 -synonym: "fast muscle cells somite 26" EXACT PLURAL [TAO:0000827] +synonym: "fast muscle cells somite 26" EXACT OMO:0003004 [TAO:0000827] xref: ZFA:0000827 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194711,7 +194712,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000838 name: obsolete fast muscle cell somite 29 -synonym: "fast muscle cells somite 29" EXACT PLURAL [TAO:0000838] +synonym: "fast muscle cells somite 29" EXACT OMO:0003004 [TAO:0000838] xref: ZFA:0000838 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194728,7 +194729,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000840 name: obsolete slow muscle cell somite 11 -synonym: "slow muscle cells somite 11" EXACT PLURAL [TAO:0000840] +synonym: "slow muscle cells somite 11" EXACT OMO:0003004 [TAO:0000840] xref: ZFA:0000840 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194736,7 +194737,7 @@ is_obsolete: true [Term] id: UBERON:2000841 name: obsolete slow muscle cell somite 14 -synonym: "slow muscle cells somite 14" EXACT PLURAL [TAO:0000841] +synonym: "slow muscle cells somite 14" EXACT OMO:0003004 [TAO:0000841] xref: ZFA:0000841 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194744,7 +194745,7 @@ is_obsolete: true [Term] id: UBERON:2000842 name: obsolete slow muscle cell somite 17 -synonym: "slow muscle cells somite 17" EXACT PLURAL [TAO:0000842] +synonym: "slow muscle cells somite 17" EXACT OMO:0003004 [TAO:0000842] xref: ZFA:0000842 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194752,7 +194753,7 @@ is_obsolete: true [Term] id: UBERON:2000843 name: obsolete slow muscle cell somite 2 -synonym: "slow muscle cells somite 2" EXACT PLURAL [TAO:0000843] +synonym: "slow muscle cells somite 2" EXACT OMO:0003004 [TAO:0000843] xref: ZFA:0000843 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194760,7 +194761,7 @@ is_obsolete: true [Term] id: UBERON:2000844 name: obsolete slow muscle cell somite 22 -synonym: "slow muscle cells somite 22" EXACT PLURAL [TAO:0000844] +synonym: "slow muscle cells somite 22" EXACT OMO:0003004 [TAO:0000844] xref: ZFA:0000844 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194768,7 +194769,7 @@ is_obsolete: true [Term] id: UBERON:2000845 name: obsolete slow muscle cell somite 25 -synonym: "slow muscle cells somite 25" EXACT PLURAL [TAO:0000845] +synonym: "slow muscle cells somite 25" EXACT OMO:0003004 [TAO:0000845] xref: ZFA:0000845 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194776,7 +194777,7 @@ is_obsolete: true [Term] id: UBERON:2000846 name: obsolete slow muscle cell somite 28 -synonym: "slow muscle cells somite 28" EXACT PLURAL [TAO:0000846] +synonym: "slow muscle cells somite 28" EXACT OMO:0003004 [TAO:0000846] xref: ZFA:0000846 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194784,7 +194785,7 @@ is_obsolete: true [Term] id: UBERON:2000847 name: obsolete slow muscle cell somite 30 -synonym: "slow muscle cells somite 30" EXACT PLURAL [TAO:0000847] +synonym: "slow muscle cells somite 30" EXACT OMO:0003004 [TAO:0000847] xref: ZFA:0000847 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194792,7 +194793,7 @@ is_obsolete: true [Term] id: UBERON:2000848 name: obsolete slow muscle cell somite 6 -synonym: "slow muscle cells somite 6" EXACT PLURAL [TAO:0000848] +synonym: "slow muscle cells somite 6" EXACT OMO:0003004 [TAO:0000848] xref: ZFA:0000848 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194800,7 +194801,7 @@ is_obsolete: true [Term] id: UBERON:2000849 name: obsolete fast muscle cell somite 4 -synonym: "fast muscle cells somite 4" EXACT PLURAL [TAO:0000849] +synonym: "fast muscle cells somite 4" EXACT OMO:0003004 [TAO:0000849] xref: ZFA:0000849 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194808,7 +194809,7 @@ is_obsolete: true [Term] id: UBERON:2000850 name: obsolete slow muscle cell somite 9 -synonym: "slow muscle cells somite 9" EXACT PLURAL [TAO:0000850] +synonym: "slow muscle cells somite 9" EXACT OMO:0003004 [TAO:0000850] xref: ZFA:0000850 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -194891,7 +194892,7 @@ name: specialized hemal arch and spine synonym: "ha(pu)" EXACT [TAO:0000859] synonym: "hemal arches (preural)" EXACT [ZFIN:ZDB-PUB-011008-1] synonym: "specialized haemal arch and spine" EXACT [TAO:0000859] -synonym: "specialized hemal arches and spines" EXACT PLURAL [TAO:0000859] +synonym: "specialized hemal arches and spines" EXACT OMO:0003004 [TAO:0000859] xref: ZFA:0000859 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:4000167 ! caudal fin skeleton @@ -194900,7 +194901,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000860 name: obsolete fast muscle cell somite 7 -synonym: "fast muscle cells somite 7" EXACT PLURAL [TAO:0000860] +synonym: "fast muscle cells somite 7" EXACT OMO:0003004 [TAO:0000860] xref: ZFA:0000860 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195006,7 +195007,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000876 name: obsolete fast muscle cell somite 11 -synonym: "fast muscle cells somite 11" EXACT PLURAL [TAO:0000876] +synonym: "fast muscle cells somite 11" EXACT OMO:0003004 [TAO:0000876] xref: ZFA:0000876 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195014,7 +195015,7 @@ is_obsolete: true [Term] id: UBERON:2000877 name: obsolete fast muscle cell somite 14 -synonym: "fast muscle cells somite 14" EXACT PLURAL [TAO:0000877] +synonym: "fast muscle cells somite 14" EXACT OMO:0003004 [TAO:0000877] xref: ZFA:0000877 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195022,7 +195023,7 @@ is_obsolete: true [Term] id: UBERON:2000878 name: obsolete fast muscle cell somite 17 -synonym: "fast muscle cells somite 17" EXACT PLURAL [TAO:0000878] +synonym: "fast muscle cells somite 17" EXACT OMO:0003004 [TAO:0000878] xref: ZFA:0000878 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195030,7 +195031,7 @@ is_obsolete: true [Term] id: UBERON:2000879 name: obsolete fast muscle cell somite 2 -synonym: "fast muscle cells somite 2" EXACT PLURAL [TAO:0000879] +synonym: "fast muscle cells somite 2" EXACT OMO:0003004 [TAO:0000879] xref: ZFA:0000879 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195038,7 +195039,7 @@ is_obsolete: true [Term] id: UBERON:2000880 name: obsolete fast muscle cell somite 22 -synonym: "fast muscle cells somite 22" EXACT PLURAL [TAO:0000880] +synonym: "fast muscle cells somite 22" EXACT OMO:0003004 [TAO:0000880] xref: ZFA:0000880 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195046,7 +195047,7 @@ is_obsolete: true [Term] id: UBERON:2000881 name: obsolete fast muscle cell somite 25 -synonym: "fast muscle cells somite 25" EXACT PLURAL [TAO:0000881] +synonym: "fast muscle cells somite 25" EXACT OMO:0003004 [TAO:0000881] xref: ZFA:0000881 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195054,7 +195055,7 @@ is_obsolete: true [Term] id: UBERON:2000883 name: obsolete fast muscle cell somite 28 -synonym: "fast muscle cells somite 28" EXACT PLURAL [TAO:0000883] +synonym: "fast muscle cells somite 28" EXACT OMO:0003004 [TAO:0000883] xref: ZFA:0000883 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195062,7 +195063,7 @@ is_obsolete: true [Term] id: UBERON:2000884 name: obsolete fast muscle cell somite 30 -synonym: "fast muscle cells somite 30" EXACT PLURAL [TAO:0000884] +synonym: "fast muscle cells somite 30" EXACT OMO:0003004 [TAO:0000884] xref: ZFA:0000884 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195070,7 +195071,7 @@ is_obsolete: true [Term] id: UBERON:2000885 name: obsolete fast muscle cell somite 6 -synonym: "fast muscle cells somite 6" EXACT PLURAL [TAO:0000885] +synonym: "fast muscle cells somite 6" EXACT OMO:0003004 [TAO:0000885] xref: ZFA:0000885 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195078,7 +195079,7 @@ is_obsolete: true [Term] id: UBERON:2000886 name: obsolete fast muscle cell somite 9 -synonym: "fast muscle cells somite 9" EXACT PLURAL [TAO:0000886] +synonym: "fast muscle cells somite 9" EXACT OMO:0003004 [TAO:0000886] xref: ZFA:0000886 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195185,7 +195186,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000902 name: hypural musculature -synonym: "hypural muscles" EXACT PLURAL [TAO:0000902] +synonym: "hypural muscles" EXACT OMO:0003004 [TAO:0000902] xref: ZFA:0000902 is_a: UBERON:0014892 ! skeletal muscle organ relationship: part_of UBERON:2000628 ! caudal fin musculature @@ -195229,7 +195230,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000915 name: obsolete muscle pioneer somite 11 -synonym: "muscle pioneers somite 11" EXACT PLURAL [TAO:0000915] +synonym: "muscle pioneers somite 11" EXACT OMO:0003004 [TAO:0000915] xref: ZFA:0000915 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195237,7 +195238,7 @@ is_obsolete: true [Term] id: UBERON:2000916 name: obsolete muscle pioneer somite 14 -synonym: "muscle pioneers somite 14" EXACT PLURAL [TAO:0000916] +synonym: "muscle pioneers somite 14" EXACT OMO:0003004 [TAO:0000916] xref: ZFA:0000916 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195245,7 +195246,7 @@ is_obsolete: true [Term] id: UBERON:2000917 name: obsolete muscle pioneer somite 17 -synonym: "muscle pioneers somite 17" EXACT PLURAL [TAO:0000917] +synonym: "muscle pioneers somite 17" EXACT OMO:0003004 [TAO:0000917] xref: ZFA:0000917 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195253,7 +195254,7 @@ is_obsolete: true [Term] id: UBERON:2000918 name: obsolete muscle pioneer somite 20 -synonym: "muscle pioneers somite 20" EXACT PLURAL [TAO:0000918] +synonym: "muscle pioneers somite 20" EXACT OMO:0003004 [TAO:0000918] xref: ZFA:0000918 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195261,7 +195262,7 @@ is_obsolete: true [Term] id: UBERON:2000919 name: obsolete muscle pioneer somite 23 -synonym: "muscle pioneers somite 23" EXACT PLURAL [TAO:0000919] +synonym: "muscle pioneers somite 23" EXACT OMO:0003004 [TAO:0000919] xref: ZFA:0000919 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195269,7 +195270,7 @@ is_obsolete: true [Term] id: UBERON:2000920 name: obsolete muscle pioneer somite 26 -synonym: "muscle pioneers somite 26" EXACT PLURAL [TAO:0000920] +synonym: "muscle pioneers somite 26" EXACT OMO:0003004 [TAO:0000920] xref: ZFA:0000920 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195277,7 +195278,7 @@ is_obsolete: true [Term] id: UBERON:2000921 name: obsolete muscle pioneer somite 29 -synonym: "muscle pioneers somite 29" EXACT PLURAL [TAO:0000921] +synonym: "muscle pioneers somite 29" EXACT OMO:0003004 [TAO:0000921] xref: ZFA:0000921 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195285,7 +195286,7 @@ is_obsolete: true [Term] id: UBERON:2000922 name: obsolete muscle pioneer somite 4 -synonym: "muscle pioneers somite 4" EXACT PLURAL [TAO:0000922] +synonym: "muscle pioneers somite 4" EXACT OMO:0003004 [TAO:0000922] xref: ZFA:0000922 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195293,7 +195294,7 @@ is_obsolete: true [Term] id: UBERON:2000923 name: obsolete muscle pioneer somite 7 -synonym: "muscle pioneers somite 7" EXACT PLURAL [TAO:0000923] +synonym: "muscle pioneers somite 7" EXACT OMO:0003004 [TAO:0000923] xref: ZFA:0000923 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195421,7 +195422,7 @@ name: middle lateral line neuromast def: "Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] subset: efo_slim synonym: "neuromast middle" EXACT [TAO:0000939] -synonym: "neuromasts middle" EXACT PLURAL [TAO:0000939] +synonym: "neuromasts middle" EXACT OMO:0003004 [TAO:0000939] xref: EFO:0003592 xref: TAO:0000939 xref: ZFA:0000939 @@ -195433,7 +195434,7 @@ id: UBERON:2000940 name: posterior lateral line neuromast def: "Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)." [ZFIN:curator] synonym: "neuromast posterior" EXACT [TAO:0000940] -synonym: "neuromasts posterior" EXACT PLURAL [TAO:0000940] +synonym: "neuromasts posterior" EXACT OMO:0003004 [TAO:0000940] xref: ZFA:0000940 is_a: UBERON:0008904 ! neuromast relationship: develops_from UBERON:2001157 ! posterior lateral line primordium @@ -195576,7 +195577,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000963 name: obsolete slow muscle cell somite 1 -synonym: "slow muscle cells somite 1" EXACT PLURAL [TAO:0000963] +synonym: "slow muscle cells somite 1" EXACT OMO:0003004 [TAO:0000963] xref: ZFA:0000963 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195584,7 +195585,7 @@ is_obsolete: true [Term] id: UBERON:2000964 name: obsolete slow muscle cell somite 12 -synonym: "slow muscle cells somite 12" EXACT PLURAL [TAO:0000964] +synonym: "slow muscle cells somite 12" EXACT OMO:0003004 [TAO:0000964] xref: ZFA:0000964 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195592,7 +195593,7 @@ is_obsolete: true [Term] id: UBERON:2000965 name: obsolete slow muscle cell somite 15 -synonym: "slow muscle cells somite 15" EXACT PLURAL [TAO:0000965] +synonym: "slow muscle cells somite 15" EXACT OMO:0003004 [TAO:0000965] xref: ZFA:0000965 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195600,7 +195601,7 @@ is_obsolete: true [Term] id: UBERON:2000966 name: obsolete slow muscle cell somite 18 -synonym: "slow muscle cells somite 18" EXACT PLURAL [TAO:0000966] +synonym: "slow muscle cells somite 18" EXACT OMO:0003004 [TAO:0000966] xref: ZFA:0000966 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195608,7 +195609,7 @@ is_obsolete: true [Term] id: UBERON:2000967 name: obsolete slow muscle cell somite 20 -synonym: "slow muscle cells somite 20" EXACT PLURAL [TAO:0000967] +synonym: "slow muscle cells somite 20" EXACT OMO:0003004 [TAO:0000967] xref: ZFA:0000967 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195625,7 +195626,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000969 name: obsolete slow muscle cell somite 23 -synonym: "slow muscle cells somite 23" EXACT PLURAL [TAO:0000969] +synonym: "slow muscle cells somite 23" EXACT OMO:0003004 [TAO:0000969] xref: ZFA:0000969 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195633,7 +195634,7 @@ is_obsolete: true [Term] id: UBERON:2000970 name: obsolete slow muscle cell somite 26 -synonym: "slow muscle cells somite 26" EXACT PLURAL [TAO:0000970] +synonym: "slow muscle cells somite 26" EXACT OMO:0003004 [TAO:0000970] xref: ZFA:0000970 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195641,7 +195642,7 @@ is_obsolete: true [Term] id: UBERON:2000971 name: obsolete slow muscle cell somite 29 -synonym: "slow muscle cells somite 29" EXACT PLURAL [TAO:0000971] +synonym: "slow muscle cells somite 29" EXACT OMO:0003004 [TAO:0000971] xref: ZFA:0000971 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195649,7 +195650,7 @@ is_obsolete: true [Term] id: UBERON:2000972 name: obsolete slow muscle cell somite 4 -synonym: "slow muscle cells somite 4" EXACT PLURAL [TAO:0000972] +synonym: "slow muscle cells somite 4" EXACT OMO:0003004 [TAO:0000972] xref: ZFA:0000972 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195657,7 +195658,7 @@ is_obsolete: true [Term] id: UBERON:2000973 name: obsolete slow muscle cell somite 7 -synonym: "slow muscle cells somite 7" EXACT PLURAL [TAO:0000973] +synonym: "slow muscle cells somite 7" EXACT OMO:0003004 [TAO:0000973] xref: ZFA:0000973 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195847,7 +195848,7 @@ is_obsolete: true [Term] id: UBERON:2001003 name: obsolete muscle pioneer somite 12 -synonym: "muscle pioneers somite 12" EXACT PLURAL [TAO:0001003] +synonym: "muscle pioneers somite 12" EXACT OMO:0003004 [TAO:0001003] xref: ZFA:0001003 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195855,7 +195856,7 @@ is_obsolete: true [Term] id: UBERON:2001004 name: obsolete muscle pioneer somite 15 -synonym: "muscle pioneers somite 15" EXACT PLURAL [TAO:0001004] +synonym: "muscle pioneers somite 15" EXACT OMO:0003004 [TAO:0001004] xref: ZFA:0001004 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195863,7 +195864,7 @@ is_obsolete: true [Term] id: UBERON:2001005 name: obsolete muscle pioneer somite 18 -synonym: "muscle pioneers somite 18" EXACT PLURAL [TAO:0001005] +synonym: "muscle pioneers somite 18" EXACT OMO:0003004 [TAO:0001005] xref: ZFA:0001005 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195871,7 +195872,7 @@ is_obsolete: true [Term] id: UBERON:2001006 name: obsolete muscle pioneer somite 21 -synonym: "muscle pioneers somite 21" EXACT PLURAL [TAO:0001006] +synonym: "muscle pioneers somite 21" EXACT OMO:0003004 [TAO:0001006] xref: ZFA:0001006 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195879,7 +195880,7 @@ is_obsolete: true [Term] id: UBERON:2001007 name: obsolete muscle pioneer somite 24 -synonym: "muscle pioneers somite 24" EXACT PLURAL [TAO:0001007] +synonym: "muscle pioneers somite 24" EXACT OMO:0003004 [TAO:0001007] xref: ZFA:0001007 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195887,7 +195888,7 @@ is_obsolete: true [Term] id: UBERON:2001008 name: obsolete muscle pioneer somite 27 -synonym: "muscle pioneers somite 27" EXACT PLURAL [TAO:0001008] +synonym: "muscle pioneers somite 27" EXACT OMO:0003004 [TAO:0001008] xref: ZFA:0001008 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195895,7 +195896,7 @@ is_obsolete: true [Term] id: UBERON:2001009 name: obsolete muscle pioneer somite 3 -synonym: "muscle pioneers somite 3" EXACT PLURAL [TAO:0001009] +synonym: "muscle pioneers somite 3" EXACT OMO:0003004 [TAO:0001009] xref: ZFA:0001009 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195903,7 +195904,7 @@ is_obsolete: true [Term] id: UBERON:2001010 name: obsolete muscle pioneer somite 5 -synonym: "muscle pioneers somite 5" EXACT PLURAL [TAO:0001010] +synonym: "muscle pioneers somite 5" EXACT OMO:0003004 [TAO:0001010] xref: ZFA:0001010 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -195911,7 +195912,7 @@ is_obsolete: true [Term] id: UBERON:2001011 name: obsolete muscle pioneer somite 8 -synonym: "muscle pioneers somite 8" EXACT PLURAL [TAO:0001011] +synonym: "muscle pioneers somite 8" EXACT OMO:0003004 [TAO:0001011] xref: ZFA:0001011 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -196030,7 +196031,7 @@ name: occipital lateral line neuromast def: "A neuromast that is part of the occipital lateral line." [ZFIN:curator] subset: efo_slim synonym: "neuromast occipital" EXACT [TAO:0001025] -synonym: "neuromasts occipital" EXACT PLURAL [TAO:0001025] +synonym: "neuromasts occipital" EXACT OMO:0003004 [TAO:0001025] xref: EFO:0003606 xref: TAO:0001025 xref: ZFA:0001025 @@ -196043,7 +196044,7 @@ name: supraorbital lateral line neuromast def: "A neuromast that is part of the supraorbital lateral line." [ZFIN:curator] subset: efo_slim synonym: "neuromast supraorbital" EXACT [TAO:0001026] -synonym: "neuromasts supraorbital" EXACT PLURAL [TAO:0001026] +synonym: "neuromasts supraorbital" EXACT OMO:0003004 [TAO:0001026] xref: EFO:0003607 xref: TAO:0001026 xref: ZFA:0001026 @@ -196055,7 +196056,7 @@ id: UBERON:2001028 name: hypurapophysis def: "Lateral process, spine-like or crest-like, at the lateral wall of the haemal arch of the parhypural that serves for insertion of the hypochordal longitudinal muscle. The process may contribute to the lateral protection of the parhypural foramen (where the caudal blood vessels exit the hemal arch) and the hypural foramen (where a caudal heart may be present). The hypurapophysis is paired." [ZFIN:curator] comment: The structure, the processus parhypurale, was given the name of hypurapophysis by Nursall (1963). Additional processes may be present on the lateral walls of hypurals 1 and 2 in some teleost subgroups. They are named primary, secondary hypurapophyses, etc. -synonym: "hypurapophyses" EXACT PLURAL [TAO:0001028] +synonym: "hypurapophyses" EXACT OMO:0003004 [TAO:0001028] synonym: "parhypurapophyses" EXACT [TAO:0001028] synonym: "parhypurapophyses processes" EXACT [TAO:0001028] xref: ZFA:0001028 @@ -196174,7 +196175,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001047 name: obsolete slow muscle cell somite 10 -synonym: "slow muscle cells somite 10" EXACT PLURAL [TAO:0001047] +synonym: "slow muscle cells somite 10" EXACT OMO:0003004 [TAO:0001047] xref: ZFA:0001047 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -196182,7 +196183,7 @@ is_obsolete: true [Term] id: UBERON:2001048 name: obsolete slow muscle cell somite 13 -synonym: "slow muscle cells somite 13" EXACT PLURAL [TAO:0001048] +synonym: "slow muscle cells somite 13" EXACT OMO:0003004 [TAO:0001048] xref: ZFA:0001048 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -196190,7 +196191,7 @@ is_obsolete: true [Term] id: UBERON:2001049 name: obsolete slow muscle cell somite 16 -synonym: "slow muscle cells somite 16" EXACT PLURAL [TAO:0001049] +synonym: "slow muscle cells somite 16" EXACT OMO:0003004 [TAO:0001049] xref: ZFA:0001049 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -196198,7 +196199,7 @@ is_obsolete: true [Term] id: UBERON:2001050 name: obsolete slow muscle cell somite 19 -synonym: "slow muscle cells somite 19" EXACT PLURAL [TAO:0001050] +synonym: "slow muscle cells somite 19" EXACT OMO:0003004 [TAO:0001050] xref: ZFA:0001050 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -196350,7 +196351,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001086 name: obsolete muscle pioneer comment: this class and all children are being obsoleted from uberon because they were unnecessarily generalized into TAO and because they are cell types. -synonym: "muscle pioneers" EXACT PLURAL [TAO:0001086] +synonym: "muscle pioneers" EXACT OMO:0003004 [TAO:0001086] synonym: "non migratory adaxial cells" EXACT [TAO:0001086] xref: ZFA:0001086 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -196375,7 +196376,7 @@ is_obsolete: true id: UBERON:2001095 name: immature macula def: "An otic sensory epithelium that will develop into the mature macula." [ZFA:0001095] -synonym: "immature maculae" EXACT PLURAL [TAO:0001095] +synonym: "immature maculae" EXACT OMO:0003004 [TAO:0001095] synonym: "immature sensory patch" EXACT [TAO:0001095] synonym: "immature sensory patches" EXACT [TAO:0001095] xref: ZFA:0001095 @@ -196400,7 +196401,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001098 name: obsolete immature hair cell anterior macula -synonym: "immature sensory hair cells anterior macula" EXACT PLURAL [TAO:0001098] +synonym: "immature sensory hair cells anterior macula" EXACT OMO:0003004 [TAO:0001098] xref: ZFA:0001098 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -196408,7 +196409,7 @@ is_obsolete: true [Term] id: UBERON:2001099 name: obsolete immature hair cell posterior macula -synonym: "immature sensory hair cells posterior macula" EXACT PLURAL [TAO:0001099] +synonym: "immature sensory hair cells posterior macula" EXACT OMO:0003004 [TAO:0001099] xref: ZFA:0001099 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -196442,7 +196443,7 @@ synonym: "anal papilla" EXACT [TAO:0001118] synonym: "anal papillae" EXACT [TAO:0001118] synonym: "genital papilla" EXACT [TAO:0001118] synonym: "UGP" EXACT [TAO:0001118] -synonym: "urogenital papillae" EXACT PLURAL [TAO:0001118] +synonym: "urogenital papillae" EXACT OMO:0003004 [TAO:0001118] xref: ZFA:0001118 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000990 ! reproductive system @@ -196481,7 +196482,7 @@ id: UBERON:2001126 name: noninvoluting endocytic marginal cell cluster def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996." [ZFIN:curator] synonym: "NEM" EXACT [TAO:0001126] -synonym: "noninvoluting endocytic marginal cells" EXACT PLURAL [TAO:0001126] +synonym: "noninvoluting endocytic marginal cells" EXACT OMO:0003004 [TAO:0001126] xref: ZFA:0001126 is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0004879 ! marginal zone of embryo @@ -196652,7 +196653,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001157 name: posterior lateral line primordium def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001." [ZFIN:curator] -synonym: "posterior lateral line primordia" EXACT PLURAL [TAO:0001157] +synonym: "posterior lateral line primordia" EXACT OMO:0003004 [TAO:0001157] xref: ZFA:0001157 is_a: UBERON:2000228 ! lateral line primordium relationship: develops_from UBERON:2001156 ! posterior lateral line placode @@ -196823,7 +196824,7 @@ id: UBERON:2001190 name: Weberian vertebra def: "Vertebra that is part of the Weberian apparatus." [ZFIN:curator] comment: Weberian vertebra are usually vertebra 1-4. Present in Otophysi. -synonym: "Weberian vertebrae" EXACT PLURAL [TAO:0001190] +synonym: "Weberian vertebrae" EXACT OMO:0003004 [TAO:0001190] xref: ZFA:0001190 is_a: UBERON:4300223 ! precaudal vertebra relationship: part_of UBERON:2001188 ! Weberian apparatus @@ -196896,7 +196897,7 @@ id: UBERON:2001220 name: basibranchial copula def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton." [ZFIN:curator] synonym: "copula" RELATED [TAO:0001220] -synonym: "copulae" RELATED PLURAL [TAO:0001220] +synonym: "copulae" RELATED OMO:0003004 [TAO:0001220] xref: ZFA:0001220 is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -197201,7 +197202,7 @@ id: UBERON:2001251 name: pharyngobranchial 4 cartilage def: "Most posterior pharyngobranchial cartilage, located medial to the epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial 4 cartilage" EXACT [TAO:0001251] -synonym: "infrapharyngobranchials" EXACT PLURAL [TAO:0001251] +synonym: "infrapharyngobranchials" EXACT OMO:0003004 [TAO:0001251] xref: ZFA:0001251 is_a: UBERON:2001533 ! pharyngobranchial cartilage is_a: UBERON:2001913 ! pharyngobranchial 4 element @@ -197230,7 +197231,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001254 name: abdominal scute series -synonym: "abdominal scutes" EXACT PLURAL [TAO:0001254] +synonym: "abdominal scutes" EXACT OMO:0003004 [TAO:0001254] intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001547 ! abdominal scute property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -197292,7 +197293,7 @@ id: UBERON:2001269 name: regenerating fin/limb def: "Fin or limb undergoing the process of regeneration." [https://orcid.org/0000-0002-6601-2165] subset: efo_slim -synonym: "regenerating fins" NARROW PLURAL [ZFA:0001269] +synonym: "regenerating fins" NARROW OMO:0003004 [ZFA:0001269] xref: EFO:0003657 xref: TAO:0001269 xref: ZFA:0001269 @@ -197363,7 +197364,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001285 name: obsolete intersegmental vessel -synonym: "intersegmental vessels" EXACT PLURAL [TAO:0001285] +synonym: "intersegmental vessels" EXACT OMO:0003004 [TAO:0001285] synonym: "intersomitic vessels" EXACT [TAO:0001285] synonym: "Se" EXACT [TAO:0001285] xref: ZFA:0001285 @@ -197489,7 +197490,7 @@ id: UBERON:2001316 name: anterior lateral line placode def: "Dorsolateral placode that gives rise to the anterior lateral line." [ZFA:0001316, ZFA:curator] subset: efo_slim -synonym: "anterior lateral line placodes" RELATED PLURAL [ZFA:0001316] +synonym: "anterior lateral line placodes" RELATED OMO:0003004 [ZFA:0001316] synonym: "pre-auditory lateral line placode" RELATED [XAO:0004221] xref: EFO:0003461 xref: TAO:0001316 @@ -197706,7 +197707,7 @@ id: UBERON:2001373 name: obsolete migratory slow muscle precursor cell def: "Cells that initially are located adjacent to the spinal cord and notochord along that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [ZFIN:curator] comment: likely very zebrafish specific so being obsoleted for now. -synonym: "migratory slow muscle precursor cells" EXACT PLURAL [TAO:0001373] +synonym: "migratory slow muscle precursor cells" EXACT OMO:0003004 [TAO:0001373] xref: ZFA:0001373 is_obsolete: true @@ -197759,7 +197760,7 @@ id: UBERON:2001391 name: anterior lateral line ganglion def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] subset: efo_slim -synonym: "anterior lateral line ganglia" RELATED PLURAL [TAO:0001391] +synonym: "anterior lateral line ganglia" RELATED OMO:0003004 [TAO:0001391] xref: EFO:0003683 xref: TAO:0001391 xref: ZFA:0001391 @@ -197894,7 +197895,7 @@ name: epiotic alt_id: UBERON:2000659 def: "Endochondral bone that borders that medial edge of the posttemporal fossa. The epiotics are sutured to parietals and supraoccipital dorsally, the exoccipitals ventrally and the pterotics laterally. The epiotic is a paired bone." [ZFIN:curator] synonym: "epioccipital" EXACT [TAO:0001412] -synonym: "epioccipitals" EXACT PLURAL [TAO:0001412] +synonym: "epioccipitals" EXACT OMO:0003004 [TAO:0001412] xref: ZFA:0001412 is_a: UBERON:0002513 ! endochondral bone relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule @@ -197934,7 +197935,7 @@ relationship: develops_from UBERON:2201417 ! pelvic fin distal radial cartilage id: UBERON:2001418 name: obsolete dorsal fin lepidotrichium def: "Lepidotrichium which is part of the dorsal fin." [ZFIN:curator] -synonym: "dorsal fin lepidotrichia" EXACT PLURAL [TAO:0001418] +synonym: "dorsal fin lepidotrichia" EXACT OMO:0003004 [TAO:0001418] synonym: "dorsal fin ray" EXACT [TAO:0001418] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -197944,7 +197945,7 @@ replaced_by: UBERON:4000177 id: UBERON:2001419 name: dorsal fin pterygiophore def: "A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18." [ZFIN:curator] -synonym: "dorsal fin pterygiophores" EXACT PLURAL [TAO:0001419] +synonym: "dorsal fin pterygiophores" EXACT OMO:0003004 [TAO:0001419] synonym: "dorsal fin support" EXACT [TAO:0001419] xref: ZFA:0001419 is_a: UBERON:0000477 ! anatomical cluster @@ -197955,7 +197956,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001420 name: anal fin pterygiophore def: "A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21." [ZFIN:curator] -synonym: "anal fin pterygiophores" EXACT PLURAL [TAO:0001420] +synonym: "anal fin pterygiophores" EXACT OMO:0003004 [TAO:0001420] xref: ZFA:0001420 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:4000166 ! anal fin skeleton @@ -197965,7 +197966,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001421 name: obsolete anal fin lepidotrichium def: "Lepidotrichium which is part of the anal fin." [ZFIN:curator] -synonym: "anal fin lepidotrichia" EXACT PLURAL [TAO:0001421] +synonym: "anal fin lepidotrichia" EXACT OMO:0003004 [TAO:0001421] synonym: "anal fin ray" EXACT [TAO:0001421] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -198079,7 +198080,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2001462 name: obsolete somite border -synonym: "somite border cell" EXACT PLURAL [TAO:0001462] +synonym: "somite border cell" EXACT OMO:0003004 [TAO:0001462] xref: ZFA:0001462 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -198091,7 +198092,7 @@ name: melanophore stripe synonym: "bar" EXACT [] synonym: "melanophore bar" EXACT [] synonym: "stripe" EXACT [TAO:0001463] -synonym: "stripes" EXACT PLURAL [TAO:0001463] +synonym: "stripes" EXACT OMO:0003004 [TAO:0001463] xref: ZFA:0001463 is_a: UBERON:2002284 ! body marking property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -198589,7 +198590,7 @@ id: UBERON:2001551 name: obsolete pectoral fin lepidotrichium def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally." [TAO:GA_TG, ZFIN:curator] comment: Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. -synonym: "pectoral fin lepidotrichia" EXACT PLURAL [TAO:0001551] +synonym: "pectoral fin lepidotrichia" EXACT OMO:0003004 [TAO:0001551] synonym: "pectoral fin ray" EXACT [TAO:0001551] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -198599,7 +198600,7 @@ replaced_by: UBERON:4000175 id: UBERON:2001552 name: obsolete pelvic fin lepidotrichium def: "Lepidotrichium which is part of the pelvic fin." [ZFIN:curator] -synonym: "pelvic fin lepidotrichia" EXACT PLURAL [TAO:0001552] +synonym: "pelvic fin lepidotrichia" EXACT OMO:0003004 [TAO:0001552] synonym: "pelvic fin ray" EXACT [TAO:0001552] property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -199042,7 +199043,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001622 name: odontode def: "Multi-tissue structure composed of enameloid and dentine surrounding a pulp cavity, and found either attached to dermal bone or freely in the skin." [TAO:wd] -synonym: "odontodes" EXACT PLURAL [TAO:0001622] +synonym: "odontodes" EXACT OMO:0003004 [TAO:0001622] is_a: UBERON:0000481 ! multi-tissue structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -199281,7 +199282,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001661 name: basibranchial tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchials 1-3." [TAO:wd] -synonym: "basibranchial 1-3 toothplates" EXACT PLURAL [TAO:0001661] +synonym: "basibranchial 1-3 toothplates" EXACT OMO:0003004 [TAO:0001661] synonym: "basibranchial toothplate" EXACT [TAO:0001661] is_a: UBERON:2001647 ! pharyngeal tooth plate relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -199361,8 +199362,8 @@ id: UBERON:2001675 name: mesethmoid cornu def: "Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft." [TAO:pem] synonym: "cornu" EXACT [TAO:0001675] -synonym: "cornua" EXACT PLURAL [TAO:0001675] -synonym: "cornuae" EXACT PLURAL [TAO:0001675] +synonym: "cornua" EXACT OMO:0003004 [TAO:0001675] +synonym: "cornuae" EXACT OMO:0003004 [TAO:0001675] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0011238 ! mesethmoid bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -199952,7 +199953,7 @@ id: UBERON:2001744 name: replacement tooth trench def: "Anatomical space within a bone in which teeth develop." [TAO:wd] synonym: "replacement tooth crypt" EXACT [TAO:0001744] -synonym: "replacement tooth crypts" EXACT PLURAL [TAO:0001744] +synonym: "replacement tooth crypts" EXACT OMO:0003004 [TAO:0001744] is_a: UBERON:0000464 ! anatomical space property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -200747,7 +200748,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001840 name: tip def: "Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage." [TAO:wd] -synonym: "tips" EXACT PLURAL [TAO:0001840] +synonym: "tips" EXACT OMO:0003004 [TAO:0001840] is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0004529 ! anatomical projection property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -201265,7 +201266,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001904 name: epibranchial element def: "Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element." [TAO:wd] -synonym: "epibranchial elements" EXACT PLURAL [TAO:0001904] +synonym: "epibranchial elements" EXACT OMO:0003004 [TAO:0001904] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002102 ! epibranchial series property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -201859,7 +201860,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2001977 name: pad def: "Surface structure that is a portion of the integument thickened relative to surrounding area." [TAO:wd] -synonym: "pads" EXACT PLURAL [TAO:0001977] +synonym: "pads" EXACT OMO:0003004 [TAO:0001977] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002199 ! integument property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -202020,7 +202021,7 @@ id: UBERON:2001995 name: papilla def: "Surface structure that is a small, fleshy protuberance." [TAO:wd] synonym: "dermal papilla" RELATED [TAO:0001995] -synonym: "papillae" EXACT PLURAL [TAO:0001995] +synonym: "papillae" EXACT OMO:0003004 [TAO:0001995] is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -202482,7 +202483,7 @@ replaced_by: CHEBI:133299 id: UBERON:2002051 name: scale circulus def: "Fine ridge on surface of scale, often parallel to the circumference of scale." [TAO:wd] -synonym: "circuli" EXACT PLURAL [TAO:0002051] +synonym: "circuli" EXACT OMO:0003004 [TAO:0002051] synonym: "crétule" EXACT [PSPUB:0000149] xref: ZFA:0005499 is_a: UBERON:0006800 ! anatomical line @@ -202752,7 +202753,7 @@ id: UBERON:2002082 name: basal fulcrum def: "Fulcrum that is large, laterally expanded, paired or unpaired, scale-like, and that precedes the base of a fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:GA_TG] comment: Basal fulcra may precede the median fins or both of the paired and median fins. Basal fulcra may be lanceolate, leaf-like or arrow-like in shape. The series of basal fulcra may be formed by unpaired plus paired elements depending on the fish group. Most teleosts lack basal fulcra. For additional information on basal fulcra see Arratia (2008, 2009). -synonym: "basal fulcra" EXACT PLURAL [TAO:0002082] +synonym: "basal fulcra" EXACT OMO:0003004 [TAO:0002082] is_a: UBERON:2002291 ! fulcrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -202760,7 +202761,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002083 name: fringing fulcrum def: "Fulcrum that is a small, paired dermal structure associated with the marginal, leading rays of paired and/or unpaired fins. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] -synonym: "fringing fulcra" EXACT PLURAL [TAO:0002083] +synonym: "fringing fulcra" EXACT OMO:0003004 [TAO:0002083] is_a: UBERON:2002291 ! fulcrum property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -202910,7 +202911,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002102 name: epibranchial series def: "Anatomical cluster that consists of the epibranchial elements within an individual." [TAO:wd] -synonym: "epibranchials" EXACT PLURAL [TAO:0002102] +synonym: "epibranchials" EXACT OMO:0003004 [TAO:0002102] is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001904 ! epibranchial element @@ -202999,7 +203000,7 @@ id: UBERON:2002114 name: cotylephore def: "Multi-tissue structure that is a transient outgrowth of tissue on skin brooding fish that acts as an attachment site for embryos." [TAO:wd] comment: Definition reference: James Wetzel, John P. Wourms and John Friel 1997. Comparative morphology of cotylephores in Platystacus and Solenostomus: modifications of the integument for egg attachment in skin-brooding fishes. Environmental Biology of Fishes. Volume 50, Number 1 / September, 1997. Pages 13 - 25. -synonym: "cotylephores" EXACT PLURAL [TAO:0002114] +synonym: "cotylephores" EXACT OMO:0003004 [TAO:0002114] is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000990 ! reproductive system property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203029,7 +203030,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002118 name: scale radius def: "Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli." [ISBN-10:0226870138] -synonym: "radii" EXACT PLURAL [TAO:0002118] +synonym: "radii" EXACT OMO:0003004 [TAO:0002118] is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007380 ! dermal scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203101,7 +203102,7 @@ id: UBERON:2002127 name: myorhabdoid bone def: "Intermuscular bone that is located in the dorsal and ventral forward flexures of the myoseptum." [TAO:wd] comment: Definition reference:\nPatterson, C., Johnson, G.D. 1995. The intermuscular bones and ligaments of teleostean fishes. Smithosonian Contributions to Zoology 559:1-85. -synonym: "myorhabdoi" EXACT PLURAL [TAO:0002127] +synonym: "myorhabdoi" EXACT OMO:0003004 [TAO:0002127] is_a: UBERON:2000526 ! intermuscular bone property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203245,7 +203246,7 @@ id: UBERON:2002159 name: caudal basal fulcrum def: "Basal fulcrum that precedes a caudal fin lobe. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:GA_TG] comment: Caudal basal fulcra precede the bases of both lobes of the caudal fin or only the dorsal one in basal teleosts. Most teleosts lack basal fulcra on the caudal fin. For additional information on basal fulcra see Arratia (2008, 2009). -synonym: "caudal basal fulcra" EXACT PLURAL [TAO:0002159] +synonym: "caudal basal fulcra" EXACT OMO:0003004 [TAO:0002159] is_a: UBERON:2002082 ! basal fulcrum relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203289,7 +203290,7 @@ name: caudal principal ray set def: "Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones." [TAO:GA_TG] comment: In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). The presence of marginal principal caudal rays as long or longer than the branched-and-segmented principal rays is a synapomorphy of teleosts (Arratia, 2008, 2009). synonym: "branched caudal rays" EXACT [TAO:0002164] -synonym: "caudal principal lepidotrichia" EXACT PLURAL [TAO:0002164] +synonym: "caudal principal lepidotrichia" EXACT OMO:0003004 [TAO:0002164] is_a: UBERON:0000477 ! anatomical cluster relationship: composed_primarily_of UBERON:2001585 ! caudal principal ray relationship: part_of UBERON:4000167 ! caudal fin skeleton @@ -203511,7 +203512,7 @@ id: UBERON:2002213 name: obsolete optic nerve head def: "Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye." [ZFIN:curator] comment: removed axiom: part_of some 'cranial nerve II' -synonym: "optic nerve heads" EXACT PLURAL [TAO:0002213] +synonym: "optic nerve heads" EXACT OMO:0003004 [TAO:0002213] xref: ZFA:0001625 is_obsolete: true replaced_by: UBERON:0001783 @@ -203552,7 +203553,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002218 name: parallel fiber, teleost def: "A parallel fiber results from the axon of a cerebellar granule cell ascending through the molecular layer where it does not bifurcate and synapses on the dendritic branches of Purkinje cells and stellate cells. The parallel fibers in teleost fish do not bifurcate in contrast to other vertebrates." [doi:10.1007/978-94-007-1333-8_63] -synonym: "parallel fibers" EXACT PLURAL [TAO:0002218] +synonym: "parallel fibers" EXACT OMO:0003004 [TAO:0002218] xref: ZFA:0001713 is_a: UBERON:0000479 ! tissue is_a: UBERON:0700019 ! parallel fiber @@ -203602,7 +203603,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002225 name: posterior pronephric duct -synonym: "posterior pronephric ducts" EXACT PLURAL [TAO:0002225] +synonym: "posterior pronephric ducts" EXACT OMO:0003004 [TAO:0002225] xref: ZFA:0001623 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0003060 ! pronephric duct @@ -203693,7 +203694,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2002249 name: ctenius -synonym: "ctenii" EXACT PLURAL [TAO:0002249] +synonym: "ctenii" EXACT OMO:0003004 [TAO:0002249] is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:2002273 ! ctenoid scale property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203919,7 +203920,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002283 name: melanophore spot synonym: "spot" EXACT [TAO:0002283] -synonym: "spots" EXACT PLURAL [TAO:0002283] +synonym: "spots" EXACT OMO:0003004 [TAO:0002283] is_a: UBERON:2002284 ! body marking property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203927,7 +203928,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002284 name: body marking def: "Surface structure that is a visible mark on the body resulting from pigmentation." [TAO:wd] -synonym: "markings" EXACT PLURAL [TAO:0002284] +synonym: "markings" EXACT OMO:0003004 [TAO:0002284] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002199 ! integument property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203976,9 +203977,9 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002292 name: epaxial basal fulcrum def: "Basal fulcrum that is positioned at the dorsal or anterodorsal margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] -synonym: "dorsal basal fulcra" RELATED PLURAL [TAO:0002292] +synonym: "dorsal basal fulcra" RELATED OMO:0003004 [TAO:0002292] synonym: "dorsal basal fulcrum" EXACT [TAO:0002292] -synonym: "epaxial basal fulcra" RELATED PLURAL [TAO:0002292] +synonym: "epaxial basal fulcra" RELATED OMO:0003004 [TAO:0002292] is_a: UBERON:2002082 ! basal fulcrum relationship: part_of UBERON:4000167 ! caudal fin skeleton property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -203987,8 +203988,8 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2002293 name: hypaxial basal fulcrum def: "Basal fulcrum that is positioned at the anteroventral margin of the caudal fin. Arratia, G. 2009. Identifying patterns of diversity of the actinopterygian fulcra. Acta Zoologica (Stockholm) 90 (Suppl. 1): 220-235." [PSPUB:0000171, TAO:wd] -synonym: "hypaxial basal fulcra" EXACT PLURAL [TAO:0002293] -synonym: "ventral basal fulcra" EXACT PLURAL [TAO:0002293] +synonym: "hypaxial basal fulcra" EXACT OMO:0003004 [TAO:0002293] +synonym: "ventral basal fulcra" EXACT OMO:0003004 [TAO:0002293] synonym: "ventral basal fulcrum" EXACT [TAO:0002293] is_a: UBERON:2002082 ! basal fulcrum relationship: part_of UBERON:4000167 ! caudal fin skeleton @@ -204039,7 +204040,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005012 name: afferent filamental artery synonym: "AFA" EXACT [TAO:0005012] -synonym: "afferent filamental arteries" EXACT PLURAL [TAO:0005012] +synonym: "afferent filamental arteries" EXACT OMO:0003004 [TAO:0005012] xref: ZFA:0005012 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:2000666 ! filamental artery @@ -204061,7 +204062,7 @@ id: UBERON:2005014 name: recurrent branch afferent branchial artery def: "The anterioventral proceeding branch of the afferent branchial artery. Isogai et al. 2001." [ZFIN:curator] synonym: "RCB" EXACT [TAO:0005014] -synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL [TAO:0005014] +synonym: "recurrent branch afferent branchial arteries" EXACT OMO:0003004 [TAO:0005014] xref: ZFA:0005014 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:2000716 ! afferent portion of pharyngeal arch artery @@ -204070,7 +204071,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005015 name: afferent lamellar arteriole -synonym: "afferent lamellar arterioles" EXACT PLURAL [TAO:0005015] +synonym: "afferent lamellar arterioles" EXACT OMO:0003004 [TAO:0005015] synonym: "AFL" EXACT [TAO:0005015] xref: ZFA:0005015 is_a: UBERON:0001637 ! artery @@ -204101,7 +204102,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2005019 name: efferent lamellar arteriole -synonym: "efferent lamellar arterioles" EXACT PLURAL [TAO:0005019] +synonym: "efferent lamellar arterioles" EXACT OMO:0003004 [TAO:0005019] synonym: "ELA" EXACT [TAO:0005019] xref: ZFA:0005019 is_a: UBERON:0001637 ! artery @@ -204557,7 +204558,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005100 name: intervessel commissure def: "Vessels that travel between artery and veins or vein and vein in a single ray." [ZFIN:curator] -synonym: "intervessel comisures" EXACT PLURAL [TAO:0005100] +synonym: "intervessel comisures" EXACT OMO:0003004 [TAO:0005100] xref: ZFA:0005100 is_a: UBERON:0007304 ! appendage vasculature relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda @@ -204567,7 +204568,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005101 name: interray vessel def: "Vessels that travel between veins in adjacent rays." [ZFIN:curator] -synonym: "interray vessels" EXACT PLURAL [TAO:0005101] +synonym: "interray vessels" EXACT OMO:0003004 [TAO:0005101] xref: ZFA:0005101 is_a: UBERON:0007304 ! appendage vasculature relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda @@ -204627,7 +204628,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005115 name: primary posterior lateral line primordium def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [ZFIN:curator] -synonym: "primary posterior lateral line primordia" EXACT PLURAL [TAO:0005115] +synonym: "primary posterior lateral line primordia" EXACT OMO:0003004 [TAO:0005115] synonym: "primI" EXACT [TAO:0005115] xref: ZFA:0005115 is_a: UBERON:2001157 ! posterior lateral line primordium @@ -204638,7 +204639,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005116 name: secondary posterior lateral line primordium def: "Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction." [ZFIN:curator] -synonym: "secondary posterior lateral line primordia" EXACT PLURAL [TAO:0005116] +synonym: "secondary posterior lateral line primordia" EXACT OMO:0003004 [TAO:0005116] xref: ZFA:0005116 is_a: UBERON:2001157 ! posterior lateral line primordium property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -204647,7 +204648,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005117 name: anterior lateral line primordium def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [ZFIN:curator] -synonym: "anterior lateral line primordia" EXACT PLURAL [TAO:0005117] +synonym: "anterior lateral line primordia" EXACT OMO:0003004 [TAO:0005117] xref: ZFA:0005117 is_a: UBERON:2000228 ! lateral line primordium relationship: part_of UBERON:2001468 ! anterior lateral line system @@ -204657,7 +204658,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005118 name: middle lateral line primordium def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [ZFIN:curator] -synonym: "middle lateral line primordia" EXACT PLURAL [TAO:0005118] +synonym: "middle lateral line primordia" EXACT OMO:0003004 [TAO:0005118] xref: ZFA:0005118 is_a: UBERON:2000228 ! lateral line primordium relationship: part_of UBERON:2005114 ! middle lateral line system @@ -204667,7 +204668,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2005119 name: barbel primordium def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [ZFIN:curator] -synonym: "barbel primordia" EXACT PLURAL [TAO:0005119] +synonym: "barbel primordia" EXACT OMO:0003004 [TAO:0005119] xref: ZFA:0005119 is_a: UBERON:0003102 ! surface structure property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -205345,7 +205346,7 @@ id: UBERON:2005246 name: obsolete regeneration fibroblast def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [ZFIN:curator] synonym: "blastemal fibroblast" EXACT [TAO:0005246] -synonym: "blastemal fibroblasts" EXACT PLURAL [TAO:0005246] +synonym: "blastemal fibroblasts" EXACT OMO:0003004 [TAO:0005246] xref: ZFA:0005246 property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} is_obsolete: true @@ -206025,7 +206026,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007008 name: ventral intermandibularis anterior -synonym: "ventral intermandibulari anterior" EXACT PLURAL [TAO:0007008] +synonym: "ventral intermandibulari anterior" EXACT OMO:0003004 [TAO:0007008] xref: ZFA:0007008 is_a: UBERON:0014892 ! skeletal muscle organ relationship: develops_from UBERON:0010931 ! intermandibularis @@ -206270,7 +206271,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007048 name: ventral intermandibularis posterior -synonym: "ventral intermandibulari posterior" EXACT PLURAL [TAO:0007048] +synonym: "ventral intermandibulari posterior" EXACT OMO:0003004 [TAO:0007048] xref: ZFA:0007048 is_a: UBERON:0014892 ! skeletal muscle organ relationship: develops_from UBERON:0010931 ! intermandibularis @@ -206286,7 +206287,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007051 name: ventral interhyoideus -synonym: "ventral interhyoidei" EXACT PLURAL [TAO:0007051] +synonym: "ventral interhyoidei" EXACT OMO:0003004 [TAO:0007051] xref: ZFA:0007051 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -206295,7 +206296,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2007052 name: hyohyoideus def: "Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure." [ZFIN:ZDB-PUB-020703-2] -synonym: "hyohyoidei" EXACT PLURAL [TAO:0007052] +synonym: "hyohyoidei" EXACT OMO:0003004 [TAO:0007052] xref: ZFA:0007052 is_a: UBERON:0005493 ! hyoid muscle property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -206360,7 +206361,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2007062 name: olfactory field -synonym: "olfactory fields" EXACT PLURAL [TAO:0007062] +synonym: "olfactory fields" EXACT OMO:0003004 [TAO:0007062] xref: ZFA:0007062 is_a: UBERON:2007059 ! neurogenic field property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -206389,7 +206390,7 @@ name: radial element def: "Radial elements are the internal skeletal supports of the median and paired fins." [TAO:wd] comment: Radial elements may be cartilaginous or bony; always present at the base of fins; typically support lepidotrichia. synonym: "actinost" RELATED [TAO:0000271] -synonym: "radials" RELATED PLURAL [TAO:0000271] +synonym: "radials" RELATED OMO:0003004 [TAO:0000271] is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:4440008 ! fin radial skeleton @@ -206408,7 +206409,7 @@ relationship: part_of UBERON:4440010 ! pelvic fin radial skeleton id: UBERON:2100623 name: basipterygium element def: "Endochondral element that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:wd] -synonym: "basipterygia" RELATED PLURAL [TAO:0000623] +synonym: "basipterygia" RELATED OMO:0003004 [TAO:0000623] synonym: "basipterygium" RELATED [] synonym: "basiptrygium ischiatique" RELATED [PSPUB:0000145] synonym: "os pelvien" RELATED [PSPUB:0000164] @@ -206712,7 +206713,7 @@ is_obsolete: true id: UBERON:2200623 name: obsolete basipterygium cartilage def: "Basipterygium element that is composed of cartilage tissue." [OBOL:automatic] -synonym: "basipterygia" EXACT PLURAL [TAO:0000623] +synonym: "basipterygia" EXACT OMO:0003004 [TAO:0000623] synonym: "basiptrygium ischiatique" EXACT [PSPUB:0000145] synonym: "os pelvien" EXACT [PSPUB:0000164] synonym: "pelvic cartilage" RELATED [TAO:0000623] @@ -210611,7 +210612,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010058 name: dermal annular fold def: "A dermal fold surrounding the body reflecting body segmentation. Found in Caecilians." [ISBN:080184780X] -synonym: "annuli" BROAD PLURAL [AAO:0010058] +synonym: "annuli" BROAD OMO:0003004 [AAO:0010058] synonym: "annulus" BROAD [] synonym: "caecilian annulus" EXACT [] is_a: UBERON:3000977 ! body external integument structure @@ -212032,7 +212033,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010458 name: suprarostral ala synonym: "ala" BROAD [] -synonym: "alae" RELATED PLURAL [] +synonym: "alae" RELATED OMO:0003004 [] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000998 ! suprarostral cartilage property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -214108,7 +214109,7 @@ id: UBERON:4000160 name: anocleithrum def: "Dermal bone of pectoral girdle that is dorsal to and articulates with the cleithrum." [VSAO:curator] comment: In sarcopterygians; analogous in position to postcleithrum in actinopterygians. -synonym: "anocleithra" EXACT PLURAL [VSAO:0000160] +synonym: "anocleithra" EXACT OMO:0003004 [VSAO:0000160] is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: provenance_notes "This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/vsao.owl"} @@ -214223,7 +214224,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000173 name: pelvic fin lepidotrichium def: "Lepidotrichium that is part of the pelvic fin skeleton." [TAO:curator] -synonym: "pelvic fin lepidotrichia" EXACT PLURAL [VSAO:0000173] +synonym: "pelvic fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000173] synonym: "pelvic fin ray" NARROW [VSAO:0000173] xref: ZFA:0001552 intersection_of: UBERON:4000172 ! lepidotrichium @@ -214247,7 +214248,7 @@ id: UBERON:4000175 name: pectoral fin lepidotrichium def: "Lepidotrichium that is part of the pectoral fin skeleton." [TAO:curator] comment: Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. -synonym: "pectoral fin lepidotrichia" EXACT PLURAL [VSAO:0000175] +synonym: "pectoral fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000175] synonym: "pectoral fin ray" NARROW [VSAO:0000175] xref: ZFA:0001551 intersection_of: UBERON:4000172 ! lepidotrichium @@ -214259,7 +214260,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000176 name: anal fin lepidotrichium def: "Lepidotrichium that is part of the anal fin skeleton." [TAO:curator] -synonym: "anal fin lepidotrichia" EXACT PLURAL [VSAO:0000176] +synonym: "anal fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000176] synonym: "anal fin ray" NARROW [VSAO:0000176] xref: ZFA:0001421 intersection_of: UBERON:4000172 ! lepidotrichium @@ -214271,7 +214272,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000177 name: dorsal fin lepidotrichium def: "Lepidotrichium that is part of the dorsal fin skeleton." [TAO:curator] -synonym: "dorsal fin lepidotrichia" EXACT PLURAL [VSAO:0000177] +synonym: "dorsal fin lepidotrichia" EXACT OMO:0003004 [VSAO:0000177] synonym: "dorsal fin ray" NARROW [VSAO:0000177] xref: ZFA:0001418 intersection_of: UBERON:4000172 ! lepidotrichium @@ -217015,7 +217016,7 @@ id: UBERON:4300174 name: actinopterygian pyloric caecum def: "A finger-like out-pocketing of the intestine where it meets the end of the stomach (pylorus). Also spelled cecum (ceca). Serves to aid digestion." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "pyloric appendage" EXACT [TAO:0002253] -synonym: "pyloric caeca" EXACT PLURAL [] +synonym: "pyloric caeca" EXACT OMO:0003004 [] synonym: "pyloric caecum" EXACT [] xref: TAO:0002253 is_a: UBERON:0009854 ! digestive tract diverticulum @@ -217157,7 +217158,7 @@ relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires id: UBERON:4300195 name: rostral tubule def: "Consists of a set of tubuli occupying the space between the external dermal bones above the dorsal and anterior wal of the nasal capsule below. Thomson and Campbell (1971)." [PHENOSCAPE:AD] -synonym: "rostral tubuli" EXACT PLURAL [] +synonym: "rostral tubuli" EXACT OMO:0003004 [] is_a: UBERON:0000481 ! multi-tissue structure [Term] @@ -217171,7 +217172,7 @@ relationship: part_of UBERON:0001677 ! sphenoid bone id: UBERON:4300197 name: Westoll line def: "More or less concentric lines of discontinuity in the cosmine of Dipnoi, probably due to cyclic resorption and redeposition during growth occurring on the bases of individual scales and also as large structures between headshield plates.[Fishbase]." [https://www.fishbase.de/glossary/Glossary.php?q=Westoll+lines] -synonym: "Westoll lines" EXACT PLURAL [] +synonym: "Westoll lines" EXACT OMO:0003004 [] is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:4000087 ! cosmine @@ -221388,8 +221389,8 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk id: UBERON:7500108 name: cheek tooth def: "Any of the post-canine teeth, which are the multicuspidate molars or premolars used for shearing and grinding food in mammals." [Wikipedia:Cheek_teeth] -synonym: "cheek teeth" RELATED PLURAL [] -synonym: "cheekteeth" RELATED PLURAL [] +synonym: "cheek teeth" RELATED OMO:0003004 [] +synonym: "cheekteeth" RELATED OMO:0003004 [] synonym: "cheektooth" EXACT [] is_a: UBERON:0013164 ! molariform tooth relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 @@ -222026,8 +222027,8 @@ name: fimbria of uterine tube def: "A fringe of tissue around the ostium of the fallopian tube, in the direction of the ovary." [WikipediaVersioned:Fallopian_tube&oldid=998395727] subset: added_for_HCA synonym: "fimbria of fallopian tube" EXACT [] -synonym: "fimbriae of fallopian tube" EXACT PLURAL [] -synonym: "fimbriae of uterine tube" EXACT PLURAL [] +synonym: "fimbriae of fallopian tube" EXACT OMO:0003004 [] +synonym: "fimbriae of uterine tube" EXACT OMO:0003004 [] xref: FMA:18308 xref: http://orcid.org/0000-0001-7505-5418 is_a: UBERON:0013515 ! subdivision of oviduct @@ -224581,7 +224582,7 @@ id: UBERON:8600020 name: placental septum def: "An extension of the basal plate that protrudes into the intervillous space, creating a system of grooves which delimit elevated areas, also known as cotyledons or maternal lobes." [doi:10.1007/978-3-030-84725-8, PMID:32108320] synonym: "placenta septum" EXACT [PMID:35190336] -synonym: "placental septa" RELATED PLURAL [doi:10.1007/BF00406305] +synonym: "placental septa" RELATED OMO:0003004 [doi:10.1007/BF00406305] is_a: UBERON:0003037 ! septum relationship: adjacent_to UBERON:0010008 ! placental cotyledon relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -224602,7 +224603,7 @@ id: UBERON:8600022 name: pulmonary interlobular septum def: "A septum that surrounds and gives shape to the secondary pulmonary lobules, it is composed of connective tissue within which run the pulmonary venules and lymphatic vessels." [doi:10.53347/rID-8764, PMID:22283705, PMID:3259815] synonym: "interlobular interstitium" RELATED [doi:10.53347/rID-8764] -synonym: "interlobular septa" BROAD PLURAL [PMID:3259815] +synonym: "interlobular septa" BROAD OMO:0003004 [PMID:3259815] synonym: "interlobular septum" BROAD [doi:10.53347/rID-8764] is_a: UBERON:0000114 ! lung connective tissue is_a: UBERON:0003037 ! septum