diff --git a/src/ontology/bridge/cl-bridge-to-aeo.owl b/src/ontology/bridge/cl-bridge-to-aeo.owl
index 9426368fd5..32c06f80c8 100644
--- a/src/ontology/bridge/cl-bridge-to-aeo.owl
+++ b/src/ontology/bridge/cl-bridge-to-aeo.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/cl-bridge-to-caro.owl b/src/ontology/bridge/cl-bridge-to-caro.owl
index b260a901fa..77fb4c8286 100644
--- a/src/ontology/bridge/cl-bridge-to-caro.owl
+++ b/src/ontology/bridge/cl-bridge-to-caro.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl
index 31ea8f25f0..f250b41a94 100644
--- a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl
+++ b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Jonathan Bard
CL editors
Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA.
diff --git a/src/ontology/bridge/cl-bridge-to-emapa.owl b/src/ontology/bridge/cl-bridge-to-emapa.owl
index c1035a220f..bfe82426ae 100644
--- a/src/ontology/bridge/cl-bridge-to-emapa.owl
+++ b/src/ontology/bridge/cl-bridge-to-emapa.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Anne Niknejad
Aurelie Comte
CL editors
diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.owl b/src/ontology/bridge/cl-bridge-to-fbbt.owl
index cc6dead2b0..5321aefc35 100644
--- a/src/ontology/bridge/cl-bridge-to-fbbt.owl
+++ b/src/ontology/bridge/cl-bridge-to-fbbt.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
David Osumi-Sutherland
CL editors
Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and CL.
diff --git a/src/ontology/bridge/cl-bridge-to-fma.owl b/src/ontology/bridge/cl-bridge-to-fma.owl
index d2a8c89968..76593639a0 100644
--- a/src/ontology/bridge/cl-bridge-to-fma.owl
+++ b/src/ontology/bridge/cl-bridge-to-fma.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Onard Mejino
Terry Hayamizu
CL editors
diff --git a/src/ontology/bridge/cl-bridge-to-go.owl b/src/ontology/bridge/cl-bridge-to-go.owl
index c3578c02aa..d81d57bafa 100644
--- a/src/ontology/bridge/cl-bridge-to-go.owl
+++ b/src/ontology/bridge/cl-bridge-to-go.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/cl-bridge-to-kupo.owl b/src/ontology/bridge/cl-bridge-to-kupo.owl
index edaa2c8263..c7702f940d 100644
--- a/src/ontology/bridge/cl-bridge-to-kupo.owl
+++ b/src/ontology/bridge/cl-bridge-to-kupo.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/cl-bridge-to-ma.owl b/src/ontology/bridge/cl-bridge-to-ma.owl
index ea36874cd8..d0acf6b6f9 100644
--- a/src/ontology/bridge/cl-bridge-to-ma.owl
+++ b/src/ontology/bridge/cl-bridge-to-ma.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
George Gkoutos
CL editors
Terry Hayamizu
diff --git a/src/ontology/bridge/cl-bridge-to-ncit.owl b/src/ontology/bridge/cl-bridge-to-ncit.owl
index c114cd84dd..368290803b 100644
--- a/src/ontology/bridge/cl-bridge-to-ncit.owl
+++ b/src/ontology/bridge/cl-bridge-to-ncit.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/cl-bridge-to-sctid.owl b/src/ontology/bridge/cl-bridge-to-sctid.owl
index 87dd3f132a..b73af9f582 100644
--- a/src/ontology/bridge/cl-bridge-to-sctid.owl
+++ b/src/ontology/bridge/cl-bridge-to-sctid.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
OBOL
CL editors
Rough subclass axioms between SNOMED-CT and CL. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree.
diff --git a/src/ontology/bridge/cl-bridge-to-wbbt.owl b/src/ontology/bridge/cl-bridge-to-wbbt.owl
index 6df881dc1a..b840b1b01d 100644
--- a/src/ontology/bridge/cl-bridge-to-wbbt.owl
+++ b/src/ontology/bridge/cl-bridge-to-wbbt.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/cl-bridge-to-xao.owl b/src/ontology/bridge/cl-bridge-to-xao.owl
index 777acd94e7..6afb767916 100644
--- a/src/ontology/bridge/cl-bridge-to-xao.owl
+++ b/src/ontology/bridge/cl-bridge-to-xao.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Erik Segerdell
VG Ponferrada
CL editors
diff --git a/src/ontology/bridge/cl-bridge-to-zfa.owl b/src/ontology/bridge/cl-bridge-to-zfa.owl
index abf6e65bc3..f8ca32f854 100644
--- a/src/ontology/bridge/cl-bridge-to-zfa.owl
+++ b/src/ontology/bridge/cl-bridge-to-zfa.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Melissa Haendel
Veri Van Slyke
Yvonne Bradford
diff --git a/src/ontology/bridge/uberon-bridge-to-aeo.owl b/src/ontology/bridge/uberon-bridge-to-aeo.owl
index 573d7187d1..a45576b332 100644
--- a/src/ontology/bridge/uberon-bridge-to-aeo.owl
+++ b/src/ontology/bridge/uberon-bridge-to-aeo.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-bfo.owl b/src/ontology/bridge/uberon-bridge-to-bfo.owl
index 95f5f1dd3c..2e3429c863 100644
--- a/src/ontology/bridge/uberon-bridge-to-bfo.owl
+++ b/src/ontology/bridge/uberon-bridge-to-bfo.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-caro.owl b/src/ontology/bridge/uberon-bridge-to-caro.owl
index d46b0558c5..d6f0d891d0 100644
--- a/src/ontology/bridge/uberon-bridge-to-caro.owl
+++ b/src/ontology/bridge/uberon-bridge-to-caro.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-dhba.owl b/src/ontology/bridge/uberon-bridge-to-dhba.owl
index 5beedc2e37..46b3a3bf89 100644
--- a/src/ontology/bridge/uberon-bridge-to-dhba.owl
+++ b/src/ontology/bridge/uberon-bridge-to-dhba.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl
index 352d5e5f1a..e44e3d604b 100644
--- a/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl
+++ b/src/ontology/bridge/uberon-bridge-to-ehdaa2.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Jonathan Bard
Uberon editors
Equivalence axioms between EHDAA2 and Uberon. EHDAA2 replaces EHDAA.
diff --git a/src/ontology/bridge/uberon-bridge-to-emapa.owl b/src/ontology/bridge/uberon-bridge-to-emapa.owl
index c6f6fcbf99..31f49ab610 100644
--- a/src/ontology/bridge/uberon-bridge-to-emapa.owl
+++ b/src/ontology/bridge/uberon-bridge-to-emapa.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Anne Niknejad
Aurelie Comte
Uberon editors
diff --git a/src/ontology/bridge/uberon-bridge-to-fbbt.owl b/src/ontology/bridge/uberon-bridge-to-fbbt.owl
index 97319ed7ee..cd0f9a52a0 100644
--- a/src/ontology/bridge/uberon-bridge-to-fbbt.owl
+++ b/src/ontology/bridge/uberon-bridge-to-fbbt.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
David Osumi-Sutherland
Uberon editors
Taxonomic equivalence axioms between the Drosophila Anatomy Ontology and Uberon.
diff --git a/src/ontology/bridge/uberon-bridge-to-fbdv.owl b/src/ontology/bridge/uberon-bridge-to-fbdv.owl
index d871e37dec..27c1503f55 100644
--- a/src/ontology/bridge/uberon-bridge-to-fbdv.owl
+++ b/src/ontology/bridge/uberon-bridge-to-fbdv.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-fma.owl b/src/ontology/bridge/uberon-bridge-to-fma.owl
index e2b38bb801..92f1e63712 100644
--- a/src/ontology/bridge/uberon-bridge-to-fma.owl
+++ b/src/ontology/bridge/uberon-bridge-to-fma.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Onard Mejino
Terry Hayamizu
Uberon editors
diff --git a/src/ontology/bridge/uberon-bridge-to-go.owl b/src/ontology/bridge/uberon-bridge-to-go.owl
index 2b328e6260..c986c89f85 100644
--- a/src/ontology/bridge/uberon-bridge-to-go.owl
+++ b/src/ontology/bridge/uberon-bridge-to-go.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-hao.owl b/src/ontology/bridge/uberon-bridge-to-hao.owl
index 3bfed3665a..3bfa2c223c 100644
--- a/src/ontology/bridge/uberon-bridge-to-hao.owl
+++ b/src/ontology/bridge/uberon-bridge-to-hao.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-hba.owl b/src/ontology/bridge/uberon-bridge-to-hba.owl
index 8884b58c90..af1641ff8b 100644
--- a/src/ontology/bridge/uberon-bridge-to-hba.owl
+++ b/src/ontology/bridge/uberon-bridge-to-hba.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl
index 4bed7882ce..05176875ee 100644
--- a/src/ontology/bridge/uberon-bridge-to-hsapdv.owl
+++ b/src/ontology/bridge/uberon-bridge-to-hsapdv.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-kupo.owl b/src/ontology/bridge/uberon-bridge-to-kupo.owl
index cf00856d3b..cf6d0c2dfd 100644
--- a/src/ontology/bridge/uberon-bridge-to-kupo.owl
+++ b/src/ontology/bridge/uberon-bridge-to-kupo.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-ma.owl b/src/ontology/bridge/uberon-bridge-to-ma.owl
index da76843038..1e7ccf46ac 100644
--- a/src/ontology/bridge/uberon-bridge-to-ma.owl
+++ b/src/ontology/bridge/uberon-bridge-to-ma.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
George Gkoutos
Terry Hayamizu
Uberon editors
diff --git a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl
index 266e52323c..8642b49afa 100644
--- a/src/ontology/bridge/uberon-bridge-to-mmusdv.owl
+++ b/src/ontology/bridge/uberon-bridge-to-mmusdv.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-ncit.owl b/src/ontology/bridge/uberon-bridge-to-ncit.owl
index bf757a6a2f..f084fac245 100644
--- a/src/ontology/bridge/uberon-bridge-to-ncit.owl
+++ b/src/ontology/bridge/uberon-bridge-to-ncit.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-oges.owl b/src/ontology/bridge/uberon-bridge-to-oges.owl
index d9df65eac7..4d6be5a094 100644
--- a/src/ontology/bridge/uberon-bridge-to-oges.owl
+++ b/src/ontology/bridge/uberon-bridge-to-oges.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-pba.owl b/src/ontology/bridge/uberon-bridge-to-pba.owl
index 7998a41d4b..ab61bcf7c1 100644
--- a/src/ontology/bridge/uberon-bridge-to-pba.owl
+++ b/src/ontology/bridge/uberon-bridge-to-pba.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-sctid.owl b/src/ontology/bridge/uberon-bridge-to-sctid.owl
index 130d6df796..ab649e1abb 100644
--- a/src/ontology/bridge/uberon-bridge-to-sctid.owl
+++ b/src/ontology/bridge/uberon-bridge-to-sctid.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
OBOL
Uberon editors
Rough subclass axioms between SNOMED-CT and Uberon. Note that SNOMED is not open, unlike other ontologies used in bridges here. Consequently, the mappings here are not verified to the same degree.
diff --git a/src/ontology/bridge/uberon-bridge-to-spd.owl b/src/ontology/bridge/uberon-bridge-to-spd.owl
index 47a56aebe0..de196d6b63 100644
--- a/src/ontology/bridge/uberon-bridge-to-spd.owl
+++ b/src/ontology/bridge/uberon-bridge-to-spd.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-tads.owl b/src/ontology/bridge/uberon-bridge-to-tads.owl
index 63b841ec78..789c5cfaca 100644
--- a/src/ontology/bridge/uberon-bridge-to-tads.owl
+++ b/src/ontology/bridge/uberon-bridge-to-tads.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-tgma.owl b/src/ontology/bridge/uberon-bridge-to-tgma.owl
index 0c71d3626d..9d60121bec 100644
--- a/src/ontology/bridge/uberon-bridge-to-tgma.owl
+++ b/src/ontology/bridge/uberon-bridge-to-tgma.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-wbbt.owl b/src/ontology/bridge/uberon-bridge-to-wbbt.owl
index 33b3ddf7b2..207e035f8b 100644
--- a/src/ontology/bridge/uberon-bridge-to-wbbt.owl
+++ b/src/ontology/bridge/uberon-bridge-to-wbbt.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-wbls.owl b/src/ontology/bridge/uberon-bridge-to-wbls.owl
index aa3558bc60..9688dd3a55 100644
--- a/src/ontology/bridge/uberon-bridge-to-wbls.owl
+++ b/src/ontology/bridge/uberon-bridge-to-wbls.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/bridge/uberon-bridge-to-xao.owl b/src/ontology/bridge/uberon-bridge-to-xao.owl
index 2bfbf181ff..39c9cd0d50 100644
--- a/src/ontology/bridge/uberon-bridge-to-xao.owl
+++ b/src/ontology/bridge/uberon-bridge-to-xao.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Erik Segerdell
VG Ponferrada
Uberon editors
diff --git a/src/ontology/bridge/uberon-bridge-to-zfa.owl b/src/ontology/bridge/uberon-bridge-to-zfa.owl
index 4ebf0618bf..83c2c5048a 100644
--- a/src/ontology/bridge/uberon-bridge-to-zfa.owl
+++ b/src/ontology/bridge/uberon-bridge-to-zfa.owl
@@ -9,7 +9,7 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
-
+
Melissa Haendel
Veri Van Slyke
Yvonne Bradford
diff --git a/src/ontology/bridge/uberon-bridge-to-zfs.owl b/src/ontology/bridge/uberon-bridge-to-zfs.owl
index 50cf15b1bc..fd4a4f76be 100644
--- a/src/ontology/bridge/uberon-bridge-to-zfs.owl
+++ b/src/ontology/bridge/uberon-bridge-to-zfs.owl
@@ -8,7 +8,7 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
-
+
diff --git a/src/ontology/components/hra_subset.owl b/src/ontology/components/hra_subset.owl
index 45ca962e60..448c96240d 100644
--- a/src/ontology/components/hra_subset.owl
+++ b/src/ontology/components/hra_subset.owl
@@ -163,15 +163,6 @@
-
-
-
-
-
-
-
-
-
@@ -217,6 +208,15 @@
+
+
+
+
+
+
+
+
+
@@ -280,6 +280,15 @@
+
+
+
+
+
+
+
+
+
@@ -559,6 +568,15 @@
+
+
+
+
+
+
+
+
+
@@ -748,6 +766,15 @@
+
+
+
+
+
+
+
+
+
@@ -820,6 +847,24 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
@@ -892,15 +937,6 @@
-
-
-
-
-
-
-
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diff --git a/src/ontology/components/vasculature_class.owl b/src/ontology/components/vasculature_class.owl
index 791a4edae8..416eb2e5b4 100644
--- a/src/ontology/components/vasculature_class.owl
+++ b/src/ontology/components/vasculature_class.owl
@@ -2321,5 +2321,5 @@
-
+
diff --git a/src/ontology/imports/local-cl.owl b/src/ontology/imports/local-cl.owl
index 91ab86b460..51d87a8947 100644
--- a/src/ontology/imports/local-cl.owl
+++ b/src/ontology/imports/local-cl.owl
@@ -17,7 +17,7 @@ Prefix(oboInOwl:=)
Ontology(
-
+
Annotation(obo:IAO_0000700 obo:CL_0000000)
Annotation(dc:description "An ontology of cell types.")
Annotation(dc:title "Cell Ontology")
@@ -33,7 +33,7 @@ Annotation(terms:contributor )
Annotation(terms:contributor )
Annotation(terms:license )
Annotation(rdfs:comment "See PMID:15693950, PMID:12799354, PMID:20123131, PMID:21208450; Contact Alexander Diehl, addiehl@buffalo.edu, University at Buffalo.")
-Annotation(owl:versionInfo "2023-12-05")
+Annotation(owl:versionInfo "2024-01-04")
Declaration(Class(obo:CL_0000000))
Declaration(Class(obo:CL_0000001))
@@ -3015,6 +3015,7 @@ Declaration(Class(obo:CL_4033057))
Declaration(Class(obo:CL_4033058))
Declaration(Class(obo:CL_4033059))
Declaration(Class(obo:CL_4033060))
+Declaration(Class(obo:CL_4033061))
Declaration(Class(obo:CL_4040000))
Declaration(Class(obo:CL_4040001))
Declaration(Class(obo:CL_4040002))
@@ -5717,7 +5718,6 @@ AnnotationAssertion(owl:deprecated obo:CL_0000124 "true"^^xsd:boolean)
# Class: obo:CL_0000125 (glial cell)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D009457") obo:IAO_0000115 obo:CL_0000125 "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.")
-AnnotationAssertion(obo:RO_0002175 obo:CL_0000125 obo:NCBITaxon_9606)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "BTO:0002606")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "CALOHA:TS-0415")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "FBbt:00005144")
@@ -5725,7 +5725,6 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000125 "FMA:54536")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000125 "neuroglial cell")
AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000125 "neuroglia")
AnnotationAssertion(oboInOwl:inSubset obo:CL_0000125 cl:general_cell_types_upper_slim)
-AnnotationAssertion(oboInOwl:inSubset obo:CL_0000125 core:human_reference_atlas)
AnnotationAssertion(rdfs:comment obo:CL_0000125 "Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571")
AnnotationAssertion(rdfs:label obo:CL_0000125 "glial cell")
SubClassOf(obo:CL_0000125 obo:CL_0000095)
@@ -8132,8 +8131,6 @@ EquivalentClasses(obo:CL_0000412 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeV
# Class: obo:CL_0000413 (haploid cell)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FB:ma") Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_0000413 "A cell whose nucleus contains a single haploid genome.")
-AnnotationAssertion(obo:RO_0002175 obo:CL_0000413 obo:NCBITaxon_9606)
-AnnotationAssertion(oboInOwl:inSubset obo:CL_0000413 core:human_reference_atlas)
AnnotationAssertion(rdfs:label obo:CL_0000413 "haploid cell")
EquivalentClasses(obo:CL_0000413 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0001375)))
@@ -12303,10 +12300,12 @@ DisjointClasses(obo:CL_0000838 obo:CL_0000839)
# Class: obo:CL_0000839 (myeloid lineage restricted progenitor cell)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:add") Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:19022770") obo:IAO_0000115 obo:CL_0000839 "A progenitor cell restricted to the myeloid lineage.")
+AnnotationAssertion(obo:RO_0002175 obo:CL_0000839 obo:NCBITaxon_9606)
AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000839 "myeloid progenitor cell")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000839 "BTO:0004730")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000839 "CALOHA:TS-2099")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000839 "FMA:70339")
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0000839 core:human_reference_atlas)
AnnotationAssertion(rdfs:comment obo:CL_0000839 "Note that this is a class of cell types, not an identified single cell type.")
AnnotationAssertion(rdfs:label obo:CL_0000839 "myeloid lineage restricted progenitor cell")
EquivalentClasses(obo:CL_0000839 ObjectIntersectionOf(obo:CL_0002031 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030099)))
@@ -19041,7 +19040,7 @@ SubClassOf(obo:CL_0002362 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000984
# Class: obo:CL_0002363 (keratocyte)
-AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:978-0-7020-2958-5") obo:IAO_0000115 obo:CL_0002363 "A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate.")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ISBN:9780702029585") obo:IAO_0000115 obo:CL_0002363 "A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic morphology; located between the lamellae with a large flattened nucleus, and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratan sulfate.")
AnnotationAssertion(obo:RO_0002175 obo:CL_0002363 obo:NCBITaxon_9606)
AnnotationAssertion(terms:contributor obo:CL_0002363 )
AnnotationAssertion(oboInOwl:creation_date obo:CL_0002363 "2010-09-22T01:57:40Z")
@@ -25149,6 +25148,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32304633") obo:IAO_00001
AnnotationAssertion(obo:RO_0002175 obo:CL_0009082 obo:NCBITaxon_9606)
AnnotationAssertion(terms:contributor obo:CL_0009082 )
AnnotationAssertion(terms:date obo:CL_0009082 "2021-11-25T09:30:45Z"^^xsd:dateTime)
+AnnotationAssertion(oboInOwl:inSubset obo:CL_0009082 core:human_reference_atlas)
AnnotationAssertion(rdfs:comment obo:CL_0009082 "There is growing evidence that molecular markers characterizing double negative thymocytes are different across species, especially in human versus mouse thymus. This term is restricted for use with human data.")
AnnotationAssertion(rdfs:label obo:CL_0009082 "committed double negative thymocyte (Homo sapiens)")
SubClassOf(obo:CL_0009082 obo:CL_0002489)
@@ -28963,9 +28963,7 @@ SubClassOf(obo:CL_1000909 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000128
# Class: obo:CL_1000979 (ureter smooth muscle cell)
-AnnotationAssertion(obo:RO_0002175 obo:CL_1000979 obo:NCBITaxon_9606)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000979 "KUPO:0001118")
-AnnotationAssertion(oboInOwl:inSubset obo:CL_1000979 core:human_reference_atlas)
AnnotationAssertion(rdfs:label obo:CL_1000979 "ureter smooth muscle cell")
EquivalentClasses(obo:CL_1000979 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006855)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000979 obo:CL_0000192)
@@ -33058,12 +33056,10 @@ SubClassOf(obo:CL_4030054 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000001666))
# Class: obo:CL_4030055 (intermediate cell of urothelium)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") obo:IAO_0000115 obo:CL_4030055 "A urothelial cell that is part of the regenerative layer(s) of cells directly superficial to basal cells in urothelium. The layer of intermediate cells in the urothelium ranges from one to several layers thick depending on the species with intermediate cells attached to adjacent cell layers and one another via desmosomes.")
-AnnotationAssertion(obo:RO_0002175 obo:CL_4030055 obo:NCBITaxon_9606)
AnnotationAssertion(terms:contributor obo:CL_4030055 "https://orcid.org/0000-0003-3065-9183")
AnnotationAssertion(terms:date obo:CL_4030055 "2023-06-16T07:53:43Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4030055 "FMA:84155")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1007/978-3-030-14366-4_8") oboInOwl:hasExactSynonym obo:CL_4030055 "urothelial intermediate cell")
-AnnotationAssertion(oboInOwl:inSubset obo:CL_4030055 core:human_reference_atlas)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") rdfs:comment obo:CL_4030055 "It has been noted in at least some mammalian species that the urothelial intermediate cell type is similar to basal cells by expressing CK17 and (unlike umbrella cells) p63 but is positive for uroplakins (UPK) and negative for CK5. Urothelial intermediate cells have also been noted to be larger in diameter than urothelial basal cells.")
AnnotationAssertion(rdfs:label obo:CL_4030055 "intermediate cell of urothelium")
SubClassOf(obo:CL_4030055 obo:CL_0000731)
@@ -33071,13 +33067,11 @@ SubClassOf(obo:CL_4030055 obo:CL_0000731)
# Class: obo:CL_4030056 (umbrella cell of urothelium)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") obo:IAO_0000115 obo:CL_4030056 "A urothelial cell that is terminally differentiated and part of the urothelial apical surface that forms the high-resistance barrier of urothelium. Umbrella cells have been described as the largest of urothelial cell types, highly polarized, and, in some species, multinucleated. In the relaxed state, these cells form a dome-shaped structure at the apical pole and can also cover multiple underlying intermediate cells, leading to the name umbrella cells. In contrast, these cells flatten when the bladder is filled.")
-AnnotationAssertion(obo:RO_0002175 obo:CL_4030056 obo:NCBITaxon_9606)
AnnotationAssertion(terms:contributor obo:CL_4030056 "https://orcid.org/0000-0003-3065-9183")
AnnotationAssertion(terms:date obo:CL_4030056 "2023-06-16T07:59:43Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4030056 "FMA:84149")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") oboInOwl:hasExactSynonym obo:CL_4030056 "facet cell of urothelium")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") oboInOwl:hasExactSynonym obo:CL_4030056 "superficial cell of urothelium")
-AnnotationAssertion(oboInOwl:inSubset obo:CL_4030056 core:human_reference_atlas)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41385-022-00565-0") rdfs:comment obo:CL_4030056 "Umbrella cells are attached to sub-superficial cell layers via desmosomes, while tight junctions localized between superficial cells aid in forming a high-resistance barrier function. Another distinguishing feature of an umbrella cell type is the presence of subapical discoidal/fusiform-shaped vesicles contributing to the plasticity in urothelial cell surface area through a regulated process of endocytosis/exocytosis. It has been noted in at least some mammalian species that the urothelial umbrella cell type expresses UPK1A, UPK1B, UPK2 and UPK3A. Unlike intermediate and basal cells of the urothelium, CK17 is reported to be completely absent and p63 not expressed in umbrella cells.")
AnnotationAssertion(rdfs:label obo:CL_4030056 "umbrella cell of urothelium")
SubClassOf(obo:CL_4030056 obo:CL_0000731)
@@ -33922,6 +33916,14 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") oboInOwl:hasR
AnnotationAssertion(rdfs:label obo:CL_4033060 "lactocyte type 2")
SubClassOf(obo:CL_4033060 obo:CL_0002325)
+# Class: obo:CL_4033061 (endothelial cell of central vein of liver)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28287163") obo:IAO_0000115 obo:CL_4033061 "An endothelial cell that is part of a central vein of liver.")
+AnnotationAssertion(terms:contributor obo:CL_4033061 )
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28287163") oboInOwl:hasBroadSynonym obo:CL_4033061 "endothelial cell of central vein")
+AnnotationAssertion(rdfs:label obo:CL_4033061 "endothelial cell of central vein of liver")
+EquivalentClasses(obo:CL_4033061 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006841)))
+
# Class: obo:CL_4040000 (glial restricted tripotential precursor cell)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.")
diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl
index a6f805929b..71d2bbed07 100644
--- a/src/ontology/imports/merged_import.owl
+++ b/src/ontology/imports/merged_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=)
Ontology(
-
-Annotation(owl:versionInfo "2024-01-02")
+
+Annotation(owl:versionInfo "2024-01-18")
Declaration(Class())
Declaration(Class())
@@ -2201,6 +2201,7 @@ Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
+Declaration(Class())
Declaration(Class())
Declaration(Class())
Declaration(Class())
@@ -30463,8 +30464,7 @@ AnnotationAssertion(Annotation( "CHEBI:83813")
AnnotationAssertion( )
AnnotationAssertion(rdfs:label "proteinogenic amino acid")
-SubClassOf( )
-SubClassOf( )
+SubClassOf( )
# Class: (non-proteinogenic amino acid)
@@ -30594,6 +30594,8 @@ SubClassOf( ObjectSomeValuesFrom( (receptor modulator)
AnnotationAssertion( "A drug that acts as an antagonist, agonist, reverse agonist, or in some other fashion when interacting with cellular receptors.")
+AnnotationAssertion( "CHEBI:189678")
+AnnotationAssertion( "Wikipedia:Receptor_modulator")
AnnotationAssertion( "chebi_ontology")
AnnotationAssertion(Annotation( "ChEBI") "receptor modulators")
AnnotationAssertion( "CHEBI:90710")
@@ -31511,7 +31513,6 @@ SubClassOf( ObjectSomeValuesFrom( (glial cell)
AnnotationAssertion(Annotation( "MESH:D009457") "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.")
-AnnotationAssertion( )
AnnotationAssertion( "BTO:0002606")
AnnotationAssertion( "CALOHA:TS-0415")
AnnotationAssertion( "FBbt:00005144")
@@ -31519,7 +31520,6 @@ AnnotationAssertion( "neuroglial cell")
AnnotationAssertion( "neuroglia")
AnnotationAssertion( )
-AnnotationAssertion( )
AnnotationAssertion(rdfs:comment "Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571")
AnnotationAssertion(rdfs:label "glial cell")
SubClassOf( )
@@ -32828,8 +32828,6 @@ EquivalentClasses( ObjectIntersection
# Class: (haploid cell)
AnnotationAssertion(Annotation( "FB:ma") Annotation( "GOC:tfm") "A cell whose nucleus contains a single haploid genome.")
-AnnotationAssertion( )
-AnnotationAssertion( )
AnnotationAssertion(rdfs:label "haploid cell")
EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( )))
@@ -34502,10 +34500,12 @@ DisjointClasses( (myeloid lineage restricted progenitor cell)
AnnotationAssertion(Annotation( "GOC:add") Annotation( "GOC:tfm") Annotation( "PMID:19022770") "A progenitor cell restricted to the myeloid lineage.")
+AnnotationAssertion( )
AnnotationAssertion( "myeloid progenitor cell")
AnnotationAssertion( "BTO:0004730")
AnnotationAssertion( "CALOHA:TS-2099")
AnnotationAssertion( "FMA:70339")
+AnnotationAssertion( )
AnnotationAssertion(rdfs:comment "Note that this is a class of cell types, not an identified single cell type.")
AnnotationAssertion(rdfs:label "myeloid lineage restricted progenitor cell")
EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( )))
@@ -37561,7 +37561,7 @@ SubClassOf( ObjectSomeValuesFrom( (keratocyte)
-AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:978-0-7020-2958-5") "A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate.")
+AnnotationAssertion(Annotation( "GOC:tfm") Annotation( "ISBN:9780702029585") "A keratocyte is a specialized fibroblast residing in the cornea stroma that has a flattened, dendritic morphology; located between the lamellae with a large flattened nucleus, and lengthy processes which communicate with neighboring cells. This corneal layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratan sulfate.")
AnnotationAssertion( )
AnnotationAssertion( )
AnnotationAssertion( "2010-09-22T01:57:40Z")
@@ -42101,9 +42101,7 @@ SubClassOf( ObjectSomeValuesFrom( (ureter smooth muscle cell)
-AnnotationAssertion( )
AnnotationAssertion( "KUPO:0001118")
-AnnotationAssertion( )
AnnotationAssertion(rdfs:label "ureter smooth muscle cell")
EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( )))
SubClassOf(Annotation( "true") )
@@ -44538,6 +44536,14 @@ AnnotationAssertion(rdfs:label "lumi
SubClassOf( )
SubClassOf( )
+# Class: (endothelial cell of central vein of liver)
+
+AnnotationAssertion(Annotation( "PMID:28287163") "An endothelial cell that is part of a central vein of liver.")
+AnnotationAssertion( )
+AnnotationAssertion(Annotation( "PMID:28287163") "endothelial cell of central vein")
+AnnotationAssertion(rdfs:label "endothelial cell of central vein of liver")
+EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( )))
+
# Class: (enteroglial cell)
AnnotationAssertion(Annotation( "PMID:16336493") Annotation( "PMID:17483847") Annotation( "PMID:25975510") "Glial cell that provides support to the enteric nervous system. It is involved in enteric neurotransmission, in maintaining the integrity of the mucosal barrier of the gut and serves as a link between the nervous and immune systems of the gut. In enteric nerve strands, glial processes ensheath multiaxonal bundles which distinguishes enteric glia from all other peripheral glia. Ultrastructurally, the most conspicuous trait of an enteroglial cell is the presence of 10 nm filaments, which criss-cross the cell body, form axial bundles in the processes and appear to firmly anchor the cells to the ganglionic surfaces. Similar to astrocytes, their main constituent is glial fibrillary acidic protein (GFAP).")
@@ -152133,6 +152139,8 @@ AnnotationAssertion(Annotation( ) rdfs:label "Shawn Zheng Kai Tan")
AnnotationAssertion(Annotation( ) "researcher")
AnnotationAssertion(Annotation( ) rdfs:label "David P Hill")
+AnnotationAssertion(Annotation( ) "researcher")
+AnnotationAssertion(Annotation( ) rdfs:label "Ellen Quardokus")
AnnotationAssertion(Annotation( ) "researcher ORCID ID = 0000-0001-7920-5321")
AnnotationAssertion(Annotation( ) rdfs:label "Sarah Whitcher Kansa")
AnnotationAssertion(Annotation( )