diff --git a/src/ontology/diffs/uberon-diff.md b/src/ontology/diffs/uberon-diff.md index 684b7f09e..c98e709d0 100644 --- a/src/ontology/diffs/uberon-diff.md +++ b/src/ontology/diffs/uberon-diff.md @@ -2,1043 +2,9794 @@ ## Left - Ontology IRI: `http://purl.obolibrary.org/obo/uberon/uberon-base.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-03-22/uberon-base.owl` -- Loaded from: `file:/Users/anitac/Documents/GitHub/uberon/src/ontology/diffs/uberon-lastbuild.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/uberon-base.owl` +- Loaded from: `file:/work/src/ontology/diffs/uberon-lastbuild.owl` ## Right - Ontology IRI: `http://purl.obolibrary.org/obo/uberon/uberon-base.owl` -- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-05-13/uberon-base.owl` -- Loaded from: `file:/Users/anitac/Documents/GitHub/uberon/src/ontology/diffs/../../../uberon-base.owl` +- Version IRI: `http://purl.obolibrary.org/obo/uberon/releases/2024-07-02/uberon-base.owl` +- Loaded from: `file:/work/src/ontology/diffs/../../../uberon-base.owl` ### Ontology imports -### Ontology annotations +### Ontology annotations +#### Removed +- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-05-13" + +#### Added +- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-07-02" + + +### A historic synonym, no longer encouraged `http://purl.obolibrary.org/obo/uberon/core#DEPRECATED` + +#### Added +- [A historic synonym, no longer encouraged](http://purl.obolibrary.org/obo/uberon/core#DEPRECATED) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### RO_0020101 `http://purl.obolibrary.org/obo/RO_0020101` + +#### Added +- ObjectProperty: [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) + + +### RO_0020102 `http://purl.obolibrary.org/obo/RO_0020102` + +#### Added +- ObjectProperty: [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) + + +### SubsetProperty `http://www.geneontology.org/formats/oboInOwl#SubsetProperty` + +#### Added +- AnnotationProperty: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### SynonymTypeProperty `http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty` + +#### Added +- AnnotationProperty: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### a mis-spelling that is in common use and thus recorded `http://purl.obolibrary.org/obo/uberon/core#MISSPELLING` + +#### Added +- [a mis-spelling that is in common use and thus recorded](http://purl.obolibrary.org/obo/uberon/core#MISSPELLING) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### a synonym made on the basis of a possibly homologous structure in another species `http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY` + +#### Added +- [a synonym made on the basis of a possibly homologous structure in another species](http://purl.obolibrary.org/obo/uberon/core#HOMOLOGY) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### a systematic synonym used as the base name for design patterns `http://purl.obolibrary.org/obo/uberon/core#SYSTEMATIC` + +#### Added +- [a systematic synonym used as the base name for design patterns](http://purl.obolibrary.org/obo/uberon/core#SYSTEMATIC) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### accessory XI nerve `http://purl.obolibrary.org/obo/UBERON_0002019` +#### Removed +- [accessory XI nerve](http://purl.obolibrary.org/obo/UBERON_0002019) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9340" + + + +### accessory meningeal artery `http://purl.obolibrary.org/obo/UBERON_8600099` + +#### Added +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:79467" + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Accessory_meningeal_artery" + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) [label](http://www.w3.org/2000/01/rdf-schema#label) "accessory meningeal artery" + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- Class: [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [meningeal cluster](http://purl.obolibrary.org/obo/UBERON_0010743) + +- [accessory meningeal artery](http://purl.obolibrary.org/obo/UBERON_8600099) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [maxillary artery](http://purl.obolibrary.org/obo/UBERON_0001616) + + +### accessory nerve root `http://purl.obolibrary.org/obo/UBERON_0014615` + +#### Added +- [accessory nerve root](http://purl.obolibrary.org/obo/UBERON_0014615) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9340" + + +### added_for_HCA `http://purl.obolibrary.org/obo/uberon/core#added_for_HCA` + +#### Added +- [added_for_HCA](http://purl.obolibrary.org/obo/uberon/core#added_for_HCA) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### anterior internal vertebral venous plexus `http://purl.obolibrary.org/obo/UBERON_8600103` + +#### Added +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) [label](http://www.w3.org/2000/01/rdf-schema#label) "anterior internal vertebral venous plexus" + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:4869" + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Internal_vertebral_venous_plexuses" + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- Class: [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) SubClassOf [vasculature of organ](http://purl.obolibrary.org/obo/UBERON_0006876) + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) SubClassOf [vasculature of central nervous system](http://purl.obolibrary.org/obo/UBERON_0036303) + +- [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) SubClassOf [venous plexus](http://purl.obolibrary.org/obo/UBERON_0001593) + + +### aortic plexus `http://purl.obolibrary.org/obo/UBERON_0035772` + +#### Added +- [aortic plexus](http://purl.obolibrary.org/obo/UBERON_0035772) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [aortic plexus](http://purl.obolibrary.org/obo/UBERON_0035772) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### artery of pterygoid canal `http://purl.obolibrary.org/obo/UBERON_8600100` + +#### Added +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) [label](http://www.w3.org/2000/01/rdf-schema#label) "artery of pterygoid canal" + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:85528" + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Artery_of_the_pterygoid_canal" + +- Class: [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [maxillary artery](http://purl.obolibrary.org/obo/UBERON_0001616) + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) SubClassOf ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [middle ear](http://purl.obolibrary.org/obo/UBERON_0001756)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [pharyngotympanic tube](http://purl.obolibrary.org/obo/UBERON_0002393)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [pharynx](http://purl.obolibrary.org/obo/UBERON_0006562)) + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [artery of pterygoid canal](http://purl.obolibrary.org/obo/UBERON_8600100) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + + +### ascending palatine artery `http://purl.obolibrary.org/obo/UBERON_8600095` + +#### Added +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:49555" + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) [label](http://www.w3.org/2000/01/rdf-schema#label) "ascending palatine artery" + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the facial artery, and branches to supply the soft palate and the palatine tonsil." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Ascending_palatine_artery" + +- Class: [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) SubClassOf ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [soft palate](http://purl.obolibrary.org/obo/UBERON_0001733)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [palatine tonsil](http://purl.obolibrary.org/obo/UBERON_0002373)) + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [facial artery](http://purl.obolibrary.org/obo/UBERON_0001612) + +- [ascending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600095) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + + +### ascending pharyngeal artery `http://purl.obolibrary.org/obo/UBERON_8600078` + +#### Added +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery of the neck that branches from the external carotid artery and supplies the pharynx." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Ascending_pharyngeal_artery" + +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:49497" + +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) [label](http://www.w3.org/2000/01/rdf-schema#label) "ascending pharyngeal artery" + +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) + +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [pharynx](http://purl.obolibrary.org/obo/UBERON_0006562) + +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) SubClassOf [branch of external carotid artery](http://purl.obolibrary.org/obo/UBERON_0035398) + +- [ascending pharyngeal artery](http://purl.obolibrary.org/obo/UBERON_8600078) SubClassOf [cervical artery](http://purl.obolibrary.org/obo/UBERON_0012320) + + +### atrioventricular nodal artery `http://purl.obolibrary.org/obo/UBERON_8600055` + +#### Added +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "atrioventricular node branch of right coronary artery" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:3851" + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:3851" + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the right coronary artery and supplies the atrioventricular node." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Atrioventricular_nodal_branch" + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) [label](http://www.w3.org/2000/01/rdf-schema#label) "atrioventricular nodal artery" + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [right coronary artery](http://purl.obolibrary.org/obo/UBERON_0001625) + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) SubClassOf [heart blood vessel](http://purl.obolibrary.org/obo/UBERON_0003498) + +- [atrioventricular nodal artery](http://purl.obolibrary.org/obo/UBERON_8600055) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [atrioventricular node](http://purl.obolibrary.org/obo/UBERON_0002352) + + +### autonomic nerve `http://purl.obolibrary.org/obo/UBERON_0034728` + +#### Added +- [autonomic nerve](http://purl.obolibrary.org/obo/UBERON_0034728) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [autonomic nerve](http://purl.obolibrary.org/obo/UBERON_0034728) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### basivertebral vein `http://purl.obolibrary.org/obo/UBERON_8600066` + +#### Added +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:321542" + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) [label](http://www.w3.org/2000/01/rdf-schema#label) "basivertebral vein" + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the anterior internal vertebral venous plexus and drains blood from the vertebral bodies." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.53347/rID-36991" + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) SubClassOf [back blood vessel](http://purl.obolibrary.org/obo/UBERON_0004258) + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [bony vertebral centrum](http://purl.obolibrary.org/obo/UBERON_0001075) + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [basivertebral vein](http://purl.obolibrary.org/obo/UBERON_8600066) SubClassOf [ectoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004121) + + +### brain name abbreviations (drosophila) `http://purl.obolibrary.org/obo/uberon/core#BRAIN_NAME_ABV` + +#### Added +- [brain name abbreviations (drosophila)](http://purl.obolibrary.org/obo/uberon/core#BRAIN_NAME_ABV) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### bronchial venule `http://purl.obolibrary.org/obo/UBERON_8600067` + +#### Added +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) [label](http://www.w3.org/2000/01/rdf-schema#label) "bronchial venule" + +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A venule that is tributary of the bronchial veins and drains blood from the bronchi and bronchioles of the lungs." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Bronchial_veins" + +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- Class: [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) + +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) SubClassOf [pulmonary venule](http://purl.obolibrary.org/obo/UBERON_8600024) + +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [respiratory tube](http://purl.obolibrary.org/obo/UBERON_0000117) + +- [bronchial venule](http://purl.obolibrary.org/obo/UBERON_8600067) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [bronchial vein](http://purl.obolibrary.org/obo/UBERON_0001592) + + +### carotid sinus nerve `http://purl.obolibrary.org/obo/UBERON_0009009` + +#### Added +- [carotid sinus nerve](http://purl.obolibrary.org/obo/UBERON_0009009) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [carotid sinus nerve](http://purl.obolibrary.org/obo/UBERON_0009009) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### channel for `http://purl.obolibrary.org/obo/uberon/core#channel_for` + +#### Added +- [channel for](http://purl.obolibrary.org/obo/uberon/core#channel_for) Domain [anatomical conduit](http://purl.obolibrary.org/obo/UBERON_0004111) + +- [channel for](http://purl.obolibrary.org/obo/uberon/core#channel_for) Range [organism substance](http://purl.obolibrary.org/obo/UBERON_0000463) + + +### channels_from `http://purl.obolibrary.org/obo/uberon/core#channels_from` + +#### Added +- Transitive: [channels_from](http://purl.obolibrary.org/obo/uberon/core#channels_from) + + +### channels_into `http://purl.obolibrary.org/obo/uberon/core#channels_into` + +#### Added +- Transitive: [channels_into](http://purl.obolibrary.org/obo/uberon/core#channels_into) + + +### chorda tympani branch of facial nerve `http://purl.obolibrary.org/obo/UBERON_0009675` + +#### Added +- [chorda tympani branch of facial nerve](http://purl.obolibrary.org/obo/UBERON_0009675) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorda tympani branch of facial nerve](http://purl.obolibrary.org/obo/UBERON_0009675) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic immature intermediate villus `http://purl.obolibrary.org/obo/UBERON_8600029` + +#### Added +- [chorionic immature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600029) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic immature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600029) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### chorionic mature intermediate villus `http://purl.obolibrary.org/obo/UBERON_8600031` + +#### Added +- [chorionic mature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600031) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic mature intermediate villus](http://purl.obolibrary.org/obo/UBERON_8600031) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic mesenchymal villus `http://purl.obolibrary.org/obo/UBERON_8600028` + +#### Added +- [chorionic mesenchymal villus](http://purl.obolibrary.org/obo/UBERON_8600028) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic mesenchymal villus](http://purl.obolibrary.org/obo/UBERON_8600028) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### chorionic stem villous blood vessel `http://purl.obolibrary.org/obo/UBERON_8600040` + +#### Added +- [chorionic stem villous blood vessel](http://purl.obolibrary.org/obo/UBERON_8600040) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic stem villous blood vessel](http://purl.obolibrary.org/obo/UBERON_8600040) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic stem villus `http://purl.obolibrary.org/obo/UBERON_8600027` + +#### Added +- [chorionic stem villus](http://purl.obolibrary.org/obo/UBERON_8600027) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic stem villus](http://purl.obolibrary.org/obo/UBERON_8600027) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic terminal villous capillary `http://purl.obolibrary.org/obo/UBERON_8600041` + +#### Added +- [chorionic terminal villous capillary](http://purl.obolibrary.org/obo/UBERON_8600041) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic terminal villous capillary](http://purl.obolibrary.org/obo/UBERON_8600041) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic terminal villus `http://purl.obolibrary.org/obo/UBERON_8600030` + +#### Added +- [chorionic terminal villus](http://purl.obolibrary.org/obo/UBERON_8600030) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [chorionic terminal villus](http://purl.obolibrary.org/obo/UBERON_8600030) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### chorionic villous mesenchyme `http://purl.obolibrary.org/obo/UBERON_8600039` + +#### Added +- [chorionic villous mesenchyme](http://purl.obolibrary.org/obo/UBERON_8600039) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic villous mesenchyme](http://purl.obolibrary.org/obo/UBERON_8600039) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### chorionic villous tree `http://purl.obolibrary.org/obo/UBERON_8600026` + +#### Added +- [chorionic villous tree](http://purl.obolibrary.org/obo/UBERON_8600026) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [chorionic villous tree](http://purl.obolibrary.org/obo/UBERON_8600026) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### circumflex humeral vein `http://purl.obolibrary.org/obo/UBERON_8600073` + +#### Added +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the axillary vein and drains blood from the region around the neck of the humerus." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Axillary_vein" + +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) [label](http://www.w3.org/2000/01/rdf-schema#label) "circumflex humeral vein" + +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) + +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [axillary vein](http://purl.obolibrary.org/obo/UBERON_0000985) + +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [humerus](http://purl.obolibrary.org/obo/UBERON_0000976) + +- [circumflex humeral vein](http://purl.obolibrary.org/obo/UBERON_8600073) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [shoulder](http://purl.obolibrary.org/obo/UBERON_0001467) + + +### common_anatomy `http://purl.obolibrary.org/obo/uberon/core#common_anatomy` + +#### Added +- [common_anatomy](http://purl.obolibrary.org/obo/uberon/core#common_anatomy) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### communicating branch of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0017642` + +#### Added +- [communicating branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017642) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [communicating branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017642) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### cranial nerve `http://purl.obolibrary.org/obo/UBERON_0001785` +#### Removed +- [cranial nerve](http://purl.obolibrary.org/obo/UBERON_0001785) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9299" + + + +### cumbo `http://purl.obolibrary.org/obo/uberon/core#cumbo` + +#### Added +- [cumbo](http://purl.obolibrary.org/obo/uberon/core#cumbo) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### cyclostome_subset `http://purl.obolibrary.org/obo/uberon/core#cyclostome_subset` + +#### Added +- [cyclostome_subset](http://purl.obolibrary.org/obo/uberon/core#cyclostome_subset) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### deep cervical vein `http://purl.obolibrary.org/obo/UBERON_8600059` + +#### Added +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:4746" + +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) [label](http://www.w3.org/2000/01/rdf-schema#label) "deep cervical vein" + +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of a vertebral vein and drains the suboccipital region, adjacent vertebral column, and deep muscles of the neck." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Deep_cervical_vein" + +- Class: [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) + +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) SubClassOf [neck blood vessel](http://purl.obolibrary.org/obo/UBERON_0003502) + +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [vertebral vein](http://purl.obolibrary.org/obo/UBERON_0001588) + +- [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + + +### deep lingual artery `http://purl.obolibrary.org/obo/UBERON_8600097` + +#### Added +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:49532" + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the lingual artery and supplies blood to the tongue itself, particularly the body and tip of the tongue. The deep lingual artery travels superiorly in a tortuous course along the under (ventral) surface of the tongue, below the longitudinalis inferior, and above the mucous membrane." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Lingual_artery" + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "third part of lingual artery" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:49532" + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [label](http://www.w3.org/2000/01/rdf-schema#label) "deep lingual artery" + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) SubClassOf [lingual artery](http://purl.obolibrary.org/obo/UBERON_0001610) + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [lingual artery](http://purl.obolibrary.org/obo/UBERON_0001610) + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [deep lingual artery](http://purl.obolibrary.org/obo/UBERON_8600097) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [tongue](http://purl.obolibrary.org/obo/UBERON_0001723) + + +### deep lingual vein `http://purl.obolibrary.org/obo/UBERON_8600069` + +#### Added +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:50830" + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the lingual vein and drains blood from the tongue." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Deep_lingual_vein" + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) [label](http://www.w3.org/2000/01/rdf-schema#label) "deep lingual vein" + +- Class: [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [lingual vein](http://purl.obolibrary.org/obo/UBERON_0006634) + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) + +- [deep lingual vein](http://purl.obolibrary.org/obo/UBERON_8600069) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [tongue](http://purl.obolibrary.org/obo/UBERON_0001723) + + +### defined_by_cytoarchitecture `http://purl.obolibrary.org/obo/uberon/core#defined_by_cytoarchitecture` + +#### Added +- [defined_by_cytoarchitecture](http://purl.obolibrary.org/obo/uberon/core#defined_by_cytoarchitecture) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### defined_by_ordinal_series `http://purl.obolibrary.org/obo/uberon/core#defined_by_ordinal_series` + +#### Added +- [defined_by_ordinal_series](http://purl.obolibrary.org/obo/uberon/core#defined_by_ordinal_series) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### descending palatine artery `http://purl.obolibrary.org/obo/UBERON_8600101` + +#### Added +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the maxillary artery and supplies the hard and soft palate." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Descending_palatine_artery" + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:49791" + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) [label](http://www.w3.org/2000/01/rdf-schema#label) "descending palatine artery" + +- Class: [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) SubClassOf ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [soft palate](http://purl.obolibrary.org/obo/UBERON_0001733)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [hard palate](http://purl.obolibrary.org/obo/UBERON_0003216)) + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [maxillary artery](http://purl.obolibrary.org/obo/UBERON_0001616) + +- [descending palatine artery](http://purl.obolibrary.org/obo/UBERON_8600101) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + + +### developmental term `http://purl.obolibrary.org/obo/uberon/core#DEVELOPMENTAL` + +#### Added +- [developmental term](http://purl.obolibrary.org/obo/uberon/core#DEVELOPMENTAL) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### developmental_classification `http://purl.obolibrary.org/obo/uberon/core#developmental_classification` + +#### Added +- [developmental_classification](http://purl.obolibrary.org/obo/uberon/core#developmental_classification) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### distally connected to `http://purl.obolibrary.org/obo/uberon/core#distally_connected_to` + +#### Added +- [distally connected to](http://purl.obolibrary.org/obo/uberon/core#distally_connected_to) InverseOf [proximally connected to](http://purl.obolibrary.org/obo/uberon/core#proximally_connected_to) + + +### dorsal lingual artery `http://purl.obolibrary.org/obo/UBERON_8600098` + +#### Added +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) [label](http://www.w3.org/2000/01/rdf-schema#label) "dorsal lingual artery" + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the lingual artery and supplies the soft palate, tonsils, epiglottis, palatoglossal arch, and adjacent mucous membrane. The dorsal lingual artery runs along the upper border of the hyoid bone and anastomises with its fellow of the opposite side." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.ncbi.nlm.nih.gov/books/NBK554513/" + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:49546" + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- Class: [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [lingual artery](http://purl.obolibrary.org/obo/UBERON_0001610) + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) SubClassOf ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [epiglottis](http://purl.obolibrary.org/obo/UBERON_0000388)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [soft palate](http://purl.obolibrary.org/obo/UBERON_0001733)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [palatine tonsil](http://purl.obolibrary.org/obo/UBERON_0002373)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [palatoglossal arch](http://purl.obolibrary.org/obo/UBERON_0011640)) + +- [dorsal lingual artery](http://purl.obolibrary.org/obo/UBERON_8600098) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + + +### dorsal lingual vein `http://purl.obolibrary.org/obo/UBERON_8600070` + +#### Added +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:50826" + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) [label](http://www.w3.org/2000/01/rdf-schema#label) "dorsal lingual vein" + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the lingual vein and drains blood from the dorsum of the tongue, and the sides of the tongue." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Dorsal_lingual_veins" + +- Class: [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [tongue](http://purl.obolibrary.org/obo/UBERON_0001723) + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) + +- [dorsal lingual vein](http://purl.obolibrary.org/obo/UBERON_8600070) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [lingual vein](http://purl.obolibrary.org/obo/UBERON_0006634) + + +### dorsal ramus of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0006839` + +#### Added +- [dorsal ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006839) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [dorsal ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006839) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### dubious_grouping `http://purl.obolibrary.org/obo/uberon/core#dubious_grouping` + +#### Added +- [dubious_grouping](http://purl.obolibrary.org/obo/uberon/core#dubious_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### dural artery `http://purl.obolibrary.org/obo/UBERON_8600079` + +#### Added +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) [label](http://www.w3.org/2000/01/rdf-schema#label) "dural artery" + +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the internal carotid artery and supplies the anterior clinoid process of the dura mater." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1016/j.wneu.2018.12.071" + +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) + +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [pericardium](http://purl.obolibrary.org/obo/UBERON_0002407) + +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [internal carotid artery](http://purl.obolibrary.org/obo/UBERON_0001532) + +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [dural artery](http://purl.obolibrary.org/obo/UBERON_8600079) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + + +### early_development `http://purl.obolibrary.org/obo/uberon/core#early_development` + +#### Added +- [early_development](http://purl.obolibrary.org/obo/uberon/core#early_development) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### efo_slim `http://purl.obolibrary.org/obo/uberon/core#efo_slim` + +#### Added +- [efo_slim](http://purl.obolibrary.org/obo/uberon/core#efo_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### emapa_ehdaa2 `http://purl.obolibrary.org/obo/uberon/core#emapa_ehdaa2` + +#### Added +- [emapa_ehdaa2](http://purl.obolibrary.org/obo/uberon/core#emapa_ehdaa2) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### endometrial lymphatic vessel `http://purl.obolibrary.org/obo/UBERON_8600042` + +#### Added +- [endometrial lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_8600042) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [endometrial lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_8600042) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### epibranchial ganglion `http://purl.obolibrary.org/obo/UBERON_0009127` + +#### Added +- [epibranchial ganglion](http://purl.obolibrary.org/obo/UBERON_0009127) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [epibranchial ganglion](http://purl.obolibrary.org/obo/UBERON_0009127) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### esophageal vein `http://purl.obolibrary.org/obo/UBERON_8600053` + +#### Added +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) [label](http://www.w3.org/2000/01/rdf-schema#label) "esophageal vein" + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:4748" + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the azygos vein and drains blood from the esophagus." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Esophageal_veins" + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- Class: [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [esophagus](http://purl.obolibrary.org/obo/UBERON_0001043) + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) SubClassOf [neck blood vessel](http://purl.obolibrary.org/obo/UBERON_0003502) + +- [esophageal vein](http://purl.obolibrary.org/obo/UBERON_8600053) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [azygos vein](http://purl.obolibrary.org/obo/UBERON_0001594) + + +### expert consultation and attribution required `http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW` + +#### Added +- [expert consultation and attribution required](http://purl.obolibrary.org/obo/uberon/core#PENDING_REVIEW) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### extends_fibers_into `http://purl.obolibrary.org/obo/uberon/core#extends_fibers_into` + +#### Added +- Symmetric: [extends_fibers_into](http://purl.obolibrary.org/obo/uberon/core#extends_fibers_into) + + +### external female genitalia `http://purl.obolibrary.org/obo/UBERON_0005056` + +#### Added +- [external female genitalia](http://purl.obolibrary.org/obo/UBERON_0005056) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [external female genitalia](http://purl.obolibrary.org/obo/UBERON_0005056) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) + + +### external male genitalia `http://purl.obolibrary.org/obo/UBERON_0004053` +#### Removed +- [external male genitalia](http://purl.obolibrary.org/obo/UBERON_0004053) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "The external masculine genital organs, including the penis and scrotum." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009199" + +#### Added +- [external male genitalia](http://purl.obolibrary.org/obo/UBERON_0004053) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [external male genitalia](http://purl.obolibrary.org/obo/UBERON_0004053) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "The external masculine genital organs." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "MP:0009199" + +- [external male genitalia](http://purl.obolibrary.org/obo/UBERON_0004053) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_50557](http://purl.obolibrary.org/obo/NCBITaxon_50557) + + +### external nasal vein `http://purl.obolibrary.org/obo/UBERON_8600087` + +#### Added +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) [label](http://www.w3.org/2000/01/rdf-schema#label) "external nasal vein" + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the angular vein and drains blood from the superficial tissues and skin of the dorsum (bridge) and ala (wings) of the nose." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.anatomy.net/angular-vein" + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:50910" + +- Class: [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [nose](http://purl.obolibrary.org/obo/UBERON_0000004) + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [external nasal vein](http://purl.obolibrary.org/obo/UBERON_8600087) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [angular vein](http://purl.obolibrary.org/obo/UBERON_0014686) + + +### feed_aligned `http://purl.obolibrary.org/obo/uberon/core#feed_aligned` + +#### Added +- [feed_aligned](http://purl.obolibrary.org/obo/uberon/core#feed_aligned) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### femoral nerve `http://purl.obolibrary.org/obo/UBERON_0001267` + +#### Added +- [femoral nerve](http://purl.obolibrary.org/obo/UBERON_0001267) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [femoral nerve](http://purl.obolibrary.org/obo/UBERON_0001267) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### fibular vein `http://purl.obolibrary.org/obo/UBERON_8600083` + +#### Added +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:71587" + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) [label](http://www.w3.org/2000/01/rdf-schema#label) "fibular vein" + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the posterior tibial vein and drains blood from the lateral compartment of the leg." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Fibular_veins" + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "set of peroneal veins" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:71587" + +- Class: [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) SubClassOf [hindlimb blood vessel](http://purl.obolibrary.org/obo/UBERON_0003516) + +- [fibular vein](http://purl.obolibrary.org/obo/UBERON_8600083) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [posterior tibial vein](http://purl.obolibrary.org/obo/UBERON_0001546) + + +### frontal nerve (branch of ophthalmic) `http://purl.obolibrary.org/obo/UBERON_0000942` + +#### Added +- [frontal nerve (branch of ophthalmic)](http://purl.obolibrary.org/obo/UBERON_0000942) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [frontal nerve (branch of ophthalmic)](http://purl.obolibrary.org/obo/UBERON_0000942) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### functional_classification `http://purl.obolibrary.org/obo/uberon/core#functional_classification` + +#### Added +- [functional_classification](http://purl.obolibrary.org/obo/uberon/core#functional_classification) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### geniculate ganglion `http://purl.obolibrary.org/obo/UBERON_0001700` + +#### Added +- [geniculate ganglion](http://purl.obolibrary.org/obo/UBERON_0001700) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [geniculate ganglion](http://purl.obolibrary.org/obo/UBERON_0001700) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### glandular venous plexus `http://purl.obolibrary.org/obo/UBERON_8600072` + +#### Added +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "thiroid venous plexus" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.53347/rID-70578" + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A venous plexus tha connects the middle and superior thyroid veins." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.anatomy.net/superior-thyroid-vein" + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) [label](http://www.w3.org/2000/01/rdf-schema#label) "glandular venous plexus" + +- Class: [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) SubClassOf [vasculature of organ](http://purl.obolibrary.org/obo/UBERON_0006876) + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [thyroid gland](http://purl.obolibrary.org/obo/UBERON_0002046) + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) SubClassOf [venous plexus](http://purl.obolibrary.org/obo/UBERON_0001593) + +- [glandular venous plexus](http://purl.obolibrary.org/obo/UBERON_8600072) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [superior thyroid vein](http://purl.obolibrary.org/obo/UBERON_0007157) + + +### glossopharyngeal nerve `http://purl.obolibrary.org/obo/UBERON_0001649` +#### Removed +- [glossopharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0001649) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9334" + + + +### glossopharyngeal nerve root `http://purl.obolibrary.org/obo/UBERON_0019310` + +#### Added +- [glossopharyngeal nerve root](http://purl.obolibrary.org/obo/UBERON_0019310) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9334" + + +### greater splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018680` + +#### Added +- [greater splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018680) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [greater splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018680) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### grouping_class `http://purl.obolibrary.org/obo/uberon/core#grouping_class` + +#### Added +- [grouping_class](http://purl.obolibrary.org/obo/uberon/core#grouping_class) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### hepatic portal venule `http://purl.obolibrary.org/obo/UBERON_8600085` + +#### Added +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) [label](http://www.w3.org/2000/01/rdf-schema#label) "hepatic portal venule" + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A venule that branches from the hepatic portal vein to transport nutrient-rich blood from the gastrointestinal tract and spleen to supply the liver. The hepatic portal venule is tributary of the hepatic sinusoids." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Liver_sinusoid" + +- Class: [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) SubClassOf [venule](http://purl.obolibrary.org/obo/UBERON_0001979) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [liver lobule](http://purl.obolibrary.org/obo/UBERON_0004647) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [hepatic portal vein](http://purl.obolibrary.org/obo/UBERON_0001639) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [hepatic sinusoid](http://purl.obolibrary.org/obo/UBERON_0001281) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) SubClassOf [liver blood vessel](http://purl.obolibrary.org/obo/UBERON_0015796) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + +- [hepatic portal venule](http://purl.obolibrary.org/obo/UBERON_8600085) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [liver lobule](http://purl.obolibrary.org/obo/UBERON_0004647) + + +### homology_grouping `http://purl.obolibrary.org/obo/uberon/core#homology_grouping` + +#### Added +- [homology_grouping](http://purl.obolibrary.org/obo/uberon/core#homology_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### human_reference_atlas `http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas` + +#### Added +- [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### hypogastric nerve `http://purl.obolibrary.org/obo/UBERON_0005303` + +#### Added +- [hypogastric nerve](http://purl.obolibrary.org/obo/UBERON_0005303) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [hypogastric nerve](http://purl.obolibrary.org/obo/UBERON_0005303) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### hypoglossal nerve `http://purl.obolibrary.org/obo/UBERON_0001650` +#### Removed +- [hypoglossal nerve](http://purl.obolibrary.org/obo/UBERON_0001650) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9343" + + + +### hypoglossal nerve root `http://purl.obolibrary.org/obo/UBERON_0004675` + +#### Added +- [hypoglossal nerve root](http://purl.obolibrary.org/obo/UBERON_0004675) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9343" + + +### hypophyseal vein `http://purl.obolibrary.org/obo/UBERON_8600090` + +#### Added +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the cavernous sinus and drains blood from the pituitary gland." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.kenhub.com/en/library/anatomy/the-cavernous-sinus" + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) [label](http://www.w3.org/2000/01/rdf-schema#label) "hypophyseal vein" + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- Class: [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [cavernous sinus](http://purl.obolibrary.org/obo/UBERON_0003712) + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) SubClassOf [brain blood vessel](http://purl.obolibrary.org/obo/UBERON_0003499) + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) + +- [hypophyseal vein](http://purl.obolibrary.org/obo/UBERON_8600090) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) + + +### incisor artery `http://purl.obolibrary.org/obo/UBERON_8600086` + +#### Added +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) [label](http://www.w3.org/2000/01/rdf-schema#label) "incisor artery" + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the inferior alveolar artery and supplies the roots and pulp of the teeth of the lower jaw. It forms anastomoses with its contralateral partner." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Inferior_alveolar_artery" + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [inferior alveolar artery](http://purl.obolibrary.org/obo/UBERON_0014693) + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [incisor artery](http://purl.obolibrary.org/obo/UBERON_8600086) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [set of lower jaw teeth](http://purl.obolibrary.org/obo/UBERON_0009679) + + +### inconsistent_with_fma `http://purl.obolibrary.org/obo/uberon/core#inconsistent_with_fma` + +#### Added +- [inconsistent_with_fma](http://purl.obolibrary.org/obo/uberon/core#inconsistent_with_fma) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### indicates that a synonym is used in an inconsistent or confusing way, typically between species `http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT` + +#### Added +- [indicates that a synonym is used in an inconsistent or confusing way, typically between species](http://purl.obolibrary.org/obo/uberon/core#INCONSISTENT) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) + + +### indirectly_supplies `http://purl.obolibrary.org/obo/uberon/core#indirectly_supplies` + +#### Added +- Transitive: [indirectly_supplies](http://purl.obolibrary.org/obo/uberon/core#indirectly_supplies) + + +### inferior anastomotic vein `http://purl.obolibrary.org/obo/UBERON_8600091` + +#### Added +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) [label](http://www.w3.org/2000/01/rdf-schema#label) "inferior anastomotic vein" + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the transverse sinus and drains blood from the adjacent cortical regions of the temporal lobe. The inferior anastomotic vein forms an anastomosis (connection) between the superficial middle cerebral vein anteriorly and the transverse sinus posteriorly." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Inferior_anastomotic_vein" + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:51239" + +- Class: [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [transverse sinus](http://purl.obolibrary.org/obo/UBERON_0001641) + +- [inferior anastomotic vein](http://purl.obolibrary.org/obo/UBERON_8600091) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [temporal lobe](http://purl.obolibrary.org/obo/UBERON_0001871) + + +### inferior hypogastric nerve plexus `http://purl.obolibrary.org/obo/UBERON_0002014` + +#### Added +- [inferior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002014) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [inferior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002014) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### inferior mesenteric nerve plexus `http://purl.obolibrary.org/obo/UBERON_0035770` + +#### Added +- [inferior mesenteric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0035770) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [inferior mesenteric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0035770) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### inferior vena cava `http://purl.obolibrary.org/obo/UBERON_0001072` +#### Removed +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "inferior vena cava" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Venae_cavae" + +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [label](http://www.w3.org/2000/01/rdf-schema#label) "posterior vena cava" + +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "posterior vena cava" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "Wikipedia:Venae_cavae" + +#### Added +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "posterior vena cava" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:21154280" + +- [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) [label](http://www.w3.org/2000/01/rdf-schema#label) "inferior vena cava" + + +### insect dorsal mesothorax `http://purl.obolibrary.org/obo/UBERON_6004579` +#### Removed +- [insect dorsal mesothorax](http://purl.obolibrary.org/obo/UBERON_6004579) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00004579" + - [mapping_justification](https://w3id.org/sssom/mapping_justification) [ManualMappingCuration](https://w3id.org/semapv/vocab/ManualMappingCuration) + + + +### internal carotid nerve plexus `http://purl.obolibrary.org/obo/UBERON_0002024` + +#### Added +- [internal carotid nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002024) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [internal carotid nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002024) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### intervertebral vein `http://purl.obolibrary.org/obo/UBERON_8600104` + +#### Added +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) [label](http://www.w3.org/2000/01/rdf-schema#label) "intervertebral vein" + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.kenhub.com/en/library/anatomy/veins-of-the-vertebral-column" + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:76736" + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- Class: [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) SubClassOf [back blood vessel](http://purl.obolibrary.org/obo/UBERON_0004258) + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) SubClassOf ([RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [posterior intercostal vein](http://purl.obolibrary.org/obo/UBERON_0012199)) and ([RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056)) and ([RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105)) + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) + +- [intervertebral vein](http://purl.obolibrary.org/obo/UBERON_8600104) SubClassOf [ectoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004121) + + +### intra-acinar arteriole `http://purl.obolibrary.org/obo/UBERON_8600094` + +#### Added +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An arteriole that branches from the pulmonary arteriole and supplies deoxygenated blood to the pulmonary capillaries in the alveoli of the lungs." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20110543" + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) [label](http://www.w3.org/2000/01/rdf-schema#label) "intra-acinar arteriole" + +- Class: [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [alveolus of lung](http://purl.obolibrary.org/obo/UBERON_0002299) + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) SubClassOf [respiratory system artery](http://purl.obolibrary.org/obo/UBERON_0003469) + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) SubClassOf [respiratory system arteriole](http://purl.obolibrary.org/obo/UBERON_0003495) + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [pulmonary acinus](http://purl.obolibrary.org/obo/UBERON_0008874) + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) SubClassOf [lung blood vessel](http://purl.obolibrary.org/obo/UBERON_0003512) + +- [intra-acinar arteriole](http://purl.obolibrary.org/obo/UBERON_8600094) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) + + +### intra-acinar venule `http://purl.obolibrary.org/obo/UBERON_8600061` + +#### Added +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A venule that receives drainage from the capillary beds after blood has perfused the pulmonary alveoli, and is tributary of the pulmonary venules." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:20110543" + +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) [label](http://www.w3.org/2000/01/rdf-schema#label) "intra-acinar venule" + +- Class: [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) + +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [pulmonary venule](http://purl.obolibrary.org/obo/UBERON_8600024) + +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [alveolus of lung](http://purl.obolibrary.org/obo/UBERON_0002299) + +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) SubClassOf [pulmonary venule](http://purl.obolibrary.org/obo/UBERON_8600024) + +- [intra-acinar venule](http://purl.obolibrary.org/obo/UBERON_8600061) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [pulmonary acinus](http://purl.obolibrary.org/obo/UBERON_0008874) + + +### kidney loop of Henle long descending thin limb inner medulla `http://purl.obolibrary.org/obo/UBERON_8600037` + +#### Added +- [kidney loop of Henle long descending thin limb inner medulla](http://purl.obolibrary.org/obo/UBERON_8600037) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [kidney loop of Henle long descending thin limb inner medulla](http://purl.obolibrary.org/obo/UBERON_8600037) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### kidney loop of Henle long descending thin limb outer medulla `http://purl.obolibrary.org/obo/UBERON_8600036` + +#### Added +- [kidney loop of Henle long descending thin limb outer medulla](http://purl.obolibrary.org/obo/UBERON_8600036) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [kidney loop of Henle long descending thin limb outer medulla](http://purl.obolibrary.org/obo/UBERON_8600036) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### lacrimal bone `http://purl.obolibrary.org/obo/UBERON_0001680` + +#### Added +- [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "ectethmoid" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "UBERON:3010146" + + +### lacrimal nerve `http://purl.obolibrary.org/obo/UBERON_0011096` + +#### Added +- [lacrimal nerve](http://purl.obolibrary.org/obo/UBERON_0011096) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lacrimal nerve](http://purl.obolibrary.org/obo/UBERON_0011096) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### lateral femoral circumflex vein `http://purl.obolibrary.org/obo/UBERON_8600065` + +#### Added +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "set of lateral circumflex femoral veins" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:70921" + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:70921" + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the femoral vein and drains blood from the front and middle areas of the thigh." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.kenhub.com/en/library/anatomy/femoral-vein" + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) [label](http://www.w3.org/2000/01/rdf-schema#label) "lateral femoral circumflex vein" + +- Class: [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) SubClassOf [hindlimb blood vessel](http://purl.obolibrary.org/obo/UBERON_0003516) + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [lateral femoral circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600065) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [femoral vein](http://purl.obolibrary.org/obo/UBERON_0001361) + + +### lateral sacral vein `http://purl.obolibrary.org/obo/UBERON_8600056` + +#### Added +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:18905" + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) [label](http://www.w3.org/2000/01/rdf-schema#label) "lateral sacral vein" + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the internal iliac vein and drains the anterior surface of the sacrum." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Lateral_sacral_veins" + +- Class: [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [fused sacrum](http://purl.obolibrary.org/obo/UBERON_0003690) + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [lateral sacral vein](http://purl.obolibrary.org/obo/UBERON_8600056) SubClassOf [pelvis blood vessel](http://purl.obolibrary.org/obo/UBERON_0003520) + + +### lateral tuberal nucleus `http://purl.obolibrary.org/obo/UBERON_0000435` + +#### Added +- [lateral tuberal nucleus](http://purl.obolibrary.org/obo/UBERON_0000435) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lateral tuberal nucleus](http://purl.obolibrary.org/obo/UBERON_0000435) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### least splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0001964` + +#### Added +- [least splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0001964) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [least splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0001964) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### left anterior descending artery `http://purl.obolibrary.org/obo/UBERON_8600102` + +#### Added +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "anterior interventricular branch of left coronary artery" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:3862" + +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:3862" + +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Left_anterior_descending_artery" + +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [label](http://www.w3.org/2000/01/rdf-schema#label) "left anterior descending artery" + +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- Class: [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) + +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) SubClassOf [thoracic segment blood vessel](http://purl.obolibrary.org/obo/UBERON_0003834) + +- [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) SubClassOf [branch of left coronary artery](http://purl.obolibrary.org/obo/UBERON_0035395) + + +### lesser splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018681` + +#### Added +- [lesser splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018681) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [lesser splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018681) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### lingual nerve `http://purl.obolibrary.org/obo/UBERON_0003721` + +#### Added +- [lingual nerve](http://purl.obolibrary.org/obo/UBERON_0003721) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lingual nerve](http://purl.obolibrary.org/obo/UBERON_0003721) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### location_grouping `http://purl.obolibrary.org/obo/uberon/core#location_grouping` + +#### Added +- [location_grouping](http://purl.obolibrary.org/obo/uberon/core#location_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### long ciliary nerve `http://purl.obolibrary.org/obo/UBERON_0022301` + +#### Added +- [long ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022301) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [long ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022301) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### lumbar nerve `http://purl.obolibrary.org/obo/UBERON_0009624` + +#### Added +- [lumbar nerve](http://purl.obolibrary.org/obo/UBERON_0009624) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [lumbar nerve](http://purl.obolibrary.org/obo/UBERON_0009624) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### lumbar splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018683` + +#### Added +- [lumbar splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018683) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [lumbar splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018683) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### lumbar vein `http://purl.obolibrary.org/obo/UBERON_8600105` + +#### Added +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "set of lumbar veins" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:70889" + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [label](http://www.w3.org/2000/01/rdf-schema#label) "lumbar vein" + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.kenhub.com/en/library/anatomy/lumbar-veins" + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:70889" + +- Class: [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) SubClassOf ([RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [abdominal wall](http://purl.obolibrary.org/obo/UBERON_0003697)) and ([RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [lower back](http://purl.obolibrary.org/obo/UBERON_0005462)) + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [inferior vena cava](http://purl.obolibrary.org/obo/UBERON_0001072) + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) SubClassOf [pelvis blood vessel](http://purl.obolibrary.org/obo/UBERON_0003520) + +- [lumbar vein](http://purl.obolibrary.org/obo/UBERON_8600105) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + + +### major_organ `http://purl.obolibrary.org/obo/uberon/core#major_organ` + +#### Added +- [major_organ](http://purl.obolibrary.org/obo/uberon/core#major_organ) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### meningeal branch of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0017641` + +#### Added +- [meningeal branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017641) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [meningeal branch of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0017641) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### mental vein `http://purl.obolibrary.org/obo/UBERON_8600068` + +#### Added +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) [label](http://www.w3.org/2000/01/rdf-schema#label) "mental vein" + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the facial vein and drains blood from the chin and lower lip." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.17354/ijss/2016/337" + +- Class: [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [lower jaw region](http://purl.obolibrary.org/obo/UBERON_0001710) + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) + +- [mental vein](http://purl.obolibrary.org/obo/UBERON_8600068) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [facial vein](http://purl.obolibrary.org/obo/UBERON_0001653) + + +### mesenteric plexus `http://purl.obolibrary.org/obo/UBERON_0035771` + +#### Added +- [mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0035771) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0035771) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### metazoa_core `http://purl.obolibrary.org/obo/uberon/core#metazoa_core` + +#### Added +- [metazoa_core](http://purl.obolibrary.org/obo/uberon/core#metazoa_core) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### middle hemorrhoidal vein `http://purl.obolibrary.org/obo/UBERON_8600057` + +#### Added +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [label](http://www.w3.org/2000/01/rdf-schema#label) "middle hemorrhoidal vein" + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "middle rectal vein" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:18893" + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the internal iliac vein." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Middle_rectal_veins" + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:18893" + +- Class: [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [rectum](http://purl.obolibrary.org/obo/UBERON_0001052) + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) + +- [middle hemorrhoidal vein](http://purl.obolibrary.org/obo/UBERON_8600057) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) + + +### myenteric nerve plexus of small intestine `http://purl.obolibrary.org/obo/UBERON_8410063` + +#### Added +- [myenteric nerve plexus of small intestine](http://purl.obolibrary.org/obo/UBERON_8410063) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + +- [myenteric nerve plexus of small intestine](http://purl.obolibrary.org/obo/UBERON_8410063) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + + +### nasociliary nerve `http://purl.obolibrary.org/obo/UBERON_0022300` + +#### Added +- [nasociliary nerve](http://purl.obolibrary.org/obo/UBERON_0022300) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nasociliary nerve](http://purl.obolibrary.org/obo/UBERON_0022300) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### nasopalatine nerve `http://purl.obolibrary.org/obo/UBERON_0008810` + +#### Added +- [nasopalatine nerve](http://purl.obolibrary.org/obo/UBERON_0008810) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nasopalatine nerve](http://purl.obolibrary.org/obo/UBERON_0008810) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### nerve of cervical vertebra `http://purl.obolibrary.org/obo/UBERON_0000962` + +#### Added +- [nerve of cervical vertebra](http://purl.obolibrary.org/obo/UBERON_0000962) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nerve of cervical vertebra](http://purl.obolibrary.org/obo/UBERON_0000962) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### nerve root `http://purl.obolibrary.org/obo/UBERON_0002211` + +#### Added +- [nerve root](http://purl.obolibrary.org/obo/UBERON_0002211) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [nerve root](http://purl.obolibrary.org/obo/UBERON_0002211) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### non_informative `http://purl.obolibrary.org/obo/uberon/core#non_informative` + +#### Added +- [non_informative](http://purl.obolibrary.org/obo/uberon/core#non_informative) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### obsolete 4-8 cell stage `http://purl.obolibrary.org/obo/UBERON_0007234` +#### Removed +- [obsolete 4-8 cell stage](http://purl.obolibrary.org/obo/UBERON_0007234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0019250" + +#### Added +- [obsolete 4-8 cell stage](http://purl.obolibrary.org/obo/UBERON_0007234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [4-8 cell stage embryo](http://purl.obolibrary.org/obo/UBERON_0019250) + + +### obsolete B cell `http://purl.obolibrary.org/obo/UBERON_3010309` +#### Removed +- [obsolete B cell](http://purl.obolibrary.org/obo/UBERON_3010309) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000236" + +#### Added +- [obsolete B cell](http://purl.obolibrary.org/obo/UBERON_3010309) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000236](http://purl.obolibrary.org/obo/CL_0000236) + + +### obsolete Dorsal tail tubercle `http://purl.obolibrary.org/obo/UBERON_3010812` +#### Removed +- [obsolete Dorsal tail tubercle](http://purl.obolibrary.org/obo/UBERON_3010812) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3010201" + +#### Added +- [obsolete Dorsal tail tubercle](http://purl.obolibrary.org/obo/UBERON_3010812) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dorsal tail tubercle](http://purl.obolibrary.org/obo/UBERON_3010201) + + +### obsolete Drosophila lymph gland `http://purl.obolibrary.org/obo/UBERON_0005059` +#### Removed +- [obsolete Drosophila lymph gland](http://purl.obolibrary.org/obo/UBERON_0005059) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001668" + +#### Added +- [obsolete Drosophila lymph gland](http://purl.obolibrary.org/obo/UBERON_0005059) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001668](http://purl.obolibrary.org/obo/FBbt_00001668) + + +### obsolete Kolmer-Agduhr neuron `http://purl.obolibrary.org/obo/UBERON_2005240` +#### Removed +- [obsolete Kolmer-Agduhr neuron](http://purl.obolibrary.org/obo/UBERON_2005240) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0005007" + +#### Added +- [obsolete Kolmer-Agduhr neuron](http://purl.obolibrary.org/obo/UBERON_2005240) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0005007](http://purl.obolibrary.org/obo/CL_0005007) + + +### obsolete Merkel cell `http://purl.obolibrary.org/obo/UBERON_3010626` +#### Removed +- [obsolete Merkel cell](http://purl.obolibrary.org/obo/UBERON_3010626) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000242" + +#### Added +- [obsolete Merkel cell](http://purl.obolibrary.org/obo/UBERON_3010626) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000242](http://purl.obolibrary.org/obo/CL_0000242) + + +### obsolete Nobelian bone `http://purl.obolibrary.org/obo/UBERON_3000885` +#### Removed +- [obsolete Nobelian bone](http://purl.obolibrary.org/obo/UBERON_3000885) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3010240" + +#### Added +- [obsolete Nobelian bone](http://purl.obolibrary.org/obo/UBERON_3000885) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [Nobelian rod](http://purl.obolibrary.org/obo/UBERON_3010240) + + +### obsolete Schreckstoff `http://purl.obolibrary.org/obo/UBERON_2002050` +#### Removed +- [obsolete Schreckstoff](http://purl.obolibrary.org/obo/UBERON_2002050) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CHEBI:133299" + +#### Added +- [obsolete Schreckstoff](http://purl.obolibrary.org/obo/UBERON_2002050) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CHEBI_133299](http://purl.obolibrary.org/obo/CHEBI_133299) + + +### obsolete T cell `http://purl.obolibrary.org/obo/UBERON_3010311` +#### Removed +- [obsolete T cell](http://purl.obolibrary.org/obo/UBERON_3010311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000084" + +#### Added +- [obsolete T cell](http://purl.obolibrary.org/obo/UBERON_3010311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000084](http://purl.obolibrary.org/obo/CL_0000084) + + +### obsolete abdominal segment `http://purl.obolibrary.org/obo/UBERON_0000917` +#### Removed +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002417" + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000021" + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000016" + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SPD:0000055" + +#### Added +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000016](http://purl.obolibrary.org/obo/HAO_0000016) + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SPD_0000055](http://purl.obolibrary.org/obo/SPD_0000055) + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [abdominal segment of trunk](http://purl.obolibrary.org/obo/UBERON_0002417) + +- [obsolete abdominal segment](http://purl.obolibrary.org/obo/UBERON_0000917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000021](http://purl.obolibrary.org/obo/FBbt_00000021) + + +### obsolete accessory nasal sac `http://purl.obolibrary.org/obo/UBERON_4300204` +#### Removed +- [obsolete accessory nasal sac](http://purl.obolibrary.org/obo/UBERON_4300204) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4300152" + +#### Added +- [obsolete accessory nasal sac](http://purl.obolibrary.org/obo/UBERON_4300204) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [accessory nasal sac](http://purl.obolibrary.org/obo/UBERON_4300152) + + +### obsolete adductor `http://purl.obolibrary.org/obo/UBERON_2000463` +#### Removed +- [obsolete adductor](http://purl.obolibrary.org/obo/UBERON_2000463) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011145" + +#### Added +- [obsolete adductor](http://purl.obolibrary.org/obo/UBERON_2000463) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [adductor muscle](http://purl.obolibrary.org/obo/UBERON_0011145) + + +### obsolete adductor muscle `http://purl.obolibrary.org/obo/UBERON_0000952` +#### Removed +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011145" + +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011144" + +#### Added +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [adductor muscle of hip](http://purl.obolibrary.org/obo/UBERON_0011144) + +- [obsolete adductor muscle](http://purl.obolibrary.org/obo/UBERON_0000952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [adductor muscle](http://purl.obolibrary.org/obo/UBERON_0011145) + + +### obsolete adrenal vein `http://purl.obolibrary.org/obo/UBERON_0009660` +#### Removed +- [obsolete adrenal vein](http://purl.obolibrary.org/obo/UBERON_0009660) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001146" + +#### Added +- [obsolete adrenal vein](http://purl.obolibrary.org/obo/UBERON_0009660) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [suprarenal vein](http://purl.obolibrary.org/obo/UBERON_0001146) + + +### obsolete adult abdominal sensillum `http://purl.obolibrary.org/obo/UBERON_0000968` +#### Removed +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000206" + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004461" + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000206" + +#### Added +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000206](http://purl.obolibrary.org/obo/MIAA_0000206) + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000206](http://purl.obolibrary.org/obo/MAT_0000206) + +- [obsolete adult abdominal sensillum](http://purl.obolibrary.org/obo/UBERON_0000968) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004461](http://purl.obolibrary.org/obo/FBbt_00004461) + + +### obsolete adult arthropod abdomen `http://purl.obolibrary.org/obo/UBERON_0003146` +#### Removed +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000088" + +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003023" + +#### Added +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003023](http://purl.obolibrary.org/obo/FBbt_00003023) + +- [obsolete adult arthropod abdomen](http://purl.obolibrary.org/obo/UBERON_0003146) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000088](http://purl.obolibrary.org/obo/HAO_0000088) + + +### obsolete adult arthropod thorax `http://purl.obolibrary.org/obo/UBERON_0003145` +#### Removed +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000090" + +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003018" + +#### Added +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000090](http://purl.obolibrary.org/obo/HAO_0000090) + +- [obsolete adult arthropod thorax](http://purl.obolibrary.org/obo/UBERON_0003145) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003018](http://purl.obolibrary.org/obo/FBbt_00003018) + + +### obsolete adult eye primordium `http://purl.obolibrary.org/obo/UBERON_0014457` +#### Removed +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0000227" + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003071" + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:10005249" + +#### Added +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0000227](http://purl.obolibrary.org/obo/XAO_0000227) + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_10005249](http://purl.obolibrary.org/obo/FBbt_10005249) + +- [obsolete adult eye primordium](http://purl.obolibrary.org/obo/UBERON_0014457) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [eye primordium](http://purl.obolibrary.org/obo/UBERON_0003071) + + +### obsolete adult tagma `http://purl.obolibrary.org/obo/UBERON_0003144` +#### Removed +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000089" + +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003005" + +#### Added +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003005](http://purl.obolibrary.org/obo/FBbt_00003005) + +- [obsolete adult tagma](http://purl.obolibrary.org/obo/UBERON_0003144) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000089](http://purl.obolibrary.org/obo/HAO_0000089) + + +### obsolete adult thoracic sensillum `http://purl.obolibrary.org/obo/UBERON_0000967` +#### Removed +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000205" + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000205" + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004245" + +#### Added +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000205](http://purl.obolibrary.org/obo/MAT_0000205) + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000205](http://purl.obolibrary.org/obo/MIAA_0000205) + +- [obsolete adult thoracic sensillum](http://purl.obolibrary.org/obo/UBERON_0000967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004245](http://purl.obolibrary.org/obo/FBbt_00004245) + + +### obsolete adventitia of uterus `http://purl.obolibrary.org/obo/UBERON_0005741` +#### Removed +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001297" + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:29925" + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:29933" + +#### Added +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_29933](http://purl.obolibrary.org/obo/EMAPA_29933) + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [serosa of uterus](http://purl.obolibrary.org/obo/UBERON_0001297) + +- [obsolete adventitia of uterus](http://purl.obolibrary.org/obo/UBERON_0005741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_29925](http://purl.obolibrary.org/obo/EMAPA_29925) + + +### obsolete aedeagus `http://purl.obolibrary.org/obo/UBERON_0003198` +#### Removed +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004850" + +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000091" + +#### Added +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000091](http://purl.obolibrary.org/obo/HAO_0000091) + +- [obsolete aedeagus](http://purl.obolibrary.org/obo/UBERON_0003198) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004850](http://purl.obolibrary.org/obo/FBbt_00004850) + + +### obsolete anal fin `http://purl.obolibrary.org/obo/UBERON_2001162` +#### Removed +- [obsolete anal fin](http://purl.obolibrary.org/obo/UBERON_2001162) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000163" + +#### Added +- [obsolete anal fin](http://purl.obolibrary.org/obo/UBERON_2001162) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [anal fin](http://purl.obolibrary.org/obo/UBERON_4000163) + + +### obsolete anal fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001421` +#### Removed +- [obsolete anal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001421) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000176" + +#### Added +- [obsolete anal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001421) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [anal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000176) + + +### obsolete anal fin skeleton `http://purl.obolibrary.org/obo/UBERON_2000167` +#### Removed +- [obsolete anal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000167) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000166" + +#### Added +- [obsolete anal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000167) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [anal fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000166) + + +### obsolete anepisternum `http://purl.obolibrary.org/obo/UBERON_0003180` +#### Removed +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004597" + +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000094" + +#### Added +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000094](http://purl.obolibrary.org/obo/HAO_0000094) + +- [obsolete anepisternum](http://purl.obolibrary.org/obo/UBERON_0003180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004597](http://purl.obolibrary.org/obo/FBbt_00004597) + + +### obsolete animal hemisphere `http://purl.obolibrary.org/obo/UBERON_3010325` +#### Removed +- [obsolete animal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010325) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012284" + +#### Added +- [obsolete animal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010325) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [animal hemisphere](http://purl.obolibrary.org/obo/UBERON_0012284) + + +### obsolete antennal segment `http://purl.obolibrary.org/obo/UBERON_0003137` +#### Removed +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000009" + +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000104" + +#### Added +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000104](http://purl.obolibrary.org/obo/HAO_0000104) + +- [obsolete antennal segment](http://purl.obolibrary.org/obo/UBERON_0003137) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000009](http://purl.obolibrary.org/obo/FBbt_00000009) + + +### obsolete anterior notal wing process `http://purl.obolibrary.org/obo/UBERON_0003176` +#### Removed +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004585" + +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000120" + +#### Added +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000120](http://purl.obolibrary.org/obo/HAO_0000120) + +- [obsolete anterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003176) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004585](http://purl.obolibrary.org/obo/FBbt_00004585) + + +### obsolete anterior tentorial pit `http://purl.obolibrary.org/obo/UBERON_0003159` +#### Removed +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000126" + +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004502" + +#### Added +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000126](http://purl.obolibrary.org/obo/HAO_0000126) + +- [obsolete anterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003159) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004502](http://purl.obolibrary.org/obo/FBbt_00004502) + + +### obsolete apical ectodermal ridge forelimb `http://purl.obolibrary.org/obo/UBERON_0005241` +#### Removed +- [obsolete apical ectodermal ridge forelimb](http://purl.obolibrary.org/obo/UBERON_0005241) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001064" + +#### Added +- [obsolete apical ectodermal ridge forelimb](http://purl.obolibrary.org/obo/UBERON_0005241) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001064](http://purl.obolibrary.org/obo/VHOG_0001064) + + +### obsolete apical ectodermal ridge hindlimb `http://purl.obolibrary.org/obo/UBERON_0005242` +#### Removed +- [obsolete apical ectodermal ridge hindlimb](http://purl.obolibrary.org/obo/UBERON_0005242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001066" + +#### Added +- [obsolete apical ectodermal ridge hindlimb](http://purl.obolibrary.org/obo/UBERON_0005242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001066](http://purl.obolibrary.org/obo/VHOG_0001066) + + +### obsolete apodeme `http://purl.obolibrary.org/obo/UBERON_0003203` +#### Removed +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005091" + +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000142" + +#### Added +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000142](http://purl.obolibrary.org/obo/HAO_0000142) + +- [obsolete apodeme](http://purl.obolibrary.org/obo/UBERON_0003203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005091](http://purl.obolibrary.org/obo/FBbt_00005091) + + +### obsolete apophysis `http://purl.obolibrary.org/obo/UBERON_0003206` +#### Removed +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000143" + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005813" + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:75428" + +#### Added +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_75428](http://purl.obolibrary.org/obo/FMA_75428) + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000143](http://purl.obolibrary.org/obo/HAO_0000143) + +- [obsolete apophysis](http://purl.obolibrary.org/obo/UBERON_0003206) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005813](http://purl.obolibrary.org/obo/FBbt_00005813) + + +### obsolete aqueous humor `http://purl.obolibrary.org/obo/UBERON_2002288` +#### Removed +- [obsolete aqueous humor](http://purl.obolibrary.org/obo/UBERON_2002288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001796" + +#### Added +- [obsolete aqueous humor](http://purl.obolibrary.org/obo/UBERON_2002288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [aqueous humor of eyeball](http://purl.obolibrary.org/obo/UBERON_0001796) + + +### obsolete arthropod appendage segment `http://purl.obolibrary.org/obo/UBERON_0003207` +#### Removed +- [obsolete arthropod appendage segment](http://purl.obolibrary.org/obo/UBERON_0003207) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010758" + +#### Added +- [obsolete arthropod appendage segment](http://purl.obolibrary.org/obo/UBERON_0003207) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [subdivision of organism along appendicular axis](http://purl.obolibrary.org/obo/UBERON_0010758) + + +### obsolete arthropod hypopharynx `http://purl.obolibrary.org/obo/UBERON_0003132` +#### Removed +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005751" + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0000090" + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000409" + +#### Added +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0000090](http://purl.obolibrary.org/obo/TGMA_0000090) + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005751](http://purl.obolibrary.org/obo/FBbt_00005751) + +- [obsolete arthropod hypopharynx](http://purl.obolibrary.org/obo/UBERON_0003132) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000409](http://purl.obolibrary.org/obo/HAO_0000409) + + +### obsolete arthropod oviduct `http://purl.obolibrary.org/obo/UBERON_0006835` +#### Removed +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TADS:0000415" + +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004911" + +#### Added +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TADS_0000415](http://purl.obolibrary.org/obo/TADS_0000415) + +- [obsolete arthropod oviduct](http://purl.obolibrary.org/obo/UBERON_0006835) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004911](http://purl.obolibrary.org/obo/FBbt_00004911) + + +### obsolete articular cartilage `http://purl.obolibrary.org/obo/UBERON_0001086` +#### Removed +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011002" + +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010996" + +#### Added +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [articular cartilage element](http://purl.obolibrary.org/obo/UBERON_0011002) + +- [obsolete articular cartilage](http://purl.obolibrary.org/obo/UBERON_0001086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [articular cartilage of joint](http://purl.obolibrary.org/obo/UBERON_0010996) + + +### obsolete articulation `http://purl.obolibrary.org/obo/UBERON_0003205` +#### Removed +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ncithesaurus:Articulation" + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005811" + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000151" + +#### Added +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ncithesaurus_Articulation](http://purl.obolibrary.org/obo/ncithesaurus_Articulation) + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005811](http://purl.obolibrary.org/obo/FBbt_00005811) + +- [obsolete articulation](http://purl.obolibrary.org/obo/UBERON_0003205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000151](http://purl.obolibrary.org/obo/HAO_0000151) + + +### obsolete atrium `http://purl.obolibrary.org/obo/UBERON_0001050` +#### Removed +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002081" + +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:85574" + +#### Added +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cardiac atrium](http://purl.obolibrary.org/obo/UBERON_0002081) + +- [obsolete atrium](http://purl.obolibrary.org/obo/UBERON_0001050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_85574](http://purl.obolibrary.org/obo/FMA_85574) + + +### obsolete auditory epithelial support cell `http://purl.obolibrary.org/obo/UBERON_2005244` +#### Removed +- [obsolete auditory epithelial support cell](http://purl.obolibrary.org/obo/UBERON_2005244) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0005014" + +#### Added +- [obsolete auditory epithelial support cell](http://purl.obolibrary.org/obo/UBERON_2005244) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0005014](http://purl.obolibrary.org/obo/CL_0005014) + + +### obsolete autopalatine `http://purl.obolibrary.org/obo/UBERON_0004748` +#### Removed +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0000372" + +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000620" + +#### Added +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000620](http://purl.obolibrary.org/obo/ZFA_0000620) + +- [obsolete autopalatine](http://purl.obolibrary.org/obo/UBERON_0004748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0000372](http://purl.obolibrary.org/obo/AAO_0000372) + + +### obsolete auxilia `http://purl.obolibrary.org/obo/UBERON_0003188` +#### Removed +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004654" + +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000153" + +#### Added +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004654](http://purl.obolibrary.org/obo/FBbt_00004654) + +- [obsolete auxilia](http://purl.obolibrary.org/obo/UBERON_0003188) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000153](http://purl.obolibrary.org/obo/HAO_0000153) + + +### obsolete axillary cord `http://purl.obolibrary.org/obo/UBERON_0003193` +#### Removed +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000157" + +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004744" + +#### Added +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000157](http://purl.obolibrary.org/obo/HAO_0000157) + +- [obsolete axillary cord](http://purl.obolibrary.org/obo/UBERON_0003193) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004744](http://purl.obolibrary.org/obo/FBbt_00004744) + + +### obsolete axillary sclerite `http://purl.obolibrary.org/obo/UBERON_0003192` +#### Removed +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000159" + +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004737" + +#### Added +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004737](http://purl.obolibrary.org/obo/FBbt_00004737) + +- [obsolete axillary sclerite](http://purl.obolibrary.org/obo/UBERON_0003192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000159](http://purl.obolibrary.org/obo/HAO_0000159) + + +### obsolete basibranchial element `http://purl.obolibrary.org/obo/UBERON_2001914` +#### Removed +- [obsolete basibranchial element](http://purl.obolibrary.org/obo/UBERON_2001914) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004740" + +#### Added +- [obsolete basibranchial element](http://purl.obolibrary.org/obo/UBERON_2001914) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basibranchial bone](http://purl.obolibrary.org/obo/UBERON_0004740) + + +### obsolete basihyal `http://purl.obolibrary.org/obo/UBERON_3000957` +#### Removed +- [obsolete basihyal](http://purl.obolibrary.org/obo/UBERON_3000957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011614" + +#### Added +- [obsolete basihyal](http://purl.obolibrary.org/obo/UBERON_3000957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [basihyal element](http://purl.obolibrary.org/obo/UBERON_0011614) + + +### obsolete basihyal bone `http://purl.obolibrary.org/obo/UBERON_4000007` +#### Removed +- [obsolete basihyal bone](http://purl.obolibrary.org/obo/UBERON_4000007) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011618" + +#### Added +- [obsolete basihyal bone](http://purl.obolibrary.org/obo/UBERON_4000007) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basihyal bone](http://purl.obolibrary.org/obo/UBERON_0011618) + + +### obsolete basihyal cartilage `http://purl.obolibrary.org/obo/UBERON_4000014` +#### Removed +- [obsolete basihyal cartilage](http://purl.obolibrary.org/obo/UBERON_4000014) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011615" + +#### Added +- [obsolete basihyal cartilage](http://purl.obolibrary.org/obo/UBERON_4000014) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basihyal cartilage](http://purl.obolibrary.org/obo/UBERON_0011615) + + +### obsolete basihyal element `http://purl.obolibrary.org/obo/UBERON_4000005` +#### Removed +- [obsolete basihyal element](http://purl.obolibrary.org/obo/UBERON_4000005) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011614" + +#### Added +- [obsolete basihyal element](http://purl.obolibrary.org/obo/UBERON_4000005) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [basihyal element](http://purl.obolibrary.org/obo/UBERON_0011614) + + +### obsolete basis modioli `http://purl.obolibrary.org/obo/UBERON_0006105` +#### Removed +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2522" + +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:75640" + +#### Added +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2522](http://purl.obolibrary.org/obo/BIRNLEX_2522) + +- [obsolete basis modioli](http://purl.obolibrary.org/obo/UBERON_0006105) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_75640](http://purl.obolibrary.org/obo/FMA_75640) + + +### obsolete bilateral pars tuberalis `http://purl.obolibrary.org/obo/UBERON_3010543` +#### Removed +- [obsolete bilateral pars tuberalis](http://purl.obolibrary.org/obo/UBERON_3010543) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002433" + +#### Added +- [obsolete bilateral pars tuberalis](http://purl.obolibrary.org/obo/UBERON_3010543) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pars tuberalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002433) + + +### obsolete bladder fundus `http://purl.obolibrary.org/obo/UBERON_0005447` +#### Removed +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006081" + +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006082" + +#### Added +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fundus of urinary bladder](http://purl.obolibrary.org/obo/UBERON_0006082) + +- [obsolete bladder fundus](http://purl.obolibrary.org/obo/UBERON_0005447) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fundus of gallbladder](http://purl.obolibrary.org/obo/UBERON_0006081) + + +### obsolete blastoderm cell `http://purl.obolibrary.org/obo/UBERON_3010553` +#### Removed +- [obsolete blastoderm cell](http://purl.obolibrary.org/obo/UBERON_3010553) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000353" + +#### Added +- [obsolete blastoderm cell](http://purl.obolibrary.org/obo/UBERON_3010553) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000353](http://purl.obolibrary.org/obo/CL_0000353) + + +### obsolete blastomere `http://purl.obolibrary.org/obo/UBERON_2000093` +#### Removed +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_2000093) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000353" + +#### Added +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_2000093) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000353](http://purl.obolibrary.org/obo/CL_0000353) + + +### obsolete blastomere `http://purl.obolibrary.org/obo/UBERON_3000044` +#### Removed +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_3000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2000093" + +#### Added +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_3000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_2000093) + + +### obsolete blastomere `http://purl.obolibrary.org/obo/UBERON_0007006` +#### Removed +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:72551" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000093" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0003016" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001221" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BILA:0000052" + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000353" + +#### Added +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000353](http://purl.obolibrary.org/obo/CL_0000353) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000093](http://purl.obolibrary.org/obo/ZFA_0000093) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BILA_0000052](http://purl.obolibrary.org/obo/BILA_0000052) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001221](http://purl.obolibrary.org/obo/VHOG_0001221) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_72551](http://purl.obolibrary.org/obo/FMA_72551) + +- [obsolete blastomere](http://purl.obolibrary.org/obo/UBERON_0007006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0003016](http://purl.obolibrary.org/obo/XAO_0003016) + + +### obsolete body cavity or lining `http://purl.obolibrary.org/obo/UBERON_0004458` +#### Removed +- [obsolete body cavity or lining](http://purl.obolibrary.org/obo/UBERON_0004458) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005906" + +#### Added +- [obsolete body cavity or lining](http://purl.obolibrary.org/obo/UBERON_0004458) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [serous sac](http://purl.obolibrary.org/obo/UBERON_0005906) + + +### obsolete body ganglion `http://purl.obolibrary.org/obo/UBERON_0002545` +#### Removed +- [obsolete body ganglion](http://purl.obolibrary.org/obo/UBERON_0002545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005332" + +#### Added +- [obsolete body ganglion](http://purl.obolibrary.org/obo/UBERON_0002545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005332](http://purl.obolibrary.org/obo/WBbt_0005332) + + +### obsolete body membrane `http://purl.obolibrary.org/obo/UBERON_0023869` +#### Removed +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:090201" + +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000158" + +#### Added +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_090201](http://purl.obolibrary.org/obo/NLXANAT_090201) + +- [obsolete body membrane](http://purl.obolibrary.org/obo/UBERON_0023869) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [membranous layer](http://purl.obolibrary.org/obo/UBERON_0000158) + + +### obsolete brachium conjunctivum `http://purl.obolibrary.org/obo/UBERON_2000624` +#### Removed +- [obsolete brachium conjunctivum](http://purl.obolibrary.org/obo/UBERON_2000624) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002150" + +#### Added +- [obsolete brachium conjunctivum](http://purl.obolibrary.org/obo/UBERON_2000624) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [superior cerebellar peduncle](http://purl.obolibrary.org/obo/UBERON_0002150) + + +### obsolete brain of rodent `http://purl.obolibrary.org/obo/UBERON_0023939` +#### Removed +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000955" + +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005016" + +#### Added +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005016](http://purl.obolibrary.org/obo/NLXANAT_1005016) + +- [obsolete brain of rodent](http://purl.obolibrary.org/obo/UBERON_0023939) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [brain](http://purl.obolibrary.org/obo/UBERON_0000955) + + +### obsolete brain ventricular zone `http://purl.obolibrary.org/obo/UBERON_0004860` +#### Removed +- [obsolete brain ventricular zone](http://purl.obolibrary.org/obo/UBERON_0004860) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003053" + +#### Added +- [obsolete brain ventricular zone](http://purl.obolibrary.org/obo/UBERON_0004860) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ventricular zone](http://purl.obolibrary.org/obo/UBERON_0003053) + + +### obsolete brainstem reticular formation `http://purl.obolibrary.org/obo/UBERON_0015827` +#### Removed +- [obsolete brainstem reticular formation](http://purl.obolibrary.org/obo/UBERON_0015827) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002275" + +#### Added +- [obsolete brainstem reticular formation](http://purl.obolibrary.org/obo/UBERON_0015827) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [reticular formation](http://purl.obolibrary.org/obo/UBERON_0002275) + + +### obsolete brainstem white matter `http://purl.obolibrary.org/obo/UBERON_0003545` +#### Removed +- [obsolete brainstem white matter](http://purl.obolibrary.org/obo/UBERON_0003545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0002741" + +#### Added +- [obsolete brainstem white matter](http://purl.obolibrary.org/obo/UBERON_0003545) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0002741](http://purl.obolibrary.org/obo/MA_0002741) + + +### obsolete buccopharyngeal complex `http://purl.obolibrary.org/obo/UBERON_4300187` +#### Removed +- [obsolete buccopharyngeal complex](http://purl.obolibrary.org/obo/UBERON_4300187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000167" + +#### Added +- [obsolete buccopharyngeal complex](http://purl.obolibrary.org/obo/UBERON_4300187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [oral cavity](http://purl.obolibrary.org/obo/UBERON_0000167) + + +### obsolete bulge `http://purl.obolibrary.org/obo/UBERON_0018306` +#### Removed +- [obsolete bulge](http://purl.obolibrary.org/obo/UBERON_0018306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010188" + +#### Added +- [obsolete bulge](http://purl.obolibrary.org/obo/UBERON_0018306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [protuberance](http://purl.obolibrary.org/obo/UBERON_0010188) + + +### obsolete capitulum radii `http://purl.obolibrary.org/obo/UBERON_3000841` +#### Removed +- [obsolete capitulum radii](http://purl.obolibrary.org/obo/UBERON_3000841) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000840" + +#### Added +- [obsolete capitulum radii](http://purl.obolibrary.org/obo/UBERON_3000841) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [capitulum of radius](http://purl.obolibrary.org/obo/UBERON_3000840) + + +### obsolete caput epididymis `http://purl.obolibrary.org/obo/UBERON_0005188` +#### Removed +- [obsolete caput epididymis](http://purl.obolibrary.org/obo/UBERON_0005188) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004358" + +#### Added +- [obsolete caput epididymis](http://purl.obolibrary.org/obo/UBERON_0005188) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caput epididymis](http://purl.obolibrary.org/obo/UBERON_0004358) + + +### obsolete cartilage bridge of nasal skeleton `http://purl.obolibrary.org/obo/UBERON_3000061` +#### Removed +- [obsolete cartilage bridge of nasal skeleton](http://purl.obolibrary.org/obo/UBERON_3000061) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000381" + +#### Added +- [obsolete cartilage bridge of nasal skeleton](http://purl.obolibrary.org/obo/UBERON_3000061) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [paranasal commissure](http://purl.obolibrary.org/obo/UBERON_3000381) + + +### obsolete cauda epididymis `http://purl.obolibrary.org/obo/UBERON_0005190` +#### Removed +- [obsolete cauda epididymis](http://purl.obolibrary.org/obo/UBERON_0005190) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004360" + +#### Added +- [obsolete cauda epididymis](http://purl.obolibrary.org/obo/UBERON_0005190) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cauda epididymis](http://purl.obolibrary.org/obo/UBERON_0004360) + + +### obsolete caudal fin `http://purl.obolibrary.org/obo/UBERON_2001058` +#### Removed +- [obsolete caudal fin](http://purl.obolibrary.org/obo/UBERON_2001058) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000164" + +#### Added +- [obsolete caudal fin](http://purl.obolibrary.org/obo/UBERON_2001058) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caudal fin](http://purl.obolibrary.org/obo/UBERON_4000164) + + +### obsolete caudal fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001550` +#### Removed +- [obsolete caudal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001550) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000174" + +#### Added +- [obsolete caudal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001550) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caudal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000174) + + +### obsolete caudal fin skeleton `http://purl.obolibrary.org/obo/UBERON_2000862` +#### Removed +- [obsolete caudal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000862) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000167" + +#### Added +- [obsolete caudal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2000862) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [caudal fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000167) + + +### obsolete cavity lining `http://purl.obolibrary.org/obo/UBERON_0004457` +#### Removed +- [obsolete cavity lining](http://purl.obolibrary.org/obo/UBERON_0004457) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000042" + +#### Added +- [obsolete cavity lining](http://purl.obolibrary.org/obo/UBERON_0004457) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [serous membrane](http://purl.obolibrary.org/obo/UBERON_0000042) + + +### obsolete cell body `http://purl.obolibrary.org/obo/UBERON_0001022` +#### Removed +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1044911821" + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005107" + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0043025" + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67301" + +#### Added +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1044911821](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1044911821) + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005107](http://purl.obolibrary.org/obo/FBbt_00005107) + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0043025](http://purl.obolibrary.org/obo/GO_0043025) + +- [obsolete cell body](http://purl.obolibrary.org/obo/UBERON_0001022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67301](http://purl.obolibrary.org/obo/FMA_67301) + + +### obsolete cell part `http://purl.obolibrary.org/obo/UBERON_0000470` +#### Removed +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000014" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0010271" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao-1337158144" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0044464" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C34070" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00007012" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:86454" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CARO:0000014" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BILA:0000014" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C1178969" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Cell_Part" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0001834" + +#### Added +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CARO_0000014](http://purl.obolibrary.org/obo/CARO_0000014) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_86454](http://purl.obolibrary.org/obo/FMA_86454) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [OpenCyc_Mx4rwQwkcZwpEbGdrcN5Y29ycA](http://purl.obolibrary.org/obo/OpenCyc_Mx4rwQwkcZwpEbGdrcN5Y29ycA) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00007012](http://purl.obolibrary.org/obo/FBbt_00007012) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0044464](http://purl.obolibrary.org/obo/GO_0044464) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C1178969](http://purl.obolibrary.org/obo/UMLS_C1178969) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Cell_Part" + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0010271](http://purl.obolibrary.org/obo/AAO_0010271) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000014](http://purl.obolibrary.org/obo/HAO_0000014) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao-1337158144](http://purl.obolibrary.org/obo/NIF_Subcellular_sao-1337158144) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C34070](http://purl.obolibrary.org/obo/NCIT_C34070) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0001834](http://purl.obolibrary.org/obo/TGMA_0001834) + +- [obsolete cell part](http://purl.obolibrary.org/obo/UBERON_0000470) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BILA_0000014](http://purl.obolibrary.org/obo/BILA_0000014) + + +### obsolete cellular lens `http://purl.obolibrary.org/obo/UBERON_0000208` +#### Removed +- [obsolete cellular lens](http://purl.obolibrary.org/obo/UBERON_0000208) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000965" + +#### Added +- [obsolete cellular lens](http://purl.obolibrary.org/obo/UBERON_0000208) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lens of camera-type eye](http://purl.obolibrary.org/obo/UBERON_0000965) + + +### obsolete central nervous system cranial ganglion `http://purl.obolibrary.org/obo/UBERON_0005706` +#### Removed +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:920" + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001714" + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0000226" + +#### Added +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_920](http://purl.obolibrary.org/obo/EHDAA_920) + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0000226](http://purl.obolibrary.org/obo/EHDAA2_0000226) + +- [obsolete central nervous system cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0005706) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cranial ganglion](http://purl.obolibrary.org/obo/UBERON_0001714) + + +### obsolete cerebral cortex mantle layer `http://purl.obolibrary.org/obo/UBERON_0014934` +#### Removed +- [obsolete cerebral cortex mantle layer](http://purl.obolibrary.org/obo/UBERON_0014934) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004040" + +#### Added +- [obsolete cerebral cortex mantle layer](http://purl.obolibrary.org/obo/UBERON_0014934) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cortical intermediate zone](http://purl.obolibrary.org/obo/UBERON_0004040) + + +### obsolete cerebrum `http://purl.obolibrary.org/obo/UBERON_0035955` +#### Removed +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "neuronames:2068" + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001869" + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001893" + +#### Added +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neuronames_2068](http://purl.obolibrary.org/obo/neuronames_2068) + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [telencephalon](http://purl.obolibrary.org/obo/UBERON_0001893) + +- [obsolete cerebrum](http://purl.obolibrary.org/obo/UBERON_0035955) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0001869) + + +### obsolete cervical rib `http://purl.obolibrary.org/obo/UBERON_0018311` +#### Removed +- [obsolete cervical rib](http://purl.obolibrary.org/obo/UBERON_0018311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0018144" + +#### Added +- [obsolete cervical rib](http://purl.obolibrary.org/obo/UBERON_0018311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cervical rib](http://purl.obolibrary.org/obo/UBERON_0018144) + + +### obsolete cervical sclerite `http://purl.obolibrary.org/obo/UBERON_0003169` +#### Removed +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000195" + +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004548" + +#### Added +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000195](http://purl.obolibrary.org/obo/HAO_0000195) + +- [obsolete cervical sclerite](http://purl.obolibrary.org/obo/UBERON_0003169) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004548](http://purl.obolibrary.org/obo/FBbt_00004548) + + +### obsolete cervical trunk `http://purl.obolibrary.org/obo/UBERON_0005201` +#### Removed +- [obsolete cervical trunk](http://purl.obolibrary.org/obo/UBERON_0005201) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0001937" + +#### Added +- [obsolete cervical trunk](http://purl.obolibrary.org/obo/UBERON_0005201) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0001937](http://purl.obolibrary.org/obo/MA_0001937) + + +### obsolete cestode `http://purl.obolibrary.org/obo/UBERON_0018387` +#### Removed +- [obsolete cestode](http://purl.obolibrary.org/obo/UBERON_0018387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "NCBITaxon:6199" + +#### Added +- [obsolete cestode](http://purl.obolibrary.org/obo/UBERON_0018387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [NCBITaxon_6199](http://purl.obolibrary.org/obo/NCBITaxon_6199) + + +### obsolete chondrocranium bone `http://purl.obolibrary.org/obo/UBERON_0003465` +#### Removed +- [obsolete chondrocranium bone](http://purl.obolibrary.org/obo/UBERON_0003465) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011164" + +#### Added +- [obsolete chondrocranium bone](http://purl.obolibrary.org/obo/UBERON_0003465) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neurocranium bone](http://purl.obolibrary.org/obo/UBERON_0011164) + + +### obsolete chondrocyte `http://purl.obolibrary.org/obo/UBERON_3010286` +#### Removed +- [obsolete chondrocyte](http://purl.obolibrary.org/obo/UBERON_3010286) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000138" + +#### Added +- [obsolete chondrocyte](http://purl.obolibrary.org/obo/UBERON_3010286) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000138](http://purl.obolibrary.org/obo/CL_0000138) + + +### obsolete chordablast `http://purl.obolibrary.org/obo/UBERON_4000019` +#### Removed +- [obsolete chordablast](http://purl.obolibrary.org/obo/UBERON_4000019) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007008" + +#### Added +- [obsolete chordablast](http://purl.obolibrary.org/obo/UBERON_4000019) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007008](http://purl.obolibrary.org/obo/CL_0007008) + + +### obsolete chordoblast `http://purl.obolibrary.org/obo/UBERON_4000039` +#### Removed +- [obsolete chordoblast](http://purl.obolibrary.org/obo/UBERON_4000039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007008" + +#### Added +- [obsolete chordoblast](http://purl.obolibrary.org/obo/UBERON_4000039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007008](http://purl.obolibrary.org/obo/CL_0007008) + + +### obsolete cibarium `http://purl.obolibrary.org/obo/UBERON_0003165` +#### Removed +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004526" + +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000201" + +#### Added +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004526](http://purl.obolibrary.org/obo/FBbt_00004526) + +- [obsolete cibarium](http://purl.obolibrary.org/obo/UBERON_0003165) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000201](http://purl.obolibrary.org/obo/HAO_0000201) + + +### obsolete ciliary body `http://purl.obolibrary.org/obo/UBERON_2001203` +#### Removed +- [obsolete ciliary body](http://purl.obolibrary.org/obo/UBERON_2001203) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001775" + +#### Added +- [obsolete ciliary body](http://purl.obolibrary.org/obo/UBERON_2001203) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ciliary body](http://purl.obolibrary.org/obo/UBERON_0001775) + + +### obsolete ciliated cell `http://purl.obolibrary.org/obo/UBERON_3010287` +#### Removed +- [obsolete ciliated cell](http://purl.obolibrary.org/obo/UBERON_3010287) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000064" + +#### Added +- [obsolete ciliated cell](http://purl.obolibrary.org/obo/UBERON_3010287) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000064](http://purl.obolibrary.org/obo/CL_0000064) + + +### obsolete circumpennate `http://purl.obolibrary.org/obo/UBERON_0001364` +#### Removed +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:21431" + +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000271" + +#### Added +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_21431](http://purl.obolibrary.org/obo/FMA_21431) + +- [obsolete circumpennate](http://purl.obolibrary.org/obo/UBERON_0001364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000271](http://purl.obolibrary.org/obo/ZFA_0000271) + + +### obsolete clypeus `http://purl.obolibrary.org/obo/UBERON_0003164` +#### Removed +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004521" + +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000212" + +#### Added +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004521](http://purl.obolibrary.org/obo/FBbt_00004521) + +- [obsolete clypeus](http://purl.obolibrary.org/obo/UBERON_0003164) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000212](http://purl.obolibrary.org/obo/HAO_0000212) + + +### obsolete coffin bone `http://purl.obolibrary.org/obo/UBERON_0009554` +#### Removed +- [obsolete coffin bone](http://purl.obolibrary.org/obo/UBERON_0009554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0014485" + +#### Added +- [obsolete coffin bone](http://purl.obolibrary.org/obo/UBERON_0009554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [distal phalanx of digit 3](http://purl.obolibrary.org/obo/UBERON_0014485) + + +### obsolete coffin joint `http://purl.obolibrary.org/obo/UBERON_0009557` +#### Removed +- [obsolete coffin joint](http://purl.obolibrary.org/obo/UBERON_0009557) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009768" + +#### Added +- [obsolete coffin joint](http://purl.obolibrary.org/obo/UBERON_0009557) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [distal interphalangeal joint](http://purl.obolibrary.org/obo/UBERON_0009768) + + +### obsolete common crus `http://purl.obolibrary.org/obo/UBERON_2005411` +#### Removed +- [obsolete common crus](http://purl.obolibrary.org/obo/UBERON_2005411) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0013764" + +#### Added +- [obsolete common crus](http://purl.obolibrary.org/obo/UBERON_2005411) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [common crus of semicircular duct](http://purl.obolibrary.org/obo/UBERON_0013764) + + +### obsolete connective tissue proper `http://purl.obolibrary.org/obo/UBERON_3000099` +#### Removed +- [obsolete connective tissue proper](http://purl.obolibrary.org/obo/UBERON_3000099) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002384" + +#### Added +- [obsolete connective tissue proper](http://purl.obolibrary.org/obo/UBERON_3000099) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [connective tissue](http://purl.obolibrary.org/obo/UBERON_0002384) + + +### obsolete corpus epididymis `http://purl.obolibrary.org/obo/UBERON_0005189` +#### Removed +- [obsolete corpus epididymis](http://purl.obolibrary.org/obo/UBERON_0005189) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004359" + +#### Added +- [obsolete corpus epididymis](http://purl.obolibrary.org/obo/UBERON_0005189) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [corpus epididymis](http://purl.obolibrary.org/obo/UBERON_0004359) + + +### obsolete costal cell `http://purl.obolibrary.org/obo/UBERON_0003197` +#### Removed +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004770" + +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000226" + +#### Added +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004770](http://purl.obolibrary.org/obo/FBbt_00004770) + +- [obsolete costal cell](http://purl.obolibrary.org/obo/UBERON_0003197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000226](http://purl.obolibrary.org/obo/HAO_0000226) + + +### obsolete coxa `http://purl.obolibrary.org/obo/UBERON_0003186` +#### Removed +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004641" + +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000228" + +#### Added +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004641](http://purl.obolibrary.org/obo/FBbt_00004641) + +- [obsolete coxa](http://purl.obolibrary.org/obo/UBERON_0003186) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000228](http://purl.obolibrary.org/obo/HAO_0000228) + + +### obsolete cranial muscle `http://purl.obolibrary.org/obo/UBERON_2001953` +#### Removed +- [obsolete cranial muscle](http://purl.obolibrary.org/obo/UBERON_2001953) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002376" + +#### Added +- [obsolete cranial muscle](http://purl.obolibrary.org/obo/UBERON_2001953) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cranial muscle](http://purl.obolibrary.org/obo/UBERON_0002376) + + +### obsolete craniofacial region `http://purl.obolibrary.org/obo/UBERON_0010324` +#### Removed +- [obsolete craniofacial region](http://purl.obolibrary.org/obo/UBERON_0010324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001456" + +#### Added +- [obsolete craniofacial region](http://purl.obolibrary.org/obo/UBERON_0010324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [face](http://purl.obolibrary.org/obo/UBERON_0001456) + + +### obsolete craniofacial skeleton `http://purl.obolibrary.org/obo/UBERON_0010325` +#### Removed +- [obsolete craniofacial skeleton](http://purl.obolibrary.org/obo/UBERON_0010325) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011156" + +#### Added +- [obsolete craniofacial skeleton](http://purl.obolibrary.org/obo/UBERON_0010325) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [facial skeleton](http://purl.obolibrary.org/obo/UBERON_0011156) + + +### obsolete crossvein `http://purl.obolibrary.org/obo/UBERON_0003195` +#### Removed +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004765" + +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000236" + +#### Added +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000236](http://purl.obolibrary.org/obo/HAO_0000236) + +- [obsolete crossvein](http://purl.obolibrary.org/obo/UBERON_0003195) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004765](http://purl.obolibrary.org/obo/FBbt_00004765) + + +### obsolete cytoarchitectural part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0023294` +#### Removed +- [obsolete cytoarchitectural part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023294) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2546" + +#### Added +- [obsolete cytoarchitectural part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023294) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2546](http://purl.obolibrary.org/obo/BIRNLEX_2546) + + +### obsolete cytoarchitectural part of dorsal cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0027376` +#### Removed +- [obsolete cytoarchitectural part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0027376) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090511" + +#### Added +- [obsolete cytoarchitectural part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0027376) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090511](http://purl.obolibrary.org/obo/NLXANAT_20090511) + + +### obsolete cytoarchitectural part of dorsal tegmental nucleus `http://purl.obolibrary.org/obo/UBERON_0024086` +#### Removed +- [obsolete cytoarchitectural part of dorsal tegmental nucleus](http://purl.obolibrary.org/obo/UBERON_0024086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090406" + +#### Added +- [obsolete cytoarchitectural part of dorsal tegmental nucleus](http://purl.obolibrary.org/obo/UBERON_0024086) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090406](http://purl.obolibrary.org/obo/NLXANAT_20090406) + + +### obsolete cytoarchitectural part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0025148` +#### Removed +- [obsolete cytoarchitectural part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0025148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4066" + +#### Added +- [obsolete cytoarchitectural part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0025148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4066](http://purl.obolibrary.org/obo/BIRNLEX_4066) + + +### obsolete cytoarchitectural part of occipital lobe `http://purl.obolibrary.org/obo/UBERON_0025147` +#### Removed +- [obsolete cytoarchitectural part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0025147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4065" + +#### Added +- [obsolete cytoarchitectural part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0025147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4065](http://purl.obolibrary.org/obo/BIRNLEX_4065) + + +### obsolete cytoarchitectural part of retina `http://purl.obolibrary.org/obo/UBERON_0027227` +#### Removed +- [obsolete cytoarchitectural part of retina](http://purl.obolibrary.org/obo/UBERON_0027227) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005029" + +#### Added +- [obsolete cytoarchitectural part of retina](http://purl.obolibrary.org/obo/UBERON_0027227) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005029](http://purl.obolibrary.org/obo/NLXANAT_1005029) + + +### obsolete cytoarchitectural part of the cerebellum `http://purl.obolibrary.org/obo/UBERON_0023827` +#### Removed +- [obsolete cytoarchitectural part of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0023827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:987" + +#### Added +- [obsolete cytoarchitectural part of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0023827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_987](http://purl.obolibrary.org/obo/BIRNLEX_987) + + +### obsolete cytotrophoblastic cell `http://purl.obolibrary.org/obo/UBERON_0000427` +#### Removed +- [obsolete cytotrophoblastic cell](http://purl.obolibrary.org/obo/UBERON_0000427) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C38575" + +#### Added +- [obsolete cytotrophoblastic cell](http://purl.obolibrary.org/obo/UBERON_0000427) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C38575](http://purl.obolibrary.org/obo/NCIT_C38575) + + +### obsolete decidual cell `http://purl.obolibrary.org/obo/UBERON_0000449` +#### Removed +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C32429" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:86480" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C1511740" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Decidual_Cell" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0002770" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:2000002" + +#### Added +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_2000002](http://purl.obolibrary.org/obo/CL_2000002) + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0002770](http://purl.obolibrary.org/obo/BTO_0002770) + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C1511740](http://purl.obolibrary.org/obo/UMLS_C1511740) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Decidual_Cell" + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_86480](http://purl.obolibrary.org/obo/FMA_86480) + +- [obsolete decidual cell](http://purl.obolibrary.org/obo/UBERON_0000449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C32429](http://purl.obolibrary.org/obo/NCIT_C32429) + + +### obsolete deep blastomere `http://purl.obolibrary.org/obo/UBERON_2001473` +#### Removed +- [obsolete deep blastomere](http://purl.obolibrary.org/obo/UBERON_2001473) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "ZFA:0001473" + +#### Added +- [obsolete deep blastomere](http://purl.obolibrary.org/obo/UBERON_2001473) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ZFA_0001473](http://purl.obolibrary.org/obo/ZFA_0001473) + + +### obsolete deep vein of penis `http://purl.obolibrary.org/obo/UBERON_0039267` +#### Removed +- [obsolete deep vein of penis](http://purl.obolibrary.org/obo/UBERON_0039267) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006656" + +#### Added +- [obsolete deep vein of penis](http://purl.obolibrary.org/obo/UBERON_0039267) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [deep dorsal vein of penis](http://purl.obolibrary.org/obo/UBERON_0006656) + + +### obsolete deltopectoral crest `http://purl.obolibrary.org/obo/UBERON_3000736` +#### Removed +- [obsolete deltopectoral crest](http://purl.obolibrary.org/obo/UBERON_3000736) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002498" + +#### Added +- [obsolete deltopectoral crest](http://purl.obolibrary.org/obo/UBERON_3000736) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [deltopectoral crest](http://purl.obolibrary.org/obo/UBERON_0002498) + + +### obsolete dendrite `http://purl.obolibrary.org/obo/UBERON_0001023` +#### Removed +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1211023249" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C32447" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67314" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0011305" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0030425" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0001373" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A08.663.256" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005110" + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:749" + +#### Added +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1211023249](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1211023249) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_749](http://purl.obolibrary.org/obo/GAID_749) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0001373](http://purl.obolibrary.org/obo/TGMA_0001373) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0011305](http://purl.obolibrary.org/obo/UMLS_C0011305) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [OpenCyc_Mx4rviIdspwpEbGdrcN5Y29ycA](http://purl.obolibrary.org/obo/OpenCyc_Mx4rviIdspwpEbGdrcN5Y29ycA) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67314](http://purl.obolibrary.org/obo/FMA_67314) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C32447](http://purl.obolibrary.org/obo/NCIT_C32447) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0030425](http://purl.obolibrary.org/obo/GO_0030425) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005110](http://purl.obolibrary.org/obo/FBbt_00005110) + +- [obsolete dendrite](http://purl.obolibrary.org/obo/UBERON_0001023) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A08.663.256](http://purl.obolibrary.org/obo/MESH_A08.663.256) + + +### obsolete dense connective tissue `http://purl.obolibrary.org/obo/UBERON_3000121` +#### Removed +- [obsolete dense connective tissue](http://purl.obolibrary.org/obo/UBERON_3000121) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011823" + +#### Added +- [obsolete dense connective tissue](http://purl.obolibrary.org/obo/UBERON_3000121) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dense connective tissue](http://purl.obolibrary.org/obo/UBERON_0011823) + + +### obsolete developing epithelial placode `http://purl.obolibrary.org/obo/UBERON_0007497` +#### Removed +- [obsolete developing epithelial placode](http://purl.obolibrary.org/obo/UBERON_0007497) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005085" + +#### Added +- [obsolete developing epithelial placode](http://purl.obolibrary.org/obo/UBERON_0007497) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ectodermal placode](http://purl.obolibrary.org/obo/UBERON_0005085) + + +### obsolete developing esophageal region `http://purl.obolibrary.org/obo/UBERON_0009143` +#### Removed +- [obsolete developing esophageal region](http://purl.obolibrary.org/obo/UBERON_0009143) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001043" + +#### Added +- [obsolete developing esophageal region](http://purl.obolibrary.org/obo/UBERON_0009143) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [esophagus](http://purl.obolibrary.org/obo/UBERON_0001043) + + +### obsolete direct ossification `http://purl.obolibrary.org/obo/UBERON_4000136` +#### Removed +- [obsolete direct ossification](http://purl.obolibrary.org/obo/UBERON_4000136) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036072" + +#### Added +- [obsolete direct ossification](http://purl.obolibrary.org/obo/UBERON_4000136) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036072](http://purl.obolibrary.org/obo/GO_0036072) + + +### obsolete distal articular surface of radius `http://purl.obolibrary.org/obo/UBERON_7500088` +#### Removed +- [obsolete distal articular surface of radius](http://purl.obolibrary.org/obo/UBERON_7500088) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:7500080" + +#### Added +- [obsolete distal articular surface of radius](http://purl.obolibrary.org/obo/UBERON_7500088) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [articular surface for carpals](http://purl.obolibrary.org/obo/UBERON_7500080) + + +### obsolete distal-most point of medial condyle of femur `http://purl.obolibrary.org/obo/UBERON_7500033` +#### Removed +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009984" + +#### Added +- [obsolete distal-most point of medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_7500033) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [medial condyle of femur](http://purl.obolibrary.org/obo/UBERON_0009984) + + +### obsolete distal-most point of trochlea of humerus `http://purl.obolibrary.org/obo/UBERON_7500034` +#### Removed +- [obsolete distal-most point of trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_7500034) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000144" + +#### Added +- [obsolete distal-most point of trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_7500034) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [trochlea of humerus](http://purl.obolibrary.org/obo/UBERON_0000144) + + +### obsolete dorsal branch `http://purl.obolibrary.org/obo/UBERON_0000944` +#### Removed +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003051" + +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:76733" + +#### Added +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003051](http://purl.obolibrary.org/obo/FBbt_00003051) + +- [obsolete dorsal branch](http://purl.obolibrary.org/obo/UBERON_0000944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_76733](http://purl.obolibrary.org/obo/FMA_76733) + + +### obsolete dorsal fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001418` +#### Removed +- [obsolete dorsal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001418) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000177" + +#### Added +- [obsolete dorsal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001418) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dorsal fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000177) + + +### obsolete dorsal fin skeleton `http://purl.obolibrary.org/obo/UBERON_2001124` +#### Removed +- [obsolete dorsal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001124) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000168" + +#### Added +- [obsolete dorsal fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001124) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dorsal fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000168) + + +### obsolete dorsal nucleus `http://purl.obolibrary.org/obo/UBERON_2000197` +#### Removed +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008993" + +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000197" + +#### Added +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [habenular nucleus](http://purl.obolibrary.org/obo/UBERON_0008993) + +- [obsolete dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_2000197) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000197](http://purl.obolibrary.org/obo/ZFA_0000197) + + +### obsolete dorsal ramus of occulomotor nerve `http://purl.obolibrary.org/obo/UBERON_3010628` +#### Removed +- [obsolete dorsal ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010628) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0015162" + +#### Added +- [obsolete dorsal ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010628) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [superior branch of oculomotor nerve](http://purl.obolibrary.org/obo/UBERON_0015162) + + +### obsolete duct part of cochlear canal `http://purl.obolibrary.org/obo/UBERON_0024952` +#### Removed +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001855" + +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2560" + +#### Added +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cochlear duct of membranous labyrinth](http://purl.obolibrary.org/obo/UBERON_0001855) + +- [obsolete duct part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024952) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2560](http://purl.obolibrary.org/obo/BIRNLEX_2560) + + +### obsolete ectodermal cell `http://purl.obolibrary.org/obo/UBERON_3010554` +#### Removed +- [obsolete ectodermal cell](http://purl.obolibrary.org/obo/UBERON_3010554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000221" + +#### Added +- [obsolete ectodermal cell](http://purl.obolibrary.org/obo/UBERON_3010554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000221](http://purl.obolibrary.org/obo/CL_0000221) + + +### obsolete embryoid body `http://purl.obolibrary.org/obo/UBERON_0010263` +#### Removed +- [obsolete embryoid body](http://purl.obolibrary.org/obo/UBERON_0010263) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0001718" + +#### Added +- [obsolete embryoid body](http://purl.obolibrary.org/obo/UBERON_0010263) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0001718](http://purl.obolibrary.org/obo/BTO_0001718) + + +### obsolete embryonic germ layer derivative `http://purl.obolibrary.org/obo/UBERON_6000000` +#### Removed +- [obsolete embryonic germ layer derivative](http://purl.obolibrary.org/obo/UBERON_6000000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000000" + +#### Added +- [obsolete embryonic germ layer derivative](http://purl.obolibrary.org/obo/UBERON_6000000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000000](http://purl.obolibrary.org/obo/FBbt_00000000) + + +### obsolete embryonic hypochord `http://purl.obolibrary.org/obo/UBERON_3010625` +#### Removed +- [obsolete embryonic hypochord](http://purl.obolibrary.org/obo/UBERON_3010625) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003058" + +#### Added +- [obsolete embryonic hypochord](http://purl.obolibrary.org/obo/UBERON_3010625) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [hypochord](http://purl.obolibrary.org/obo/UBERON_0003058) + + +### obsolete embryonic segment `http://purl.obolibrary.org/obo/UBERON_0000928` +#### Removed +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000244" + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000244" + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000154" + +#### Added +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000154](http://purl.obolibrary.org/obo/FBbt_00000154) + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000244](http://purl.obolibrary.org/obo/MAT_0000244) + +- [obsolete embryonic segment](http://purl.obolibrary.org/obo/UBERON_0000928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000244](http://purl.obolibrary.org/obo/MIAA_0000244) + + +### obsolete empodium `http://purl.obolibrary.org/obo/UBERON_0003190` +#### Removed +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000288" + +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004659" + +#### Added +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004659](http://purl.obolibrary.org/obo/FBbt_00004659) + +- [obsolete empodium](http://purl.obolibrary.org/obo/UBERON_0003190) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000288](http://purl.obolibrary.org/obo/HAO_0000288) + + +### obsolete enameloid `http://purl.obolibrary.org/obo/UBERON_2005142` +#### Removed +- [obsolete enameloid](http://purl.obolibrary.org/obo/UBERON_2005142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011692" + +#### Added +- [obsolete enameloid](http://purl.obolibrary.org/obo/UBERON_2005142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [enameloid](http://purl.obolibrary.org/obo/UBERON_0011692) + + +### obsolete endochondral ossification `http://purl.obolibrary.org/obo/UBERON_4000143` +#### Removed +- [obsolete endochondral ossification](http://purl.obolibrary.org/obo/UBERON_4000143) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0001958" + +#### Added +- [obsolete endochondral ossification](http://purl.obolibrary.org/obo/UBERON_4000143) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0001958](http://purl.obolibrary.org/obo/GO_0001958) + + +### obsolete endocrine system component `http://purl.obolibrary.org/obo/UBERON_6007435` +#### Removed +- [obsolete endocrine system component](http://purl.obolibrary.org/obo/UBERON_6007435) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00007435" + +#### Added +- [obsolete endocrine system component](http://purl.obolibrary.org/obo/UBERON_6007435) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00007435](http://purl.obolibrary.org/obo/FBbt_00007435) + + +### obsolete endodermal cell `http://purl.obolibrary.org/obo/UBERON_3010555` +#### Removed +- [obsolete endodermal cell](http://purl.obolibrary.org/obo/UBERON_3010555) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000223" + +#### Added +- [obsolete endodermal cell](http://purl.obolibrary.org/obo/UBERON_3010555) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000223](http://purl.obolibrary.org/obo/CL_0000223) + + +### obsolete epimeron `http://purl.obolibrary.org/obo/UBERON_0003172` +#### Removed +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004556" + +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000299" + +#### Added +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004556](http://purl.obolibrary.org/obo/FBbt_00004556) + +- [obsolete epimeron](http://purl.obolibrary.org/obo/UBERON_0003172) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000299](http://purl.obolibrary.org/obo/HAO_0000299) + + +### obsolete epipharynx `http://purl.obolibrary.org/obo/UBERON_0003204` +#### Removed +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000301" + +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005750" + +#### Added +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005750](http://purl.obolibrary.org/obo/FBbt_00005750) + +- [obsolete epipharynx](http://purl.obolibrary.org/obo/UBERON_0003204) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000301](http://purl.obolibrary.org/obo/HAO_0000301) + + +### obsolete episternum `http://purl.obolibrary.org/obo/UBERON_0003171` +#### Removed +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000303" + +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004554" + +#### Added +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000303](http://purl.obolibrary.org/obo/HAO_0000303) + +- [obsolete episternum](http://purl.obolibrary.org/obo/UBERON_0003171) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004554](http://purl.obolibrary.org/obo/FBbt_00004554) + + +### obsolete epithelial cell `http://purl.obolibrary.org/obo/UBERON_3010274` +#### Removed +- [obsolete epithelial cell](http://purl.obolibrary.org/obo/UBERON_3010274) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000066" + +#### Added +- [obsolete epithelial cell](http://purl.obolibrary.org/obo/UBERON_3010274) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000066](http://purl.obolibrary.org/obo/CL_0000066) + + +### obsolete equine cannon bone `http://purl.obolibrary.org/obo/UBERON_0012263` +#### Removed +- [obsolete equine cannon bone](http://purl.obolibrary.org/obo/UBERON_0012263) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0013583" + +#### Added +- [obsolete equine cannon bone](http://purl.obolibrary.org/obo/UBERON_0012263) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [metapodium bone 3](http://purl.obolibrary.org/obo/UBERON_0013583) + + +### obsolete equine forelimb cannon bone `http://purl.obolibrary.org/obo/UBERON_0012264` +#### Removed +- [obsolete equine forelimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012264) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003647" + +#### Added +- [obsolete equine forelimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012264) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [metacarpal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003647) + + +### obsolete equine hindlimb cannon bone `http://purl.obolibrary.org/obo/UBERON_0012265` +#### Removed +- [obsolete equine hindlimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012265) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003652" + +#### Added +- [obsolete equine hindlimb cannon bone](http://purl.obolibrary.org/obo/UBERON_0012265) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [metatarsal bone of digit 3](http://purl.obolibrary.org/obo/UBERON_0003652) + + +### obsolete erythrophore `http://purl.obolibrary.org/obo/UBERON_3010593` +#### Removed +- [obsolete erythrophore](http://purl.obolibrary.org/obo/UBERON_3010593) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000574" + +#### Added +- [obsolete erythrophore](http://purl.obolibrary.org/obo/UBERON_3010593) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000574](http://purl.obolibrary.org/obo/CL_0000574) + + +### obsolete extracellular matrix `http://purl.obolibrary.org/obo/UBERON_4000022` +#### Removed +- [obsolete extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000022) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0031012" + +#### Added +- [obsolete extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000022) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0031012](http://purl.obolibrary.org/obo/GO_0031012) + + +### obsolete fascia dentata `http://purl.obolibrary.org/obo/UBERON_0035560` +#### Removed +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "neuronames:180" + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001885" + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0002615" + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1191" + +#### Added +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1191](http://purl.obolibrary.org/obo/BIRNLEX_1191) + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neuronames_180](http://purl.obolibrary.org/obo/neuronames_180) + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [dentate gyrus of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0001885) + +- [obsolete fascia dentata](http://purl.obolibrary.org/obo/UBERON_0035560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0002615](http://purl.obolibrary.org/obo/BTO_0002615) + + +### obsolete fat body `http://purl.obolibrary.org/obo/UBERON_0001014` +#### Removed +- [obsolete fat body](http://purl.obolibrary.org/obo/UBERON_0001014) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003917" + +#### Added +- [obsolete fat body](http://purl.obolibrary.org/obo/UBERON_0001014) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [arthropod fat body](http://purl.obolibrary.org/obo/UBERON_0003917) + + +### obsolete fibroblast `http://purl.obolibrary.org/obo/UBERON_3010288` +#### Removed +- [obsolete fibroblast](http://purl.obolibrary.org/obo/UBERON_3010288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000057" + +#### Added +- [obsolete fibroblast](http://purl.obolibrary.org/obo/UBERON_3010288) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000057](http://purl.obolibrary.org/obo/CL_0000057) + + +### obsolete first polar body `http://purl.obolibrary.org/obo/UBERON_0005444` +#### Removed +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0000541" + +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:18650" + +#### Added +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0000541](http://purl.obolibrary.org/obo/EHDAA2_0000541) + +- [obsolete first polar body](http://purl.obolibrary.org/obo/UBERON_0005444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_18650](http://purl.obolibrary.org/obo/FMA_18650) + + +### obsolete follicle cell `http://purl.obolibrary.org/obo/UBERON_3010289` +#### Removed +- [obsolete follicle cell](http://purl.obolibrary.org/obo/UBERON_3010289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000477" + +#### Added +- [obsolete follicle cell](http://purl.obolibrary.org/obo/UBERON_3010289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000477](http://purl.obolibrary.org/obo/CL_0000477) + + +### obsolete foramen `http://purl.obolibrary.org/obo/UBERON_0003151` +#### Removed +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004478" + +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000345" + +#### Added +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000345](http://purl.obolibrary.org/obo/HAO_0000345) + +- [obsolete foramen](http://purl.obolibrary.org/obo/UBERON_0003151) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004478](http://purl.obolibrary.org/obo/FBbt_00004478) + + +### obsolete forebrain ventricle `http://purl.obolibrary.org/obo/UBERON_2001259` +#### Removed +- [obsolete forebrain ventricle](http://purl.obolibrary.org/obo/UBERON_2001259) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006284" + +#### Added +- [obsolete forebrain ventricle](http://purl.obolibrary.org/obo/UBERON_2001259) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [early prosencephalic vesicle](http://purl.obolibrary.org/obo/UBERON_0006284) + + +### obsolete fornix `http://purl.obolibrary.org/obo/UBERON_0001345` +#### Removed +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000052" + +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000051" + +#### Added +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fornix of vagina](http://purl.obolibrary.org/obo/UBERON_0000051) + +- [obsolete fornix](http://purl.obolibrary.org/obo/UBERON_0001345) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [fornix of brain](http://purl.obolibrary.org/obo/UBERON_0000052) + + +### obsolete frontal artery `http://purl.obolibrary.org/obo/UBERON_0009656` +#### Removed +- [obsolete frontal artery](http://purl.obolibrary.org/obo/UBERON_0009656) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0001960" + +#### Added +- [obsolete frontal artery](http://purl.obolibrary.org/obo/UBERON_0009656) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0001960](http://purl.obolibrary.org/obo/MA_0001960) + + +### obsolete frontal-parietal joint `http://purl.obolibrary.org/obo/UBERON_2005255` +#### Removed +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016631" + +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0005608" + +#### Added +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [actinopterygian frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_0016631) + +- [obsolete frontal-parietal joint](http://purl.obolibrary.org/obo/UBERON_2005255) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0005608](http://purl.obolibrary.org/obo/ZFA_0005608) + + +### obsolete furcasternum `http://purl.obolibrary.org/obo/UBERON_0003174` +#### Removed +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000367" + +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004570" + +#### Added +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004570](http://purl.obolibrary.org/obo/FBbt_00004570) + +- [obsolete furcasternum](http://purl.obolibrary.org/obo/UBERON_0003174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000367](http://purl.obolibrary.org/obo/HAO_0000367) + + +### obsolete future medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0010288` +#### Removed +- [obsolete future medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0010288) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001896" + +#### Added +- [obsolete future medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0010288) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0001896) + + +### obsolete gamete `http://purl.obolibrary.org/obo/UBERON_3010291` +#### Removed +- [obsolete gamete](http://purl.obolibrary.org/obo/UBERON_3010291) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000300" + +#### Added +- [obsolete gamete](http://purl.obolibrary.org/obo/UBERON_3010291) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000300](http://purl.obolibrary.org/obo/CL_0000300) + + +### obsolete gasserian ganglion `http://purl.obolibrary.org/obo/UBERON_3011045` +#### Removed +- [obsolete gasserian ganglion](http://purl.obolibrary.org/obo/UBERON_3011045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001675" + +#### Added +- [obsolete gasserian ganglion](http://purl.obolibrary.org/obo/UBERON_3011045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [trigeminal ganglion](http://purl.obolibrary.org/obo/UBERON_0001675) + + +### obsolete gastrula cell `http://purl.obolibrary.org/obo/UBERON_3010552` +#### Removed +- [obsolete gastrula cell](http://purl.obolibrary.org/obo/UBERON_3010552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000361" + +#### Added +- [obsolete gastrula cell](http://purl.obolibrary.org/obo/UBERON_3010552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000361](http://purl.obolibrary.org/obo/CL_0000361) + + +### obsolete gena `http://purl.obolibrary.org/obo/UBERON_0003154` +#### Removed +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000371" + +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004491" + +#### Added +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004491](http://purl.obolibrary.org/obo/FBbt_00004491) + +- [obsolete gena](http://purl.obolibrary.org/obo/UBERON_0003154) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000371](http://purl.obolibrary.org/obo/HAO_0000371) + + +### obsolete geniculate nucleus `http://purl.obolibrary.org/obo/UBERON_0012174` +#### Removed +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001927" + +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001926" + +#### Added +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0001927) + +- [obsolete geniculate nucleus](http://purl.obolibrary.org/obo/UBERON_0012174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [lateral geniculate body](http://purl.obolibrary.org/obo/UBERON_0001926) + + +### obsolete genital system `http://purl.obolibrary.org/obo/UBERON_3011048` +#### Removed +- [obsolete genital system](http://purl.obolibrary.org/obo/UBERON_3011048) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000990" + +#### Added +- [obsolete genital system](http://purl.obolibrary.org/obo/UBERON_3011048) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) + + +### obsolete germ cell `http://purl.obolibrary.org/obo/UBERON_3010292` +#### Removed +- [obsolete germ cell](http://purl.obolibrary.org/obo/UBERON_3010292) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000586" + +#### Added +- [obsolete germ cell](http://purl.obolibrary.org/obo/UBERON_3010292) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000586](http://purl.obolibrary.org/obo/CL_0000586) + + +### obsolete germ layer / neural crest derived structure `http://purl.obolibrary.org/obo/UBERON_0010317` +#### Removed +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010313" + +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000923" + +#### Added +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [germ layer](http://purl.obolibrary.org/obo/UBERON_0000923) + +- [obsolete germ layer / neural crest derived structure](http://purl.obolibrary.org/obo/UBERON_0010317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neural crest-derived structure](http://purl.obolibrary.org/obo/UBERON_0010313) + + +### obsolete germ line cell `http://purl.obolibrary.org/obo/UBERON_3010290` +#### Removed +- [obsolete germ line cell](http://purl.obolibrary.org/obo/UBERON_3010290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000039" + +#### Added +- [obsolete germ line cell](http://purl.obolibrary.org/obo/UBERON_3010290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000039](http://purl.obolibrary.org/obo/CL_0000039) + + +### obsolete gland of anal sac `http://purl.obolibrary.org/obo/UBERON_0011253` +#### Removed +- [obsolete gland of anal sac](http://purl.obolibrary.org/obo/UBERON_0011253) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004760" + +#### Added +- [obsolete gland of anal sac](http://purl.obolibrary.org/obo/UBERON_0011253) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [gland of anal canal](http://purl.obolibrary.org/obo/UBERON_0004760) + + +### obsolete globe `http://purl.obolibrary.org/obo/UBERON_3010346` +#### Removed +- [obsolete globe](http://purl.obolibrary.org/obo/UBERON_3010346) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010230" + +#### Added +- [obsolete globe](http://purl.obolibrary.org/obo/UBERON_3010346) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [eyeball of camera-type eye](http://purl.obolibrary.org/obo/UBERON_0010230) + + +### obsolete glomerular visceral epithelium `http://purl.obolibrary.org/obo/UBERON_0006852` +#### Removed +- [obsolete glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0006852) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005751" + +#### Added +- [obsolete glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0006852) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [glomerular visceral epithelium](http://purl.obolibrary.org/obo/UBERON_0005751) + + +### obsolete goblet cell `http://purl.obolibrary.org/obo/UBERON_3010635` +#### Removed +- [obsolete goblet cell](http://purl.obolibrary.org/obo/UBERON_3010635) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000160" + +#### Added +- [obsolete goblet cell](http://purl.obolibrary.org/obo/UBERON_3010635) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000160](http://purl.obolibrary.org/obo/CL_0000160) + + +### obsolete gravid stage `http://purl.obolibrary.org/obo/UBERON_0009096` +#### Removed +- [obsolete gravid stage](http://purl.obolibrary.org/obo/UBERON_0009096) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009097" + +#### Added +- [obsolete gravid stage](http://purl.obolibrary.org/obo/UBERON_0009096) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [gravid organism](http://purl.obolibrary.org/obo/UBERON_0009097) + + +### obsolete gross anatomical part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0023783` +#### Removed +- [obsolete gross anatomical part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023783) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:940" + +#### Added +- [obsolete gross anatomical part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0023783) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_940](http://purl.obolibrary.org/obo/BIRNLEX_940) + + +### obsolete head mesoderm `http://purl.obolibrary.org/obo/UBERON_0005280` +#### Removed +- [obsolete head mesoderm](http://purl.obolibrary.org/obo/UBERON_0005280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006904" + +#### Added +- [obsolete head mesoderm](http://purl.obolibrary.org/obo/UBERON_0005280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [head mesenchyme from mesoderm](http://purl.obolibrary.org/obo/UBERON_0006904) + + +### obsolete head muscle `http://purl.obolibrary.org/obo/UBERON_2002198` +#### Removed +- [obsolete head muscle](http://purl.obolibrary.org/obo/UBERON_2002198) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002376" + +#### Added +- [obsolete head muscle](http://purl.obolibrary.org/obo/UBERON_2002198) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cranial muscle](http://purl.obolibrary.org/obo/UBERON_0002376) + + +### obsolete head of organ `http://purl.obolibrary.org/obo/UBERON_0001559` +#### Removed +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:45729" + +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0000581" + +#### Added +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_45729](http://purl.obolibrary.org/obo/FMA_45729) + +- [obsolete head of organ](http://purl.obolibrary.org/obo/UBERON_0001559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0000581](http://purl.obolibrary.org/obo/MA_0000581) + + +### obsolete hematopoietic stem cell `http://purl.obolibrary.org/obo/UBERON_3010323` +#### Removed +- [obsolete hematopoietic stem cell](http://purl.obolibrary.org/obo/UBERON_3010323) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000037" + +#### Added +- [obsolete hematopoietic stem cell](http://purl.obolibrary.org/obo/UBERON_3010323) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000037](http://purl.obolibrary.org/obo/CL_0000037) + + +### obsolete hemisphere parts of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0024907` +#### Removed +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001869" + +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1796" + +#### Added +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cerebral hemisphere](http://purl.obolibrary.org/obo/UBERON_0001869) + +- [obsolete hemisphere parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024907) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1796](http://purl.obolibrary.org/obo/BIRNLEX_1796) + + +### obsolete hemispheric parts of the cerebellar cortex `http://purl.obolibrary.org/obo/UBERON_0024449` +#### Removed +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1334" + +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002245" + +#### Added +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cerebellar hemisphere](http://purl.obolibrary.org/obo/UBERON_0002245) + +- [obsolete hemispheric parts of the cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024449) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1334](http://purl.obolibrary.org/obo/BIRNLEX_1334) + + +### obsolete hindbrain neural fold `http://purl.obolibrary.org/obo/UBERON_0005265` +#### Removed +- [obsolete hindbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005265) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0001211" + +#### Added +- [obsolete hindbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005265) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0001211](http://purl.obolibrary.org/obo/VHOG_0001211) + + +### obsolete horizontal septum `http://purl.obolibrary.org/obo/UBERON_2002131` +#### Removed +- [obsolete horizontal septum](http://purl.obolibrary.org/obo/UBERON_2002131) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003901" + +#### Added +- [obsolete horizontal septum](http://purl.obolibrary.org/obo/UBERON_2002131) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [horizontal septum](http://purl.obolibrary.org/obo/UBERON_0003901) + + +### obsolete ilial corpus `http://purl.obolibrary.org/obo/UBERON_3000775` +#### Removed +- [obsolete ilial corpus](http://purl.obolibrary.org/obo/UBERON_3000775) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010747" + +#### Added +- [obsolete ilial corpus](http://purl.obolibrary.org/obo/UBERON_3000775) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [body of ilium](http://purl.obolibrary.org/obo/UBERON_0010747) + + +### obsolete iliocostalis musculature `http://purl.obolibrary.org/obo/UBERON_0004483` +#### Removed +- [obsolete iliocostalis musculature](http://purl.obolibrary.org/obo/UBERON_0004483) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:33062" + +#### Added +- [obsolete iliocostalis musculature](http://purl.obolibrary.org/obo/UBERON_0004483) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_33062](http://purl.obolibrary.org/obo/FMA_33062) + + +### obsolete incisive process of premaxilla `http://purl.obolibrary.org/obo/UBERON_0018327` +#### Removed +- [obsolete incisive process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0018327) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0017249" + +#### Added +- [obsolete incisive process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0018327) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [incisive process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0017249) + + +### obsolete insect adult clypeo-labral anlage `http://purl.obolibrary.org/obo/UBERON_6004203` +#### Removed +- [obsolete insect adult clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6004203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6005514" + +#### Added +- [obsolete insect adult clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6004203) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect adult clypeo-labral primordium](http://purl.obolibrary.org/obo/UBERON_6005514) + + +### obsolete insect anlage in statu nascendi `http://purl.obolibrary.org/obo/UBERON_6005413` +#### Removed +- [obsolete insect anlage in statu nascendi](http://purl.obolibrary.org/obo/UBERON_6005413) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0007688" + +#### Added +- [obsolete insect anlage in statu nascendi](http://purl.obolibrary.org/obo/UBERON_6005413) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [anlage](http://purl.obolibrary.org/obo/UBERON_0007688) + + +### obsolete insect anterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001792` +#### Removed +- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" + +#### Added +- [obsolete insect anterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001792) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) + + +### obsolete insect anterior-posterior subdivision of organism `http://purl.obolibrary.org/obo/UBERON_6057001` +#### Removed +- [obsolete insect anterior-posterior subdivision of organism](http://purl.obolibrary.org/obo/UBERON_6057001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011676" + +#### Added +- [obsolete insect anterior-posterior subdivision of organism](http://purl.obolibrary.org/obo/UBERON_6057001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [subdivision of organism along main body axis](http://purl.obolibrary.org/obo/UBERON_0011676) + + +### obsolete insect clypeo-labral anlage `http://purl.obolibrary.org/obo/UBERON_6005439` +#### Removed +- [obsolete insect clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6005439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6005538" + +#### Added +- [obsolete insect clypeo-labral anlage](http://purl.obolibrary.org/obo/UBERON_6005439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect clypeo-labral primordium](http://purl.obolibrary.org/obo/UBERON_6005538) + + +### obsolete insect dorsal ectoderm anlage `http://purl.obolibrary.org/obo/UBERON_6005428` +#### Removed +- [obsolete insect dorsal ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005428) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6005427" + +#### Added +- [obsolete insect dorsal ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005428) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect ectoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005427) + + +### obsolete insect dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001791` +#### Removed +- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" + +#### Added +- [obsolete insect dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) + + +### obsolete insect histoblast `http://purl.obolibrary.org/obo/UBERON_6001789` +#### Removed +- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000373" + +#### Added +- [obsolete insect histoblast](http://purl.obolibrary.org/obo/UBERON_6001789) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000373](http://purl.obolibrary.org/obo/CL_0000373) + + +### obsolete insect pharynx `http://purl.obolibrary.org/obo/UBERON_60005380` +#### Removed +- [obsolete insect pharynx](http://purl.obolibrary.org/obo/UBERON_60005380) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:6005380" + +#### Added +- [obsolete insect pharynx](http://purl.obolibrary.org/obo/UBERON_60005380) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [insect pharynx](http://purl.obolibrary.org/obo/UBERON_6005380) + + +### obsolete insect posterior dorsal histoblast nest abdominal `http://purl.obolibrary.org/obo/UBERON_6001809` +#### Removed +- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001790" + +#### Added +- [obsolete insect posterior dorsal histoblast nest abdominal](http://purl.obolibrary.org/obo/UBERON_6001809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect histoblast nest](http://purl.obolibrary.org/obo/UBERON_6001790) + + +### obsolete insect trunk mesoderm anlage `http://purl.obolibrary.org/obo/UBERON_6005436` +#### Removed +- [obsolete insect trunk mesoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005436) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6000128" + +#### Added +- [obsolete insect trunk mesoderm anlage](http://purl.obolibrary.org/obo/UBERON_6005436) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect trunk mesoderm](http://purl.obolibrary.org/obo/UBERON_6000128) + + +### obsolete insect visual anlage `http://purl.obolibrary.org/obo/UBERON_6005434` +#### Removed +- [obsolete insect visual anlage](http://purl.obolibrary.org/obo/UBERON_6005434) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:6001059" + +#### Added +- [obsolete insect visual anlage](http://purl.obolibrary.org/obo/UBERON_6005434) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [insect visual primordium](http://purl.obolibrary.org/obo/UBERON_6001059) + + +### obsolete intercalar `http://purl.obolibrary.org/obo/UBERON_4000024` +#### Removed +- [obsolete intercalar](http://purl.obolibrary.org/obo/UBERON_4000024) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2000474" + +#### Added +- [obsolete intercalar](http://purl.obolibrary.org/obo/UBERON_4000024) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [intercalar](http://purl.obolibrary.org/obo/UBERON_2000474) + + +### obsolete intergluteal cleft `http://purl.obolibrary.org/obo/UBERON_0016411` +#### Removed +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0036013" + +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0036014" + +#### Added +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [gluteal sulcus](http://purl.obolibrary.org/obo/UBERON_0036014) + +- [obsolete intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0016411) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [intergluteal cleft](http://purl.obolibrary.org/obo/UBERON_0036013) + + +### obsolete intermediate filament `http://purl.obolibrary.org/obo/UBERON_0003000` +#### Removed +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0021770" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:1079" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13248" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:63851" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A11.284.195.190.750.410" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:879" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005882" + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao952483289" + +#### Added +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0021770](http://purl.obolibrary.org/obo/UMLS_C0021770) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_1079](http://purl.obolibrary.org/obo/GAID_1079) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_879](http://purl.obolibrary.org/obo/BIRNLEX_879) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13248](http://purl.obolibrary.org/obo/NCIT_C13248) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A11.284.195.190.750.410](http://purl.obolibrary.org/obo/MESH_A11.284.195.190.750.410) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_63851](http://purl.obolibrary.org/obo/FMA_63851) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao952483289](http://purl.obolibrary.org/obo/NIF_Subcellular_sao952483289) + +- [obsolete intermediate filament](http://purl.obolibrary.org/obo/UBERON_0003000) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005882](http://purl.obolibrary.org/obo/GO_0005882) + + +### obsolete interneuron spinal cord `http://purl.obolibrary.org/obo/UBERON_2000778` +#### Removed +- [obsolete interneuron spinal cord](http://purl.obolibrary.org/obo/UBERON_2000778) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0005000" + +#### Added +- [obsolete interneuron spinal cord](http://purl.obolibrary.org/obo/UBERON_2000778) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0005000](http://purl.obolibrary.org/obo/CL_0005000) + + +### obsolete intestine muscle `http://purl.obolibrary.org/obo/UBERON_0000954` +#### Removed +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003537" + +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005796" + +#### Added +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005796](http://purl.obolibrary.org/obo/WBbt_0005796) + +- [obsolete intestine muscle](http://purl.obolibrary.org/obo/UBERON_0000954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003537](http://purl.obolibrary.org/obo/FBbt_00003537) + + +### obsolete intramembranous ossification `http://purl.obolibrary.org/obo/UBERON_4000141` +#### Removed +- [obsolete intramembranous ossification](http://purl.obolibrary.org/obo/UBERON_4000141) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0001957" + +#### Added +- [obsolete intramembranous ossification](http://purl.obolibrary.org/obo/UBERON_4000141) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0001957](http://purl.obolibrary.org/obo/GO_0001957) + + +### obsolete iridophore `http://purl.obolibrary.org/obo/UBERON_3010318` +#### Removed +- [obsolete iridophore](http://purl.obolibrary.org/obo/UBERON_3010318) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000431" + +#### Added +- [obsolete iridophore](http://purl.obolibrary.org/obo/UBERON_3010318) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000431](http://purl.obolibrary.org/obo/CL_0000431) + + +### obsolete jointed/prehensile appendage `http://purl.obolibrary.org/obo/UBERON_0005896` +#### Removed +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ncithesaurus:Extremities" + +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AEO:0000172" + +#### Added +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ncithesaurus_Extremities](http://purl.obolibrary.org/obo/ncithesaurus_Extremities) + +- [obsolete jointed/prehensile appendage](http://purl.obolibrary.org/obo/UBERON_0005896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AEO_0000172](http://purl.obolibrary.org/obo/AEO_0000172) + + +### obsolete labial gland `http://purl.obolibrary.org/obo/UBERON_0000385` +#### Removed +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71613" + +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000449" + +#### Added +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000449](http://purl.obolibrary.org/obo/HAO_0000449) + +- [obsolete labial gland](http://purl.obolibrary.org/obo/UBERON_0000385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71613](http://purl.obolibrary.org/obo/FMA_71613) + + +### obsolete labial sensillum `http://purl.obolibrary.org/obo/UBERON_0000943` +#### Removed +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00002721" + +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005107" + +#### Added +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00002721](http://purl.obolibrary.org/obo/FBbt_00002721) + +- [obsolete labial sensillum](http://purl.obolibrary.org/obo/UBERON_0000943) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005107](http://purl.obolibrary.org/obo/WBbt_0005107) + + +### obsolete lacinia `http://purl.obolibrary.org/obo/UBERON_0003167` +#### Removed +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000457" + +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004536" + +#### Added +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000457](http://purl.obolibrary.org/obo/HAO_0000457) + +- [obsolete lacinia](http://purl.obolibrary.org/obo/UBERON_0003167) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004536](http://purl.obolibrary.org/obo/FBbt_00004536) + + +### obsolete lacrimal `http://purl.obolibrary.org/obo/UBERON_3010146` +#### Removed +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "AAO:EJS" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [label](http://www.w3.org/2000/01/rdf-schema#label) "lacrimal" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) SubClassOf [nasal skeleton](http://purl.obolibrary.org/obo/UBERON_0006813) + +#### Added +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [deprecated](http://www.w3.org/2002/07/owl#deprecated) true + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0000233](http://purl.obolibrary.org/obo/IAO_0000233) "https://github.com/obophenotype/uberon/issues/2804" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "The synonym of this term has been merged into 'lacrimal bone'." + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lacrimal bone](http://purl.obolibrary.org/obo/UBERON_0001680) + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete lacrimal" + +- [obsolete lacrimal](http://purl.obolibrary.org/obo/UBERON_3010146) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "AAO:EJS" + + +### obsolete lamina II of gray matter of spinal cord `http://purl.obolibrary.org/obo/UBERON_0016573` +#### Removed +- [obsolete lamina II of gray matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0016573) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002181" + +#### Added +- [obsolete lamina II of gray matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0016573) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [substantia gelatinosa](http://purl.obolibrary.org/obo/UBERON_0002181) + + +### obsolete larval abdomen `http://purl.obolibrary.org/obo/UBERON_0003141` +#### Removed +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001746" + +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000460" + +#### Added +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000460](http://purl.obolibrary.org/obo/HAO_0000460) + +- [obsolete larval abdomen](http://purl.obolibrary.org/obo/UBERON_0003141) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001746](http://purl.obolibrary.org/obo/FBbt_00001746) + + +### obsolete larval structure `http://purl.obolibrary.org/obo/UBERON_0011771` +#### Removed +- [obsolete larval structure](http://purl.obolibrary.org/obo/UBERON_0011771) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0000265" + +#### Added +- [obsolete larval structure](http://purl.obolibrary.org/obo/UBERON_0011771) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0000265](http://purl.obolibrary.org/obo/AAO_0000265) + + +### obsolete larval tagma `http://purl.obolibrary.org/obo/UBERON_0003139` +#### Removed +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000462" + +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001728" + +#### Added +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001728](http://purl.obolibrary.org/obo/FBbt_00001728) + +- [obsolete larval tagma](http://purl.obolibrary.org/obo/UBERON_0003139) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000462](http://purl.obolibrary.org/obo/HAO_0000462) + + +### obsolete larval thorax `http://purl.obolibrary.org/obo/UBERON_0003140` +#### Removed +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000463" + +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001741" + +#### Added +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000463](http://purl.obolibrary.org/obo/HAO_0000463) + +- [obsolete larval thorax](http://purl.obolibrary.org/obo/UBERON_0003140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001741](http://purl.obolibrary.org/obo/FBbt_00001741) + + +### obsolete late proximal tubule `http://purl.obolibrary.org/obo/UBERON_3011122` +#### Removed +- [obsolete late proximal tubule](http://purl.obolibrary.org/obo/UBERON_3011122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009622" + +#### Added +- [obsolete late proximal tubule](http://purl.obolibrary.org/obo/UBERON_3011122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pronephric proximal straight tubule](http://purl.obolibrary.org/obo/UBERON_0009622) + + +### obsolete lateral line receptor `http://purl.obolibrary.org/obo/UBERON_3010705` +#### Removed +- [obsolete lateral line receptor](http://purl.obolibrary.org/obo/UBERON_3010705) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0008904" + +#### Added +- [obsolete lateral line receptor](http://purl.obolibrary.org/obo/UBERON_3010705) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neuromast](http://purl.obolibrary.org/obo/UBERON_0008904) + + +### obsolete lateral line receptor organ `http://purl.obolibrary.org/obo/UBERON_3001001` +#### Removed +- [obsolete lateral line receptor organ](http://purl.obolibrary.org/obo/UBERON_3001001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0008904" + +#### Added +- [obsolete lateral line receptor organ](http://purl.obolibrary.org/obo/UBERON_3001001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neuromast](http://purl.obolibrary.org/obo/UBERON_0008904) + + +### obsolete lateral mesoderm `http://purl.obolibrary.org/obo/UBERON_2001065` +#### Removed +- [obsolete lateral mesoderm](http://purl.obolibrary.org/obo/UBERON_2001065) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003081" + +#### Added +- [obsolete lateral mesoderm](http://purl.obolibrary.org/obo/UBERON_2001065) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lateral plate mesoderm](http://purl.obolibrary.org/obo/UBERON_0003081) + + +### obsolete left side of organism `http://purl.obolibrary.org/obo/UBERON_0004531` +#### Removed +- [obsolete left side of organism](http://purl.obolibrary.org/obo/UBERON_0004531) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BSPO:0000000" + +#### Added +- [obsolete left side of organism](http://purl.obolibrary.org/obo/UBERON_0004531) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BSPO_0000000](http://purl.obolibrary.org/obo/BSPO_0000000) + + +### obsolete leg joint `http://purl.obolibrary.org/obo/UBERON_0004174` +#### Removed +- [obsolete leg joint](http://purl.obolibrary.org/obo/UBERON_0004174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003657" + +#### Added +- [obsolete leg joint](http://purl.obolibrary.org/obo/UBERON_0004174) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [limb joint](http://purl.obolibrary.org/obo/UBERON_0003657) + + +### obsolete lens vesicle capsule `http://purl.obolibrary.org/obo/UBERON_0005714` +#### Removed +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001804" + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:4739" + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "RETIRED_EHDAA2:0000985" + +#### Added +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [RETIRED_EHDAA2_0000985](http://purl.obolibrary.org/obo/RETIRED_EHDAA2_0000985) + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_4739](http://purl.obolibrary.org/obo/EHDAA_4739) + +- [obsolete lens vesicle capsule](http://purl.obolibrary.org/obo/UBERON_0005714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [capsule of lens](http://purl.obolibrary.org/obo/UBERON_0001804) + + +### obsolete lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001554` +#### Removed +- [obsolete lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000172" + +#### Added +- [obsolete lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001554) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000172) + + +### obsolete leydig cells `http://purl.obolibrary.org/obo/UBERON_3010627` +#### Removed +- [obsolete leydig cells](http://purl.obolibrary.org/obo/UBERON_3010627) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000178" + +#### Added +- [obsolete leydig cells](http://purl.obolibrary.org/obo/UBERON_3010627) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000178](http://purl.obolibrary.org/obo/CL_0000178) + + +### obsolete ligament `http://purl.obolibrary.org/obo/UBERON_0001475` +#### Removed +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002360" + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:30319" + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000211" + +#### Added +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ligament](http://purl.obolibrary.org/obo/UBERON_0000211) + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_30319](http://purl.obolibrary.org/obo/FMA_30319) + +- [obsolete ligament](http://purl.obolibrary.org/obo/UBERON_0001475) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [meninx](http://purl.obolibrary.org/obo/UBERON_0002360) + + +### obsolete limb of embryo `http://purl.obolibrary.org/obo/UBERON_0003285` +#### Removed +- [obsolete limb of embryo](http://purl.obolibrary.org/obo/UBERON_0003285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0002101" + +#### Added +- [obsolete limb of embryo](http://purl.obolibrary.org/obo/UBERON_0003285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [limb](http://purl.obolibrary.org/obo/UBERON_0002101) + + +### obsolete line from caundal-sacral region of the vertebral column to the last vertebra `http://purl.obolibrary.org/obo/UBERON_7500036` +#### Removed +- [obsolete line from caundal-sacral region of the vertebral column to the last vertebra](http://purl.obolibrary.org/obo/UBERON_7500036) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "OBA:VT0002758" + +#### Added +- [obsolete line from caundal-sacral region of the vertebral column to the last vertebra](http://purl.obolibrary.org/obo/UBERON_7500036) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [OBA_VT0002758](http://purl.obolibrary.org/obo/OBA_VT0002758) + + +### obsolete line from helix of outer ear to intertragus incisure `http://purl.obolibrary.org/obo/UBERON_7500037` +#### Removed +- [obsolete line from helix of outer ear to intertragus incisure](http://purl.obolibrary.org/obo/UBERON_7500037) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000005" + +#### Added +- [obsolete line from helix of outer ear to intertragus incisure](http://purl.obolibrary.org/obo/UBERON_7500037) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000005](http://purl.obolibrary.org/obo/FOVT_0000005) + + +### obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot `http://purl.obolibrary.org/obo/UBERON_7500038` +#### Removed +- [obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500038) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000003" + +#### Added +- [obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500038) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000003](http://purl.obolibrary.org/obo/FOVT_0000003) + + +### obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot `http://purl.obolibrary.org/obo/UBERON_7500042` +#### Removed +- [obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500042) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000004" + +#### Added +- [obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot](http://purl.obolibrary.org/obo/UBERON_7500042) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000004](http://purl.obolibrary.org/obo/FOVT_0000004) + + +### obsolete line from tip of nose to the caudal-sacral region of the vertebral column `http://purl.obolibrary.org/obo/UBERON_7500043` +#### Removed +- [obsolete line from tip of nose to the caudal-sacral region of the vertebral column](http://purl.obolibrary.org/obo/UBERON_7500043) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000002" + +#### Added +- [obsolete line from tip of nose to the caudal-sacral region of the vertebral column](http://purl.obolibrary.org/obo/UBERON_7500043) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000002](http://purl.obolibrary.org/obo/FOVT_0000002) + + +### obsolete line from tip of nose to the posterior-most part of the last caudal vertebra `http://purl.obolibrary.org/obo/UBERON_7500044` +#### Removed +- [obsolete line from tip of nose to the posterior-most part of the last caudal vertebra](http://purl.obolibrary.org/obo/UBERON_7500044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000001" + +#### Added +- [obsolete line from tip of nose to the posterior-most part of the last caudal vertebra](http://purl.obolibrary.org/obo/UBERON_7500044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000001](http://purl.obolibrary.org/obo/FOVT_0000001) + + +### obsolete line from trochlea of humerus to proximal head of humerus `http://purl.obolibrary.org/obo/UBERON_7500051` +#### Removed +- [obsolete line from trochlea of humerus to proximal head of humerus](http://purl.obolibrary.org/obo/UBERON_7500051) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000008" + +#### Added +- [obsolete line from trochlea of humerus to proximal head of humerus](http://purl.obolibrary.org/obo/UBERON_7500051) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000008](http://purl.obolibrary.org/obo/FOVT_0000008) + + +### obsolete line from trochlea of humerus to ventral tubercle of humerus `http://purl.obolibrary.org/obo/UBERON_7500060` +#### Removed +- [obsolete line from trochlea of humerus to ventral tubercle of humerus](http://purl.obolibrary.org/obo/UBERON_7500060) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000009" + +#### Added +- [obsolete line from trochlea of humerus to ventral tubercle of humerus](http://purl.obolibrary.org/obo/UBERON_7500060) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000009](http://purl.obolibrary.org/obo/FOVT_0000009) + + +### obsolete line of medial condyle of femur to greater trochanter `http://purl.obolibrary.org/obo/UBERON_7500045` +#### Removed +- [obsolete line of medial condyle of femur to greater trochanter](http://purl.obolibrary.org/obo/UBERON_7500045) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000006" + +#### Added +- [obsolete line of medial condyle of femur to greater trochanter](http://purl.obolibrary.org/obo/UBERON_7500045) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000006](http://purl.obolibrary.org/obo/FOVT_0000006) + + +### obsolete line of medial condyle of femur to head of femur `http://purl.obolibrary.org/obo/UBERON_7500050` +#### Removed +- [obsolete line of medial condyle of femur to head of femur](http://purl.obolibrary.org/obo/UBERON_7500050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FOVT:0000007" + +#### Added +- [obsolete line of medial condyle of femur to head of femur](http://purl.obolibrary.org/obo/UBERON_7500050) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FOVT_0000007](http://purl.obolibrary.org/obo/FOVT_0000007) + + +### obsolete lingual cusp of tooth `http://purl.obolibrary.org/obo/UBERON_0018280` +#### Removed +- [obsolete lingual cusp of tooth](http://purl.obolibrary.org/obo/UBERON_0018280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0016929" + +#### Added +- [obsolete lingual cusp of tooth](http://purl.obolibrary.org/obo/UBERON_0018280) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [lingual cusp of tooth](http://purl.obolibrary.org/obo/UBERON_0016929) + + +### obsolete lipid droplet `http://purl.obolibrary.org/obo/UBERON_0000919` +#### Removed +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0005811" + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005811" + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62962" + +#### Added +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62962](http://purl.obolibrary.org/obo/FMA_62962) + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0005811](http://purl.obolibrary.org/obo/GO_0005811) + +- [obsolete lipid droplet](http://purl.obolibrary.org/obo/UBERON_0000919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005811](http://purl.obolibrary.org/obo/GO_0005811) + + +### obsolete lobe parts of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0003022` +#### Removed +- [obsolete lobe parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0003022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:68603" + +#### Added +- [obsolete lobe parts of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0003022) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_68603](http://purl.obolibrary.org/obo/FMA_68603) + + +### obsolete locomotive weight-bearing appendage `http://purl.obolibrary.org/obo/UBERON_0005894` +#### Removed +- [obsolete locomotive weight-bearing appendage](http://purl.obolibrary.org/obo/UBERON_0005894) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000026" + +#### Added +- [obsolete locomotive weight-bearing appendage](http://purl.obolibrary.org/obo/UBERON_0005894) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [appendage](http://purl.obolibrary.org/obo/UBERON_0000026) + + +### obsolete lymph organ `http://purl.obolibrary.org/obo/UBERON_0005180` +#### Removed +- [obsolete lymph organ](http://purl.obolibrary.org/obo/UBERON_0005180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0000747" + +#### Added +- [obsolete lymph organ](http://purl.obolibrary.org/obo/UBERON_0005180) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0000747](http://purl.obolibrary.org/obo/MA_0000747) + + +### obsolete lymphocyte `http://purl.obolibrary.org/obo/UBERON_3010308` +#### Removed +- [obsolete lymphocyte](http://purl.obolibrary.org/obo/UBERON_3010308) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000542" + +#### Added +- [obsolete lymphocyte](http://purl.obolibrary.org/obo/UBERON_3010308) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000542](http://purl.obolibrary.org/obo/CL_0000542) + + +### obsolete macula lagena `http://purl.obolibrary.org/obo/UBERON_0003927` +#### Removed +- [obsolete macula lagena](http://purl.obolibrary.org/obo/UBERON_0003927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000116" + +#### Added +- [obsolete macula lagena](http://purl.obolibrary.org/obo/UBERON_0003927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000116](http://purl.obolibrary.org/obo/ZFA_0000116) + + +### obsolete macula lutea `http://purl.obolibrary.org/obo/UBERON_0001784` +#### Removed +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000053" + +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000054" + +#### Added +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [macula](http://purl.obolibrary.org/obo/UBERON_0000054) + +- [obsolete macula lutea](http://purl.obolibrary.org/obo/UBERON_0001784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [macula lutea](http://purl.obolibrary.org/obo/UBERON_0000053) + + +### obsolete mammary gland sebaceous gland `http://purl.obolibrary.org/obo/UBERON_0003486` +#### Removed +- [obsolete mammary gland sebaceous gland](http://purl.obolibrary.org/obo/UBERON_0003486) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011827" + +#### Added +- [obsolete mammary gland sebaceous gland](http://purl.obolibrary.org/obo/UBERON_0003486) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [areolar gland](http://purl.obolibrary.org/obo/UBERON_0011827) + + +### obsolete manual claw `http://purl.obolibrary.org/obo/UBERON_4200179` +#### Removed +- [obsolete manual claw](http://purl.obolibrary.org/obo/UBERON_4200179) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009565" + +#### Added +- [obsolete manual claw](http://purl.obolibrary.org/obo/UBERON_4200179) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nail of manual digit](http://purl.obolibrary.org/obo/UBERON_0009565) + + +### obsolete marginal blastomere `http://purl.obolibrary.org/obo/UBERON_2000541` +#### Removed +- [obsolete marginal blastomere](http://purl.obolibrary.org/obo/UBERON_2000541) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "ZFA:0000541" + +#### Added +- [obsolete marginal blastomere](http://purl.obolibrary.org/obo/UBERON_2000541) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ZFA_0000541](http://purl.obolibrary.org/obo/ZFA_0000541) + + +### obsolete matrix part of body of caudate nucleus `http://purl.obolibrary.org/obo/UBERON_0027243` +#### Removed +- [obsolete matrix part of body of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027243) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1010003" + +#### Added +- [obsolete matrix part of body of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027243) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1010003](http://purl.obolibrary.org/obo/NLXANAT_1010003) + + +### obsolete maxillary saddle `http://purl.obolibrary.org/obo/UBERON_4300001` +#### Removed +- [obsolete maxillary saddle](http://purl.obolibrary.org/obo/UBERON_4300001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000652" + +#### Added +- [obsolete maxillary saddle](http://purl.obolibrary.org/obo/UBERON_4300001) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [fossa maxillaris](http://purl.obolibrary.org/obo/UBERON_3000652) + + +### obsolete median fin `http://purl.obolibrary.org/obo/UBERON_2002276` +#### Removed +- [obsolete median fin](http://purl.obolibrary.org/obo/UBERON_2002276) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "VSAO:0000162" + +#### Added +- [obsolete median fin](http://purl.obolibrary.org/obo/UBERON_2002276) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [VSAO_0000162](http://purl.obolibrary.org/obo/VSAO_0000162) + + +### obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_0002543` +#### Removed +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EFO:0000950" + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000277" + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MAT:0000277" + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0001123" + +#### Added +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MAT_0000277](http://purl.obolibrary.org/obo/MAT_0000277) + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EFO_0000950](http://purl.obolibrary.org/obo/EFO_0000950) + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000277](http://purl.obolibrary.org/obo/MIAA_0000277) + +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_0002543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0001123](http://purl.obolibrary.org/obo/ZFA_0001123) + + +### obsolete median fin skeleton `http://purl.obolibrary.org/obo/UBERON_2001123` +#### Removed +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001123) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000170" + +#### Added +- [obsolete median fin skeleton](http://purl.obolibrary.org/obo/UBERON_2001123) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [median fin skeleton](http://purl.obolibrary.org/obo/UBERON_4000170) + + +### obsolete melanocyte `http://purl.obolibrary.org/obo/UBERON_3010319` +#### Removed +- [obsolete melanocyte](http://purl.obolibrary.org/obo/UBERON_3010319) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000148" + +#### Added +- [obsolete melanocyte](http://purl.obolibrary.org/obo/UBERON_3010319) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000148](http://purl.obolibrary.org/obo/CL_0000148) + + +### obsolete mentum `http://purl.obolibrary.org/obo/UBERON_0003168` +#### Removed +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000534" + +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004544" + +#### Added +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004544](http://purl.obolibrary.org/obo/FBbt_00004544) + +- [obsolete mentum](http://purl.obolibrary.org/obo/UBERON_0003168) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000534](http://purl.obolibrary.org/obo/HAO_0000534) + + +### obsolete mesenchyme from somatopleure `http://purl.obolibrary.org/obo/UBERON_0008919` +#### Removed +- [obsolete mesenchyme from somatopleure](http://purl.obolibrary.org/obo/UBERON_0008919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010377" + +#### Added +- [obsolete mesenchyme from somatopleure](http://purl.obolibrary.org/obo/UBERON_0008919) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [mesenchyme from somatopleure](http://purl.obolibrary.org/obo/UBERON_0010377) + + +### obsolete mesenchyme from splanchnopleure `http://purl.obolibrary.org/obo/UBERON_0008920` +#### Removed +- [obsolete mesenchyme from splanchnopleure](http://purl.obolibrary.org/obo/UBERON_0008920) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010378" + +#### Added +- [obsolete mesenchyme from splanchnopleure](http://purl.obolibrary.org/obo/UBERON_0008920) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [mesenchyme from splanchnopleure](http://purl.obolibrary.org/obo/UBERON_0010378) + + +### obsolete mesodermal cell `http://purl.obolibrary.org/obo/UBERON_3010556` +#### Removed +- [obsolete mesodermal cell](http://purl.obolibrary.org/obo/UBERON_3010556) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000222" + +#### Added +- [obsolete mesodermal cell](http://purl.obolibrary.org/obo/UBERON_3010556) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000222](http://purl.obolibrary.org/obo/CL_0000222) + + +### obsolete mesofurca `http://purl.obolibrary.org/obo/UBERON_0003184` +#### Removed +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004619" + +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000547" + +#### Added +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004619](http://purl.obolibrary.org/obo/FBbt_00004619) + +- [obsolete mesofurca](http://purl.obolibrary.org/obo/UBERON_0003184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000547](http://purl.obolibrary.org/obo/HAO_0000547) + + +### obsolete mesorchium `http://purl.obolibrary.org/obo/UBERON_3010530` +#### Removed +- [obsolete mesorchium](http://purl.obolibrary.org/obo/UBERON_3010530) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011879" + +#### Added +- [obsolete mesorchium](http://purl.obolibrary.org/obo/UBERON_3010530) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [mesorchium](http://purl.obolibrary.org/obo/UBERON_0011879) + + +### obsolete metafurca `http://purl.obolibrary.org/obo/UBERON_0003185` +#### Removed +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000592" + +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004638" + +#### Added +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000592](http://purl.obolibrary.org/obo/HAO_0000592) + +- [obsolete metafurca](http://purl.obolibrary.org/obo/UBERON_0003185) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004638](http://purl.obolibrary.org/obo/FBbt_00004638) + + +### obsolete metaplastic ossification `http://purl.obolibrary.org/obo/UBERON_4000142` +#### Removed +- [obsolete metaplastic ossification](http://purl.obolibrary.org/obo/UBERON_4000142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036074" + +#### Added +- [obsolete metaplastic ossification](http://purl.obolibrary.org/obo/UBERON_4000142) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036074](http://purl.obolibrary.org/obo/GO_0036074) + + +### obsolete microfilament `http://purl.obolibrary.org/obo/UBERON_0003003` +#### Removed +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A11.284.195.190.750.510" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13255" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0025979" + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Actin_Filament" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:1080" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0005884" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao2006047981" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:63850" + +#### Added +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0025979](http://purl.obolibrary.org/obo/UMLS_C0025979) + - [source](http://www.geneontology.org/formats/oboInOwl#source) "ncithesaurus:Actin_Filament" + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao2006047981](http://purl.obolibrary.org/obo/NIF_Subcellular_sao2006047981) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A11.284.195.190.750.510](http://purl.obolibrary.org/obo/MESH_A11.284.195.190.750.510) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_1080](http://purl.obolibrary.org/obo/GAID_1080) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_63850](http://purl.obolibrary.org/obo/FMA_63850) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13255](http://purl.obolibrary.org/obo/NCIT_C13255) + +- [obsolete microfilament](http://purl.obolibrary.org/obo/UBERON_0003003) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0005884](http://purl.obolibrary.org/obo/GO_0005884) + + +### obsolete midbrain neural fold `http://purl.obolibrary.org/obo/UBERON_0005264` +#### Removed +- [obsolete midbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005264) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0000793" + +#### Added +- [obsolete midbrain neural fold](http://purl.obolibrary.org/obo/UBERON_0005264) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0000793](http://purl.obolibrary.org/obo/VHOG_0000793) + + +### obsolete midbrain vesicle `http://purl.obolibrary.org/obo/UBERON_0009131` +#### Removed +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:361481005" + +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001103" + +#### Added +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_361481005](http://purl.obolibrary.org/obo/SCTID_361481005) + +- [obsolete midbrain vesicle](http://purl.obolibrary.org/obo/UBERON_0009131) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001103](http://purl.obolibrary.org/obo/EHDAA2_0001103) + + +### obsolete middle cavity `http://purl.obolibrary.org/obo/UBERON_3010156` +#### Removed +- [obsolete middle cavity](http://purl.obolibrary.org/obo/UBERON_3010156) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000087" + +#### Added +- [obsolete middle cavity](http://purl.obolibrary.org/obo/UBERON_3010156) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cavum medius](http://purl.obolibrary.org/obo/UBERON_3000087) + + +### obsolete middle temporal area `http://purl.obolibrary.org/obo/UBERON_0004685` +#### Removed +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0013552" + +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090308" + +#### Added +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [Brodmann (1909) area 21](http://purl.obolibrary.org/obo/UBERON_0013552) + +- [obsolete middle temporal area](http://purl.obolibrary.org/obo/UBERON_0004685) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090308](http://purl.obolibrary.org/obo/NLXANAT_20090308) + + +### obsolete mitochondrial aggregate `http://purl.obolibrary.org/obo/UBERON_3010306` +#### Removed +- [obsolete mitochondrial aggregate](http://purl.obolibrary.org/obo/UBERON_3010306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0032019" + +#### Added +- [obsolete mitochondrial aggregate](http://purl.obolibrary.org/obo/UBERON_3010306) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0032019](http://purl.obolibrary.org/obo/GO_0032019) + + +### obsolete mode of ossification `http://purl.obolibrary.org/obo/UBERON_4000002` +#### Removed +- [obsolete mode of ossification](http://purl.obolibrary.org/obo/UBERON_4000002) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0001503" + +#### Added +- [obsolete mode of ossification](http://purl.obolibrary.org/obo/UBERON_4000002) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0001503](http://purl.obolibrary.org/obo/GO_0001503) + + +### obsolete motor nerve `http://purl.obolibrary.org/obo/UBERON_0001026` +#### Removed +- [obsolete motor nerve](http://purl.obolibrary.org/obo/UBERON_0001026) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006798" + +#### Added +- [obsolete motor nerve](http://purl.obolibrary.org/obo/UBERON_0001026) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [efferent nerve](http://purl.obolibrary.org/obo/UBERON_0006798) + + +### obsolete mouthpart `http://purl.obolibrary.org/obo/UBERON_0003163` +#### Removed +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004520" + +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000639" + +#### Added +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000639](http://purl.obolibrary.org/obo/HAO_0000639) + +- [obsolete mouthpart](http://purl.obolibrary.org/obo/UBERON_0003163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004520](http://purl.obolibrary.org/obo/FBbt_00004520) + + +### obsolete muscle of body wall `http://purl.obolibrary.org/obo/UBERON_0003896` +#### Removed +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ANISEED:1235296" + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005813" + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004462" + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0001863" + +#### Added +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005813](http://purl.obolibrary.org/obo/WBbt_0005813) + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ANISEED_1235296](http://purl.obolibrary.org/obo/ANISEED_1235296) + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [musculature of body wall](http://purl.obolibrary.org/obo/UBERON_0004462) + +- [obsolete muscle of body wall](http://purl.obolibrary.org/obo/UBERON_0003896) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0001863](http://purl.obolibrary.org/obo/BTO_0001863) + + +### obsolete musculature of thorax `http://purl.obolibrary.org/obo/UBERON_0004472` +#### Removed +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004464" + +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:74779" + +#### Added +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_74779](http://purl.obolibrary.org/obo/FMA_74779) + +- [obsolete musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004472) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [musculature of thorax](http://purl.obolibrary.org/obo/UBERON_0004464) + + +### obsolete musculus obliquus inferior `http://purl.obolibrary.org/obo/UBERON_3010117` +#### Removed +- [obsolete musculus obliquus inferior](http://purl.obolibrary.org/obo/UBERON_3010117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006320" + +#### Added +- [obsolete musculus obliquus inferior](http://purl.obolibrary.org/obo/UBERON_3010117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [inferior oblique extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006320) + + +### obsolete musculus rectus inferior `http://purl.obolibrary.org/obo/UBERON_3010101` +#### Removed +- [obsolete musculus rectus inferior](http://purl.obolibrary.org/obo/UBERON_3010101) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006322" + +#### Added +- [obsolete musculus rectus inferior](http://purl.obolibrary.org/obo/UBERON_3010101) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [inferior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006322) + + +### obsolete musculus rectus medialis `http://purl.obolibrary.org/obo/UBERON_3010113` +#### Removed +- [obsolete musculus rectus medialis](http://purl.obolibrary.org/obo/UBERON_3010113) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001602" + +#### Added +- [obsolete musculus rectus medialis](http://purl.obolibrary.org/obo/UBERON_3010113) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [medial rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0001602) + + +### obsolete musculus rectus superior `http://purl.obolibrary.org/obo/UBERON_3010099` +#### Removed +- [obsolete musculus rectus superior](http://purl.obolibrary.org/obo/UBERON_3010099) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006323" + +#### Added +- [obsolete musculus rectus superior](http://purl.obolibrary.org/obo/UBERON_3010099) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [superior rectus extraocular muscle](http://purl.obolibrary.org/obo/UBERON_0006323) + + +### obsolete myelin membrane `http://purl.obolibrary.org/obo/UBERON_0000346` +#### Removed +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:73417" + +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0000895" + +#### Added +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0000895](http://purl.obolibrary.org/obo/BTO_0000895) + +- [obsolete myelin membrane](http://purl.obolibrary.org/obo/UBERON_0000346) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_73417](http://purl.obolibrary.org/obo/FMA_73417) + + +### obsolete myoblast `http://purl.obolibrary.org/obo/UBERON_3010313` +#### Removed +- [obsolete myoblast](http://purl.obolibrary.org/obo/UBERON_3010313) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000056" + +#### Added +- [obsolete myoblast](http://purl.obolibrary.org/obo/UBERON_3010313) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000056](http://purl.obolibrary.org/obo/CL_0000056) + + +### obsolete natural killer cell `http://purl.obolibrary.org/obo/UBERON_3010310` +#### Removed +- [obsolete natural killer cell](http://purl.obolibrary.org/obo/UBERON_3010310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000623" + +#### Added +- [obsolete natural killer cell](http://purl.obolibrary.org/obo/UBERON_3010310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000623](http://purl.obolibrary.org/obo/CL_0000623) + + +### obsolete neck of humerus `http://purl.obolibrary.org/obo/UBERON_0018669` +#### Removed +- [obsolete neck of humerus](http://purl.obolibrary.org/obo/UBERON_0018669) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4200172" + +#### Added +- [obsolete neck of humerus](http://purl.obolibrary.org/obo/UBERON_0018669) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neck of humerus](http://purl.obolibrary.org/obo/UBERON_4200172) + + +### obsolete nematocyst `http://purl.obolibrary.org/obo/UBERON_0008278` +#### Removed +- [obsolete nematocyst](http://purl.obolibrary.org/obo/UBERON_0008278) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0000918" + +#### Added +- [obsolete nematocyst](http://purl.obolibrary.org/obo/UBERON_0008278) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0000918](http://purl.obolibrary.org/obo/BTO_0000918) + + +### obsolete neostriatum `http://purl.obolibrary.org/obo/UBERON_0002777` +#### Removed +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1672" + +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77617" + +#### Added +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1672](http://purl.obolibrary.org/obo/BIRNLEX_1672) + +- [obsolete neostriatum](http://purl.obolibrary.org/obo/UBERON_0002777) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77617](http://purl.obolibrary.org/obo/FMA_77617) + + +### obsolete nerve of central nervous system `http://purl.obolibrary.org/obo/UBERON_0003266` +#### Removed +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:17263" + +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:2851" + +#### Added +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_17263](http://purl.obolibrary.org/obo/EMAPA_17263) + +- [obsolete nerve of central nervous system](http://purl.obolibrary.org/obo/UBERON_0003266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_2851](http://purl.obolibrary.org/obo/EHDAA_2851) + + +### obsolete neurite `http://purl.obolibrary.org/obo/UBERON_0001024` +#### Removed +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:751" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao-867568886" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0043005" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A08.663.256.500" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005113" + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61814" + +#### Added +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61814](http://purl.obolibrary.org/obo/FMA_61814) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0043005](http://purl.obolibrary.org/obo/GO_0043005) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005113](http://purl.obolibrary.org/obo/FBbt_00005113) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_751](http://purl.obolibrary.org/obo/GAID_751) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A08.663.256.500](http://purl.obolibrary.org/obo/MESH_A08.663.256.500) + +- [obsolete neurite](http://purl.obolibrary.org/obo/UBERON_0001024) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao-867568886](http://purl.obolibrary.org/obo/NIF_Subcellular_sao-867568886) + + +### obsolete neurofilament `http://purl.obolibrary.org/obo/UBERON_0002986` +#### Removed +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005883" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1316272517" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0027834" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:63859" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13263" + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:846" + +#### Added +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_846](http://purl.obolibrary.org/obo/BIRNLEX_846) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0027834](http://purl.obolibrary.org/obo/UMLS_C0027834) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005883](http://purl.obolibrary.org/obo/GO_0005883) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13263](http://purl.obolibrary.org/obo/NCIT_C13263) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1316272517](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1316272517) + +- [obsolete neurofilament](http://purl.obolibrary.org/obo/UBERON_0002986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_63859](http://purl.obolibrary.org/obo/FMA_63859) + + +### obsolete neuromuscular junction `http://purl.obolibrary.org/obo/UBERON_0001029` +#### Removed +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005142" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0031594" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:D009469" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61803" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1124888485" + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:809" + +#### Added +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_D009469](http://purl.obolibrary.org/obo/MESH_D009469) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0031594](http://purl.obolibrary.org/obo/GO_0031594) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005142](http://purl.obolibrary.org/obo/FBbt_00005142) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61803](http://purl.obolibrary.org/obo/FMA_61803) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1124888485](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1124888485) + +- [obsolete neuromuscular junction](http://purl.obolibrary.org/obo/UBERON_0001029) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_809](http://purl.obolibrary.org/obo/GAID_809) + + +### obsolete neuron `http://purl.obolibrary.org/obo/UBERON_3010315` +#### Removed +- [obsolete neuron](http://purl.obolibrary.org/obo/UBERON_3010315) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000540" + +#### Added +- [obsolete neuron](http://purl.obolibrary.org/obo/UBERON_3010315) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000540](http://purl.obolibrary.org/obo/CL_0000540) + + +### obsolete node of ranvier `http://purl.obolibrary.org/obo/UBERON_0002611` +#### Removed +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0033268" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1152" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67368" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C33172" + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:748" + +#### Added +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0033268](http://purl.obolibrary.org/obo/GO_0033268) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C33172](http://purl.obolibrary.org/obo/NCIT_C33172) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1152](http://purl.obolibrary.org/obo/BIRNLEX_1152) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_748](http://purl.obolibrary.org/obo/GAID_748) + +- [obsolete node of ranvier](http://purl.obolibrary.org/obo/UBERON_0002611) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67368](http://purl.obolibrary.org/obo/FMA_67368) + + +### obsolete nodulus of cerebellum `http://purl.obolibrary.org/obo/UBERON_0002311` +#### Removed +- [obsolete nodulus of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004083" + +#### Added +- [obsolete nodulus of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002311) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cerebellum vermis lobule X](http://purl.obolibrary.org/obo/UBERON_0004083) + + +### obsolete non-terminally differentiated odontoblast `http://purl.obolibrary.org/obo/UBERON_4000095` +#### Removed +- [obsolete non-terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000095) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:00007012" + +#### Added +- [obsolete non-terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000095) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_00007012](http://purl.obolibrary.org/obo/CL_00007012) + + +### obsolete non-terminally differentiated osteoblast `http://purl.obolibrary.org/obo/UBERON_4000117` +#### Removed +- [obsolete non-terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0001040" + +#### Added +- [obsolete non-terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000117) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0001040](http://purl.obolibrary.org/obo/CL_0001040) + + +### obsolete notochordal cell `http://purl.obolibrary.org/obo/UBERON_4000009` +#### Removed +- [obsolete notochordal cell](http://purl.obolibrary.org/obo/UBERON_4000009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007005" + +#### Added +- [obsolete notochordal cell](http://purl.obolibrary.org/obo/UBERON_4000009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007005](http://purl.obolibrary.org/obo/CL_0007005) + + +### obsolete notochordal mesodermal cell `http://purl.obolibrary.org/obo/UBERON_4000010` +#### Removed +- [obsolete notochordal mesodermal cell](http://purl.obolibrary.org/obo/UBERON_4000010) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007006" + +#### Added +- [obsolete notochordal mesodermal cell](http://purl.obolibrary.org/obo/UBERON_4000010) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007006](http://purl.obolibrary.org/obo/CL_0007006) + + +### obsolete notopleural suture `http://purl.obolibrary.org/obo/UBERON_0003183` +#### Removed +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000649" + +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004604" + +#### Added +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004604](http://purl.obolibrary.org/obo/FBbt_00004604) + +- [obsolete notopleural suture](http://purl.obolibrary.org/obo/UBERON_0003183) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000649](http://purl.obolibrary.org/obo/HAO_0000649) + + +### obsolete nuchal plate of carapace `http://purl.obolibrary.org/obo/UBERON_0011668` +#### Removed +- [obsolete nuchal plate of carapace](http://purl.obolibrary.org/obo/UBERON_0011668) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011671" + +#### Added +- [obsolete nuchal plate of carapace](http://purl.obolibrary.org/obo/UBERON_0011668) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nuchal plate of carapace](http://purl.obolibrary.org/obo/UBERON_0011671) + + +### obsolete nucleus motorius of nervi vagi `http://purl.obolibrary.org/obo/UBERON_2000387` +#### Removed +- [obsolete nucleus motorius of nervi vagi](http://purl.obolibrary.org/obo/UBERON_2000387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011778" + +#### Added +- [obsolete nucleus motorius of nervi vagi](http://purl.obolibrary.org/obo/UBERON_2000387) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [motor nucleus of vagal nerve](http://purl.obolibrary.org/obo/UBERON_0011778) + + +### obsolete olfactory bulb main of rodent `http://purl.obolibrary.org/obo/UBERON_0023942` +#### Removed +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005019" + +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009951" + +#### Added +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005019](http://purl.obolibrary.org/obo/NLXANAT_1005019) + +- [obsolete olfactory bulb main of rodent](http://purl.obolibrary.org/obo/UBERON_0023942) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [main olfactory bulb](http://purl.obolibrary.org/obo/UBERON_0009951) + + +### obsolete olfactory receptor cell `http://purl.obolibrary.org/obo/UBERON_3010159` +#### Removed +- [obsolete olfactory receptor cell](http://purl.obolibrary.org/obo/UBERON_3010159) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000207" + +#### Added +- [obsolete olfactory receptor cell](http://purl.obolibrary.org/obo/UBERON_3010159) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000207](http://purl.obolibrary.org/obo/CL_0000207) + + +### obsolete olfactory support cell `http://purl.obolibrary.org/obo/UBERON_2000688` +#### Removed +- [obsolete olfactory support cell](http://purl.obolibrary.org/obo/UBERON_2000688) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000853" + +#### Added +- [obsolete olfactory support cell](http://purl.obolibrary.org/obo/UBERON_2000688) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000853](http://purl.obolibrary.org/obo/CL_0000853) + + +### obsolete oocyte `http://purl.obolibrary.org/obo/UBERON_3010296` +#### Removed +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_3010296) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000023" + +#### Added +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_3010296) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte `http://purl.obolibrary.org/obo/UBERON_2001109` +#### Removed +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_2001109) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte](http://purl.obolibrary.org/obo/UBERON_2001109) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage I `http://purl.obolibrary.org/obo/UBERON_2001567` +#### Removed +- [obsolete oocyte stage I](http://purl.obolibrary.org/obo/UBERON_2001567) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage I](http://purl.obolibrary.org/obo/UBERON_2001567) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage II `http://purl.obolibrary.org/obo/UBERON_2001565` +#### Removed +- [obsolete oocyte stage II](http://purl.obolibrary.org/obo/UBERON_2001565) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage II](http://purl.obolibrary.org/obo/UBERON_2001565) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage III `http://purl.obolibrary.org/obo/UBERON_2001566` +#### Removed +- [obsolete oocyte stage III](http://purl.obolibrary.org/obo/UBERON_2001566) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage III](http://purl.obolibrary.org/obo/UBERON_2001566) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage IV `http://purl.obolibrary.org/obo/UBERON_2001568` +#### Removed +- [obsolete oocyte stage IV](http://purl.obolibrary.org/obo/UBERON_2001568) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage IV](http://purl.obolibrary.org/obo/UBERON_2001568) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete oocyte stage V `http://purl.obolibrary.org/obo/UBERON_2001569` +#### Removed +- [obsolete oocyte stage V](http://purl.obolibrary.org/obo/UBERON_2001569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000023" + +#### Added +- [obsolete oocyte stage V](http://purl.obolibrary.org/obo/UBERON_2001569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000023](http://purl.obolibrary.org/obo/CL_0000023) + + +### obsolete opercle bone `http://purl.obolibrary.org/obo/UBERON_4000004` +#### Removed +- [obsolete opercle bone](http://purl.obolibrary.org/obo/UBERON_4000004) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2000250" + +#### Added +- [obsolete opercle bone](http://purl.obolibrary.org/obo/UBERON_4000004) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [opercle](http://purl.obolibrary.org/obo/UBERON_2000250) + + +### obsolete optic eminence surface ectoderm `http://purl.obolibrary.org/obo/UBERON_0005216` +#### Removed +- [obsolete optic eminence surface ectoderm](http://purl.obolibrary.org/obo/UBERON_0005216) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005234" + +#### Added +- [obsolete optic eminence surface ectoderm](http://purl.obolibrary.org/obo/UBERON_0005216) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [optic eminence ectoderm](http://purl.obolibrary.org/obo/UBERON_0005234) + + +### obsolete optic nerve head `http://purl.obolibrary.org/obo/UBERON_2002213` +#### Removed +- [obsolete optic nerve head](http://purl.obolibrary.org/obo/UBERON_2002213) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001783" + +#### Added +- [obsolete optic nerve head](http://purl.obolibrary.org/obo/UBERON_2002213) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [optic disc](http://purl.obolibrary.org/obo/UBERON_0001783) + + +### obsolete orbit `http://purl.obolibrary.org/obo/UBERON_2001967` +#### Removed +- [obsolete orbit](http://purl.obolibrary.org/obo/UBERON_2001967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0005558" + +#### Added +- [obsolete orbit](http://purl.obolibrary.org/obo/UBERON_2001967) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0005558](http://purl.obolibrary.org/obo/ZFA_0005558) + + +### obsolete orbital region `http://purl.obolibrary.org/obo/UBERON_3010220` +#### Removed +- [obsolete orbital region](http://purl.obolibrary.org/obo/UBERON_3010220) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001697" + +#### Added +- [obsolete orbital region](http://purl.obolibrary.org/obo/UBERON_3010220) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [orbit of skull](http://purl.obolibrary.org/obo/UBERON_0001697) + + +### obsolete os articulare `http://purl.obolibrary.org/obo/UBERON_3000347` +#### Removed +- [obsolete os articulare](http://purl.obolibrary.org/obo/UBERON_3000347) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2001805" + +#### Added +- [obsolete os articulare](http://purl.obolibrary.org/obo/UBERON_3000347) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [articular bone](http://purl.obolibrary.org/obo/UBERON_2001805) + + +### obsolete otic capsule endochondral element `http://purl.obolibrary.org/obo/UBERON_0015020` +#### Removed +- [obsolete otic capsule endochondral element](http://purl.obolibrary.org/obo/UBERON_0015020) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004637" + +#### Added +- [obsolete otic capsule endochondral element](http://purl.obolibrary.org/obo/UBERON_0015020) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [otic capsule](http://purl.obolibrary.org/obo/UBERON_0004637) + + +### obsolete otic operculum `http://purl.obolibrary.org/obo/UBERON_3010145` +#### Removed +- [obsolete otic operculum](http://purl.obolibrary.org/obo/UBERON_3010145) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3010728" + +#### Added +- [obsolete otic operculum](http://purl.obolibrary.org/obo/UBERON_3010145) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [otic opercular element](http://purl.obolibrary.org/obo/UBERON_3010728) + + +### obsolete otocyst epithelium `http://purl.obolibrary.org/obo/UBERON_0005641` +#### Removed +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:16996" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001344" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0000986" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:16671" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:16999" + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0003051" + +#### Added +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001344](http://purl.obolibrary.org/obo/EHDAA2_0001344) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_16671](http://purl.obolibrary.org/obo/EMAPA_16671) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_16999](http://purl.obolibrary.org/obo/EMAPA_16999) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0000986](http://purl.obolibrary.org/obo/VHOG_0000986) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ear vesicle](http://purl.obolibrary.org/obo/UBERON_0003051) + +- [obsolete otocyst epithelium](http://purl.obolibrary.org/obo/UBERON_0005641) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_16996](http://purl.obolibrary.org/obo/EMAPA_16996) + + +### obsolete paired fin radial `http://purl.obolibrary.org/obo/UBERON_4400009` +#### Removed +- [obsolete paired fin radial](http://purl.obolibrary.org/obo/UBERON_4400009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:1500006" + +#### Added +- [obsolete paired fin radial](http://purl.obolibrary.org/obo/UBERON_4400009) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [paired fin radial bone](http://purl.obolibrary.org/obo/UBERON_1500006) + + +### obsolete palatine `http://purl.obolibrary.org/obo/UBERON_2002158` +#### Removed +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_2002158) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001682" + +#### Added +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_2002158) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine bone](http://purl.obolibrary.org/obo/UBERON_0001682) + + +### obsolete palatine `http://purl.obolibrary.org/obo/UBERON_3000372` +#### Removed +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_3000372) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001682" + +#### Added +- [obsolete palatine](http://purl.obolibrary.org/obo/UBERON_3000372) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine bone](http://purl.obolibrary.org/obo/UBERON_0001682) + + +### obsolete palatine tooth `http://purl.obolibrary.org/obo/UBERON_3000376` +#### Removed +- [obsolete palatine tooth](http://purl.obolibrary.org/obo/UBERON_3000376) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012073" + +#### Added +- [obsolete palatine tooth](http://purl.obolibrary.org/obo/UBERON_3000376) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tooth of palatine bone](http://purl.obolibrary.org/obo/UBERON_0012073) + + +### obsolete paraxial mesenchyme `http://purl.obolibrary.org/obo/UBERON_2000942` +#### Removed +- [obsolete paraxial mesenchyme](http://purl.obolibrary.org/obo/UBERON_2000942) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003077" + +#### Added +- [obsolete paraxial mesenchyme](http://purl.obolibrary.org/obo/UBERON_2000942) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [paraxial mesoderm](http://purl.obolibrary.org/obo/UBERON_0003077) + + +### obsolete pars anterior `http://purl.obolibrary.org/obo/UBERON_0002431` +#### Removed +- [obsolete pars anterior](http://purl.obolibrary.org/obo/UBERON_0002431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006964" + +#### Added +- [obsolete pars anterior](http://purl.obolibrary.org/obo/UBERON_0002431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [pars distalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0006964) + + +### obsolete pars dentalis of maxilla `http://purl.obolibrary.org/obo/UBERON_3000396` +#### Removed +- [obsolete pars dentalis of maxilla](http://purl.obolibrary.org/obo/UBERON_3000396) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004527" + +#### Added +- [obsolete pars dentalis of maxilla](http://purl.obolibrary.org/obo/UBERON_3000396) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [alveolar process of maxilla](http://purl.obolibrary.org/obo/UBERON_0004527) + + +### obsolete pars dentalis of premaxilla `http://purl.obolibrary.org/obo/UBERON_3000397` +#### Removed +- [obsolete pars dentalis of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000397) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0034898" + +#### Added +- [obsolete pars dentalis of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000397) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [alveolar ridge of premaxilla](http://purl.obolibrary.org/obo/UBERON_0034898) + + +### obsolete pars nervosa `http://purl.obolibrary.org/obo/UBERON_3010538` +#### Removed +- [obsolete pars nervosa](http://purl.obolibrary.org/obo/UBERON_3010538) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003217" + +#### Added +- [obsolete pars nervosa](http://purl.obolibrary.org/obo/UBERON_3010538) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [neural lobe of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0003217) + + +### obsolete pars palatina of maxilla `http://purl.obolibrary.org/obo/UBERON_3000413` +#### Removed +- [obsolete pars palatina of maxilla](http://purl.obolibrary.org/obo/UBERON_3000413) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005871" + +#### Added +- [obsolete pars palatina of maxilla](http://purl.obolibrary.org/obo/UBERON_3000413) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine process of maxilla](http://purl.obolibrary.org/obo/UBERON_0005871) + + +### obsolete pars palatina of premaxilla `http://purl.obolibrary.org/obo/UBERON_3000414` +#### Removed +- [obsolete pars palatina of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000414) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0034900" + +#### Added +- [obsolete pars palatina of premaxilla](http://purl.obolibrary.org/obo/UBERON_3000414) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [palatine process of premaxilla](http://purl.obolibrary.org/obo/UBERON_0034900) + + +### obsolete part of neuraxis `http://purl.obolibrary.org/obo/UBERON_0025619` +#### Removed +- [obsolete part of neuraxis](http://purl.obolibrary.org/obo/UBERON_0025619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1010010" + +#### Added +- [obsolete part of neuraxis](http://purl.obolibrary.org/obo/UBERON_0025619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1010010](http://purl.obolibrary.org/obo/NLXANAT_1010010) + + +### obsolete pectoral fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001551` +#### Removed +- [obsolete pectoral fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001551) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000175" + +#### Added +- [obsolete pectoral fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001551) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pectoral fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000175) + + +### obsolete pedal claws `http://purl.obolibrary.org/obo/UBERON_4100008` +#### Removed +- [obsolete pedal claws](http://purl.obolibrary.org/obo/UBERON_4100008) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0009567" + +#### Added +- [obsolete pedal claws](http://purl.obolibrary.org/obo/UBERON_4100008) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nail of pedal digit](http://purl.obolibrary.org/obo/UBERON_0009567) + + +### obsolete pedicel `http://purl.obolibrary.org/obo/UBERON_0003200` +#### Removed +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000706" + +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004920" + +#### Added +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004920](http://purl.obolibrary.org/obo/FBbt_00004920) + +- [obsolete pedicel](http://purl.obolibrary.org/obo/UBERON_0003200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000706](http://purl.obolibrary.org/obo/HAO_0000706) + + +### obsolete pelvic fin lepidotrichium `http://purl.obolibrary.org/obo/UBERON_2001552` +#### Removed +- [obsolete pelvic fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4000173" + +#### Added +- [obsolete pelvic fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_2001552) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pelvic fin lepidotrichium](http://purl.obolibrary.org/obo/UBERON_4000173) + + +### obsolete perichondral ossification `http://purl.obolibrary.org/obo/UBERON_4000144` +#### Removed +- [obsolete perichondral ossification](http://purl.obolibrary.org/obo/UBERON_4000144) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036073" + +#### Added +- [obsolete perichondral ossification](http://purl.obolibrary.org/obo/UBERON_4000144) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036073](http://purl.obolibrary.org/obo/GO_0036073) + + +### obsolete peripheral nerve `http://purl.obolibrary.org/obo/UBERON_0002003` +#### Removed +- [obsolete peripheral nerve](http://purl.obolibrary.org/obo/UBERON_0002003) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001021" + +#### Added +- [obsolete peripheral nerve](http://purl.obolibrary.org/obo/UBERON_0002003) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [nerve](http://purl.obolibrary.org/obo/UBERON_0001021) + + +### obsolete peripheral part of autonomous nervous system `http://purl.obolibrary.org/obo/UBERON_0005433` +#### Removed +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:429921001" + +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:65553" + +#### Added +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_65553](http://purl.obolibrary.org/obo/FMA_65553) + +- [obsolete peripheral part of autonomous nervous system](http://purl.obolibrary.org/obo/UBERON_0005433) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_429921001](http://purl.obolibrary.org/obo/SCTID_429921001) + + +### obsolete peritreme `http://purl.obolibrary.org/obo/UBERON_0003147` +#### Removed +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00003121" + +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000712" + +#### Added +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00003121](http://purl.obolibrary.org/obo/FBbt_00003121) + +- [obsolete peritreme](http://purl.obolibrary.org/obo/UBERON_0003147) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000712](http://purl.obolibrary.org/obo/HAO_0000712) + + +### obsolete pharyngeal nerve `http://purl.obolibrary.org/obo/UBERON_0000960` +#### Removed +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004021" + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005441" + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77524" + +#### Added +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004021](http://purl.obolibrary.org/obo/FBbt_00004021) + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005441](http://purl.obolibrary.org/obo/WBbt_0005441) + +- [obsolete pharyngeal nerve](http://purl.obolibrary.org/obo/UBERON_0000960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77524](http://purl.obolibrary.org/obo/FMA_77524) + + +### obsolete photoreceptor `http://purl.obolibrary.org/obo/UBERON_0001034` +#### Removed +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:85613" + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0000210" + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:778" + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005162" + +#### Added +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005162](http://purl.obolibrary.org/obo/FBbt_00005162) + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_778](http://purl.obolibrary.org/obo/GAID_778) + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0000210](http://purl.obolibrary.org/obo/CL_0000210) + +- [obsolete photoreceptor](http://purl.obolibrary.org/obo/UBERON_0001034) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_85613](http://purl.obolibrary.org/obo/FMA_85613) + + +### obsolete phragma `http://purl.obolibrary.org/obo/UBERON_0003152` +#### Removed +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004480" + +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000716" + +#### Added +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004480](http://purl.obolibrary.org/obo/FBbt_00004480) + +- [obsolete phragma](http://purl.obolibrary.org/obo/UBERON_0003152) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000716](http://purl.obolibrary.org/obo/HAO_0000716) + + +### obsolete pigment cell `http://purl.obolibrary.org/obo/UBERON_3010317` +#### Removed +- [obsolete pigment cell](http://purl.obolibrary.org/obo/UBERON_3010317) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000147" + +#### Added +- [obsolete pigment cell](http://purl.obolibrary.org/obo/UBERON_3010317) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000147](http://purl.obolibrary.org/obo/CL_0000147) + + +### obsolete pigment layer `http://purl.obolibrary.org/obo/UBERON_3010350` +#### Removed +- [obsolete pigment layer](http://purl.obolibrary.org/obo/UBERON_3010350) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0007625" + +#### Added +- [obsolete pigment layer](http://purl.obolibrary.org/obo/UBERON_3010350) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pigment epithelium of eye](http://purl.obolibrary.org/obo/UBERON_0007625) + + +### obsolete pleural suture `http://purl.obolibrary.org/obo/UBERON_0003182` +#### Removed +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000725" + +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004603" + +#### Added +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000725](http://purl.obolibrary.org/obo/HAO_0000725) + +- [obsolete pleural suture](http://purl.obolibrary.org/obo/UBERON_0003182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004603](http://purl.obolibrary.org/obo/FBbt_00004603) + + +### obsolete pleural wing process `http://purl.obolibrary.org/obo/UBERON_0003179` +#### Removed +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000726" + +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004595" + +#### Added +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004595](http://purl.obolibrary.org/obo/FBbt_00004595) + +- [obsolete pleural wing process](http://purl.obolibrary.org/obo/UBERON_0003179) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000726](http://purl.obolibrary.org/obo/HAO_0000726) + + +### obsolete podocyte `http://purl.obolibrary.org/obo/UBERON_3010321` +#### Removed +- [obsolete podocyte](http://purl.obolibrary.org/obo/UBERON_3010321) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000653" + +#### Added +- [obsolete podocyte](http://purl.obolibrary.org/obo/UBERON_3010321) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000653](http://purl.obolibrary.org/obo/CL_0000653) + + +### obsolete podocyte foot process `http://purl.obolibrary.org/obo/UBERON_0004355` +#### Removed +- [obsolete podocyte foot process](http://purl.obolibrary.org/obo/UBERON_0004355) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0098846" + +#### Added +- [obsolete podocyte foot process](http://purl.obolibrary.org/obo/UBERON_0004355) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0098846](http://purl.obolibrary.org/obo/GO_0098846) + + +### obsolete polar body `http://purl.obolibrary.org/obo/UBERON_3010307` +#### Removed +- [obsolete polar body](http://purl.obolibrary.org/obo/UBERON_3010307) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0002090" + +#### Added +- [obsolete polar body](http://purl.obolibrary.org/obo/UBERON_3010307) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0002090](http://purl.obolibrary.org/obo/CL_0002090) + + +### obsolete polychromatophilic erythroblast `http://purl.obolibrary.org/obo/UBERON_2005241` +#### Removed +- [obsolete polychromatophilic erythroblast](http://purl.obolibrary.org/obo/UBERON_2005241) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000550" + +#### Added +- [obsolete polychromatophilic erythroblast](http://purl.obolibrary.org/obo/UBERON_2005241) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000550](http://purl.obolibrary.org/obo/CL_0000550) + + +### obsolete posterior cardinal vein `http://purl.obolibrary.org/obo/UBERON_3011081` +#### Removed +- [obsolete posterior cardinal vein](http://purl.obolibrary.org/obo/UBERON_3011081) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002065" + +#### Added +- [obsolete posterior cardinal vein](http://purl.obolibrary.org/obo/UBERON_3011081) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [posterior cardinal vein](http://purl.obolibrary.org/obo/UBERON_0002065) + + +### obsolete posterior notal wing process `http://purl.obolibrary.org/obo/UBERON_0003177` +#### Removed +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000758" + +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004586" + +#### Added +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000758](http://purl.obolibrary.org/obo/HAO_0000758) + +- [obsolete posterior notal wing process](http://purl.obolibrary.org/obo/UBERON_0003177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004586](http://purl.obolibrary.org/obo/FBbt_00004586) + + +### obsolete posterior of pes `http://purl.obolibrary.org/obo/UBERON_7500039` +#### Removed +- [obsolete posterior of pes](http://purl.obolibrary.org/obo/UBERON_7500039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0008338" + +#### Added +- [obsolete posterior of pes](http://purl.obolibrary.org/obo/UBERON_7500039) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [plantar part of pes](http://purl.obolibrary.org/obo/UBERON_0008338) + + +### obsolete posterior tentorial pit `http://purl.obolibrary.org/obo/UBERON_0003160` +#### Removed +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000768" + +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004503" + +#### Added +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000768](http://purl.obolibrary.org/obo/HAO_0000768) + +- [obsolete posterior tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003160) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004503](http://purl.obolibrary.org/obo/FBbt_00004503) + + +### obsolete postganglionic parasympathetic nervous system `http://purl.obolibrary.org/obo/UBERON_0005074` +#### Removed +- [obsolete postganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005074) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011929" + +#### Added +- [obsolete postganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005074) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [postganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011929) + + +### obsolete postgena `http://purl.obolibrary.org/obo/UBERON_0003157` +#### Removed +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000776" + +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004496" + +#### Added +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000776](http://purl.obolibrary.org/obo/HAO_0000776) + +- [obsolete postgena](http://purl.obolibrary.org/obo/UBERON_0003157) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004496](http://purl.obolibrary.org/obo/FBbt_00004496) + + +### obsolete postnotum `http://purl.obolibrary.org/obo/UBERON_0003178` +#### Removed +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000786" + +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004588" + +#### Added +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004588](http://purl.obolibrary.org/obo/FBbt_00004588) + +- [obsolete postnotum](http://purl.obolibrary.org/obo/UBERON_0003178) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000786](http://purl.obolibrary.org/obo/HAO_0000786) + + +### obsolete postocciput `http://purl.obolibrary.org/obo/UBERON_0003156` +#### Removed +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000790" + +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004494" + +#### Added +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000790](http://purl.obolibrary.org/obo/HAO_0000790) + +- [obsolete postocciput](http://purl.obolibrary.org/obo/UBERON_0003156) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004494](http://purl.obolibrary.org/obo/FBbt_00004494) + + +### obsolete postzygapophysis `http://purl.obolibrary.org/obo/UBERON_4300122` +#### Removed +- [obsolete postzygapophysis](http://purl.obolibrary.org/obo/UBERON_4300122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001080" + +#### Added +- [obsolete postzygapophysis](http://purl.obolibrary.org/obo/UBERON_4300122) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [postzygapophysis](http://purl.obolibrary.org/obo/UBERON_0001080) + + +### obsolete pre-hepatic part `http://purl.obolibrary.org/obo/UBERON_0006281` +#### Removed +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA:8701" + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "RETIRED_EHDAA2:0001492" + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:18422" + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71904" + +#### Added +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71904](http://purl.obolibrary.org/obo/FMA_71904) + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [RETIRED_EHDAA2_0001492](http://purl.obolibrary.org/obo/RETIRED_EHDAA2_0001492) + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA_8701](http://purl.obolibrary.org/obo/EHDAA_8701) + +- [obsolete pre-hepatic part](http://purl.obolibrary.org/obo/UBERON_0006281) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_18422](http://purl.obolibrary.org/obo/EMAPA_18422) + + +### obsolete preameloblast `http://purl.obolibrary.org/obo/UBERON_4000038` +#### Removed +- [obsolete preameloblast](http://purl.obolibrary.org/obo/UBERON_4000038) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007000" + +#### Added +- [obsolete preameloblast](http://purl.obolibrary.org/obo/UBERON_4000038) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007000](http://purl.obolibrary.org/obo/CL_0007000) + + +### obsolete precementoblast `http://purl.obolibrary.org/obo/UBERON_4000043` +#### Removed +- [obsolete precementoblast](http://purl.obolibrary.org/obo/UBERON_4000043) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007002" + +#### Added +- [obsolete precementoblast](http://purl.obolibrary.org/obo/UBERON_4000043) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007002](http://purl.obolibrary.org/obo/CL_0007002) + + +### obsolete prechondroblast `http://purl.obolibrary.org/obo/UBERON_4000044` +#### Removed +- [obsolete prechondroblast](http://purl.obolibrary.org/obo/UBERON_4000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007009" + +#### Added +- [obsolete prechondroblast](http://purl.obolibrary.org/obo/UBERON_4000044) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007009](http://purl.obolibrary.org/obo/CL_0007009) + + +### obsolete predominantly Gray regional part of inferior parietal cortex `http://purl.obolibrary.org/obo/UBERON_0026117` +#### Removed +- [obsolete predominantly Gray regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0026117) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1371" + +#### Added +- [obsolete predominantly Gray regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0026117) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1371](http://purl.obolibrary.org/obo/BIRNLEX_1371) + + +### obsolete predominantly gray anterior regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026270` +#### Removed +- [obsolete predominantly gray anterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026270) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1524" + +#### Added +- [obsolete predominantly gray anterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026270) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1524](http://purl.obolibrary.org/obo/BIRNLEX_1524) + + +### obsolete predominantly gray dorsal regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026040` +#### Removed +- [obsolete predominantly gray dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1293" + +#### Added +- [obsolete predominantly gray dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1293](http://purl.obolibrary.org/obo/BIRNLEX_1293) + + +### obsolete predominantly gray intralaminal regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0027078` +#### Removed +- [obsolete predominantly gray intralaminal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:962" + +#### Added +- [obsolete predominantly gray intralaminal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_962](http://purl.obolibrary.org/obo/BIRNLEX_962) + + +### obsolete predominantly gray lateral regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0027103` +#### Removed +- [obsolete predominantly gray lateral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027103) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:988" + +#### Added +- [obsolete predominantly gray lateral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0027103) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_988](http://purl.obolibrary.org/obo/BIRNLEX_988) + + +### obsolete predominantly gray medial regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0025993` +#### Removed +- [obsolete predominantly gray medial regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0025993) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1246" + +#### Added +- [obsolete predominantly gray medial regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0025993) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1246](http://purl.obolibrary.org/obo/BIRNLEX_1246) + + +### obsolete predominantly gray midline regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026982` +#### Removed +- [obsolete predominantly gray midline regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026982) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:849" + +#### Added +- [obsolete predominantly gray midline regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026982) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_849](http://purl.obolibrary.org/obo/BIRNLEX_849) + + +### obsolete predominantly gray part of Intralaminar nuclear group `http://purl.obolibrary.org/obo/UBERON_0028615` +#### Removed +- [obsolete predominantly gray part of Intralaminar nuclear group](http://purl.obolibrary.org/obo/UBERON_0028615) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:852" + +#### Added +- [obsolete predominantly gray part of Intralaminar nuclear group](http://purl.obolibrary.org/obo/UBERON_0028615) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_852](http://purl.obolibrary.org/obo/BIRNLEX_852) + + +### obsolete predominantly gray part of basal amygdaloid nucleus `http://purl.obolibrary.org/obo/UBERON_0029960` +#### Removed +- [obsolete predominantly gray part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2694" + +#### Added +- [obsolete predominantly gray part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029960) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2694](http://purl.obolibrary.org/obo/BIRNLEX_2694) + + +### obsolete predominantly gray part of basolateral nuclear complex `http://purl.obolibrary.org/obo/UBERON_0028317` +#### Removed +- [obsolete predominantly gray part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2684" + +#### Added +- [obsolete predominantly gray part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2684](http://purl.obolibrary.org/obo/BIRNLEX_2684) + + +### obsolete predominantly gray part of corticomedial nuclear complex `http://purl.obolibrary.org/obo/UBERON_0026700` +#### Removed +- [obsolete predominantly gray part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026700) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2699" + +#### Added +- [obsolete predominantly gray part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026700) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2699](http://purl.obolibrary.org/obo/BIRNLEX_2699) + + +### obsolete predominantly gray part of medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0023362` +#### Removed +- [obsolete predominantly gray part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0023362) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2633" + +#### Added +- [obsolete predominantly gray part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0023362) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2633](http://purl.obolibrary.org/obo/BIRNLEX_2633) + + +### obsolete predominantly gray part of posterior nuclear complex `http://purl.obolibrary.org/obo/UBERON_0028544` +#### Removed +- [obsolete predominantly gray part of posterior nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028544) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:772" + +#### Added +- [obsolete predominantly gray part of posterior nuclear complex](http://purl.obolibrary.org/obo/UBERON_0028544) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_772](http://purl.obolibrary.org/obo/BIRNLEX_772) + + +### obsolete predominantly gray part of rostral intralaminar nuclei `http://purl.obolibrary.org/obo/UBERON_0030330` +#### Removed +- [obsolete predominantly gray part of rostral intralaminar nuclei](http://purl.obolibrary.org/obo/UBERON_0030330) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:948" + +#### Added +- [obsolete predominantly gray part of rostral intralaminar nuclei](http://purl.obolibrary.org/obo/UBERON_0030330) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_948](http://purl.obolibrary.org/obo/BIRNLEX_948) + + +### obsolete predominantly gray part of solitary nucleus `http://purl.obolibrary.org/obo/UBERON_0025033` +#### Removed +- [obsolete predominantly gray part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0025033) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2660" + +#### Added +- [obsolete predominantly gray part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0025033) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2660](http://purl.obolibrary.org/obo/BIRNLEX_2660) + + +### obsolete predominantly gray part of ventral cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0024962` +#### Removed +- [obsolete predominantly gray part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0024962) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2571" + +#### Added +- [obsolete predominantly gray part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0024962) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2571](http://purl.obolibrary.org/obo/BIRNLEX_2571) + + +### obsolete predominantly gray posterior regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026456` +#### Removed +- [obsolete predominantly gray posterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026456) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1712" + +#### Added +- [obsolete predominantly gray posterior regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026456) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1712](http://purl.obolibrary.org/obo/BIRNLEX_1712) + + +### obsolete predominantly gray regional part of Parahippocampal gyrus `http://purl.obolibrary.org/obo/UBERON_0026032` +#### Removed +- [obsolete predominantly gray regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0026032) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1285" + +#### Added +- [obsolete predominantly gray regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0026032) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1285](http://purl.obolibrary.org/obo/BIRNLEX_1285) + + +### obsolete predominantly gray regional part of Preoptic area `http://purl.obolibrary.org/obo/UBERON_0026845` +#### Removed +- [obsolete predominantly gray regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0026845) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:700" + +#### Added +- [obsolete predominantly gray regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0026845) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_700](http://purl.obolibrary.org/obo/BIRNLEX_700) + + +### obsolete predominantly gray regional part of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0025764` +#### Removed +- [obsolete predominantly gray regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0025764) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1013" + +#### Added +- [obsolete predominantly gray regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0025764) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1013](http://purl.obolibrary.org/obo/BIRNLEX_1013) + + +### obsolete predominantly gray regional part of amygdala `http://purl.obolibrary.org/obo/UBERON_0028314` +#### Removed +- [obsolete predominantly gray regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0028314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2681" + +#### Added +- [obsolete predominantly gray regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0028314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2681](http://purl.obolibrary.org/obo/BIRNLEX_2681) + + +### obsolete predominantly gray regional part of anterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0024326` +#### Removed +- [obsolete predominantly gray regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1210" + +#### Added +- [obsolete predominantly gray regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1210](http://purl.obolibrary.org/obo/BIRNLEX_1210) + + +### obsolete predominantly gray regional part of anterior nuclear group `http://purl.obolibrary.org/obo/UBERON_0027728` +#### Removed +- [obsolete predominantly gray regional part of anterior nuclear group](http://purl.obolibrary.org/obo/UBERON_0027728) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1350" + +#### Added +- [obsolete predominantly gray regional part of anterior nuclear group](http://purl.obolibrary.org/obo/UBERON_0027728) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1350](http://purl.obolibrary.org/obo/BIRNLEX_1350) + + +### obsolete predominantly gray regional part of basal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0024622` +#### Removed +- [obsolete predominantly gray regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024622) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1507" + +#### Added +- [obsolete predominantly gray regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024622) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1507](http://purl.obolibrary.org/obo/BIRNLEX_1507) + + +### obsolete predominantly gray regional part of basal part of pons `http://purl.obolibrary.org/obo/UBERON_0025928` +#### Removed +- [obsolete predominantly gray regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1180" + +#### Added +- [obsolete predominantly gray regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025928) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1180](http://purl.obolibrary.org/obo/BIRNLEX_1180) + + +### obsolete predominantly gray regional part of cingulate gyrus `http://purl.obolibrary.org/obo/UBERON_0026296` +#### Removed +- [obsolete predominantly gray regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0026296) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1550" + +#### Added +- [obsolete predominantly gray regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0026296) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1550](http://purl.obolibrary.org/obo/BIRNLEX_1550) + + +### obsolete predominantly gray regional part of dentate gyrus `http://purl.obolibrary.org/obo/UBERON_0027563` +#### Removed +- [obsolete predominantly gray regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0027563) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1183" + +#### Added +- [obsolete predominantly gray regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0027563) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1183](http://purl.obolibrary.org/obo/BIRNLEX_1183) + + +### obsolete predominantly gray regional part of dentate nucleus `http://purl.obolibrary.org/obo/UBERON_0027417` +#### Removed +- [obsolete predominantly gray regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0027417) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1034" + +#### Added +- [obsolete predominantly gray regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0027417) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1034](http://purl.obolibrary.org/obo/BIRNLEX_1034) + + +### obsolete predominantly gray regional part of epithalamus `http://purl.obolibrary.org/obo/UBERON_0022647` +#### Removed +- [obsolete predominantly gray regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0022647) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1174" + +#### Added +- [obsolete predominantly gray regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0022647) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1174](http://purl.obolibrary.org/obo/BIRNLEX_1174) + + +### obsolete predominantly gray regional part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0024212` +#### Removed +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1093" + +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001870" + +#### Added +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1093](http://purl.obolibrary.org/obo/BIRNLEX_1093) + +- [obsolete predominantly gray regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024212) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [frontal cortex](http://purl.obolibrary.org/obo/UBERON_0001870) + + +### obsolete predominantly gray regional part of globus pallidus `http://purl.obolibrary.org/obo/UBERON_0031196` +#### Removed +- [obsolete predominantly gray regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0031196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1545" + +#### Added +- [obsolete predominantly gray regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0031196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1545](http://purl.obolibrary.org/obo/BIRNLEX_1545) + + +### obsolete predominantly gray regional part of habenula `http://purl.obolibrary.org/obo/UBERON_0024559` +#### Removed +- [obsolete predominantly gray regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0024559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1443" + +#### Added +- [obsolete predominantly gray regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0024559) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1443](http://purl.obolibrary.org/obo/BIRNLEX_1443) + + +### obsolete predominantly gray regional part of hippocampal formation `http://purl.obolibrary.org/obo/UBERON_0027828` +#### Removed +- [obsolete predominantly gray regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0027828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1449" + +#### Added +- [obsolete predominantly gray regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0027828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1449](http://purl.obolibrary.org/obo/BIRNLEX_1449) + + +### obsolete predominantly gray regional part of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0023127` +#### Removed +- [obsolete predominantly gray regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023127) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1656" + +#### Added +- [obsolete predominantly gray regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023127) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1656](http://purl.obolibrary.org/obo/BIRNLEX_1656) + + +### obsolete predominantly gray regional part of inferior colliculus `http://purl.obolibrary.org/obo/UBERON_0023587` +#### Removed +- [obsolete predominantly gray regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023587) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:718" + +#### Added +- [obsolete predominantly gray regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023587) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_718](http://purl.obolibrary.org/obo/BIRNLEX_718) + + +### obsolete predominantly gray regional part of inferior frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0026966` +#### Removed +- [obsolete predominantly gray regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:829" + +#### Added +- [obsolete predominantly gray regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_829](http://purl.obolibrary.org/obo/BIRNLEX_829) + + +### obsolete predominantly gray regional part of intermediate hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023102` +#### Removed +- [obsolete predominantly gray regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023102) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1630" + +#### Added +- [obsolete predominantly gray regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023102) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1630](http://purl.obolibrary.org/obo/BIRNLEX_1630) + + +### obsolete predominantly gray regional part of lateral geniculate body `http://purl.obolibrary.org/obo/UBERON_0029594` +#### Removed +- [obsolete predominantly gray regional part of lateral geniculate body](http://purl.obolibrary.org/obo/UBERON_0029594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1583" + +#### Added +- [obsolete predominantly gray regional part of lateral geniculate body](http://purl.obolibrary.org/obo/UBERON_0029594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1583](http://purl.obolibrary.org/obo/BIRNLEX_1583) + + +### obsolete predominantly gray regional part of lateral hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0022665` +#### Removed +- [obsolete predominantly gray regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1193" + +#### Added +- [obsolete predominantly gray regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1193](http://purl.obolibrary.org/obo/BIRNLEX_1193) + + +### obsolete predominantly gray regional part of lateral nuclear group `http://purl.obolibrary.org/obo/UBERON_0028744` +#### Removed +- [obsolete predominantly gray regional part of lateral nuclear group](http://purl.obolibrary.org/obo/UBERON_0028744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:997" + +#### Added +- [obsolete predominantly gray regional part of lateral nuclear group](http://purl.obolibrary.org/obo/UBERON_0028744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_997](http://purl.obolibrary.org/obo/BIRNLEX_997) + + +### obsolete predominantly gray regional part of limbic lobe `http://purl.obolibrary.org/obo/UBERON_0025337` +#### Removed +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016542" + +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:831" + +#### Added +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_831](http://purl.obolibrary.org/obo/BIRNLEX_831) + +- [obsolete predominantly gray regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0025337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [limbic cortex](http://purl.obolibrary.org/obo/UBERON_0016542) + + +### obsolete predominantly gray regional part of medial dorsal nucleus `http://purl.obolibrary.org/obo/UBERON_0027631` +#### Removed +- [obsolete predominantly gray regional part of medial dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_0027631) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1252" + +#### Added +- [obsolete predominantly gray regional part of medial dorsal nucleus](http://purl.obolibrary.org/obo/UBERON_0027631) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1252](http://purl.obolibrary.org/obo/BIRNLEX_1252) + + +### obsolete predominantly gray regional part of medial geniculate body `http://purl.obolibrary.org/obo/UBERON_0029603` +#### Removed +- [obsolete predominantly gray regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1592" + +#### Added +- [obsolete predominantly gray regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1592](http://purl.obolibrary.org/obo/BIRNLEX_1592) + + +### obsolete predominantly gray regional part of medial mammillary nucleus `http://purl.obolibrary.org/obo/UBERON_0024437` +#### Removed +- [obsolete predominantly gray regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024437) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1322" + +#### Added +- [obsolete predominantly gray regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024437) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1322](http://purl.obolibrary.org/obo/BIRNLEX_1322) + + +### obsolete predominantly gray regional part of median eminence `http://purl.obolibrary.org/obo/UBERON_0027651` +#### Removed +- [obsolete predominantly gray regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0027651) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1272" + +#### Added +- [obsolete predominantly gray regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0027651) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1272](http://purl.obolibrary.org/obo/BIRNLEX_1272) + + +### obsolete predominantly gray regional part of medullary raphe nuclear complex `http://purl.obolibrary.org/obo/UBERON_0022828` +#### Removed +- [obsolete predominantly gray regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1357" + +#### Added +- [obsolete predominantly gray regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1357](http://purl.obolibrary.org/obo/BIRNLEX_1357) + + +### obsolete predominantly gray regional part of metathalamus `http://purl.obolibrary.org/obo/UBERON_0027665` +#### Removed +- [obsolete predominantly gray regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1286" + +#### Added +- [obsolete predominantly gray regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027665) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1286](http://purl.obolibrary.org/obo/BIRNLEX_1286) + + +### obsolete predominantly gray regional part of midbrain reticular formation `http://purl.obolibrary.org/obo/UBERON_0024524` +#### Removed +- [obsolete predominantly gray regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0024524) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1408" + +#### Added +- [obsolete predominantly gray regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0024524) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1408](http://purl.obolibrary.org/obo/BIRNLEX_1408) + + +### obsolete predominantly gray regional part of midbrain tegmentum `http://purl.obolibrary.org/obo/UBERON_0022937` +#### Removed +- [obsolete predominantly gray regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1465" + +#### Added +- [obsolete predominantly gray regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1465](http://purl.obolibrary.org/obo/BIRNLEX_1465) + + +### obsolete predominantly gray regional part of midline nuclear group `http://purl.obolibrary.org/obo/UBERON_0028616` +#### Removed +- [obsolete predominantly gray regional part of midline nuclear group](http://purl.obolibrary.org/obo/UBERON_0028616) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:854" + +#### Added +- [obsolete predominantly gray regional part of midline nuclear group](http://purl.obolibrary.org/obo/UBERON_0028616) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_854](http://purl.obolibrary.org/obo/BIRNLEX_854) + + +### obsolete predominantly gray regional part of neostriatum `http://purl.obolibrary.org/obo/UBERON_0027600` +#### Removed +- [obsolete predominantly gray regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0027600) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1221" + +#### Added +- [obsolete predominantly gray regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0027600) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1221](http://purl.obolibrary.org/obo/BIRNLEX_1221) + + +### obsolete predominantly gray regional part of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0027052` +#### Removed +- [obsolete predominantly gray regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0027052) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:933" + +#### Added +- [obsolete predominantly gray regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0027052) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_933](http://purl.obolibrary.org/obo/BIRNLEX_933) + + +### obsolete predominantly gray regional part of occipital lobe `http://purl.obolibrary.org/obo/UBERON_0024501` +#### Removed +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1386" + +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016540" + +#### Added +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1386](http://purl.obolibrary.org/obo/BIRNLEX_1386) + +- [obsolete predominantly gray regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0024501) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [occipital cortex](http://purl.obolibrary.org/obo/UBERON_0016540) + + +### obsolete predominantly gray regional part of oculomotor nuclear complex `http://purl.obolibrary.org/obo/UBERON_0024528` +#### Removed +- [obsolete predominantly gray regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024528) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1412" + +#### Added +- [obsolete predominantly gray regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024528) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1412](http://purl.obolibrary.org/obo/BIRNLEX_1412) + + +### obsolete predominantly gray regional part of orbital gyri complex `http://purl.obolibrary.org/obo/UBERON_0025983` +#### Removed +- [obsolete predominantly gray regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0025983) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1236" + +#### Added +- [obsolete predominantly gray regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0025983) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1236](http://purl.obolibrary.org/obo/BIRNLEX_1236) + + +### obsolete predominantly gray regional part of parietal lobe `http://purl.obolibrary.org/obo/UBERON_0024314` +#### Removed +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016530" + +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1198" + +#### Added +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [parietal cortex](http://purl.obolibrary.org/obo/UBERON_0016530) + +- [obsolete predominantly gray regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0024314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1198](http://purl.obolibrary.org/obo/BIRNLEX_1198) + + +### obsolete predominantly gray regional part of pontine reticular formation `http://purl.obolibrary.org/obo/UBERON_0027453` +#### Removed +- [obsolete predominantly gray regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0027453) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1071" + +#### Added +- [obsolete predominantly gray regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0027453) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1071](http://purl.obolibrary.org/obo/BIRNLEX_1071) + + +### obsolete predominantly gray regional part of pontine tegmentum `http://purl.obolibrary.org/obo/UBERON_0025811` +#### Removed +- [obsolete predominantly gray regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0025811) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1061" + +#### Added +- [obsolete predominantly gray regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0025811) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1061](http://purl.obolibrary.org/obo/BIRNLEX_1061) + + +### obsolete predominantly gray regional part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0022701` +#### Removed +- [obsolete predominantly gray regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022701) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1229" + +#### Added +- [obsolete predominantly gray regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022701) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1229](http://purl.obolibrary.org/obo/BIRNLEX_1229) + + +### obsolete predominantly gray regional part of pretectal region `http://purl.obolibrary.org/obo/UBERON_0022480` +#### Removed +- [obsolete predominantly gray regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0022480) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1003" + +#### Added +- [obsolete predominantly gray regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0022480) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1003](http://purl.obolibrary.org/obo/BIRNLEX_1003) + + +### obsolete predominantly gray regional part of pulvinar `http://purl.obolibrary.org/obo/UBERON_0030242` +#### Removed +- [obsolete predominantly gray regional part of pulvinar](http://purl.obolibrary.org/obo/UBERON_0030242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:841" + +#### Added +- [obsolete predominantly gray regional part of pulvinar](http://purl.obolibrary.org/obo/UBERON_0030242) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_841](http://purl.obolibrary.org/obo/BIRNLEX_841) + + +### obsolete predominantly gray regional part of red nucleus `http://purl.obolibrary.org/obo/UBERON_0024541` +#### Removed +- [obsolete predominantly gray regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024541) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1425" + +#### Added +- [obsolete predominantly gray regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024541) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1425](http://purl.obolibrary.org/obo/BIRNLEX_1425) + + +### obsolete predominantly gray regional part of septal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0025338` +#### Removed +- [obsolete predominantly gray regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025338) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:832" + +#### Added +- [obsolete predominantly gray regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025338) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_832](http://purl.obolibrary.org/obo/BIRNLEX_832) + + +### obsolete predominantly gray regional part of substantia nigra `http://purl.obolibrary.org/obo/UBERON_0026921` +#### Removed +- [obsolete predominantly gray regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0026921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:782" + +#### Added +- [obsolete predominantly gray regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0026921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_782](http://purl.obolibrary.org/obo/BIRNLEX_782) + + +### obsolete predominantly gray regional part of superior olivary complex `http://purl.obolibrary.org/obo/UBERON_0027748` +#### Removed +- [obsolete predominantly gray regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1370" + +#### Added +- [obsolete predominantly gray regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027748) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1370](http://purl.obolibrary.org/obo/BIRNLEX_1370) + + +### obsolete predominantly gray regional part of superior olive `http://purl.obolibrary.org/obo/UBERON_0029396` +#### Removed +- [obsolete predominantly gray regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0029396) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1385" + +#### Added +- [obsolete predominantly gray regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0029396) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1385](http://purl.obolibrary.org/obo/BIRNLEX_1385) + + +### obsolete predominantly gray regional part of tectum `http://purl.obolibrary.org/obo/UBERON_0023677` +#### Removed +- [obsolete predominantly gray regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:815" + +#### Added +- [obsolete predominantly gray regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_815](http://purl.obolibrary.org/obo/BIRNLEX_815) + + +### obsolete predominantly gray regional part of temporal lobe `http://purl.obolibrary.org/obo/UBERON_0024749` +#### Removed +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0016538" + +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1633" + +#### Added +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1633](http://purl.obolibrary.org/obo/BIRNLEX_1633) + +- [obsolete predominantly gray regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024749) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [temporal cortex](http://purl.obolibrary.org/obo/UBERON_0016538) + + +### obsolete predominantly gray regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0024793` +#### Removed +- [obsolete predominantly gray regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024793) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1679" + +#### Added +- [obsolete predominantly gray regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024793) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1679](http://purl.obolibrary.org/obo/BIRNLEX_1679) + + +### obsolete predominantly gray regional part of transverse frontopolar gyri complex `http://purl.obolibrary.org/obo/UBERON_0026020` +#### Removed +- [obsolete predominantly gray regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0026020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1273" + +#### Added +- [obsolete predominantly gray regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0026020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1273](http://purl.obolibrary.org/obo/BIRNLEX_1273) + + +### obsolete predominantly gray regional part of ventral anterior nucleus `http://purl.obolibrary.org/obo/UBERON_0030119` +#### Removed +- [obsolete predominantly gray regional part of ventral anterior nucleus](http://purl.obolibrary.org/obo/UBERON_0030119) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:709" + +#### Added +- [obsolete predominantly gray regional part of ventral anterior nucleus](http://purl.obolibrary.org/obo/UBERON_0030119) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_709](http://purl.obolibrary.org/obo/BIRNLEX_709) + + +### obsolete predominantly gray regional part of ventral lateral nucleus `http://purl.obolibrary.org/obo/UBERON_0029140` +#### Removed +- [obsolete predominantly gray regional part of ventral lateral nucleus](http://purl.obolibrary.org/obo/UBERON_0029140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1124" + +#### Added +- [obsolete predominantly gray regional part of ventral lateral nucleus](http://purl.obolibrary.org/obo/UBERON_0029140) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1124](http://purl.obolibrary.org/obo/BIRNLEX_1124) + + +### obsolete predominantly gray regional part of ventral nuclear group `http://purl.obolibrary.org/obo/UBERON_0027604` +#### Removed +- [obsolete predominantly gray regional part of ventral nuclear group](http://purl.obolibrary.org/obo/UBERON_0027604) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1225" + +#### Added +- [obsolete predominantly gray regional part of ventral nuclear group](http://purl.obolibrary.org/obo/UBERON_0027604) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1225](http://purl.obolibrary.org/obo/BIRNLEX_1225) + + +### obsolete predominantly gray regional part of ventral posterior nucleus `http://purl.obolibrary.org/obo/UBERON_0029681` +#### Removed +- [obsolete predominantly gray regional part of ventral posterior nucleus](http://purl.obolibrary.org/obo/UBERON_0029681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1671" + +#### Added +- [obsolete predominantly gray regional part of ventral posterior nucleus](http://purl.obolibrary.org/obo/UBERON_0029681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1671](http://purl.obolibrary.org/obo/BIRNLEX_1671) + + +### obsolete predominantly gray regional part of ventral posterolateral nucleus `http://purl.obolibrary.org/obo/UBERON_0031314` +#### Removed +- [obsolete predominantly gray regional part of ventral posterolateral nucleus](http://purl.obolibrary.org/obo/UBERON_0031314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1664" + +#### Added +- [obsolete predominantly gray regional part of ventral posterolateral nucleus](http://purl.obolibrary.org/obo/UBERON_0031314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1664](http://purl.obolibrary.org/obo/BIRNLEX_1664) + + +### obsolete predominantly gray regional part of ventral posteromedial nucleus `http://purl.obolibrary.org/obo/UBERON_0031948` +#### Removed +- [obsolete predominantly gray regional part of ventral posteromedial nucleus](http://purl.obolibrary.org/obo/UBERON_0031948) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:924" + +#### Added +- [obsolete predominantly gray regional part of ventral posteromedial nucleus](http://purl.obolibrary.org/obo/UBERON_0031948) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_924](http://purl.obolibrary.org/obo/BIRNLEX_924) + + +### obsolete predominantly gray ventral regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026445` +#### Removed +- [obsolete predominantly gray ventral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026445) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1701" + +#### Added +- [obsolete predominantly gray ventral regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026445) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1701](http://purl.obolibrary.org/obo/BIRNLEX_1701) + + +### obsolete predominantly white dorsal regional part of medial geniculate body `http://purl.obolibrary.org/obo/UBERON_0029215` +#### Removed +- [obsolete predominantly white dorsal regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029215) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1203" + +#### Added +- [obsolete predominantly white dorsal regional part of medial geniculate body](http://purl.obolibrary.org/obo/UBERON_0029215) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1203](http://purl.obolibrary.org/obo/BIRNLEX_1203) + + +### obsolete predominantly white dorsal regional part of metathalamus `http://purl.obolibrary.org/obo/UBERON_0027687` +#### Removed +- [obsolete predominantly white dorsal regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1308" + +#### Added +- [obsolete predominantly white dorsal regional part of metathalamus](http://purl.obolibrary.org/obo/UBERON_0027687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1308](http://purl.obolibrary.org/obo/BIRNLEX_1308) + + +### obsolete predominantly white dorsal regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0026048` +#### Removed +- [obsolete predominantly white dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1301" + +#### Added +- [obsolete predominantly white dorsal regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0026048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1301](http://purl.obolibrary.org/obo/BIRNLEX_1301) + + +### obsolete predominantly white regional part of anterior commissure `http://purl.obolibrary.org/obo/UBERON_0026975` +#### Removed +- [obsolete predominantly white regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0026975) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:839" + +#### Added +- [obsolete predominantly white regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0026975) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_839](http://purl.obolibrary.org/obo/BIRNLEX_839) + + +### obsolete predominantly white regional part of anterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0024335` +#### Removed +- [obsolete predominantly white regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024335) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1219" + +#### Added +- [obsolete predominantly white regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0024335) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1219](http://purl.obolibrary.org/obo/BIRNLEX_1219) + + +### obsolete predominantly white regional part of basal part of pons `http://purl.obolibrary.org/obo/UBERON_0025778` +#### Removed +- [obsolete predominantly white regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1027" + +#### Added +- [obsolete predominantly white regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0025778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1027](http://purl.obolibrary.org/obo/BIRNLEX_1027) + + +### obsolete predominantly white regional part of cerebellar cortex `http://purl.obolibrary.org/obo/UBERON_0024211` +#### Removed +- [obsolete predominantly white regional part of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024211) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1092" + +#### Added +- [obsolete predominantly white regional part of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0024211) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1092](http://purl.obolibrary.org/obo/BIRNLEX_1092) + + +### obsolete predominantly white regional part of cerebral peduncle `http://purl.obolibrary.org/obo/UBERON_0024329` +#### Removed +- [obsolete predominantly white regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0024329) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1213" + +#### Added +- [obsolete predominantly white regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0024329) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1213](http://purl.obolibrary.org/obo/BIRNLEX_1213) + + +### obsolete predominantly white regional part of epithalamus `http://purl.obolibrary.org/obo/UBERON_0023092` +#### Removed +- [obsolete predominantly white regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0023092) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1620" + +#### Added +- [obsolete predominantly white regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0023092) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1620](http://purl.obolibrary.org/obo/BIRNLEX_1620) + + +### obsolete predominantly white regional part of fornix `http://purl.obolibrary.org/obo/UBERON_0025250` +#### Removed +- [obsolete predominantly white regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0025250) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:738" + +#### Added +- [obsolete predominantly white regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0025250) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_738](http://purl.obolibrary.org/obo/BIRNLEX_738) + + +### obsolete predominantly white regional part of globus pallidus `http://purl.obolibrary.org/obo/UBERON_0029629` +#### Removed +- [obsolete predominantly white regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0029629) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1617" + +#### Added +- [obsolete predominantly white regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0029629) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1617](http://purl.obolibrary.org/obo/BIRNLEX_1617) + + +### obsolete predominantly white regional part of hippocampal formation `http://purl.obolibrary.org/obo/UBERON_0025899` +#### Removed +- [obsolete predominantly white regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025899) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1149" + +#### Added +- [obsolete predominantly white regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025899) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1149](http://purl.obolibrary.org/obo/BIRNLEX_1149) + + +### obsolete predominantly white regional part of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0023649` +#### Removed +- [obsolete predominantly white regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:785" + +#### Added +- [obsolete predominantly white regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0023649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_785](http://purl.obolibrary.org/obo/BIRNLEX_785) + + +### obsolete predominantly white regional part of inferior colliculus `http://purl.obolibrary.org/obo/UBERON_0023825` +#### Removed +- [obsolete predominantly white regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023825) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:985" + +#### Added +- [obsolete predominantly white regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0023825) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_985](http://purl.obolibrary.org/obo/BIRNLEX_985) + + +### obsolete predominantly white regional part of midbrain tegmentum `http://purl.obolibrary.org/obo/UBERON_0022944` +#### Removed +- [obsolete predominantly white regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1472" + +#### Added +- [obsolete predominantly white regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0022944) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1472](http://purl.obolibrary.org/obo/BIRNLEX_1472) + + +### obsolete predominantly white regional part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023007` +#### Removed +- [obsolete predominantly white regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1536" + +#### Added +- [obsolete predominantly white regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1536](http://purl.obolibrary.org/obo/BIRNLEX_1536) + + +### obsolete predominantly white regional part of red nucleus `http://purl.obolibrary.org/obo/UBERON_0024550` +#### Removed +- [obsolete predominantly white regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024550) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1434" + +#### Added +- [obsolete predominantly white regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0024550) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1434](http://purl.obolibrary.org/obo/BIRNLEX_1434) + + +### obsolete predominantly white regional part of septum pellucidum `http://purl.obolibrary.org/obo/UBERON_0023020` +#### Removed +- [obsolete predominantly white regional part of septum pellucidum](http://purl.obolibrary.org/obo/UBERON_0023020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1549" + +#### Added +- [obsolete predominantly white regional part of septum pellucidum](http://purl.obolibrary.org/obo/UBERON_0023020) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1549](http://purl.obolibrary.org/obo/BIRNLEX_1549) + + +### obsolete predominantly white regional part of superior olivary complex `http://purl.obolibrary.org/obo/UBERON_0027755` +#### Removed +- [obsolete predominantly white regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027755) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1377" + +#### Added +- [obsolete predominantly white regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0027755) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1377](http://purl.obolibrary.org/obo/BIRNLEX_1377) + + +### obsolete predominantly white regional part of tectum `http://purl.obolibrary.org/obo/UBERON_0023670` +#### Removed +- [obsolete predominantly white regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023670) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:808" + +#### Added +- [obsolete predominantly white regional part of tectum](http://purl.obolibrary.org/obo/UBERON_0023670) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_808](http://purl.obolibrary.org/obo/BIRNLEX_808) + + +### obsolete predominantly white regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0024800` +#### Removed +- [obsolete predominantly white regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024800) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1686" + +#### Added +- [obsolete predominantly white regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0024800) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1686](http://purl.obolibrary.org/obo/BIRNLEX_1686) + + +### obsolete preganglionic parasympathetic nervous system `http://purl.obolibrary.org/obo/UBERON_0005073` +#### Removed +- [obsolete preganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005073) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011930" + +#### Added +- [obsolete preganglionic parasympathetic nervous system](http://purl.obolibrary.org/obo/UBERON_0005073) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [preganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011930) + + +### obsolete premaxillary tooth `http://purl.obolibrary.org/obo/UBERON_3000464` +#### Removed +- [obsolete premaxillary tooth](http://purl.obolibrary.org/obo/UBERON_3000464) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:2001626" + +#### Added +- [obsolete premaxillary tooth](http://purl.obolibrary.org/obo/UBERON_3000464) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [premaxillary tooth](http://purl.obolibrary.org/obo/UBERON_2001626) + + +### obsolete prementum `http://purl.obolibrary.org/obo/UBERON_0003166` +#### Removed +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004534" + +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000804" + +#### Added +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004534](http://purl.obolibrary.org/obo/FBbt_00004534) + +- [obsolete prementum](http://purl.obolibrary.org/obo/UBERON_0003166) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000804](http://purl.obolibrary.org/obo/HAO_0000804) + + +### obsolete preodontoblast `http://purl.obolibrary.org/obo/UBERON_4000041` +#### Removed +- [obsolete preodontoblast](http://purl.obolibrary.org/obo/UBERON_4000041) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007003" + +#### Added +- [obsolete preodontoblast](http://purl.obolibrary.org/obo/UBERON_4000041) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007003](http://purl.obolibrary.org/obo/CL_0007003) + + +### obsolete preosteoblast `http://purl.obolibrary.org/obo/UBERON_4000045` +#### Removed +- [obsolete preosteoblast](http://purl.obolibrary.org/obo/UBERON_4000045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007010" + +#### Added +- [obsolete preosteoblast](http://purl.obolibrary.org/obo/UBERON_4000045) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007010](http://purl.obolibrary.org/obo/CL_0007010) + + +### obsolete prescutum `http://purl.obolibrary.org/obo/UBERON_0003175` +#### Removed +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004582" + +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000815" + +#### Added +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004582](http://purl.obolibrary.org/obo/FBbt_00004582) + +- [obsolete prescutum](http://purl.obolibrary.org/obo/UBERON_0003175) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000815](http://purl.obolibrary.org/obo/HAO_0000815) + + +### obsolete pretarsus `http://purl.obolibrary.org/obo/UBERON_0003187` +#### Removed +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004653" + +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000820" + +#### Added +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000820](http://purl.obolibrary.org/obo/HAO_0000820) + +- [obsolete pretarsus](http://purl.obolibrary.org/obo/UBERON_0003187) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004653](http://purl.obolibrary.org/obo/FBbt_00004653) + + +### obsolete prezygapophyses `http://purl.obolibrary.org/obo/UBERON_4100120` +#### Removed +- [obsolete prezygapophyses](http://purl.obolibrary.org/obo/UBERON_4100120) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001079" + +#### Added +- [obsolete prezygapophyses](http://purl.obolibrary.org/obo/UBERON_4100120) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [prezygapophysis](http://purl.obolibrary.org/obo/UBERON_0001079) + + +### obsolete primary oogonium `http://purl.obolibrary.org/obo/UBERON_3010297` +#### Removed +- [obsolete primary oogonium](http://purl.obolibrary.org/obo/UBERON_3010297) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000654" + +#### Added +- [obsolete primary oogonium](http://purl.obolibrary.org/obo/UBERON_3010297) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000654](http://purl.obolibrary.org/obo/CL_0000654) + + +### obsolete primary spermatogonium `http://purl.obolibrary.org/obo/UBERON_3010298` +#### Removed +- [obsolete primary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010298) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000656" + +#### Added +- [obsolete primary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010298) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000656](http://purl.obolibrary.org/obo/CL_0000656) + + +### obsolete primordial germ cell `http://purl.obolibrary.org/obo/UBERON_3010293` +#### Removed +- [obsolete primordial germ cell](http://purl.obolibrary.org/obo/UBERON_3010293) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000670" + +#### Added +- [obsolete primordial germ cell](http://purl.obolibrary.org/obo/UBERON_3010293) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000670](http://purl.obolibrary.org/obo/CL_0000670) + + +### obsolete principal cavity `http://purl.obolibrary.org/obo/UBERON_3000992` +#### Removed +- [obsolete principal cavity](http://purl.obolibrary.org/obo/UBERON_3000992) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000089" + +#### Added +- [obsolete principal cavity](http://purl.obolibrary.org/obo/UBERON_3000992) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cavum principale](http://purl.obolibrary.org/obo/UBERON_3000089) + + +### obsolete proboscis `http://purl.obolibrary.org/obo/UBERON_0035961` +#### Removed +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0014479" + +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0001117" + +#### Added +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [elephant trunk](http://purl.obolibrary.org/obo/UBERON_0014479) + +- [obsolete proboscis](http://purl.obolibrary.org/obo/UBERON_0035961) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0001117](http://purl.obolibrary.org/obo/BTO_0001117) + + +### obsolete proneural cluster `http://purl.obolibrary.org/obo/UBERON_0000937` +#### Removed +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000068" + +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00001135" + +#### Added +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000068](http://purl.obolibrary.org/obo/ZFA_0000068) + +- [obsolete proneural cluster](http://purl.obolibrary.org/obo/UBERON_0000937) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00001135](http://purl.obolibrary.org/obo/FBbt_00001135) + + +### obsolete pronotum `http://purl.obolibrary.org/obo/UBERON_0003173` +#### Removed +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000853" + +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004561" + +#### Added +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004561](http://purl.obolibrary.org/obo/FBbt_00004561) + +- [obsolete pronotum](http://purl.obolibrary.org/obo/UBERON_0003173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000853](http://purl.obolibrary.org/obo/HAO_0000853) + + +### obsolete pronucleus `http://purl.obolibrary.org/obo/UBERON_0000921` +#### Removed +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0045120" + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:84673" + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000048" + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0045120" + +#### Added +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0045120](http://purl.obolibrary.org/obo/GO_0045120) + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000048](http://purl.obolibrary.org/obo/FBbt_00000048) + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_84673](http://purl.obolibrary.org/obo/FMA_84673) + +- [obsolete pronucleus](http://purl.obolibrary.org/obo/UBERON_0000921) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0045120](http://purl.obolibrary.org/obo/GO_0045120) + + +### obsolete proteinaceous extracellular matrix `http://purl.obolibrary.org/obo/UBERON_0011586` +#### Removed +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VSAO:0000021" + +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0005578" + +#### Added +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0005578](http://purl.obolibrary.org/obo/GO_0005578) + +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_0011586) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VSAO_0000021](http://purl.obolibrary.org/obo/VSAO_0000021) + + +### obsolete proteinaceous extracellular matrix `http://purl.obolibrary.org/obo/UBERON_4000021` +#### Removed +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000021) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0005578" + +#### Added +- [obsolete proteinaceous extracellular matrix](http://purl.obolibrary.org/obo/UBERON_4000021) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0005578](http://purl.obolibrary.org/obo/GO_0005578) + + +### obsolete pterygoid `http://purl.obolibrary.org/obo/UBERON_3000521` +#### Removed +- [obsolete pterygoid](http://purl.obolibrary.org/obo/UBERON_3000521) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010389" + +#### Added +- [obsolete pterygoid](http://purl.obolibrary.org/obo/UBERON_3000521) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pterygoid bone](http://purl.obolibrary.org/obo/UBERON_0010389) + + +### obsolete pterygoideus `http://purl.obolibrary.org/obo/UBERON_3010730` +#### Removed +- [obsolete pterygoideus](http://purl.obolibrary.org/obo/UBERON_3010730) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006720" + +#### Added +- [obsolete pterygoideus](http://purl.obolibrary.org/obo/UBERON_3010730) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [pterygoid muscle](http://purl.obolibrary.org/obo/UBERON_0006720) + + +### obsolete pyloric caecum `http://purl.obolibrary.org/obo/UBERON_2002253` +#### Removed +- [obsolete pyloric caecum](http://purl.obolibrary.org/obo/UBERON_2002253) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008248" + +#### Added +- [obsolete pyloric caecum](http://purl.obolibrary.org/obo/UBERON_2002253) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [echinoderm pyloric cecum](http://purl.obolibrary.org/obo/UBERON_0008248) + + +### obsolete rectal gland `http://purl.obolibrary.org/obo/UBERON_0000360` +#### Removed +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004760" + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004758" + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004757" + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004759" + +#### Added +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [salt gland](http://purl.obolibrary.org/obo/UBERON_0004758) + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [rectal salt gland](http://purl.obolibrary.org/obo/UBERON_0004757) + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [cranial salt gland](http://purl.obolibrary.org/obo/UBERON_0004759) + +- [obsolete rectal gland](http://purl.obolibrary.org/obo/UBERON_0000360) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [gland of anal canal](http://purl.obolibrary.org/obo/UBERON_0004760) + + +### obsolete region of thorax `http://purl.obolibrary.org/obo/UBERON_0005482` +#### Removed +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:20358" + +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:425803006" + +#### Added +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_20358](http://purl.obolibrary.org/obo/FMA_20358) + +- [obsolete region of thorax](http://purl.obolibrary.org/obo/UBERON_0005482) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_425803006](http://purl.obolibrary.org/obo/SCTID_425803006) + + +### obsolete regional Parts of the Interpositus Nucleus `http://purl.obolibrary.org/obo/UBERON_0027314` +#### Removed +- [obsolete regional Parts of the Interpositus Nucleus](http://purl.obolibrary.org/obo/UBERON_0027314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20081243" + +#### Added +- [obsolete regional Parts of the Interpositus Nucleus](http://purl.obolibrary.org/obo/UBERON_0027314) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20081243](http://purl.obolibrary.org/obo/NLXANAT_20081243) + + +### obsolete regional part of Anterior cingulate cortex `http://purl.obolibrary.org/obo/UBERON_0027076` +#### Removed +- [obsolete regional part of Anterior cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0027076) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:960" + +#### Added +- [obsolete regional part of Anterior cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0027076) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_960](http://purl.obolibrary.org/obo/BIRNLEX_960) + + +### obsolete regional part of Parahippocampal gyrus `http://purl.obolibrary.org/obo/UBERON_0024394` +#### Removed +- [obsolete regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0024394) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1278" + +#### Added +- [obsolete regional part of Parahippocampal gyrus](http://purl.obolibrary.org/obo/UBERON_0024394) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1278](http://purl.obolibrary.org/obo/BIRNLEX_1278) + + +### obsolete regional part of Preoptic area `http://purl.obolibrary.org/obo/UBERON_0024828` +#### Removed +- [obsolete regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0024828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1715" + +#### Added +- [obsolete regional part of Preoptic area](http://purl.obolibrary.org/obo/UBERON_0024828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1715](http://purl.obolibrary.org/obo/BIRNLEX_1715) + + +### obsolete regional part of a lobe of the cerebellum `http://purl.obolibrary.org/obo/UBERON_0022569` +#### Removed +- [obsolete regional part of a lobe of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0022569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1094" + +#### Added +- [obsolete regional part of a lobe of the cerebellum](http://purl.obolibrary.org/obo/UBERON_0022569) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1094](http://purl.obolibrary.org/obo/BIRNLEX_1094) + + +### obsolete regional part of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0024125` +#### Removed +- [obsolete regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0024125) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1004" + +#### Added +- [obsolete regional part of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0024125) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1004](http://purl.obolibrary.org/obo/BIRNLEX_1004) + + +### obsolete regional part of amygdala `http://purl.obolibrary.org/obo/UBERON_0023404` +#### Removed +- [obsolete regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0023404) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2678" + +#### Added +- [obsolete regional part of amygdala](http://purl.obolibrary.org/obo/UBERON_0023404) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2678](http://purl.obolibrary.org/obo/BIRNLEX_2678) + + +### obsolete regional part of anterior commissure `http://purl.obolibrary.org/obo/UBERON_0025254` +#### Removed +- [obsolete regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0025254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:742" + +#### Added +- [obsolete regional part of anterior commissure](http://purl.obolibrary.org/obo/UBERON_0025254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_742](http://purl.obolibrary.org/obo/BIRNLEX_742) + + +### obsolete regional part of anterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023628` +#### Removed +- [obsolete regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023628) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:761" + +#### Added +- [obsolete regional part of anterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023628) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_761](http://purl.obolibrary.org/obo/BIRNLEX_761) + + +### obsolete regional part of anterior nucleus of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0025848` +#### Removed +- [obsolete regional part of anterior nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0025848) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1098" + +#### Added +- [obsolete regional part of anterior nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0025848) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1098](http://purl.obolibrary.org/obo/BIRNLEX_1098) + + +### obsolete regional part of autonomic nervous system `http://purl.obolibrary.org/obo/UBERON_0024254` +#### Removed +- [obsolete regional part of autonomic nervous system](http://purl.obolibrary.org/obo/UBERON_0024254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1134" + +#### Added +- [obsolete regional part of autonomic nervous system](http://purl.obolibrary.org/obo/UBERON_0024254) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1134](http://purl.obolibrary.org/obo/BIRNLEX_1134) + + +### obsolete regional part of basal amygdaloid nucleus `http://purl.obolibrary.org/obo/UBERON_0028326` +#### Removed +- [obsolete regional part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0028326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2693" + +#### Added +- [obsolete regional part of basal amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0028326) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2693](http://purl.obolibrary.org/obo/BIRNLEX_2693) + + +### obsolete regional part of basal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0023572` +#### Removed +- [obsolete regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023572) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:702" + +#### Added +- [obsolete regional part of basal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023572) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_702](http://purl.obolibrary.org/obo/BIRNLEX_702) + + +### obsolete regional part of basal part of pons `http://purl.obolibrary.org/obo/UBERON_0024285` +#### Removed +- [obsolete regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0024285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1168" + +#### Added +- [obsolete regional part of basal part of pons](http://purl.obolibrary.org/obo/UBERON_0024285) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1168](http://purl.obolibrary.org/obo/BIRNLEX_1168) + + +### obsolete regional part of basilar membrane `http://purl.obolibrary.org/obo/UBERON_0029822` +#### Removed +- [obsolete regional part of basilar membrane](http://purl.obolibrary.org/obo/UBERON_0029822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2527" + +#### Added +- [obsolete regional part of basilar membrane](http://purl.obolibrary.org/obo/UBERON_0029822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2527](http://purl.obolibrary.org/obo/BIRNLEX_2527) + + +### obsolete regional part of basolateral nuclear complex `http://purl.obolibrary.org/obo/UBERON_0026686` +#### Removed +- [obsolete regional part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026686) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2685" + +#### Added +- [obsolete regional part of basolateral nuclear complex](http://purl.obolibrary.org/obo/UBERON_0026686) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2685](http://purl.obolibrary.org/obo/BIRNLEX_2685) + + +### obsolete regional part of body system `http://purl.obolibrary.org/obo/UBERON_0022575` +#### Removed +- [obsolete regional part of body system](http://purl.obolibrary.org/obo/UBERON_0022575) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:11" + +#### Added +- [obsolete regional part of body system](http://purl.obolibrary.org/obo/UBERON_0022575) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_11](http://purl.obolibrary.org/obo/BIRNLEX_11) + + +### obsolete regional part of calcarine sulcus `http://purl.obolibrary.org/obo/UBERON_0026762` +#### Removed +- [obsolete regional part of calcarine sulcus](http://purl.obolibrary.org/obo/UBERON_0026762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4049" + +#### Added +- [obsolete regional part of calcarine sulcus](http://purl.obolibrary.org/obo/UBERON_0026762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4049](http://purl.obolibrary.org/obo/BIRNLEX_4049) + + +### obsolete regional part of caudate nucleus `http://purl.obolibrary.org/obo/UBERON_0027584` +#### Removed +- [obsolete regional part of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1205" + +#### Added +- [obsolete regional part of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1205](http://purl.obolibrary.org/obo/BIRNLEX_1205) + + +### obsolete regional part of central nervous system `http://purl.obolibrary.org/obo/UBERON_0022741` +#### Removed +- [obsolete regional part of central nervous system](http://purl.obolibrary.org/obo/UBERON_0022741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1269" + +#### Added +- [obsolete regional part of central nervous system](http://purl.obolibrary.org/obo/UBERON_0022741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1269](http://purl.obolibrary.org/obo/BIRNLEX_1269) + + +### obsolete regional part of cerebellar peduncular complex `http://purl.obolibrary.org/obo/UBERON_0027094` +#### Removed +- [obsolete regional part of cerebellar peduncular complex](http://purl.obolibrary.org/obo/UBERON_0027094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:979" + +#### Added +- [obsolete regional part of cerebellar peduncular complex](http://purl.obolibrary.org/obo/UBERON_0027094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_979](http://purl.obolibrary.org/obo/BIRNLEX_979) + + +### obsolete regional part of cerebellar white matter `http://purl.obolibrary.org/obo/UBERON_0025444` +#### Removed +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0025444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:959" + +#### Added +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0025444) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_959](http://purl.obolibrary.org/obo/BIRNLEX_959) + + +### obsolete regional part of cerebellar white matter `http://purl.obolibrary.org/obo/UBERON_0003035` +#### Removed +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:72547" + +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:959" + +#### Added +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_959](http://purl.obolibrary.org/obo/BIRNLEX_959) + +- [obsolete regional part of cerebellar white matter](http://purl.obolibrary.org/obo/UBERON_0003035) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_72547](http://purl.obolibrary.org/obo/FMA_72547) + + +### obsolete regional part of cerebellum `http://purl.obolibrary.org/obo/UBERON_0002946` +#### Removed +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119242005" + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:256150" + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:748" + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002037" + +#### Added +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119242005](http://purl.obolibrary.org/obo/SCTID_119242005) + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_748](http://purl.obolibrary.org/obo/BIRNLEX_748) + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_256150](http://purl.obolibrary.org/obo/FMA_256150) + +- [obsolete regional part of cerebellum](http://purl.obolibrary.org/obo/UBERON_0002946) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [cerebellum](http://purl.obolibrary.org/obo/UBERON_0002037) + + +### obsolete regional part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0002619` +#### Removed +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0000187" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119408004" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1173" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:35589" + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:242193" + +#### Added +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_242193](http://purl.obolibrary.org/obo/FMA_242193) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119408004](http://purl.obolibrary.org/obo/SCTID_119408004) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0000187](http://purl.obolibrary.org/obo/MA_0000187) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_35589](http://purl.obolibrary.org/obo/EMAPA_35589) + +- [obsolete regional part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0002619) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1173](http://purl.obolibrary.org/obo/BIRNLEX_1173) + + +### obsolete regional part of cerebral peduncle `http://purl.obolibrary.org/obo/UBERON_0022681` +#### Removed +- [obsolete regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0022681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1209" + +#### Added +- [obsolete regional part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0022681) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1209](http://purl.obolibrary.org/obo/BIRNLEX_1209) + + +### obsolete regional part of cerebral ventricular cavity `http://purl.obolibrary.org/obo/UBERON_0026000` +#### Removed +- [obsolete regional part of cerebral ventricular cavity](http://purl.obolibrary.org/obo/UBERON_0026000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1253" + +#### Added +- [obsolete regional part of cerebral ventricular cavity](http://purl.obolibrary.org/obo/UBERON_0026000) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1253](http://purl.obolibrary.org/obo/BIRNLEX_1253) + + +### obsolete regional part of cerebral white matter `http://purl.obolibrary.org/obo/UBERON_0023044` +#### Removed +- [obsolete regional part of cerebral white matter](http://purl.obolibrary.org/obo/UBERON_0023044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1573" + +#### Added +- [obsolete regional part of cerebral white matter](http://purl.obolibrary.org/obo/UBERON_0023044) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1573](http://purl.obolibrary.org/obo/BIRNLEX_1573) + + +### obsolete regional part of cervical spinal cord `http://purl.obolibrary.org/obo/UBERON_0022976` +#### Removed +- [obsolete regional part of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0022976) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1505" + +#### Added +- [obsolete regional part of cervical spinal cord](http://purl.obolibrary.org/obo/UBERON_0022976) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1505](http://purl.obolibrary.org/obo/BIRNLEX_1505) + + +### obsolete regional part of cervical spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0028079` +#### Removed +- [obsolete regional part of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0028079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1703" + +#### Added +- [obsolete regional part of cervical spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0028079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1703](http://purl.obolibrary.org/obo/BIRNLEX_1703) + + +### obsolete regional part of cervical spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0026271` +#### Removed +- [obsolete regional part of cervical spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0026271) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1525" + +#### Added +- [obsolete regional part of cervical spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0026271) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1525](http://purl.obolibrary.org/obo/BIRNLEX_1525) + + +### obsolete regional part of cervical spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0025236` +#### Removed +- [obsolete regional part of cervical spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0025236) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:723" + +#### Added +- [obsolete regional part of cervical spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0025236) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_723](http://purl.obolibrary.org/obo/BIRNLEX_723) + + +### obsolete regional part of cingulate cortex `http://purl.obolibrary.org/obo/UBERON_0025418` +#### Removed +- [obsolete regional part of cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0025418) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:930" + +#### Added +- [obsolete regional part of cingulate cortex](http://purl.obolibrary.org/obo/UBERON_0025418) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_930](http://purl.obolibrary.org/obo/BIRNLEX_930) + + +### obsolete regional part of cingulate gyrus `http://purl.obolibrary.org/obo/UBERON_0024714` +#### Removed +- [obsolete regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0024714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1599" + +#### Added +- [obsolete regional part of cingulate gyrus](http://purl.obolibrary.org/obo/UBERON_0024714) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1599](http://purl.obolibrary.org/obo/BIRNLEX_1599) + + +### obsolete regional part of cochlea `http://purl.obolibrary.org/obo/UBERON_0026536` +#### Removed +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1794" + +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0931696" + +#### Added +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1794](http://purl.obolibrary.org/obo/BIRNLEX_1794) + +- [obsolete regional part of cochlea](http://purl.obolibrary.org/obo/UBERON_0026536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0931696](http://purl.obolibrary.org/obo/UMLS_C0931696) + + +### obsolete regional part of cochlear canal `http://purl.obolibrary.org/obo/UBERON_0024946` +#### Removed +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0458763" + +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2554" + +#### Added +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2554](http://purl.obolibrary.org/obo/BIRNLEX_2554) + +- [obsolete regional part of cochlear canal](http://purl.obolibrary.org/obo/UBERON_0024946) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0458763](http://purl.obolibrary.org/obo/UMLS_C0458763) + + +### obsolete regional part of cochlear duct `http://purl.obolibrary.org/obo/UBERON_0026588` +#### Removed +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2565" + +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C1186240" + +#### Added +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2565](http://purl.obolibrary.org/obo/BIRNLEX_2565) + +- [obsolete regional part of cochlear duct](http://purl.obolibrary.org/obo/UBERON_0026588) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C1186240](http://purl.obolibrary.org/obo/UMLS_C1186240) + + +### obsolete regional part of cochlear nuclear complex `http://purl.obolibrary.org/obo/UBERON_0002621` +#### Removed +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1195" + +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:83952" + +#### Added +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1195](http://purl.obolibrary.org/obo/BIRNLEX_1195) + +- [obsolete regional part of cochlear nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_83952](http://purl.obolibrary.org/obo/FMA_83952) + + +### obsolete regional part of corticomedial nuclear complex `http://purl.obolibrary.org/obo/UBERON_0025067` +#### Removed +- [obsolete regional part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025067) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2697" + +#### Added +- [obsolete regional part of corticomedial nuclear complex](http://purl.obolibrary.org/obo/UBERON_0025067) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2697](http://purl.obolibrary.org/obo/BIRNLEX_2697) + + +### obsolete regional part of deep cerebellar nuclear complex `http://purl.obolibrary.org/obo/UBERON_0024234` +#### Removed +- [obsolete regional part of deep cerebellar nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1114" + +#### Added +- [obsolete regional part of deep cerebellar nuclear complex](http://purl.obolibrary.org/obo/UBERON_0024234) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1114](http://purl.obolibrary.org/obo/BIRNLEX_1114) + + +### obsolete regional part of dentate gyrus `http://purl.obolibrary.org/obo/UBERON_0025897` +#### Removed +- [obsolete regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0025897) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1147" + +#### Added +- [obsolete regional part of dentate gyrus](http://purl.obolibrary.org/obo/UBERON_0025897) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1147](http://purl.obolibrary.org/obo/BIRNLEX_1147) + + +### obsolete regional part of dentate nucleus `http://purl.obolibrary.org/obo/UBERON_0025930` +#### Removed +- [obsolete regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0025930) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1182" + +#### Added +- [obsolete regional part of dentate nucleus](http://purl.obolibrary.org/obo/UBERON_0025930) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1182](http://purl.obolibrary.org/obo/BIRNLEX_1182) + + +### obsolete regional part of diencephalon `http://purl.obolibrary.org/obo/UBERON_0002784` +#### Removed +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1685" + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119264001" + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62005" + +#### Added +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62005](http://purl.obolibrary.org/obo/FMA_62005) + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1685](http://purl.obolibrary.org/obo/BIRNLEX_1685) + +- [obsolete regional part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0002784) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119264001](http://purl.obolibrary.org/obo/SCTID_119264001) + + +### obsolete regional part of dorsal cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0025744` +#### Removed +- [obsolete regional part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0025744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090510" + +#### Added +- [obsolete regional part of dorsal cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0025744) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090510](http://purl.obolibrary.org/obo/NLXANAT_20090510) + + +### obsolete regional part of ear `http://purl.obolibrary.org/obo/UBERON_0022654` +#### Removed +- [obsolete regional part of ear](http://purl.obolibrary.org/obo/UBERON_0022654) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1181" + +#### Added +- [obsolete regional part of ear](http://purl.obolibrary.org/obo/UBERON_0022654) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1181](http://purl.obolibrary.org/obo/BIRNLEX_1181) + + +### obsolete regional part of enteric nervous system `http://purl.obolibrary.org/obo/UBERON_0025927` +#### Removed +- [obsolete regional part of enteric nervous system](http://purl.obolibrary.org/obo/UBERON_0025927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1179" + +#### Added +- [obsolete regional part of enteric nervous system](http://purl.obolibrary.org/obo/UBERON_0025927) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1179](http://purl.obolibrary.org/obo/BIRNLEX_1179) + + +### obsolete regional part of entorhinal cortex `http://purl.obolibrary.org/obo/UBERON_0028337` +#### Removed +- [obsolete regional part of entorhinal cortex](http://purl.obolibrary.org/obo/UBERON_0028337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2704" + +#### Added +- [obsolete regional part of entorhinal cortex](http://purl.obolibrary.org/obo/UBERON_0028337) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2704](http://purl.obolibrary.org/obo/BIRNLEX_2704) + + +### obsolete regional part of epithalamus `http://purl.obolibrary.org/obo/UBERON_0002757` +#### Removed +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1607" + +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62013" + +#### Added +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1607](http://purl.obolibrary.org/obo/BIRNLEX_1607) + +- [obsolete regional part of epithalamus](http://purl.obolibrary.org/obo/UBERON_0002757) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62013](http://purl.obolibrary.org/obo/FMA_62013) + + +### obsolete regional part of eye `http://purl.obolibrary.org/obo/UBERON_0022620` +#### Removed +- [obsolete regional part of eye](http://purl.obolibrary.org/obo/UBERON_0022620) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1145" + +#### Added +- [obsolete regional part of eye](http://purl.obolibrary.org/obo/UBERON_0022620) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1145](http://purl.obolibrary.org/obo/BIRNLEX_1145) + + +### obsolete regional part of forebrain `http://purl.obolibrary.org/obo/UBERON_0002780` +#### Removed +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1677" + +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61996" + +#### Added +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1677](http://purl.obolibrary.org/obo/BIRNLEX_1677) + +- [obsolete regional part of forebrain](http://purl.obolibrary.org/obo/UBERON_0002780) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61996](http://purl.obolibrary.org/obo/FMA_61996) + + +### obsolete regional part of fornix `http://purl.obolibrary.org/obo/UBERON_0023703` +#### Removed +- [obsolete regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0023703) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:842" + +#### Added +- [obsolete regional part of fornix](http://purl.obolibrary.org/obo/UBERON_0023703) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_842](http://purl.obolibrary.org/obo/BIRNLEX_842) + + +### obsolete regional part of fovea `http://purl.obolibrary.org/obo/UBERON_0028200` +#### Removed +- [obsolete regional part of fovea](http://purl.obolibrary.org/obo/UBERON_0028200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2545" + +#### Added +- [obsolete regional part of fovea](http://purl.obolibrary.org/obo/UBERON_0028200) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2545](http://purl.obolibrary.org/obo/BIRNLEX_2545) + + +### obsolete regional part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0023824` +#### Removed +- [obsolete regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0023824) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:984" + +#### Added +- [obsolete regional part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0023824) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_984](http://purl.obolibrary.org/obo/BIRNLEX_984) + + +### obsolete regional part of globus pallidus `http://purl.obolibrary.org/obo/UBERON_0027603` +#### Removed +- [obsolete regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0027603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1224" + +#### Added +- [obsolete regional part of globus pallidus](http://purl.obolibrary.org/obo/UBERON_0027603) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1224](http://purl.obolibrary.org/obo/BIRNLEX_1224) + + +### obsolete regional part of granular layer of cerebellar cortex `http://purl.obolibrary.org/obo/UBERON_0023648` +#### Removed +- [obsolete regional part of granular layer of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0023648) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:784" + +#### Added +- [obsolete regional part of granular layer of cerebellar cortex](http://purl.obolibrary.org/obo/UBERON_0023648) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_784](http://purl.obolibrary.org/obo/BIRNLEX_784) + + +### obsolete regional part of gustatory epithelium `http://purl.obolibrary.org/obo/UBERON_0025182` +#### Removed +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4100" + +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "http://uri.neuinfo.org/nif/nifstd/nifext_13" + +#### Added +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4100](http://purl.obolibrary.org/obo/BIRNLEX_4100) + +- [obsolete regional part of gustatory epithelium](http://purl.obolibrary.org/obo/UBERON_0025182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [nifext_13](http://uri.neuinfo.org/nif/nifstd/nifext_13) + + +### obsolete regional part of habenula `http://purl.obolibrary.org/obo/UBERON_0022895` +#### Removed +- [obsolete regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0022895) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1423" + +#### Added +- [obsolete regional part of habenula](http://purl.obolibrary.org/obo/UBERON_0022895) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1423](http://purl.obolibrary.org/obo/BIRNLEX_1423) + + +### obsolete regional part of hindbrain `http://purl.obolibrary.org/obo/UBERON_0023791` +#### Removed +- [obsolete regional part of hindbrain](http://purl.obolibrary.org/obo/UBERON_0023791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:949" + +#### Added +- [obsolete regional part of hindbrain](http://purl.obolibrary.org/obo/UBERON_0023791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_949](http://purl.obolibrary.org/obo/BIRNLEX_949) + + +### obsolete regional part of hippocampal formation `http://purl.obolibrary.org/obo/UBERON_0025268` +#### Removed +- [obsolete regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025268) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:757" + +#### Added +- [obsolete regional part of hippocampal formation](http://purl.obolibrary.org/obo/UBERON_0025268) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_757](http://purl.obolibrary.org/obo/BIRNLEX_757) + + +### obsolete regional part of hippocampus proper `http://purl.obolibrary.org/obo/UBERON_0025934` +#### Removed +- [obsolete regional part of hippocampus proper](http://purl.obolibrary.org/obo/UBERON_0025934) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1186" + +#### Added +- [obsolete regional part of hippocampus proper](http://purl.obolibrary.org/obo/UBERON_0025934) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1186](http://purl.obolibrary.org/obo/BIRNLEX_1186) + + +### obsolete regional part of hypophysis `http://purl.obolibrary.org/obo/UBERON_0023047` +#### Removed +- [obsolete regional part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0023047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1576" + +#### Added +- [obsolete regional part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0023047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1576](http://purl.obolibrary.org/obo/BIRNLEX_1576) + + +### obsolete regional part of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0003048` +#### Removed +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:995" + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67706" + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:360454003" + +#### Added +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_995](http://purl.obolibrary.org/obo/BIRNLEX_995) + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67706](http://purl.obolibrary.org/obo/FMA_67706) + +- [obsolete regional part of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0003048) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_360454003](http://purl.obolibrary.org/obo/SCTID_360454003) + + +### obsolete regional part of inferior colliculus `http://purl.obolibrary.org/obo/UBERON_0002917` +#### Removed +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4036" + +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77871" + +#### Added +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77871](http://purl.obolibrary.org/obo/FMA_77871) + +- [obsolete regional part of inferior colliculus](http://purl.obolibrary.org/obo/UBERON_0002917) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4036](http://purl.obolibrary.org/obo/BIRNLEX_4036) + + +### obsolete regional part of inferior frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0025327` +#### Removed +- [obsolete regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0025327) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:821" + +#### Added +- [obsolete regional part of inferior frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0025327) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_821](http://purl.obolibrary.org/obo/BIRNLEX_821) + + +### obsolete regional part of inferior olivary complex `http://purl.obolibrary.org/obo/UBERON_0002574` +#### Removed +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1052" + +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71259" + +#### Added +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1052](http://purl.obolibrary.org/obo/BIRNLEX_1052) + +- [obsolete regional part of inferior olivary complex](http://purl.obolibrary.org/obo/UBERON_0002574) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71259](http://purl.obolibrary.org/obo/FMA_71259) + + +### obsolete regional part of inferior parietal cortex `http://purl.obolibrary.org/obo/UBERON_0024479` +#### Removed +- [obsolete regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0024479) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1364" + +#### Added +- [obsolete regional part of inferior parietal cortex](http://purl.obolibrary.org/obo/UBERON_0024479) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1364](http://purl.obolibrary.org/obo/BIRNLEX_1364) + + +### obsolete regional part of inner ear `http://purl.obolibrary.org/obo/UBERON_0024173` +#### Removed +- [obsolete regional part of inner ear](http://purl.obolibrary.org/obo/UBERON_0024173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1053" + +#### Added +- [obsolete regional part of inner ear](http://purl.obolibrary.org/obo/UBERON_0024173) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1053](http://purl.obolibrary.org/obo/BIRNLEX_1053) + + +### obsolete regional part of intermediate hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0002951` +#### Removed +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62310" + +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:767" + +#### Added +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62310](http://purl.obolibrary.org/obo/FMA_62310) + +- [obsolete regional part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002951) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_767](http://purl.obolibrary.org/obo/BIRNLEX_767) + + +### obsolete regional part of lateral amygdaloid nucleus `http://purl.obolibrary.org/obo/UBERON_0029954` +#### Removed +- [obsolete regional part of lateral amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2688" + +#### Added +- [obsolete regional part of lateral amygdaloid nucleus](http://purl.obolibrary.org/obo/UBERON_0029954) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2688](http://purl.obolibrary.org/obo/BIRNLEX_2688) + + +### obsolete regional part of lateral hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0002785` +#### Removed +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62312" + +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1687" + +#### Added +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1687](http://purl.obolibrary.org/obo/BIRNLEX_1687) + +- [obsolete regional part of lateral hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002785) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62312](http://purl.obolibrary.org/obo/FMA_62312) + + +### obsolete regional part of lateral ventricle `http://purl.obolibrary.org/obo/UBERON_0027649` +#### Removed +- [obsolete regional part of lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0027649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1270" + +#### Added +- [obsolete regional part of lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0027649) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1270](http://purl.obolibrary.org/obo/BIRNLEX_1270) + + +### obsolete regional part of limbic lobe `http://purl.obolibrary.org/obo/UBERON_0023789` +#### Removed +- [obsolete regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0023789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:947" + +#### Added +- [obsolete regional part of limbic lobe](http://purl.obolibrary.org/obo/UBERON_0023789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_947](http://purl.obolibrary.org/obo/BIRNLEX_947) + + +### obsolete regional part of longitudinal fissure `http://purl.obolibrary.org/obo/UBERON_0025128` +#### Removed +- [obsolete regional part of longitudinal fissure](http://purl.obolibrary.org/obo/UBERON_0025128) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4046" + +#### Added +- [obsolete regional part of longitudinal fissure](http://purl.obolibrary.org/obo/UBERON_0025128) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4046](http://purl.obolibrary.org/obo/BIRNLEX_4046) + + +### obsolete regional part of lumbar spinal cord `http://purl.obolibrary.org/obo/UBERON_0023074` +#### Removed +- [obsolete regional part of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0023074) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1602" + +#### Added +- [obsolete regional part of lumbar spinal cord](http://purl.obolibrary.org/obo/UBERON_0023074) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1602](http://purl.obolibrary.org/obo/BIRNLEX_1602) + + +### obsolete regional part of lumbar spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0034667` +#### Removed +- [obsolete regional part of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0034667) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:791" + +#### Added +- [obsolete regional part of lumbar spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0034667) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_791](http://purl.obolibrary.org/obo/BIRNLEX_791) + + +### obsolete regional part of lumbar spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0028010` +#### Removed +- [obsolete regional part of lumbar spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0028010) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1631" + +#### Added +- [obsolete regional part of lumbar spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0028010) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1631](http://purl.obolibrary.org/obo/BIRNLEX_1631) + + +### obsolete regional part of lumbar spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0024762` +#### Removed +- [obsolete regional part of lumbar spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1647" + +#### Added +- [obsolete regional part of lumbar spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024762) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1647](http://purl.obolibrary.org/obo/BIRNLEX_1647) + + +### obsolete regional part of macula `http://purl.obolibrary.org/obo/UBERON_0026564` +#### Removed +- [obsolete regional part of macula](http://purl.obolibrary.org/obo/UBERON_0026564) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2541" + +#### Added +- [obsolete regional part of macula](http://purl.obolibrary.org/obo/UBERON_0026564) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2541](http://purl.obolibrary.org/obo/BIRNLEX_2541) + + +### obsolete regional part of medial mammillary nucleus `http://purl.obolibrary.org/obo/UBERON_0022778` +#### Removed +- [obsolete regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0022778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1306" + +#### Added +- [obsolete regional part of medial mammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0022778) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1306](http://purl.obolibrary.org/obo/BIRNLEX_1306) + + +### obsolete regional part of median eminence `http://purl.obolibrary.org/obo/UBERON_0026001` +#### Removed +- [obsolete regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0026001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1254" + +#### Added +- [obsolete regional part of median eminence](http://purl.obolibrary.org/obo/UBERON_0026001) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1254](http://purl.obolibrary.org/obo/BIRNLEX_1254) + + +### obsolete regional part of medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0002678` +#### Removed +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71011" + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1355" + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119241003" + +#### Added +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71011](http://purl.obolibrary.org/obo/FMA_71011) + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1355](http://purl.obolibrary.org/obo/BIRNLEX_1355) + +- [obsolete regional part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0002678) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119241003](http://purl.obolibrary.org/obo/SCTID_119241003) + + +### obsolete regional part of medullary raphe nuclear complex `http://purl.obolibrary.org/obo/UBERON_0002677` +#### Removed +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1349" + +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:83951" + +#### Added +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_83951](http://purl.obolibrary.org/obo/FMA_83951) + +- [obsolete regional part of medullary raphe nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002677) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1349](http://purl.obolibrary.org/obo/BIRNLEX_1349) + + +### obsolete regional part of medullary reticular formation `http://purl.obolibrary.org/obo/UBERON_0002579` +#### Removed +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1060" + +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:73730" + +#### Added +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1060](http://purl.obolibrary.org/obo/BIRNLEX_1060) + +- [obsolete regional part of medullary reticular formation](http://purl.obolibrary.org/obo/UBERON_0002579) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_73730](http://purl.obolibrary.org/obo/FMA_73730) + + +### obsolete regional part of metencephalon `http://purl.obolibrary.org/obo/UBERON_0002680` +#### Removed +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67942" + +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1361" + +#### Added +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1361](http://purl.obolibrary.org/obo/BIRNLEX_1361) + +- [obsolete regional part of metencephalon](http://purl.obolibrary.org/obo/UBERON_0002680) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67942](http://purl.obolibrary.org/obo/FMA_67942) + + +### obsolete regional part of midbrain `http://purl.obolibrary.org/obo/UBERON_0002950` +#### Removed +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:61997" + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:763" + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119239004" + +#### Added +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_61997](http://purl.obolibrary.org/obo/FMA_61997) + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_763](http://purl.obolibrary.org/obo/BIRNLEX_763) + +- [obsolete regional part of midbrain](http://purl.obolibrary.org/obo/UBERON_0002950) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119239004](http://purl.obolibrary.org/obo/SCTID_119239004) + + +### obsolete regional part of midbrain reticular formation `http://purl.obolibrary.org/obo/UBERON_0022957` +#### Removed +- [obsolete regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0022957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1485" + +#### Added +- [obsolete regional part of midbrain reticular formation](http://purl.obolibrary.org/obo/UBERON_0022957) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1485](http://purl.obolibrary.org/obo/BIRNLEX_1485) + + +### obsolete regional part of midbrain tectum `http://purl.obolibrary.org/obo/UBERON_0002966` +#### Removed +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:795" + +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62398" + +#### Added +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62398](http://purl.obolibrary.org/obo/FMA_62398) + +- [obsolete regional part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0002966) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_795](http://purl.obolibrary.org/obo/BIRNLEX_795) + + +### obsolete regional part of midbrain tegmentum `http://purl.obolibrary.org/obo/UBERON_0002635` +#### Removed +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62399" + +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1227" + +#### Added +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62399](http://purl.obolibrary.org/obo/FMA_62399) + +- [obsolete regional part of midbrain tegmentum](http://purl.obolibrary.org/obo/UBERON_0002635) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1227](http://purl.obolibrary.org/obo/BIRNLEX_1227) + + +### obsolete regional part of middle ear `http://purl.obolibrary.org/obo/UBERON_0024826` +#### Removed +- [obsolete regional part of middle ear](http://purl.obolibrary.org/obo/UBERON_0024826) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1713" + +#### Added +- [obsolete regional part of middle ear](http://purl.obolibrary.org/obo/UBERON_0024826) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1713](http://purl.obolibrary.org/obo/BIRNLEX_1713) + + +### obsolete regional part of middle frontal gyrus `http://purl.obolibrary.org/obo/UBERON_0026063` +#### Removed +- [obsolete regional part of middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026063) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1317" + +#### Added +- [obsolete regional part of middle frontal gyrus](http://purl.obolibrary.org/obo/UBERON_0026063) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1317](http://purl.obolibrary.org/obo/BIRNLEX_1317) + + +### obsolete regional part of neostriatum `http://purl.obolibrary.org/obo/UBERON_0026113` +#### Removed +- [obsolete regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0026113) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1367" + +#### Added +- [obsolete regional part of neostriatum](http://purl.obolibrary.org/obo/UBERON_0026113) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1367](http://purl.obolibrary.org/obo/BIRNLEX_1367) + + +### obsolete regional part of neuraxis cavity `http://purl.obolibrary.org/obo/UBERON_0024518` +#### Removed +- [obsolete regional part of neuraxis cavity](http://purl.obolibrary.org/obo/UBERON_0024518) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1402" + +#### Added +- [obsolete regional part of neuraxis cavity](http://purl.obolibrary.org/obo/UBERON_0024518) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1402](http://purl.obolibrary.org/obo/BIRNLEX_1402) + + +### obsolete regional part of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0025409` +#### Removed +- [obsolete regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0025409) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:921" + +#### Added +- [obsolete regional part of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0025409) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_921](http://purl.obolibrary.org/obo/BIRNLEX_921) + + +### obsolete regional part of nose `http://purl.obolibrary.org/obo/UBERON_0023915` +#### Removed +- [obsolete regional part of nose](http://purl.obolibrary.org/obo/UBERON_0023915) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:100305" + +#### Added +- [obsolete regional part of nose](http://purl.obolibrary.org/obo/UBERON_0023915) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_100305](http://purl.obolibrary.org/obo/NLXANAT_100305) + + +### obsolete regional part of nucleus accumbens `http://purl.obolibrary.org/obo/UBERON_0024073` +#### Removed +- [obsolete regional part of nucleus accumbens](http://purl.obolibrary.org/obo/UBERON_0024073) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090305" + +#### Added +- [obsolete regional part of nucleus accumbens](http://purl.obolibrary.org/obo/UBERON_0024073) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090305](http://purl.obolibrary.org/obo/NLXANAT_20090305) + + +### obsolete regional part of occipital lobe `http://purl.obolibrary.org/obo/UBERON_0022660` +#### Removed +- [obsolete regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0022660) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1188" + +#### Added +- [obsolete regional part of occipital lobe](http://purl.obolibrary.org/obo/UBERON_0022660) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1188](http://purl.obolibrary.org/obo/BIRNLEX_1188) + + +### obsolete regional part of oculomotor nuclear complex `http://purl.obolibrary.org/obo/UBERON_0022877` +#### Removed +- [obsolete regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022877) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1405" + +#### Added +- [obsolete regional part of oculomotor nuclear complex](http://purl.obolibrary.org/obo/UBERON_0022877) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1405](http://purl.obolibrary.org/obo/BIRNLEX_1405) + + +### obsolete regional part of olfactory cortex `http://purl.obolibrary.org/obo/UBERON_0025078` +#### Removed +- [obsolete regional part of olfactory cortex](http://purl.obolibrary.org/obo/UBERON_0025078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2708" + +#### Added +- [obsolete regional part of olfactory cortex](http://purl.obolibrary.org/obo/UBERON_0025078) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2708](http://purl.obolibrary.org/obo/BIRNLEX_2708) + + +### obsolete regional part of orbital gyri complex `http://purl.obolibrary.org/obo/UBERON_0024347` +#### Removed +- [obsolete regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0024347) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1231" + +#### Added +- [obsolete regional part of orbital gyri complex](http://purl.obolibrary.org/obo/UBERON_0024347) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1231](http://purl.obolibrary.org/obo/BIRNLEX_1231) + + +### obsolete regional part of organ cavity `http://purl.obolibrary.org/obo/UBERON_0022515` +#### Removed +- [obsolete regional part of organ cavity](http://purl.obolibrary.org/obo/UBERON_0022515) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1039" + +#### Added +- [obsolete regional part of organ cavity](http://purl.obolibrary.org/obo/UBERON_0022515) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1039](http://purl.obolibrary.org/obo/BIRNLEX_1039) + + +### obsolete regional part of outer ear `http://purl.obolibrary.org/obo/UBERON_0024721` +#### Removed +- [obsolete regional part of outer ear](http://purl.obolibrary.org/obo/UBERON_0024721) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1605" + +#### Added +- [obsolete regional part of outer ear](http://purl.obolibrary.org/obo/UBERON_0024721) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1605](http://purl.obolibrary.org/obo/BIRNLEX_1605) + + +### obsolete regional part of paraventricular nucleus of hypothalamus `http://purl.obolibrary.org/obo/UBERON_0026153` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0026153) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1406" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus](http://purl.obolibrary.org/obo/UBERON_0026153) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1406](http://purl.obolibrary.org/obo/BIRNLEX_1406) + + +### obsolete regional part of paraventricular nucleus of hypothalamus descending division `http://purl.obolibrary.org/obo/UBERON_0027814` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus descending division](http://purl.obolibrary.org/obo/UBERON_0027814) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1435" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus descending division](http://purl.obolibrary.org/obo/UBERON_0027814) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1435](http://purl.obolibrary.org/obo/BIRNLEX_1435) + + +### obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division `http://purl.obolibrary.org/obo/UBERON_0027758` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division](http://purl.obolibrary.org/obo/UBERON_0027758) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1380" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division](http://purl.obolibrary.org/obo/UBERON_0027758) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1380](http://purl.obolibrary.org/obo/BIRNLEX_1380) + + +### obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part `http://purl.obolibrary.org/obo/UBERON_0029415` +#### Removed +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part](http://purl.obolibrary.org/obo/UBERON_0029415) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1403" + +#### Added +- [obsolete regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part](http://purl.obolibrary.org/obo/UBERON_0029415) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1403](http://purl.obolibrary.org/obo/BIRNLEX_1403) + + +### obsolete regional part of parietal lobe `http://purl.obolibrary.org/obo/UBERON_0022650` +#### Removed +- [obsolete regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0022650) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1177" + +#### Added +- [obsolete regional part of parietal lobe](http://purl.obolibrary.org/obo/UBERON_0022650) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1177](http://purl.obolibrary.org/obo/BIRNLEX_1177) + + +### obsolete regional part of peripheral nervous system `http://purl.obolibrary.org/obo/UBERON_0022598` +#### Removed +- [obsolete regional part of peripheral nervous system](http://purl.obolibrary.org/obo/UBERON_0022598) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1122" + +#### Added +- [obsolete regional part of peripheral nervous system](http://purl.obolibrary.org/obo/UBERON_0022598) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1122](http://purl.obolibrary.org/obo/BIRNLEX_1122) + + +### obsolete regional part of pons `http://purl.obolibrary.org/obo/UBERON_0023636` +#### Removed +- [obsolete regional part of pons](http://purl.obolibrary.org/obo/UBERON_0023636) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:771" + +#### Added +- [obsolete regional part of pons](http://purl.obolibrary.org/obo/UBERON_0023636) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_771](http://purl.obolibrary.org/obo/BIRNLEX_771) + + +### obsolete regional part of pontine reticular formation `http://purl.obolibrary.org/obo/UBERON_0025827` +#### Removed +- [obsolete regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0025827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1077" + +#### Added +- [obsolete regional part of pontine reticular formation](http://purl.obolibrary.org/obo/UBERON_0025827) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1077](http://purl.obolibrary.org/obo/BIRNLEX_1077) + + +### obsolete regional part of pontine tegmentum `http://purl.obolibrary.org/obo/UBERON_0024161` +#### Removed +- [obsolete regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0024161) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1041" + +#### Added +- [obsolete regional part of pontine tegmentum](http://purl.obolibrary.org/obo/UBERON_0024161) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1041](http://purl.obolibrary.org/obo/BIRNLEX_1041) + + +### obsolete regional part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0002789` +#### Removed +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1697" + +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62311" + +#### Added +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62311](http://purl.obolibrary.org/obo/FMA_62311) + +- [obsolete regional part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0002789) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1697](http://purl.obolibrary.org/obo/BIRNLEX_1697) + + +### obsolete regional part of posterior superior frontal sulcus `http://purl.obolibrary.org/obo/UBERON_0026720` +#### Removed +- [obsolete regional part of posterior superior frontal sulcus](http://purl.obolibrary.org/obo/UBERON_0026720) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4007" + +#### Added +- [obsolete regional part of posterior superior frontal sulcus](http://purl.obolibrary.org/obo/UBERON_0026720) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4007](http://purl.obolibrary.org/obo/BIRNLEX_4007) + + +### obsolete regional part of pretectal region `http://purl.obolibrary.org/obo/UBERON_0003047` +#### Removed +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:993" + +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:74519" + +#### Added +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_74519](http://purl.obolibrary.org/obo/FMA_74519) + +- [obsolete regional part of pretectal region](http://purl.obolibrary.org/obo/UBERON_0003047) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_993](http://purl.obolibrary.org/obo/BIRNLEX_993) + + +### obsolete regional part of red nucleus `http://purl.obolibrary.org/obo/UBERON_0022890` +#### Removed +- [obsolete regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0022890) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1418" + +#### Added +- [obsolete regional part of red nucleus](http://purl.obolibrary.org/obo/UBERON_0022890) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1418](http://purl.obolibrary.org/obo/BIRNLEX_1418) + + +### obsolete regional part of retina `http://purl.obolibrary.org/obo/UBERON_0024904` +#### Removed +- [obsolete regional part of retina](http://purl.obolibrary.org/obo/UBERON_0024904) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1793" + +#### Added +- [obsolete regional part of retina](http://purl.obolibrary.org/obo/UBERON_0024904) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1793](http://purl.obolibrary.org/obo/BIRNLEX_1793) + + +### obsolete regional part of sacral spinal cord `http://purl.obolibrary.org/obo/UBERON_0022756` +#### Removed +- [obsolete regional part of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0022756) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1284" + +#### Added +- [obsolete regional part of sacral spinal cord](http://purl.obolibrary.org/obo/UBERON_0022756) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1284](http://purl.obolibrary.org/obo/BIRNLEX_1284) + + +### obsolete regional part of sacral spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0027874` +#### Removed +- [obsolete regional part of sacral spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0027874) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1495" + +#### Added +- [obsolete regional part of sacral spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0027874) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1495](http://purl.obolibrary.org/obo/BIRNLEX_1495) + + +### obsolete regional part of sacral spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0024621` +#### Removed +- [obsolete regional part of sacral spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1506" + +#### Added +- [obsolete regional part of sacral spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0024621) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1506](http://purl.obolibrary.org/obo/BIRNLEX_1506) + + +### obsolete regional part of septal nuclear complex `http://purl.obolibrary.org/obo/UBERON_0023687` +#### Removed +- [obsolete regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:825" + +#### Added +- [obsolete regional part of septal nuclear complex](http://purl.obolibrary.org/obo/UBERON_0023687) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_825](http://purl.obolibrary.org/obo/BIRNLEX_825) + + +### obsolete regional part of septum `http://purl.obolibrary.org/obo/UBERON_0023163` +#### Removed +- [obsolete regional part of septum](http://purl.obolibrary.org/obo/UBERON_0023163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1693" + +#### Added +- [obsolete regional part of septum](http://purl.obolibrary.org/obo/UBERON_0023163) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1693](http://purl.obolibrary.org/obo/BIRNLEX_1693) + + +### obsolete regional part of solitary nucleus `http://purl.obolibrary.org/obo/UBERON_0022543` +#### Removed +- [obsolete regional part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0022543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1068" + +#### Added +- [obsolete regional part of solitary nucleus](http://purl.obolibrary.org/obo/UBERON_0022543) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1068](http://purl.obolibrary.org/obo/BIRNLEX_1068) + + +### obsolete regional part of spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0023399` +#### Removed +- [obsolete regional part of spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0023399) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2671" + +#### Added +- [obsolete regional part of spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0023399) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2671](http://purl.obolibrary.org/obo/BIRNLEX_2671) + + +### obsolete regional part of spinal cord gray commissure `http://purl.obolibrary.org/obo/UBERON_0023401` +#### Removed +- [obsolete regional part of spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0023401) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2675" + +#### Added +- [obsolete regional part of spinal cord gray commissure](http://purl.obolibrary.org/obo/UBERON_0023401) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2675](http://purl.obolibrary.org/obo/BIRNLEX_2675) + + +### obsolete regional part of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0024065` +#### Removed +- [obsolete regional part of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0024065) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090206" + +#### Added +- [obsolete regional part of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0024065) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090206](http://purl.obolibrary.org/obo/NLXANAT_20090206) + + +### obsolete regional part of spiral organ of Corti `http://purl.obolibrary.org/obo/UBERON_0028192` +#### Removed +- [obsolete regional part of spiral organ of Corti](http://purl.obolibrary.org/obo/UBERON_0028192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2530" + +#### Added +- [obsolete regional part of spiral organ of Corti](http://purl.obolibrary.org/obo/UBERON_0028192) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2530](http://purl.obolibrary.org/obo/BIRNLEX_2530) + + +### obsolete regional part of stratum lacunosum moleculare `http://purl.obolibrary.org/obo/UBERON_0023560` +#### Removed +- [obsolete regional part of stratum lacunosum moleculare](http://purl.obolibrary.org/obo/UBERON_0023560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4122" + +#### Added +- [obsolete regional part of stratum lacunosum moleculare](http://purl.obolibrary.org/obo/UBERON_0023560) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4122](http://purl.obolibrary.org/obo/BIRNLEX_4122) + + +### obsolete regional part of stratum lucidum `http://purl.obolibrary.org/obo/UBERON_0024081` +#### Removed +- [obsolete regional part of stratum lucidum](http://purl.obolibrary.org/obo/UBERON_0024081) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090401" + +#### Added +- [obsolete regional part of stratum lucidum](http://purl.obolibrary.org/obo/UBERON_0024081) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090401](http://purl.obolibrary.org/obo/NLXANAT_20090401) + + +### obsolete regional part of stratum oriens `http://purl.obolibrary.org/obo/UBERON_0023552` +#### Removed +- [obsolete regional part of stratum oriens](http://purl.obolibrary.org/obo/UBERON_0023552) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4114" + +#### Added +- [obsolete regional part of stratum oriens](http://purl.obolibrary.org/obo/UBERON_0023552) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4114](http://purl.obolibrary.org/obo/BIRNLEX_4114) + + +### obsolete regional part of stratum pyramidale hippocampi `http://purl.obolibrary.org/obo/UBERON_0023547` +#### Removed +- [obsolete regional part of stratum pyramidale hippocampi](http://purl.obolibrary.org/obo/UBERON_0023547) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4109" + +#### Added +- [obsolete regional part of stratum pyramidale hippocampi](http://purl.obolibrary.org/obo/UBERON_0023547) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4109](http://purl.obolibrary.org/obo/BIRNLEX_4109) + + +### obsolete regional part of stratum radiatum `http://purl.obolibrary.org/obo/UBERON_0023556` +#### Removed +- [obsolete regional part of stratum radiatum](http://purl.obolibrary.org/obo/UBERON_0023556) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4118" + +#### Added +- [obsolete regional part of stratum radiatum](http://purl.obolibrary.org/obo/UBERON_0023556) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4118](http://purl.obolibrary.org/obo/BIRNLEX_4118) + + +### obsolete regional part of substantia nigra `http://purl.obolibrary.org/obo/UBERON_0025284` +#### Removed +- [obsolete regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0025284) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:775" + +#### Added +- [obsolete regional part of substantia nigra](http://purl.obolibrary.org/obo/UBERON_0025284) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_775](http://purl.obolibrary.org/obo/BIRNLEX_775) + + +### obsolete regional part of substantia nigra pars reticulata `http://purl.obolibrary.org/obo/UBERON_0028725` +#### Removed +- [obsolete regional part of substantia nigra pars reticulata](http://purl.obolibrary.org/obo/UBERON_0028725) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:978" + +#### Added +- [obsolete regional part of substantia nigra pars reticulata](http://purl.obolibrary.org/obo/UBERON_0028725) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_978](http://purl.obolibrary.org/obo/BIRNLEX_978) + + +### obsolete regional part of superior colliculus `http://purl.obolibrary.org/obo/UBERON_0002554` +#### Removed +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1014" + +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:85592" + +#### Added +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1014](http://purl.obolibrary.org/obo/BIRNLEX_1014) + +- [obsolete regional part of superior colliculus](http://purl.obolibrary.org/obo/UBERON_0002554) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_85592](http://purl.obolibrary.org/obo/FMA_85592) + + +### obsolete regional part of superior olivary complex `http://purl.obolibrary.org/obo/UBERON_0025828` +#### Removed +- [obsolete regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0025828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1078" + +#### Added +- [obsolete regional part of superior olivary complex](http://purl.obolibrary.org/obo/UBERON_0025828) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1078](http://purl.obolibrary.org/obo/BIRNLEX_1078) + + +### obsolete regional part of superior olive `http://purl.obolibrary.org/obo/UBERON_0027760` +#### Removed +- [obsolete regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0027760) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1382" + +#### Added +- [obsolete regional part of superior olive](http://purl.obolibrary.org/obo/UBERON_0027760) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1382](http://purl.obolibrary.org/obo/BIRNLEX_1382) + + +### obsolete regional part of superior temporal sulcus `http://purl.obolibrary.org/obo/UBERON_0026986` +#### Removed +- [obsolete regional part of superior temporal sulcus](http://purl.obolibrary.org/obo/UBERON_0026986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:856" + +#### Added +- [obsolete regional part of superior temporal sulcus](http://purl.obolibrary.org/obo/UBERON_0026986) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_856](http://purl.obolibrary.org/obo/BIRNLEX_856) + + +### obsolete regional part of suprachiasmatic nucleus `http://purl.obolibrary.org/obo/UBERON_0026079` +#### Removed +- [obsolete regional part of suprachiasmatic nucleus](http://purl.obolibrary.org/obo/UBERON_0026079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1333" + +#### Added +- [obsolete regional part of suprachiasmatic nucleus](http://purl.obolibrary.org/obo/UBERON_0026079) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1333](http://purl.obolibrary.org/obo/BIRNLEX_1333) + + +### obsolete regional part of supraoptic nucleus `http://purl.obolibrary.org/obo/UBERON_0027352` +#### Removed +- [obsolete regional part of supraoptic nucleus](http://purl.obolibrary.org/obo/UBERON_0027352) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090309" + +#### Added +- [obsolete regional part of supraoptic nucleus](http://purl.obolibrary.org/obo/UBERON_0027352) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090309](http://purl.obolibrary.org/obo/NLXANAT_20090309) + + +### obsolete regional part of telencephalon `http://purl.obolibrary.org/obo/UBERON_0002791` +#### Removed +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:62374" + +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1700" + +#### Added +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_62374](http://purl.obolibrary.org/obo/FMA_62374) + +- [obsolete regional part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0002791) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1700](http://purl.obolibrary.org/obo/BIRNLEX_1700) + + +### obsolete regional part of temporal lobe `http://purl.obolibrary.org/obo/UBERON_0023097` +#### Removed +- [obsolete regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0023097) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1625" + +#### Added +- [obsolete regional part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0023097) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1625](http://purl.obolibrary.org/obo/BIRNLEX_1625) + + +### obsolete regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0002730` +#### Removed +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1517" + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:119406000" + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67705" + +#### Added +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67705](http://purl.obolibrary.org/obo/FMA_67705) + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_119406000](http://purl.obolibrary.org/obo/SCTID_119406000) + +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0002730) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1517](http://purl.obolibrary.org/obo/BIRNLEX_1517) + + +### obsolete regional part of thalamus `http://purl.obolibrary.org/obo/UBERON_0022988` +#### Removed +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0022988) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1517" + +#### Added +- [obsolete regional part of thalamus](http://purl.obolibrary.org/obo/UBERON_0022988) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1517](http://purl.obolibrary.org/obo/BIRNLEX_1517) + + +### obsolete regional part of thoracic spinal cord `http://purl.obolibrary.org/obo/UBERON_0023812` +#### Removed +- [obsolete regional part of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0023812) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:972" + +#### Added +- [obsolete regional part of thoracic spinal cord](http://purl.obolibrary.org/obo/UBERON_0023812) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_972](http://purl.obolibrary.org/obo/BIRNLEX_972) + + +### obsolete regional part of thoracic spinal cord dorsal horn `http://purl.obolibrary.org/obo/UBERON_0027796` +#### Removed +- [obsolete regional part of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0027796) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1417" + +#### Added +- [obsolete regional part of thoracic spinal cord dorsal horn](http://purl.obolibrary.org/obo/UBERON_0027796) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1417](http://purl.obolibrary.org/obo/BIRNLEX_1417) + + +### obsolete regional part of thoracic spinal cord gray matter `http://purl.obolibrary.org/obo/UBERON_0025473` +#### Removed +- [obsolete regional part of thoracic spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0025473) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:989" + +#### Added +- [obsolete regional part of thoracic spinal cord gray matter](http://purl.obolibrary.org/obo/UBERON_0025473) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_989](http://purl.obolibrary.org/obo/BIRNLEX_989) + + +### obsolete regional part of thoracic spinal cord white matter `http://purl.obolibrary.org/obo/UBERON_0027007` +#### Removed +- [obsolete regional part of thoracic spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0027007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:885" + +#### Added +- [obsolete regional part of thoracic spinal cord white matter](http://purl.obolibrary.org/obo/UBERON_0027007) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_885](http://purl.obolibrary.org/obo/BIRNLEX_885) + + +### obsolete regional part of tongue `http://purl.obolibrary.org/obo/UBERON_0023536` +#### Removed +- [obsolete regional part of tongue](http://purl.obolibrary.org/obo/UBERON_0023536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4098" + +#### Added +- [obsolete regional part of tongue](http://purl.obolibrary.org/obo/UBERON_0023536) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4098](http://purl.obolibrary.org/obo/BIRNLEX_4098) + + +### obsolete regional part of transverse frontopolar gyri complex `http://purl.obolibrary.org/obo/UBERON_0024381` +#### Removed +- [obsolete regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0024381) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1265" + +#### Added +- [obsolete regional part of transverse frontopolar gyri complex](http://purl.obolibrary.org/obo/UBERON_0024381) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1265](http://purl.obolibrary.org/obo/BIRNLEX_1265) + + +### obsolete regional part of transverse temporal cortex `http://purl.obolibrary.org/obo/UBERON_0026324` +#### Removed +- [obsolete regional part of transverse temporal cortex](http://purl.obolibrary.org/obo/UBERON_0026324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1578" + +#### Added +- [obsolete regional part of transverse temporal cortex](http://purl.obolibrary.org/obo/UBERON_0026324) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1578](http://purl.obolibrary.org/obo/BIRNLEX_1578) + + +### obsolete regional part of trapezoid nuclear complex `http://purl.obolibrary.org/obo/UBERON_0029861` +#### Removed +- [obsolete regional part of trapezoid nuclear complex](http://purl.obolibrary.org/obo/UBERON_0029861) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2574" + +#### Added +- [obsolete regional part of trapezoid nuclear complex](http://purl.obolibrary.org/obo/UBERON_0029861) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2574](http://purl.obolibrary.org/obo/BIRNLEX_2574) + + +### obsolete regional part of tuberomammillary nucleus `http://purl.obolibrary.org/obo/UBERON_0024397` +#### Removed +- [obsolete regional part of tuberomammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024397) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1281" + +#### Added +- [obsolete regional part of tuberomammillary nucleus](http://purl.obolibrary.org/obo/UBERON_0024397) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1281](http://purl.obolibrary.org/obo/BIRNLEX_1281) + + +### obsolete regional part of ventral cochlear nucleus `http://purl.obolibrary.org/obo/UBERON_0023317` +#### Removed +- [obsolete regional part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0023317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2570" + +#### Added +- [obsolete regional part of ventral cochlear nucleus](http://purl.obolibrary.org/obo/UBERON_0023317) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2570](http://purl.obolibrary.org/obo/BIRNLEX_2570) + + +### obsolete regional part of vestibular ganglion `http://purl.obolibrary.org/obo/UBERON_0028205` +#### Removed +- [obsolete regional part of vestibular ganglion](http://purl.obolibrary.org/obo/UBERON_0028205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:2550" + +#### Added +- [obsolete regional part of vestibular ganglion](http://purl.obolibrary.org/obo/UBERON_0028205) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_2550](http://purl.obolibrary.org/obo/BIRNLEX_2550) + + +### obsolete regional part of vestibular nuclear complex `http://purl.obolibrary.org/obo/UBERON_0002584` +#### Removed +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71267" + +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1080" + +#### Added +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71267](http://purl.obolibrary.org/obo/FMA_71267) + +- [obsolete regional part of vestibular nuclear complex](http://purl.obolibrary.org/obo/UBERON_0002584) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1080](http://purl.obolibrary.org/obo/BIRNLEX_1080) + + +### obsolete regional part orbital frontal cortex `http://purl.obolibrary.org/obo/UBERON_0024177` +#### Removed +- [obsolete regional part orbital frontal cortex](http://purl.obolibrary.org/obo/UBERON_0024177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1058" + +#### Added +- [obsolete regional part orbital frontal cortex](http://purl.obolibrary.org/obo/UBERON_0024177) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1058](http://purl.obolibrary.org/obo/BIRNLEX_1058) + + +### obsolete replacement ossification `http://purl.obolibrary.org/obo/UBERON_4000140` +#### Removed +- [obsolete replacement ossification](http://purl.obolibrary.org/obo/UBERON_4000140) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0036075" + +#### Added +- [obsolete replacement ossification](http://purl.obolibrary.org/obo/UBERON_4000140) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0036075](http://purl.obolibrary.org/obo/GO_0036075) + + +### obsolete reproductive gland `http://purl.obolibrary.org/obo/UBERON_0005300` +#### Removed +- [obsolete reproductive gland](http://purl.obolibrary.org/obo/UBERON_0005300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0003937" + +#### Added +- [obsolete reproductive gland](http://purl.obolibrary.org/obo/UBERON_0005300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) + + +### obsolete retrorubral area `http://purl.obolibrary.org/obo/UBERON_0006122` +#### Removed +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:20090301" + +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:66581" + +#### Added +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_66581](http://purl.obolibrary.org/obo/FMA_66581) + +- [obsolete retrorubral area](http://purl.obolibrary.org/obo/UBERON_0006122) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_20090301](http://purl.obolibrary.org/obo/NLXANAT_20090301) + + +### obsolete rexed lamina xi `http://purl.obolibrary.org/obo/UBERON_0016593` +#### Removed +- [obsolete rexed lamina xi](http://purl.obolibrary.org/obo/UBERON_0016593) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:68872" + +#### Added +- [obsolete rexed lamina xi](http://purl.obolibrary.org/obo/UBERON_0016593) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_68872](http://purl.obolibrary.org/obo/FMA_68872) + + +### obsolete rexed lamina xii `http://purl.obolibrary.org/obo/UBERON_0016594` +#### Removed +- [obsolete rexed lamina xii](http://purl.obolibrary.org/obo/UBERON_0016594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:68873" + +#### Added +- [obsolete rexed lamina xii](http://purl.obolibrary.org/obo/UBERON_0016594) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_68873](http://purl.obolibrary.org/obo/FMA_68873) + + +### obsolete rhinencephalon `http://purl.obolibrary.org/obo/UBERON_0008981` +#### Removed +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0002785" + +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:361576004" + +#### Added +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_361576004](http://purl.obolibrary.org/obo/SCTID_361576004) + +- [obsolete rhinencephalon](http://purl.obolibrary.org/obo/UBERON_0008981) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0002785](http://purl.obolibrary.org/obo/BTO_0002785) + + +### obsolete right side of organism `http://purl.obolibrary.org/obo/UBERON_0004532` +#### Removed +- [obsolete right side of organism](http://purl.obolibrary.org/obo/UBERON_0004532) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BSPO:0000007" + +#### Added +- [obsolete right side of organism](http://purl.obolibrary.org/obo/UBERON_0004532) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BSPO_0000007](http://purl.obolibrary.org/obo/BSPO_0000007) + + +### obsolete rootlet `http://purl.obolibrary.org/obo/UBERON_0000364` +#### Removed +- [obsolete rootlet](http://purl.obolibrary.org/obo/UBERON_0000364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:76787" + +#### Added +- [obsolete rootlet](http://purl.obolibrary.org/obo/UBERON_0000364) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_76787](http://purl.obolibrary.org/obo/FMA_76787) + + +### obsolete round ligament `http://purl.obolibrary.org/obo/UBERON_0010504` +#### Removed +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C12319" + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006588" + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0006589" + +#### Added +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C12319](http://purl.obolibrary.org/obo/NCIT_C12319) + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [round ligament of liver](http://purl.obolibrary.org/obo/UBERON_0006588) + +- [obsolete round ligament](http://purl.obolibrary.org/obo/UBERON_0010504) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [round ligament of uterus](http://purl.obolibrary.org/obo/UBERON_0006589) + + +### obsolete scapular area `http://purl.obolibrary.org/obo/UBERON_3000935` +#### Removed +- [obsolete scapular area](http://purl.obolibrary.org/obo/UBERON_3000935) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006849" + +#### Added +- [obsolete scapular area](http://purl.obolibrary.org/obo/UBERON_3000935) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [scapula](http://purl.obolibrary.org/obo/UBERON_0006849) + + +### obsolete sclera `http://purl.obolibrary.org/obo/UBERON_2002289` +#### Removed +- [obsolete sclera](http://purl.obolibrary.org/obo/UBERON_2002289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001773" + +#### Added +- [obsolete sclera](http://purl.obolibrary.org/obo/UBERON_2002289) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sclera](http://purl.obolibrary.org/obo/UBERON_0001773) + + +### obsolete sclerite `http://purl.obolibrary.org/obo/UBERON_0003148` +#### Removed +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000909" + +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004475" + +#### Added +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004475](http://purl.obolibrary.org/obo/FBbt_00004475) + +- [obsolete sclerite](http://purl.obolibrary.org/obo/UBERON_0003148) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000909](http://purl.obolibrary.org/obo/HAO_0000909) + + +### obsolete scutoscutellar suture `http://purl.obolibrary.org/obo/UBERON_0003181` +#### Removed +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004601" + +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000920" + +#### Added +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004601](http://purl.obolibrary.org/obo/FBbt_00004601) + +- [obsolete scutoscutellar suture](http://purl.obolibrary.org/obo/UBERON_0003181) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000920](http://purl.obolibrary.org/obo/HAO_0000920) + + +### obsolete second polar body `http://purl.obolibrary.org/obo/UBERON_0005474` +#### Removed +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001820" + +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:18651" + +#### Added +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001820](http://purl.obolibrary.org/obo/EHDAA2_0001820) + +- [obsolete second polar body](http://purl.obolibrary.org/obo/UBERON_0005474) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_18651](http://purl.obolibrary.org/obo/FMA_18651) + + +### obsolete secondary oogonium `http://purl.obolibrary.org/obo/UBERON_3010299` +#### Removed +- [obsolete secondary oogonium](http://purl.obolibrary.org/obo/UBERON_3010299) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000655" + +#### Added +- [obsolete secondary oogonium](http://purl.obolibrary.org/obo/UBERON_3010299) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000655](http://purl.obolibrary.org/obo/CL_0000655) + + +### obsolete secondary spermatogonium `http://purl.obolibrary.org/obo/UBERON_3010300` +#### Removed +- [obsolete secondary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000657" + +#### Added +- [obsolete secondary spermatogonium](http://purl.obolibrary.org/obo/UBERON_3010300) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000657](http://purl.obolibrary.org/obo/CL_0000657) + + +### obsolete segment of white matter of spinal cord `http://purl.obolibrary.org/obo/UBERON_0006080` +#### Removed +- [obsolete segment of white matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0006080) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:258174" + +#### Added +- [obsolete segment of white matter of spinal cord](http://purl.obolibrary.org/obo/UBERON_0006080) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_258174](http://purl.obolibrary.org/obo/FMA_258174) + + +### obsolete sensory receptors `http://purl.obolibrary.org/obo/UBERON_3010612` +#### Removed +- [obsolete sensory receptors](http://purl.obolibrary.org/obo/UBERON_3010612) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012451" + +#### Added +- [obsolete sensory receptors](http://purl.obolibrary.org/obo/UBERON_3010612) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sensory receptor](http://purl.obolibrary.org/obo/UBERON_0012451) + + +### obsolete sesamoid `http://purl.obolibrary.org/obo/UBERON_3010629` +#### Removed +- [obsolete sesamoid](http://purl.obolibrary.org/obo/UBERON_3010629) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001479" + +#### Added +- [obsolete sesamoid](http://purl.obolibrary.org/obo/UBERON_3010629) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sesamoid bone](http://purl.obolibrary.org/obo/UBERON_0001479) + + +### obsolete set of arachnoid trabecula `http://purl.obolibrary.org/obo/UBERON_0000438` +#### Removed +- [obsolete set of arachnoid trabecula](http://purl.obolibrary.org/obo/UBERON_0000438) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77761" + +#### Added +- [obsolete set of arachnoid trabecula](http://purl.obolibrary.org/obo/UBERON_0000438) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77761](http://purl.obolibrary.org/obo/FMA_77761) + + +### obsolete set of proper plantar digital arteries `http://purl.obolibrary.org/obo/UBERON_0004551` +#### Removed +- [obsolete set of proper plantar digital arteries](http://purl.obolibrary.org/obo/UBERON_0004551) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71564" + +#### Added +- [obsolete set of proper plantar digital arteries](http://purl.obolibrary.org/obo/UBERON_0004551) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71564](http://purl.obolibrary.org/obo/FMA_71564) + + +### obsolete seta `http://purl.obolibrary.org/obo/UBERON_0010888` +#### Removed +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0004212" + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "INSECT:0000114" + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MIAA:0000152" + +#### Added +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MIAA_0000152](http://purl.obolibrary.org/obo/MIAA_0000152) + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [INSECT_0000114](http://purl.obolibrary.org/obo/INSECT_0000114) + +- [obsolete seta](http://purl.obolibrary.org/obo/UBERON_0010888) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0004212](http://purl.obolibrary.org/obo/BTO_0004212) + + +### obsolete simian fossa (macaque) `http://purl.obolibrary.org/obo/UBERON_0022431` +#### Removed +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1616" + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0694579" + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "neuronames:46" + +#### Added +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0694579](http://purl.obolibrary.org/obo/UMLS_C0694579) + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1616](http://purl.obolibrary.org/obo/BIRNLEX_1616) + +- [obsolete simian fossa (macaque)](http://purl.obolibrary.org/obo/UBERON_0022431) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [neuronames_46](http://purl.obolibrary.org/obo/neuronames_46) + + +### obsolete skeletal muscle of mesenchyme `http://purl.obolibrary.org/obo/UBERON_0003385` +#### Removed +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:19144" + +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:19107" + +#### Added +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_19107](http://purl.obolibrary.org/obo/EMAPA_19107) + +- [obsolete skeletal muscle of mesenchyme](http://purl.obolibrary.org/obo/UBERON_0003385) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_19144](http://purl.obolibrary.org/obo/EMAPA_19144) + + +### obsolete skeletal muscle tissue of tongue `http://purl.obolibrary.org/obo/UBERON_0003273` +#### Removed +- [obsolete skeletal muscle tissue of tongue](http://purl.obolibrary.org/obo/UBERON_0003273) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000378" + +#### Added +- [obsolete skeletal muscle tissue of tongue](http://purl.obolibrary.org/obo/UBERON_0003273) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tongue muscle](http://purl.obolibrary.org/obo/UBERON_0000378) + + +### obsolete skeletogenic cell `http://purl.obolibrary.org/obo/UBERON_4000012` +#### Removed +- [obsolete skeletogenic cell](http://purl.obolibrary.org/obo/UBERON_4000012) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0007001" + +#### Added +- [obsolete skeletogenic cell](http://purl.obolibrary.org/obo/UBERON_4000012) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0007001](http://purl.obolibrary.org/obo/CL_0007001) + + +### obsolete skeleton of embryo `http://purl.obolibrary.org/obo/UBERON_0003276` +#### Removed +- [obsolete skeleton of embryo](http://purl.obolibrary.org/obo/UBERON_0003276) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0004288" + +#### Added +- [obsolete skeleton of embryo](http://purl.obolibrary.org/obo/UBERON_0003276) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [skeleton](http://purl.obolibrary.org/obo/UBERON_0004288) + + +### obsolete somite border `http://purl.obolibrary.org/obo/UBERON_2001462` +#### Removed +- [obsolete somite border](http://purl.obolibrary.org/obo/UBERON_2001462) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0015178" + +#### Added +- [obsolete somite border](http://purl.obolibrary.org/obo/UBERON_2001462) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [somite border](http://purl.obolibrary.org/obo/UBERON_0015178) + + +### obsolete somitomere `http://purl.obolibrary.org/obo/UBERON_0005727` +#### Removed +- [obsolete somitomere](http://purl.obolibrary.org/obo/UBERON_0005727) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009617" + +#### Added +- [obsolete somitomere](http://purl.obolibrary.org/obo/UBERON_0005727) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [head paraxial mesoderm](http://purl.obolibrary.org/obo/UBERON_0009617) + + +### obsolete spermatid `http://purl.obolibrary.org/obo/UBERON_3010301` +#### Removed +- [obsolete spermatid](http://purl.obolibrary.org/obo/UBERON_3010301) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000018" + +#### Added +- [obsolete spermatid](http://purl.obolibrary.org/obo/UBERON_3010301) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000018](http://purl.obolibrary.org/obo/CL_0000018) + + +### obsolete spermatocyte `http://purl.obolibrary.org/obo/UBERON_3010256` +#### Removed +- [obsolete spermatocyte](http://purl.obolibrary.org/obo/UBERON_3010256) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000017" + +#### Added +- [obsolete spermatocyte](http://purl.obolibrary.org/obo/UBERON_3010256) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000017](http://purl.obolibrary.org/obo/CL_0000017) + + +### obsolete spermatogonia `http://purl.obolibrary.org/obo/UBERON_2001337` +#### Removed +- [obsolete spermatogonia](http://purl.obolibrary.org/obo/UBERON_2001337) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000020" + +#### Added +- [obsolete spermatogonia](http://purl.obolibrary.org/obo/UBERON_2001337) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000020](http://purl.obolibrary.org/obo/CL_0000020) + + +### obsolete spermatozoon `http://purl.obolibrary.org/obo/UBERON_3010295` +#### Removed +- [obsolete spermatozoon](http://purl.obolibrary.org/obo/UBERON_3010295) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000019" + +#### Added +- [obsolete spermatozoon](http://purl.obolibrary.org/obo/UBERON_3010295) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000019](http://purl.obolibrary.org/obo/CL_0000019) + + +### obsolete spinal cord neural fold `http://purl.obolibrary.org/obo/UBERON_0005266` +#### Removed +- [obsolete spinal cord neural fold](http://purl.obolibrary.org/obo/UBERON_0005266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "VHOG:0000628" + +#### Added +- [obsolete spinal cord neural fold](http://purl.obolibrary.org/obo/UBERON_0005266) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [VHOG_0000628](http://purl.obolibrary.org/obo/VHOG_0000628) + + +### obsolete spinal cord reticular formation `http://purl.obolibrary.org/obo/UBERON_0018534` +#### Removed +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:77455" + +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:369268003" + +#### Added +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_77455](http://purl.obolibrary.org/obo/FMA_77455) + +- [obsolete spinal cord reticular formation](http://purl.obolibrary.org/obo/UBERON_0018534) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_369268003](http://purl.obolibrary.org/obo/SCTID_369268003) + + +### obsolete spiracle `http://purl.obolibrary.org/obo/UBERON_0001006` +#### Removed +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "TGMA:0000578" + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005054" + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000950" + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010019" + +#### Added +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000950](http://purl.obolibrary.org/obo/HAO_0000950) + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005054](http://purl.obolibrary.org/obo/FBbt_00005054) + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [TGMA_0000578](http://purl.obolibrary.org/obo/TGMA_0000578) + +- [obsolete spiracle](http://purl.obolibrary.org/obo/UBERON_0001006) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [spiracle (sensu Vertebrata)](http://purl.obolibrary.org/obo/UBERON_0010019) + + +### obsolete splenius musculature `http://purl.obolibrary.org/obo/UBERON_0004484` +#### Removed +- [obsolete splenius musculature](http://purl.obolibrary.org/obo/UBERON_0004484) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:22596" + +#### Added +- [obsolete splenius musculature](http://purl.obolibrary.org/obo/UBERON_0004484) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_22596](http://purl.obolibrary.org/obo/FMA_22596) + + +### obsolete stem cell `http://purl.obolibrary.org/obo/UBERON_3010322` +#### Removed +- [obsolete stem cell](http://purl.obolibrary.org/obo/UBERON_3010322) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000034" + +#### Added +- [obsolete stem cell](http://purl.obolibrary.org/obo/UBERON_3010322) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000034](http://purl.obolibrary.org/obo/CL_0000034) + + +### obsolete sternite `http://purl.obolibrary.org/obo/UBERON_0003150` +#### Removed +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000955" + +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004477" + +#### Added +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000955](http://purl.obolibrary.org/obo/HAO_0000955) + +- [obsolete sternite](http://purl.obolibrary.org/obo/UBERON_0003150) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004477](http://purl.obolibrary.org/obo/FBbt_00004477) + + +### obsolete sternohyoid `http://purl.obolibrary.org/obo/UBERON_2000283` +#### Removed +- [obsolete sternohyoid](http://purl.obolibrary.org/obo/UBERON_2000283) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001107" + +#### Added +- [obsolete sternohyoid](http://purl.obolibrary.org/obo/UBERON_2000283) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [sternohyoid muscle](http://purl.obolibrary.org/obo/UBERON_0001107) + + +### obsolete striosomal part of tail of caudate nucleus `http://purl.obolibrary.org/obo/UBERON_0027247` +#### Removed +- [obsolete striosomal part of tail of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027247) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1010007" + +#### Added +- [obsolete striosomal part of tail of caudate nucleus](http://purl.obolibrary.org/obo/UBERON_0027247) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1010007](http://purl.obolibrary.org/obo/NLXANAT_1010007) + + +### obsolete subparabrachial nucleus `http://purl.obolibrary.org/obo/UBERON_0016849` +#### Removed +- [obsolete subparabrachial nucleus](http://purl.obolibrary.org/obo/UBERON_0016849) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002869" + +#### Added +- [obsolete subparabrachial nucleus](http://purl.obolibrary.org/obo/UBERON_0016849) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [diffuse reticular nucleus](http://purl.obolibrary.org/obo/UBERON_0002869) + + +### obsolete superficial blastomere `http://purl.obolibrary.org/obo/UBERON_2001484` +#### Removed +- [obsolete superficial blastomere](http://purl.obolibrary.org/obo/UBERON_2001484) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "ZFA:0001484" + +#### Added +- [obsolete superficial blastomere](http://purl.obolibrary.org/obo/UBERON_2001484) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ZFA_0001484](http://purl.obolibrary.org/obo/ZFA_0001484) + + +### obsolete superficial feature part of cerebral cortex `http://purl.obolibrary.org/obo/UBERON_0024182` +#### Removed +- [obsolete superficial feature part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1063" + +#### Added +- [obsolete superficial feature part of cerebral cortex](http://purl.obolibrary.org/obo/UBERON_0024182) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1063](http://purl.obolibrary.org/obo/BIRNLEX_1063) + + +### obsolete superficial feature part of cerebral peduncle `http://purl.obolibrary.org/obo/UBERON_0026106` +#### Removed +- [obsolete superficial feature part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0026106) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1360" + +#### Added +- [obsolete superficial feature part of cerebral peduncle](http://purl.obolibrary.org/obo/UBERON_0026106) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1360](http://purl.obolibrary.org/obo/BIRNLEX_1360) + + +### obsolete superficial feature part of diencephalon `http://purl.obolibrary.org/obo/UBERON_0022822` +#### Removed +- [obsolete superficial feature part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0022822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1351" + +#### Added +- [obsolete superficial feature part of diencephalon](http://purl.obolibrary.org/obo/UBERON_0022822) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1351](http://purl.obolibrary.org/obo/BIRNLEX_1351) + + +### obsolete superficial feature part of frontal lobe `http://purl.obolibrary.org/obo/UBERON_0024439` +#### Removed +- [obsolete superficial feature part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1324" + +#### Added +- [obsolete superficial feature part of frontal lobe](http://purl.obolibrary.org/obo/UBERON_0024439) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1324](http://purl.obolibrary.org/obo/BIRNLEX_1324) + + +### obsolete superficial feature part of hypophysis `http://purl.obolibrary.org/obo/UBERON_0024708` +#### Removed +- [obsolete superficial feature part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0024708) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1593" + +#### Added +- [obsolete superficial feature part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0024708) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1593](http://purl.obolibrary.org/obo/BIRNLEX_1593) + + +### obsolete superficial feature part of intermediate hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0022761` +#### Removed +- [obsolete superficial feature part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022761) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1289" + +#### Added +- [obsolete superficial feature part of intermediate hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0022761) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1289](http://purl.obolibrary.org/obo/BIRNLEX_1289) + + +### obsolete superficial feature part of medulla oblongata `http://purl.obolibrary.org/obo/UBERON_0022997` +#### Removed +- [obsolete superficial feature part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0022997) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1526" + +#### Added +- [obsolete superficial feature part of medulla oblongata](http://purl.obolibrary.org/obo/UBERON_0022997) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1526](http://purl.obolibrary.org/obo/BIRNLEX_1526) + + +### obsolete superficial feature part of midbrain tectum `http://purl.obolibrary.org/obo/UBERON_0022732` +#### Removed +- [obsolete superficial feature part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0022732) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1260" + +#### Added +- [obsolete superficial feature part of midbrain tectum](http://purl.obolibrary.org/obo/UBERON_0022732) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1260](http://purl.obolibrary.org/obo/BIRNLEX_1260) + + +### obsolete superficial feature part of parietal cortex `http://purl.obolibrary.org/obo/UBERON_0025116` +#### Removed +- [obsolete superficial feature part of parietal cortex](http://purl.obolibrary.org/obo/UBERON_0025116) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:4034" + +#### Added +- [obsolete superficial feature part of parietal cortex](http://purl.obolibrary.org/obo/UBERON_0025116) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_4034](http://purl.obolibrary.org/obo/BIRNLEX_4034) + + +### obsolete superficial feature part of pons `http://purl.obolibrary.org/obo/UBERON_0022740` +#### Removed +- [obsolete superficial feature part of pons](http://purl.obolibrary.org/obo/UBERON_0022740) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1268" + +#### Added +- [obsolete superficial feature part of pons](http://purl.obolibrary.org/obo/UBERON_0022740) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1268](http://purl.obolibrary.org/obo/BIRNLEX_1268) + + +### obsolete superficial feature part of posterior hypothalamic region `http://purl.obolibrary.org/obo/UBERON_0023013` +#### Removed +- [obsolete superficial feature part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023013) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1542" + +#### Added +- [obsolete superficial feature part of posterior hypothalamic region](http://purl.obolibrary.org/obo/UBERON_0023013) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1542](http://purl.obolibrary.org/obo/BIRNLEX_1542) + + +### obsolete superficial feature part of telencephalon `http://purl.obolibrary.org/obo/UBERON_0023695` +#### Removed +- [obsolete superficial feature part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0023695) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:833" + +#### Added +- [obsolete superficial feature part of telencephalon](http://purl.obolibrary.org/obo/UBERON_0023695) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_833](http://purl.obolibrary.org/obo/BIRNLEX_833) + + +### obsolete superficial feature part of temporal lobe `http://purl.obolibrary.org/obo/UBERON_0024653` +#### Removed +- [obsolete superficial feature part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024653) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BIRNLEX:1538" + +#### Added +- [obsolete superficial feature part of temporal lobe](http://purl.obolibrary.org/obo/UBERON_0024653) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BIRNLEX_1538](http://purl.obolibrary.org/obo/BIRNLEX_1538) + + +### obsolete supporting cell `http://purl.obolibrary.org/obo/UBERON_3010160` +#### Removed +- [obsolete supporting cell](http://purl.obolibrary.org/obo/UBERON_3010160) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000853" + +#### Added +- [obsolete supporting cell](http://purl.obolibrary.org/obo/UBERON_3010160) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000853](http://purl.obolibrary.org/obo/CL_0000853) + + +### obsolete supporting connective tissue `http://purl.obolibrary.org/obo/UBERON_0006809` +#### Removed +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0000571" + +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:37374" + +#### Added +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0000571](http://purl.obolibrary.org/obo/AAO_0000571) + +- [obsolete supporting connective tissue](http://purl.obolibrary.org/obo/UBERON_0006809) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_37374](http://purl.obolibrary.org/obo/FMA_37374) + + +### obsolete supra-acetabular expansion `http://purl.obolibrary.org/obo/UBERON_3000868` +#### Removed +- [obsolete supra-acetabular expansion](http://purl.obolibrary.org/obo/UBERON_3000868) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4200125" + +#### Added +- [obsolete supra-acetabular expansion](http://purl.obolibrary.org/obo/UBERON_3000868) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [supraacetabular crest](http://purl.obolibrary.org/obo/UBERON_4200125) + + +### obsolete supraangular `http://purl.obolibrary.org/obo/UBERON_3000587` +#### Removed +- [obsolete supraangular](http://purl.obolibrary.org/obo/UBERON_3000587) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011636" + +#### Added +- [obsolete supraangular](http://purl.obolibrary.org/obo/UBERON_3000587) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [surangular bone](http://purl.obolibrary.org/obo/UBERON_0011636) + + +### obsolete supracoracoid nerve foramen `http://purl.obolibrary.org/obo/UBERON_0018363` +#### Removed +- [obsolete supracoracoid nerve foramen](http://purl.obolibrary.org/obo/UBERON_0018363) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:3000778" + +#### Added +- [obsolete supracoracoid nerve foramen](http://purl.obolibrary.org/obo/UBERON_0018363) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [supracoracoid foramen](http://purl.obolibrary.org/obo/UBERON_3000778) + + +### obsolete supraoccipital `http://purl.obolibrary.org/obo/UBERON_3000588` +#### Removed +- [obsolete supraoccipital](http://purl.obolibrary.org/obo/UBERON_3000588) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0004747" + +#### Added +- [obsolete supraoccipital](http://purl.obolibrary.org/obo/UBERON_3000588) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [supraoccipital bone](http://purl.obolibrary.org/obo/UBERON_0004747) + + +### obsolete surface sense organ `http://purl.obolibrary.org/obo/UBERON_0007540` +#### Removed +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0003173" + +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AEO:0000173" + +#### Added +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0003173](http://purl.obolibrary.org/obo/EHDAA2_0003173) + +- [obsolete surface sense organ](http://purl.obolibrary.org/obo/UBERON_0007540) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AEO_0000173](http://purl.obolibrary.org/obo/AEO_0000173) + + +### obsolete synapse `http://purl.obolibrary.org/obo/UBERON_0035344` +#### Removed +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67408" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0039062" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:362298009" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13281" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "GO:0045202" + +#### Added +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_362298009](http://purl.obolibrary.org/obo/SCTID_362298009) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [GO_0045202](http://purl.obolibrary.org/obo/GO_0045202) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0039062](http://purl.obolibrary.org/obo/UMLS_C0039062) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13281](http://purl.obolibrary.org/obo/NCIT_C13281) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0035344) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67408](http://purl.obolibrary.org/obo/FMA_67408) + + +### obsolete synapse `http://purl.obolibrary.org/obo/UBERON_0001025` +#### Removed +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GAID:766" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0045202" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao914572699" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:362298009" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C13281" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67408" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UMLS:C0039062" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MESH:A08.850" + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005114" + +#### Added +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_362298009](http://purl.obolibrary.org/obo/SCTID_362298009) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MESH_A08.850](http://purl.obolibrary.org/obo/MESH_A08.850) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005114](http://purl.obolibrary.org/obo/FBbt_00005114) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [UMLS_C0039062](http://purl.obolibrary.org/obo/UMLS_C0039062) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67408](http://purl.obolibrary.org/obo/FMA_67408) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao914572699](http://purl.obolibrary.org/obo/NIF_Subcellular_sao914572699) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GAID_766](http://purl.obolibrary.org/obo/GAID_766) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0045202](http://purl.obolibrary.org/obo/GO_0045202) + +- [obsolete synapse](http://purl.obolibrary.org/obo/UBERON_0001025) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C13281](http://purl.obolibrary.org/obo/NCIT_C13281) + + +### obsolete synaptic ribbon `http://purl.obolibrary.org/obo/UBERON_0001030` +#### Removed +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:67107" + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NIF_Subcellular:sao1884931180" + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0048788" + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005143" + +#### Added +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005143](http://purl.obolibrary.org/obo/FBbt_00005143) + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_67107](http://purl.obolibrary.org/obo/FMA_67107) + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NIF_Subcellular_sao1884931180](http://purl.obolibrary.org/obo/NIF_Subcellular_sao1884931180) + +- [obsolete synaptic ribbon](http://purl.obolibrary.org/obo/UBERON_0001030) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0048788](http://purl.obolibrary.org/obo/GO_0048788) + + +### obsolete tagma `http://purl.obolibrary.org/obo/UBERON_0003136` +#### Removed +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000002" + +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000988" + +#### Added +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000988](http://purl.obolibrary.org/obo/HAO_0000988) + +- [obsolete tagma](http://purl.obolibrary.org/obo/UBERON_0003136) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000002](http://purl.obolibrary.org/obo/FBbt_00000002) + + +### obsolete tailbud stage `http://purl.obolibrary.org/obo/UBERON_0009741` +#### Removed +- [obsolete tailbud stage](http://purl.obolibrary.org/obo/UBERON_0009741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:1000007" + +#### Added +- [obsolete tailbud stage](http://purl.obolibrary.org/obo/UBERON_0009741) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_1000007](http://purl.obolibrary.org/obo/XAO_1000007) + + +### obsolete tegula `http://purl.obolibrary.org/obo/UBERON_0003191` +#### Removed +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000993" + +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004730" + +#### Added +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004730](http://purl.obolibrary.org/obo/FBbt_00004730) + +- [obsolete tegula](http://purl.obolibrary.org/obo/UBERON_0003191) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000993](http://purl.obolibrary.org/obo/HAO_0000993) + + +### obsolete telencephalic tracts `http://purl.obolibrary.org/obo/UBERON_2000597` +#### Removed +- [obsolete telencephalic tracts](http://purl.obolibrary.org/obo/UBERON_2000597) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011299" + +#### Added +- [obsolete telencephalic tracts](http://purl.obolibrary.org/obo/UBERON_2000597) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [white matter of telencephalon](http://purl.obolibrary.org/obo/UBERON_0011299) + + +### obsolete telencephalon lateral ventricle `http://purl.obolibrary.org/obo/UBERON_0005683` +#### Removed +- [obsolete telencephalon lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0005683) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EHDAA2:0001984" + +#### Added +- [obsolete telencephalon lateral ventricle](http://purl.obolibrary.org/obo/UBERON_0005683) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EHDAA2_0001984](http://purl.obolibrary.org/obo/EHDAA2_0001984) + + +### obsolete telencephalon of primate `http://purl.obolibrary.org/obo/UBERON_0023935` +#### Removed +- [obsolete telencephalon of primate](http://purl.obolibrary.org/obo/UBERON_0023935) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005012" + +#### Added +- [obsolete telencephalon of primate](http://purl.obolibrary.org/obo/UBERON_0023935) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005012](http://purl.obolibrary.org/obo/NLXANAT_1005012) + + +### obsolete telencephalon of rodent `http://purl.obolibrary.org/obo/UBERON_0023938` +#### Removed +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001893" + +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NLXANAT:1005015" + +#### Added +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [telencephalon](http://purl.obolibrary.org/obo/UBERON_0001893) + +- [obsolete telencephalon of rodent](http://purl.obolibrary.org/obo/UBERON_0023938) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NLXANAT_1005015](http://purl.obolibrary.org/obo/NLXANAT_1005015) + + +### obsolete tentorial pit `http://purl.obolibrary.org/obo/UBERON_0003158` +#### Removed +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004501" + +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0000999" + +#### Added +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0000999](http://purl.obolibrary.org/obo/HAO_0000999) + +- [obsolete tentorial pit](http://purl.obolibrary.org/obo/UBERON_0003158) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004501](http://purl.obolibrary.org/obo/FBbt_00004501) + + +### obsolete tergite `http://purl.obolibrary.org/obo/UBERON_0003149` +#### Removed +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001005" + +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004476" + +#### Added +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001005](http://purl.obolibrary.org/obo/HAO_0001005) + +- [obsolete tergite](http://purl.obolibrary.org/obo/UBERON_0003149) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004476](http://purl.obolibrary.org/obo/FBbt_00004476) + + +### obsolete tergum `http://purl.obolibrary.org/obo/UBERON_0003170` +#### Removed +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001006" + +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004552" + +#### Added +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004552](http://purl.obolibrary.org/obo/FBbt_00004552) + +- [obsolete tergum](http://purl.obolibrary.org/obo/UBERON_0003170) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001006](http://purl.obolibrary.org/obo/HAO_0001006) + + +### obsolete terminally differentiated odontoblast `http://purl.obolibrary.org/obo/UBERON_4000096` +#### Removed +- [obsolete terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000096) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:00007013" + +#### Added +- [obsolete terminally differentiated odontoblast](http://purl.obolibrary.org/obo/UBERON_4000096) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_00007013](http://purl.obolibrary.org/obo/CL_00007013) + + +### obsolete terminally differentiated osteoblast `http://purl.obolibrary.org/obo/UBERON_4000116` +#### Removed +- [obsolete terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000116) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0001039" + +#### Added +- [obsolete terminally differentiated osteoblast](http://purl.obolibrary.org/obo/UBERON_4000116) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0001039](http://purl.obolibrary.org/obo/CL_0001039) + + +### obsolete thoracic segment `http://purl.obolibrary.org/obo/UBERON_0003138` +#### Removed +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001013" + +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000016" + +#### Added +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000016](http://purl.obolibrary.org/obo/FBbt_00000016) + +- [obsolete thoracic segment](http://purl.obolibrary.org/obo/UBERON_0003138) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001013](http://purl.obolibrary.org/obo/HAO_0001013) + + +### obsolete thymocyte `http://purl.obolibrary.org/obo/UBERON_3010312` +#### Removed +- [obsolete thymocyte](http://purl.obolibrary.org/obo/UBERON_3010312) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000893" + +#### Added +- [obsolete thymocyte](http://purl.obolibrary.org/obo/UBERON_3010312) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000893](http://purl.obolibrary.org/obo/CL_0000893) + + +### obsolete thymus subunit `http://purl.obolibrary.org/obo/UBERON_0035075` +#### Removed +- [obsolete thymus subunit](http://purl.obolibrary.org/obo/UBERON_0035075) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005483" + +#### Added +- [obsolete thymus subunit](http://purl.obolibrary.org/obo/UBERON_0035075) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [thymus lobe](http://purl.obolibrary.org/obo/UBERON_0005483) + + +### obsolete tip of digit `http://purl.obolibrary.org/obo/UBERON_7500041` +#### Removed +- [obsolete tip of digit](http://purl.obolibrary.org/obo/UBERON_7500041) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0009551" + +#### Added +- [obsolete tip of digit](http://purl.obolibrary.org/obo/UBERON_7500041) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [distal segment of digit](http://purl.obolibrary.org/obo/UBERON_0009551) + + +### obsolete tip of nail `http://purl.obolibrary.org/obo/UBERON_7500040` +#### Removed +- [obsolete tip of nail](http://purl.obolibrary.org/obo/UBERON_7500040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001705" + +#### Added +- [obsolete tip of nail](http://purl.obolibrary.org/obo/UBERON_7500040) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [nail](http://purl.obolibrary.org/obo/UBERON_0001705) + + +### obsolete tip of tail `http://purl.obolibrary.org/obo/UBERON_7500035` +#### Removed +- [obsolete tip of tail](http://purl.obolibrary.org/obo/UBERON_7500035) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0010162" + +#### Added +- [obsolete tip of tail](http://purl.obolibrary.org/obo/UBERON_7500035) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [post-anal tail tip](http://purl.obolibrary.org/obo/UBERON_0010162) + + +### obsolete tongue musculature `http://purl.obolibrary.org/obo/UBERON_0004477` +#### Removed +- [obsolete tongue musculature](http://purl.obolibrary.org/obo/UBERON_0004477) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:71289" + +#### Added +- [obsolete tongue musculature](http://purl.obolibrary.org/obo/UBERON_0004477) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_71289](http://purl.obolibrary.org/obo/FMA_71289) + + +### obsolete tonsillar lymph node `http://purl.obolibrary.org/obo/UBERON_0015919` +#### Removed +- [obsolete tonsillar lymph node](http://purl.obolibrary.org/obo/UBERON_0015919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "SCTID:261419004" + +#### Added +- [obsolete tonsillar lymph node](http://purl.obolibrary.org/obo/UBERON_0015919) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [SCTID_261419004](http://purl.obolibrary.org/obo/SCTID_261419004) + + +### obsolete trabecular plate `http://purl.obolibrary.org/obo/UBERON_3010137` +#### Removed +- [obsolete trabecular plate](http://purl.obolibrary.org/obo/UBERON_3010137) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011242" + +#### Added +- [obsolete trabecular plate](http://purl.obolibrary.org/obo/UBERON_3010137) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ethmoid cartilage](http://purl.obolibrary.org/obo/UBERON_0011242) + + +### obsolete transitional epithelium `http://purl.obolibrary.org/obo/UBERON_0005910` +#### Removed +- [obsolete transitional epithelium](http://purl.obolibrary.org/obo/UBERON_0005910) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0000365" + +#### Added +- [obsolete transitional epithelium](http://purl.obolibrary.org/obo/UBERON_0005910) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [urothelium](http://purl.obolibrary.org/obo/UBERON_0000365) + + +### obsolete trochlea of femur `http://purl.obolibrary.org/obo/UBERON_7500077` +#### Removed +- [obsolete trochlea of femur](http://purl.obolibrary.org/obo/UBERON_7500077) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:4200096" + +#### Added +- [obsolete trochlea of femur](http://purl.obolibrary.org/obo/UBERON_7500077) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [intercondylar fossa](http://purl.obolibrary.org/obo/UBERON_4200096) + + +### obsolete tuber `http://purl.obolibrary.org/obo/UBERON_4200132` +#### Removed +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_4200132) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005813" + +#### Added +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_4200132) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tubercle](http://purl.obolibrary.org/obo/UBERON_0005813) + + +### obsolete tuber `http://purl.obolibrary.org/obo/UBERON_0000380` +#### Removed +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:75430" + +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EFO:0001015" + +#### Added +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EFO_0001015](http://purl.obolibrary.org/obo/EFO_0001015) + +- [obsolete tuber](http://purl.obolibrary.org/obo/UBERON_0000380) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_75430](http://purl.obolibrary.org/obo/FMA_75430) + + +### obsolete tunica vasculosa plexus `http://purl.obolibrary.org/obo/UBERON_0012184` +#### Removed +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "NCIT:C33823" + +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0001284" + +#### Added +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0001284](http://purl.obolibrary.org/obo/MA_0001284) + +- [obsolete tunica vasculosa plexus](http://purl.obolibrary.org/obo/UBERON_0012184) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [NCIT_C33823](http://purl.obolibrary.org/obo/NCIT_C33823) + + +### obsolete tympanum `http://purl.obolibrary.org/obo/UBERON_3011108` +#### Removed +- [obsolete tympanum](http://purl.obolibrary.org/obo/UBERON_3011108) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0002364" + +#### Added +- [obsolete tympanum](http://purl.obolibrary.org/obo/UBERON_3011108) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [tympanic membrane](http://purl.obolibrary.org/obo/UBERON_0002364) + + +### obsolete unfertilized egg `http://purl.obolibrary.org/obo/UBERON_2001570` +#### Removed +- [obsolete unfertilized egg](http://purl.obolibrary.org/obo/UBERON_2001570) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000025" + +#### Added +- [obsolete unfertilized egg](http://purl.obolibrary.org/obo/UBERON_2001570) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000025](http://purl.obolibrary.org/obo/CL_0000025) + + +### obsolete unguitractor plate `http://purl.obolibrary.org/obo/UBERON_0003189` +#### Removed +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004658" + +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001043" + +#### Added +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004658](http://purl.obolibrary.org/obo/FBbt_00004658) + +- [obsolete unguitractor plate](http://purl.obolibrary.org/obo/UBERON_0003189) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001043](http://purl.obolibrary.org/obo/HAO_0001043) + + +### obsolete unspecified `http://purl.obolibrary.org/obo/UBERON_0006336` +#### Removed +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0003003" + +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0001093" + +#### Added +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0003003](http://purl.obolibrary.org/obo/XAO_0003003) + +- [obsolete unspecified](http://purl.obolibrary.org/obo/UBERON_0006336) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0001093](http://purl.obolibrary.org/obo/ZFA_0001093) + + +### obsolete ureter `http://purl.obolibrary.org/obo/UBERON_0001055` +#### Removed +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000056" + +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0000057" + +#### Added +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ureter](http://purl.obolibrary.org/obo/UBERON_0000056) + +- [obsolete ureter](http://purl.obolibrary.org/obo/UBERON_0001055) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [urethra](http://purl.obolibrary.org/obo/UBERON_0000057) + + +### obsolete urethra of urogenital sinus `http://purl.obolibrary.org/obo/UBERON_0003340` #### Removed -- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-03-22" +- [obsolete urethra of urogenital sinus](http://purl.obolibrary.org/obo/UBERON_0003340) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "EMAPA:30901" #### Added -- [versionInfo](http://www.w3.org/2002/07/owl#versionInfo) "2024-05-13" +- [obsolete urethra of urogenital sinus](http://purl.obolibrary.org/obo/UBERON_0003340) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [EMAPA_30901](http://purl.obolibrary.org/obo/EMAPA_30901) -### GO_0000003 `http://purl.obolibrary.org/obo/GO_0000003` +### obsolete vagal ganglion `http://purl.obolibrary.org/obo/UBERON_2007067` #### Removed -- Class: [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003) +- [obsolete vagal ganglion](http://purl.obolibrary.org/obo/UBERON_2007067) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0005362" +#### Added +- [obsolete vagal ganglion](http://purl.obolibrary.org/obo/UBERON_2007067) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [vagus X ganglion](http://purl.obolibrary.org/obo/UBERON_0005362) -### GO_0022414 `http://purl.obolibrary.org/obo/GO_0022414` +### obsolete vagal root `http://purl.obolibrary.org/obo/UBERON_2007011` +#### Removed +- [obsolete vagal root](http://purl.obolibrary.org/obo/UBERON_2007011) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011213" #### Added -- Class: [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414) +- [obsolete vagal root](http://purl.obolibrary.org/obo/UBERON_2007011) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [root of vagus nerve](http://purl.obolibrary.org/obo/UBERON_0011213) -### PR_000050567 `http://purl.obolibrary.org/obo/PR_000050567` +### obsolete vegetal hemisphere `http://purl.obolibrary.org/obo/UBERON_3010331` #### Removed -- Class: [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete vegetal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010331) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0012285" +#### Added +- [obsolete vegetal hemisphere](http://purl.obolibrary.org/obo/UBERON_3010331) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [vegetal hemisphere](http://purl.obolibrary.org/obo/UBERON_0012285) -### Reissner's fiber `http://purl.obolibrary.org/obo/UBERON_0011357` +### obsolete ventral hyoid arch `http://purl.obolibrary.org/obo/UBERON_4000018` #### Removed -- [Reissner's fiber](http://purl.obolibrary.org/obo/UBERON_0011357) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete ventral hyoid arch](http://purl.obolibrary.org/obo/UBERON_4000018) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0011153" +#### Added +- [obsolete ventral hyoid arch](http://purl.obolibrary.org/obo/UBERON_4000018) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [ventral hyoid arch skeleton](http://purl.obolibrary.org/obo/UBERON_0011153) -### adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0002196` +### obsolete ventral labial vein `http://purl.obolibrary.org/obo/UBERON_0006202` +#### Removed +- [obsolete ventral labial vein](http://purl.obolibrary.org/obo/UBERON_0006202) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "MA:0002260" #### Added -- [adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002196) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [obsolete ventral labial vein](http://purl.obolibrary.org/obo/UBERON_0006202) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [MA_0002260](http://purl.obolibrary.org/obo/MA_0002260) -### adrenal gland capsule `http://purl.obolibrary.org/obo/UBERON_0002052` +### obsolete ventral longitudinal muscle `http://purl.obolibrary.org/obo/UBERON_0000932` #### Removed -- [adrenal gland capsule](http://purl.obolibrary.org/obo/UBERON_0002052) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "WBbt:0005814" + +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000482" +#### Added +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000482](http://purl.obolibrary.org/obo/FBbt_00000482) + +- [obsolete ventral longitudinal muscle](http://purl.obolibrary.org/obo/UBERON_0000932) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [WBbt_0005814](http://purl.obolibrary.org/obo/WBbt_0005814) -### amnion `http://purl.obolibrary.org/obo/UBERON_0000305` +### obsolete ventral nucleus `http://purl.obolibrary.org/obo/UBERON_2000302` #### Removed -- [amnion](http://purl.obolibrary.org/obo/UBERON_0000305) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000302" + +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008993" + +#### Added +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000302](http://purl.obolibrary.org/obo/ZFA_0000302) +- [obsolete ventral nucleus](http://purl.obolibrary.org/obo/UBERON_2000302) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [habenular nucleus](http://purl.obolibrary.org/obo/UBERON_0008993) -### annular ligament of stapes `http://purl.obolibrary.org/obo/UBERON_0018161` +### obsolete ventral ramus of occulomotor nerve `http://purl.obolibrary.org/obo/UBERON_3010632` #### Removed -- [annular ligament of stapes](http://purl.obolibrary.org/obo/UBERON_0018161) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete ventral ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010632) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0015161" +#### Added +- [obsolete ventral ramus of occulomotor nerve](http://purl.obolibrary.org/obo/UBERON_3010632) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [inferior branch of oculomotor nerve](http://purl.obolibrary.org/obo/UBERON_0015161) -### anterior median eminence `http://purl.obolibrary.org/obo/UBERON_0002648` +### obsolete ventricle `http://purl.obolibrary.org/obo/UBERON_0002300` +#### Removed +- [obsolete ventricle](http://purl.obolibrary.org/obo/UBERON_0002300) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FMA:82553" #### Added -- [anterior median eminence](http://purl.obolibrary.org/obo/UBERON_0002648) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [obsolete ventricle](http://purl.obolibrary.org/obo/UBERON_0002300) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FMA_82553](http://purl.obolibrary.org/obo/FMA_82553) -### arachnoid trabecula `http://purl.obolibrary.org/obo/UBERON_0000439` +### obsolete vertebral `http://purl.obolibrary.org/obo/UBERON_3010224` #### Removed -- [arachnoid trabecula](http://purl.obolibrary.org/obo/UBERON_0000439) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete vertebral](http://purl.obolibrary.org/obo/UBERON_3010224) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0010913" +#### Added +- [obsolete vertebral](http://purl.obolibrary.org/obo/UBERON_3010224) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [vertebral element](http://purl.obolibrary.org/obo/UBERON_0010913) -### arterial system `http://purl.obolibrary.org/obo/UBERON_0004572` +### obsolete visceral muscle `http://purl.obolibrary.org/obo/UBERON_6005070` #### Removed -- [arterial system](http://purl.obolibrary.org/obo/UBERON_0004572) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00005070" +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "CL:0008007" +#### Added +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [CL_0008007](http://purl.obolibrary.org/obo/CL_0008007) + +- [obsolete visceral muscle](http://purl.obolibrary.org/obo/UBERON_6005070) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00005070](http://purl.obolibrary.org/obo/FBbt_00005070) -### arthropod neurohemal organ `http://purl.obolibrary.org/obo/UBERON_0001053` + +### obsolete visceral musculature `http://purl.obolibrary.org/obo/UBERON_0007094` #### Removed -- [arthropod neurohemal organ](http://purl.obolibrary.org/obo/UBERON_0001053) SubClassOf [endocrine gland](http://purl.obolibrary.org/obo/UBERON_0002368) +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BILA:0000132" + +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0001135" #### Added -- [arthropod neurohemal organ](http://purl.obolibrary.org/obo/UBERON_0001053) SubClassOf [neuroendocrine gland](http://purl.obolibrary.org/obo/UBERON_0010133) +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [smooth muscle tissue](http://purl.obolibrary.org/obo/UBERON_0001135) +- [obsolete visceral musculature](http://purl.obolibrary.org/obo/UBERON_0007094) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BILA_0000132](http://purl.obolibrary.org/obo/BILA_0000132) -### basement membrane of epithelium `http://purl.obolibrary.org/obo/UBERON_0005769` + +### obsolete viscerocranium `http://purl.obolibrary.org/obo/UBERON_0001704` #### Removed -- [basement membrane of epithelium](http://purl.obolibrary.org/obo/UBERON_0005769) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0011156" + +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0008895" + +#### Added +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [splanchnocranium](http://purl.obolibrary.org/obo/UBERON_0008895) +- [obsolete viscerocranium](http://purl.obolibrary.org/obo/UBERON_0001704) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [facial skeleton](http://purl.obolibrary.org/obo/UBERON_0011156) -### biliary system `http://purl.obolibrary.org/obo/UBERON_0002294` +### obsolete vitelline venous plexus `http://purl.obolibrary.org/obo/UBERON_0006310` #### Removed -- [biliary system](http://purl.obolibrary.org/obo/UBERON_0002294) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete vitelline venous plexus](http://purl.obolibrary.org/obo/UBERON_0006310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0006309" +#### Added +- [obsolete vitelline venous plexus](http://purl.obolibrary.org/obo/UBERON_0006310) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [venous vitelline plexus](http://purl.obolibrary.org/obo/UBERON_0006309) -### biliary tree `http://purl.obolibrary.org/obo/UBERON_0001173` +### obsolete vitreous `http://purl.obolibrary.org/obo/UBERON_2002290` #### Removed -- [biliary tree](http://purl.obolibrary.org/obo/UBERON_0001173) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete vitreous](http://purl.obolibrary.org/obo/UBERON_2002290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "UBERON:0001797" +#### Added +- [obsolete vitreous](http://purl.obolibrary.org/obo/UBERON_2002290) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [vitreous humor](http://purl.obolibrary.org/obo/UBERON_0001797) -### blood `http://purl.obolibrary.org/obo/UBERON_0000178` +### obsolete wing cell `http://purl.obolibrary.org/obo/UBERON_0003196` #### Removed -- [blood](http://purl.obolibrary.org/obo/UBERON_0000178) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00004769" + +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "HAO:0001091" + +#### Added +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [HAO_0001091](http://purl.obolibrary.org/obo/HAO_0001091) +- [obsolete wing cell](http://purl.obolibrary.org/obo/UBERON_0003196) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00004769](http://purl.obolibrary.org/obo/FBbt_00004769) -### blood clot `http://purl.obolibrary.org/obo/UBERON_0010210` +### obsolete xanthophore `http://purl.obolibrary.org/obo/UBERON_3010320` #### Removed -- [blood clot](http://purl.obolibrary.org/obo/UBERON_0010210) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete xanthophore](http://purl.obolibrary.org/obo/UBERON_3010320) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000430" +#### Added +- [obsolete xanthophore](http://purl.obolibrary.org/obo/UBERON_3010320) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000430](http://purl.obolibrary.org/obo/CL_0000430) -### blood plasma `http://purl.obolibrary.org/obo/UBERON_0001969` +### obsolete yolk `http://purl.obolibrary.org/obo/UBERON_0000918` #### Removed -- [blood plasma](http://purl.obolibrary.org/obo/UBERON_0001969) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "FBbt:00000035" +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "XAO:0000281" +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "UBERON:0007378" -### blood sinus of vibrissa `http://purl.obolibrary.org/obo/UBERON_0034941` -#### Removed -- [blood sinus of vibrissa](http://purl.obolibrary.org/obo/UBERON_0034941) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "ZFA:0000084" +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "BTO:0000371" +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "GO:0060417" -### blood vasculature `http://purl.obolibrary.org/obo/UBERON_0004537` -#### Removed -- [blood vasculature](http://purl.obolibrary.org/obo/UBERON_0004537) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [BTO_0000371](http://purl.obolibrary.org/obo/BTO_0000371) +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [XAO_0000281](http://purl.obolibrary.org/obo/XAO_0000281) +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [FBbt_00000035](http://purl.obolibrary.org/obo/FBbt_00000035) -### blood vessel `http://purl.obolibrary.org/obo/UBERON_0001981` -#### Removed -- [blood vessel](http://purl.obolibrary.org/obo/UBERON_0001981) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [egg yolk](http://purl.obolibrary.org/obo/UBERON_0007378) +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [GO_0060417](http://purl.obolibrary.org/obo/GO_0060417) +- [obsolete yolk](http://purl.obolibrary.org/obo/UBERON_0000918) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [ZFA_0000084](http://purl.obolibrary.org/obo/ZFA_0000084) -### blood vessel layer of choroid `http://purl.obolibrary.org/obo/UBERON_0013399` + +### obsolete zygote `http://purl.obolibrary.org/obo/UBERON_3010324` #### Removed -- [blood vessel layer of choroid](http://purl.obolibrary.org/obo/UBERON_0013399) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete zygote](http://purl.obolibrary.org/obo/UBERON_3010324) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) "CL:0000365" +#### Added +- [obsolete zygote](http://purl.obolibrary.org/obo/UBERON_3010324) [IAO_0100001](http://purl.obolibrary.org/obo/IAO_0100001) [CL_0000365](http://purl.obolibrary.org/obo/CL_0000365) -### capillary layer of choroid `http://purl.obolibrary.org/obo/UBERON_0005336` +### obsolete zygote cortex `http://purl.obolibrary.org/obo/UBERON_0005889` #### Removed -- [capillary layer of choroid](http://purl.obolibrary.org/obo/UBERON_0005336) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [obsolete zygote cortex](http://purl.obolibrary.org/obo/UBERON_0005889) [consider](http://www.geneontology.org/formats/oboInOwl#consider) "AAO:0010327" +#### Added +- [obsolete zygote cortex](http://purl.obolibrary.org/obo/UBERON_0005889) [consider](http://www.geneontology.org/formats/oboInOwl#consider) [AAO_0010327](http://purl.obolibrary.org/obo/AAO_0010327) -### capsule of lens `http://purl.obolibrary.org/obo/UBERON_0001804` -#### Removed -- [capsule of lens](http://purl.obolibrary.org/obo/UBERON_0001804) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### ophthalmic plexus `http://purl.obolibrary.org/obo/UBERON_0011194` +#### Added +- [ophthalmic plexus](http://purl.obolibrary.org/obo/UBERON_0011194) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [ophthalmic plexus](http://purl.obolibrary.org/obo/UBERON_0011194) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### capsule of liver `http://purl.obolibrary.org/obo/UBERON_0016479` -#### Removed -- [capsule of liver](http://purl.obolibrary.org/obo/UBERON_0016479) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### organ_slim `http://purl.obolibrary.org/obo/uberon/core#organ_slim` +#### Added +- [organ_slim](http://purl.obolibrary.org/obo/uberon/core#organ_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### capsule of parathyroid gland `http://purl.obolibrary.org/obo/UBERON_0001748` -#### Removed -- [capsule of parathyroid gland](http://purl.obolibrary.org/obo/UBERON_0001748) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### palatine tonsil `http://purl.obolibrary.org/obo/UBERON_0002373` +#### Added +- [palatine tonsil](http://purl.obolibrary.org/obo/UBERON_0002373) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### cardia of stomach `http://purl.obolibrary.org/obo/UBERON_0001162` -#### Removed -- [cardia of stomach](http://purl.obolibrary.org/obo/UBERON_0001162) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [palatine tonsil](http://purl.obolibrary.org/obo/UBERON_0002373) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### palmar branch of median nerve `http://purl.obolibrary.org/obo/UBERON_0016430` -### cardiovascular system `http://purl.obolibrary.org/obo/UBERON_0004535` -#### Removed -- [cardiovascular system](http://purl.obolibrary.org/obo/UBERON_0004535) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [palmar branch of median nerve](http://purl.obolibrary.org/obo/UBERON_0016430) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [palmar branch of median nerve](http://purl.obolibrary.org/obo/UBERON_0016430) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### cartilage of bronchus `http://purl.obolibrary.org/obo/UBERON_0001956` -#### Removed -- [cartilage of bronchus](http://purl.obolibrary.org/obo/UBERON_0001956) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### parasympathetic nerve `http://purl.obolibrary.org/obo/UBERON_0004293` +#### Added +- [parasympathetic nerve](http://purl.obolibrary.org/obo/UBERON_0004293) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [parasympathetic nerve](http://purl.obolibrary.org/obo/UBERON_0004293) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### choroid plexus stroma `http://purl.obolibrary.org/obo/UBERON_0005206` -#### Removed -- [choroid plexus stroma](http://purl.obolibrary.org/obo/UBERON_0005206) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### pelvic ganglion `http://purl.obolibrary.org/obo/UBERON_0016508` +#### Added +- [pelvic ganglion](http://purl.obolibrary.org/obo/UBERON_0016508) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### collagen and cuticulin-based cuticle `http://purl.obolibrary.org/obo/UBERON_0003049` -#### Removed -- [collagen and cuticulin-based cuticle](http://purl.obolibrary.org/obo/UBERON_0003049) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [pelvic ganglion](http://purl.obolibrary.org/obo/UBERON_0016508) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### pelvic splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018675` -### collection of collagen fibrils `http://purl.obolibrary.org/obo/UBERON_0011860` -#### Removed -- [collection of collagen fibrils](http://purl.obolibrary.org/obo/UBERON_0011860) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [pelvic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018675) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [pelvic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018675) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### colloid of thyroid follicle `http://purl.obolibrary.org/obo/UBERON_0012364` -#### Removed -- [colloid of thyroid follicle](http://purl.obolibrary.org/obo/UBERON_0012364) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### percardiacophrenic artery `http://purl.obolibrary.org/obo/UBERON_8600081` +#### Added +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" -### core of melon organ `http://purl.obolibrary.org/obo/UBERON_0013182` -#### Removed -- [core of melon organ](http://purl.obolibrary.org/obo/UBERON_0013182) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "pericardiacophrenic artery" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:3964" +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:3964" +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the internal thoracic artery and supplies the pericardium and the diaphragm." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Pericardiacophrenic_artery" -### cornea `http://purl.obolibrary.org/obo/UBERON_0000964` -#### Removed -- [cornea](http://purl.obolibrary.org/obo/UBERON_0000964) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) [label](http://www.w3.org/2000/01/rdf-schema#label) "percardiacophrenic artery" +- Class: [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [internal thoracic artery](http://purl.obolibrary.org/obo/UBERON_0002456) -### corpus luteum `http://purl.obolibrary.org/obo/UBERON_0002512` +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [diaphragm](http://purl.obolibrary.org/obo/UBERON_0001103) -#### Added -- [corpus luteum](http://purl.obolibrary.org/obo/UBERON_0002512) SubClassOf [female reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003134) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) SubClassOf [respiratory system artery](http://purl.obolibrary.org/obo/UBERON_0003469) +- [percardiacophrenic artery](http://purl.obolibrary.org/obo/UBERON_8600081) SubClassOf [thoracic segment blood vessel](http://purl.obolibrary.org/obo/UBERON_0003834) -### cortex of thymus `http://purl.obolibrary.org/obo/UBERON_0002123` -#### Removed -- [cortex of thymus](http://purl.obolibrary.org/obo/UBERON_0002123) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### pericardial artery `http://purl.obolibrary.org/obo/UBERON_8600080` +#### Added +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:69329" -### cricoid cartilage `http://purl.obolibrary.org/obo/UBERON_0002375` -#### Removed -- [cricoid cartilage](http://purl.obolibrary.org/obo/UBERON_0002375) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the descending thoracic aorta and supplies the dorsal portion of the pericardium." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Descending_thoracic_aorta" +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) [label](http://www.w3.org/2000/01/rdf-schema#label) "pericardial artery" -### dense connective tissue `http://purl.obolibrary.org/obo/UBERON_0011823` -#### Removed -- [dense connective tissue](http://purl.obolibrary.org/obo/UBERON_0011823) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- Class: [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) SubClassOf ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [diaphragm](http://purl.obolibrary.org/obo/UBERON_0001103)) and ([RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [pericardium](http://purl.obolibrary.org/obo/UBERON_0002407)) -### dermatological-muscosal system `http://purl.obolibrary.org/obo/UBERON_0012125` -#### Removed -- [dermatological-muscosal system](http://purl.obolibrary.org/obo/UBERON_0012125) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [descending thoracic aorta](http://purl.obolibrary.org/obo/UBERON_0002345) +- [pericardial artery](http://purl.obolibrary.org/obo/UBERON_8600080) SubClassOf [thoracic segment blood vessel](http://purl.obolibrary.org/obo/UBERON_0003834) -### dermis `http://purl.obolibrary.org/obo/UBERON_0002067` -#### Removed -- [dermis](http://purl.obolibrary.org/obo/UBERON_0002067) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### pheno_slim `http://purl.obolibrary.org/obo/uberon/core#pheno_slim` +#### Added +- [pheno_slim](http://purl.obolibrary.org/obo/uberon/core#pheno_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### duct `http://purl.obolibrary.org/obo/UBERON_0000058` -#### Removed -- [duct](http://purl.obolibrary.org/obo/UBERON_0000058) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### phenotype_rcn `http://purl.obolibrary.org/obo/uberon/core#phenotype_rcn` +#### Added +- [phenotype_rcn](http://purl.obolibrary.org/obo/uberon/core#phenotype_rcn) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### ductal plate `http://purl.obolibrary.org/obo/UBERON_8410003` -#### Removed -- [ductal plate](http://purl.obolibrary.org/obo/UBERON_8410003) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### placental disc `http://purl.obolibrary.org/obo/UBERON_8600038` +#### Added +- [placental disc](http://purl.obolibrary.org/obo/UBERON_8600038) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### ectocervix `http://purl.obolibrary.org/obo/UBERON_0012249` -#### Removed -- [ectocervix](http://purl.obolibrary.org/obo/UBERON_0012249) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [placental disc](http://purl.obolibrary.org/obo/UBERON_8600038) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### posterolateral artery `http://purl.obolibrary.org/obo/UBERON_8600064` -### endocervix `http://purl.obolibrary.org/obo/UBERON_0000458` -#### Removed -- [endocervix](http://purl.obolibrary.org/obo/UBERON_0000458) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) [label](http://www.w3.org/2000/01/rdf-schema#label) "posterolateral artery" +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the right coronary artery or the circumflex artery and supplies the posterior and lateral walls of the left ventricle." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.53347/rID-35642" -### epiglottis `http://purl.obolibrary.org/obo/UBERON_0000388` -#### Removed -- [epiglottis](http://purl.obolibrary.org/obo/UBERON_0000388) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- Class: [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [heart left ventricle](http://purl.obolibrary.org/obo/UBERON_0002084) -### epithelium `http://purl.obolibrary.org/obo/UBERON_0000483` -#### Removed -- [epithelium](http://purl.obolibrary.org/obo/UBERON_0000483) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [anterior internal vertebral venous plexus](http://purl.obolibrary.org/obo/UBERON_8600103) +- [posterolateral artery](http://purl.obolibrary.org/obo/UBERON_8600064) SubClassOf [thoracic segment blood vessel](http://purl.obolibrary.org/obo/UBERON_0003834) -### exocrine gland `http://purl.obolibrary.org/obo/UBERON_0002365` -#### Removed -- [exocrine gland](http://purl.obolibrary.org/obo/UBERON_0002365) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### postganglionic autonomic fiber `http://purl.obolibrary.org/obo/UBERON_0011924` +#### Added +- [postganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011924) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### exocrine system `http://purl.obolibrary.org/obo/UBERON_0002330` -#### Removed -- [exocrine system](http://purl.obolibrary.org/obo/UBERON_0002330) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [postganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011924) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### postganglionic parasympathetic fiber `http://purl.obolibrary.org/obo/UBERON_0011929` -### external soft tissue zone `http://purl.obolibrary.org/obo/UBERON_0034929` -#### Removed -- [external soft tissue zone](http://purl.obolibrary.org/obo/UBERON_0034929) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [postganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011929) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [postganglionic parasympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011929) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### feather bud `http://purl.obolibrary.org/obo/UBERON_0011802` -#### Removed -- [feather bud](http://purl.obolibrary.org/obo/UBERON_0011802) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### postganglionic sympathetic fiber `http://purl.obolibrary.org/obo/UBERON_0011926` +#### Added +- [postganglionic sympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011926) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [postganglionic sympathetic fiber](http://purl.obolibrary.org/obo/UBERON_0011926) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### fibrocartilage `http://purl.obolibrary.org/obo/UBERON_0001995` -#### Removed -- [fibrocartilage](http://purl.obolibrary.org/obo/UBERON_0001995) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### preferred term in the context of comparative anatomy `http://purl.obolibrary.org/obo/uberon/core#COMPARATIVE_PREFERRED` +#### Added +- [preferred term in the context of comparative anatomy](http://purl.obolibrary.org/obo/uberon/core#COMPARATIVE_PREFERRED) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) -### fibrocartilage enthesis `http://purl.obolibrary.org/obo/UBERON_0035847` -#### Removed -- [fibrocartilage enthesis](http://purl.obolibrary.org/obo/UBERON_0035847) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### preferred term when talking about an instance of this class in Homo sapiens `http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED` +#### Added +- [preferred term when talking about an instance of this class in Homo sapiens](http://purl.obolibrary.org/obo/uberon/core#HUMAN_PREFERRED) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) -### fibrous enthesis `http://purl.obolibrary.org/obo/UBERON_0035846` -#### Removed -- [fibrous enthesis](http://purl.obolibrary.org/obo/UBERON_0035846) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### preganglionic autonomic fiber `http://purl.obolibrary.org/obo/UBERON_0011925` +#### Added +- [preganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011925) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### fibrous membrane of synovial tendon sheath `http://purl.obolibrary.org/obo/UBERON_0011234` -#### Removed -- [fibrous membrane of synovial tendon sheath](http://purl.obolibrary.org/obo/UBERON_0011234) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [preganglionic autonomic fiber](http://purl.obolibrary.org/obo/UBERON_0011925) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +### prostatic venule `http://purl.obolibrary.org/obo/UBERON_8600084` -### fundus of stomach `http://purl.obolibrary.org/obo/UBERON_0001160` -#### Removed -- [fundus of stomach](http://purl.obolibrary.org/obo/UBERON_0001160) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A venule that is tributary of the prostatic venous plexus and drains blood from the prostate gland." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://www.kenhub.com/en/library/anatomy/prostatic-venous-plexus" +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### gizzard `http://purl.obolibrary.org/obo/UBERON_0005052` -#### Removed -- [gizzard](http://purl.obolibrary.org/obo/UBERON_0005052) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) [label](http://www.w3.org/2000/01/rdf-schema#label) "prostatic venule" +- Class: [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) SubClassOf [venule](http://purl.obolibrary.org/obo/UBERON_0001979) -### glabella region `http://purl.obolibrary.org/obo/UBERON_0034766` -#### Removed -- [glabella region](http://purl.obolibrary.org/obo/UBERON_0034766) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [prostate gland](http://purl.obolibrary.org/obo/UBERON_0002367) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [prostatic venous plexus](http://purl.obolibrary.org/obo/UBERON_0009042) -### gonad `http://purl.obolibrary.org/obo/UBERON_0000991` -#### Removed -- [gonad](http://purl.obolibrary.org/obo/UBERON_0000991) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FBbt:00004858" - - [mapping_justification](https://w3id.org/sssom/mapping_justification) [ManualMappingCuration](https://w3id.org/semapv/vocab/ManualMappingCuration) +- [prostatic venule](http://purl.obolibrary.org/obo/UBERON_8600084) SubClassOf [pelvis blood vessel](http://purl.obolibrary.org/obo/UBERON_0003520) +### pulmonary arteriole `http://purl.obolibrary.org/obo/UBERON_8600077` -### hepatobiliary system `http://purl.obolibrary.org/obo/UBERON_0002423` -#### Removed -- [hepatobiliary system](http://purl.obolibrary.org/obo/UBERON_0002423) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:279896" +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "set of all pulmonary arterioles" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:279896" +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An arteriole that branches from the pulmonary arteries and supplies deoxygenated blood to the pulmonary capillaries and alveolar capillaries of the lungs." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://radiologykey.com/6-pulmonary-artery-and-vein/" -### hump `http://purl.obolibrary.org/obo/UBERON_0013657` -#### Removed -- [hump](http://purl.obolibrary.org/obo/UBERON_0013657) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) [label](http://www.w3.org/2000/01/rdf-schema#label) "pulmonary arteriole" -### hyaline cartilage tissue `http://purl.obolibrary.org/obo/UBERON_0001994` -#### Removed -- [hyaline cartilage tissue](http://purl.obolibrary.org/obo/UBERON_0001994) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- Class: [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) SubClassOf [respiratory system artery](http://purl.obolibrary.org/obo/UBERON_0003469) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) -### hypodermis `http://purl.obolibrary.org/obo/UBERON_0002072` -#### Removed -- [hypodermis](http://purl.obolibrary.org/obo/UBERON_0002072) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) SubClassOf [secondary pulmonary lobule](http://purl.obolibrary.org/obo/UBERON_0010369) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [pulmonary capillary](http://purl.obolibrary.org/obo/UBERON_0016405) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) SubClassOf [lung blood vessel](http://purl.obolibrary.org/obo/UBERON_0003512) -### infundibular organ `http://purl.obolibrary.org/obo/UBERON_0011358` -#### Removed -- [infundibular organ](http://purl.obolibrary.org/obo/UBERON_0011358) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [pulmonary arteriole](http://purl.obolibrary.org/obo/UBERON_8600077) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [secondary pulmonary lobule](http://purl.obolibrary.org/obo/UBERON_0010369) +### radial vein `http://purl.obolibrary.org/obo/UBERON_8600092` -### inner cambium layer of periosteum `http://purl.obolibrary.org/obo/UBERON_0000312` -#### Removed -- [inner cambium layer of periosteum](http://purl.obolibrary.org/obo/UBERON_0000312) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) [label](http://www.w3.org/2000/01/rdf-schema#label) "radial vein" -### integument `http://purl.obolibrary.org/obo/UBERON_0002199` -#### Removed -- [integument](http://purl.obolibrary.org/obo/UBERON_0002199) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the brachial vein and drains blood from the lateral structures of the forearm, carpal and metacarpal bones, joints of the hand, and lateral forearm muscles." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Radial_veins" +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:22947" +- Class: [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) -### integumental system `http://purl.obolibrary.org/obo/UBERON_0002416` -#### Removed -- [integumental system](http://purl.obolibrary.org/obo/UBERON_0002416) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) SubClassOf [arm blood vessel](http://purl.obolibrary.org/obo/UBERON_0003507) +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) SubClassOf ([RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [forelimb zeugopod](http://purl.obolibrary.org/obo/UBERON_0002386)) and ([RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [manus](http://purl.obolibrary.org/obo/UBERON_0002398)) -### intermediate part of hypophysis `http://purl.obolibrary.org/obo/UBERON_0023752` +- [radial vein](http://purl.obolibrary.org/obo/UBERON_8600092) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [brachial vein](http://purl.obolibrary.org/obo/UBERON_0001413) -#### Added -- [intermediate part of hypophysis](http://purl.obolibrary.org/obo/UBERON_0023752) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +### recurrent laryngeal nerve `http://purl.obolibrary.org/obo/UBERON_0003716` -### intervertebral disk `http://purl.obolibrary.org/obo/UBERON_0001066` -#### Removed -- [intervertebral disk](http://purl.obolibrary.org/obo/UBERON_0001066) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [recurrent laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0003716) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [recurrent laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0003716) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### intestinal villus `http://purl.obolibrary.org/obo/UBERON_0001213` -#### Removed -- [intestinal villus](http://purl.obolibrary.org/obo/UBERON_0001213) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### root of cranial nerve `http://purl.obolibrary.org/obo/UBERON_0006843` +#### Added +- [root of cranial nerve](http://purl.obolibrary.org/obo/UBERON_0006843) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9299" -### juxtaglomerular apparatus `http://purl.obolibrary.org/obo/UBERON_0002303` -#### Removed -- [juxtaglomerular apparatus](http://purl.obolibrary.org/obo/UBERON_0002303) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### root of vagus nerve `http://purl.obolibrary.org/obo/UBERON_0011213` +#### Added +- [root of vagus nerve](http://purl.obolibrary.org/obo/UBERON_0011213) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9337" -### lamina of omasum `http://purl.obolibrary.org/obo/UBERON_0014510` -#### Removed -- [lamina of omasum](http://purl.obolibrary.org/obo/UBERON_0014510) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### sacral nerve `http://purl.obolibrary.org/obo/UBERON_0009625` +#### Added +- [sacral nerve](http://purl.obolibrary.org/obo/UBERON_0009625) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [sacral nerve](http://purl.obolibrary.org/obo/UBERON_0009625) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### lateral eminence of hypophysis `http://purl.obolibrary.org/obo/UBERON_0027109` +### saphenous nerve `http://purl.obolibrary.org/obo/UBERON_0002475` #### Added -- [lateral eminence of hypophysis](http://purl.obolibrary.org/obo/UBERON_0027109) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [saphenous nerve](http://purl.obolibrary.org/obo/UBERON_0002475) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [saphenous nerve](http://purl.obolibrary.org/obo/UBERON_0002475) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### lymph node `http://purl.obolibrary.org/obo/UBERON_0000029` -#### Removed -- [lymph node](http://purl.obolibrary.org/obo/UBERON_0000029) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### segmental pulmonary vein `http://purl.obolibrary.org/obo/UBERON_8600051` +#### Added +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:9411" -### lymphocyte domain `http://purl.obolibrary.org/obo/UBERON_0010394` -#### Removed -- [lymphocyte domain](http://purl.obolibrary.org/obo/UBERON_0010394) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the main pulmonary veins and drains oxygenated blood from a segment of the lung." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://radiologykey.com/6-pulmonary-artery-and-vein/" +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" -### lymphoid tissue `http://purl.obolibrary.org/obo/UBERON_0001744` -#### Removed -- [lymphoid tissue](http://purl.obolibrary.org/obo/UBERON_0001744) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) [label](http://www.w3.org/2000/01/rdf-schema#label) "segmental pulmonary vein" +- Class: [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [bronchopulmonary segment](http://purl.obolibrary.org/obo/UBERON_8600017) -### male bulbospongiosus muscle `http://purl.obolibrary.org/obo/UBERON_0011388` -#### Removed -- [male bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011388) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [male reproductive system](http://purl.obolibrary.org/obo/UBERON_0000079) +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) SubClassOf [lung blood vessel](http://purl.obolibrary.org/obo/UBERON_0003512) -- [male bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011388) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [pulmonary vein](http://purl.obolibrary.org/obo/UBERON_0002016) -#### Added -- [male bulbospongiosus muscle](http://purl.obolibrary.org/obo/UBERON_0011388) SubClassOf [male reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003135) +- [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) SubClassOf [thoracic vein](http://purl.obolibrary.org/obo/UBERON_0005194) -### median eminence of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0002197` +### septal perforating artery `http://purl.obolibrary.org/obo/UBERON_8600063` #### Added -- [median eminence of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002197) SubClassOf [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### median pars intermedia `http://purl.obolibrary.org/obo/UBERON_3010541` +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) [label](http://www.w3.org/2000/01/rdf-schema#label) "septal perforating artery" -#### Added -- [median pars intermedia](http://purl.obolibrary.org/obo/UBERON_3010541) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the left anterior descending artery and supplies the interventricular septum of the heart." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "DOI:10.1067/mtc.2001.113604" +- Class: [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) -### melon organ `http://purl.obolibrary.org/obo/UBERON_0008960` -#### Removed -- [melon organ](http://purl.obolibrary.org/obo/UBERON_0008960) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) SubClassOf [thoracic segment blood vessel](http://purl.obolibrary.org/obo/UBERON_0003834) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [left anterior descending artery](http://purl.obolibrary.org/obo/UBERON_8600102) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) -### membrane organ `http://purl.obolibrary.org/obo/UBERON_0000094` -#### Removed -- [membrane organ](http://purl.obolibrary.org/obo/UBERON_0000094) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [septal perforating artery](http://purl.obolibrary.org/obo/UBERON_8600063) SubClassOf [RO_0020101](http://purl.obolibrary.org/obo/RO_0020101) some [interventricular septum](http://purl.obolibrary.org/obo/UBERON_0002094) +### short ciliary nerve `http://purl.obolibrary.org/obo/UBERON_0022302` -### meningeal cluster `http://purl.obolibrary.org/obo/UBERON_0010743` -#### Removed -- [meningeal cluster](http://purl.obolibrary.org/obo/UBERON_0010743) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [short ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022302) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [short ciliary nerve](http://purl.obolibrary.org/obo/UBERON_0022302) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### meniscus `http://purl.obolibrary.org/obo/UBERON_0000387` -#### Removed -- [meniscus](http://purl.obolibrary.org/obo/UBERON_0000387) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### short descending thin limb `http://purl.obolibrary.org/obo/UBERON_0005099` +#### Added +- [short descending thin limb](http://purl.obolibrary.org/obo/UBERON_0005099) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [short descending thin limb](http://purl.obolibrary.org/obo/UBERON_0005099) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### milk `http://purl.obolibrary.org/obo/UBERON_0001913` -#### Removed -- [milk](http://purl.obolibrary.org/obo/UBERON_0001913) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### spinal nerve plexus `http://purl.obolibrary.org/obo/UBERON_0001813` +#### Added +- [spinal nerve plexus](http://purl.obolibrary.org/obo/UBERON_0001813) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### mucosa `http://purl.obolibrary.org/obo/UBERON_0000344` -#### Removed -- [mucosa](http://purl.obolibrary.org/obo/UBERON_0000344) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [spinal nerve plexus](http://purl.obolibrary.org/obo/UBERON_0001813) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### spinal nerve root `http://purl.obolibrary.org/obo/UBERON_0009623` -### navicular fossa of spongiose part of urethra `http://purl.obolibrary.org/obo/UBERON_0012294` -#### Removed -- [navicular fossa of spongiose part of urethra](http://purl.obolibrary.org/obo/UBERON_0012294) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [spinal nerve root](http://purl.obolibrary.org/obo/UBERON_0009623) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [spinal nerve root](http://purl.obolibrary.org/obo/UBERON_0009623) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### neural lobe of neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0003217` +### spinal nerve trunk `http://purl.obolibrary.org/obo/UBERON_0005476` #### Added -- [neural lobe of neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0003217) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [spinal nerve trunk](http://purl.obolibrary.org/obo/UBERON_0005476) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [spinal nerve trunk](http://purl.obolibrary.org/obo/UBERON_0005476) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### neurohypophysis `http://purl.obolibrary.org/obo/UBERON_0002198` -#### Added -- [neurohypophysis](http://purl.obolibrary.org/obo/UBERON_0002198) SubClassOf [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) +### splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0003715` +#### Added +- [splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0003715) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### nucleus pulposus `http://purl.obolibrary.org/obo/UBERON_0002242` -#### Removed -- [nucleus pulposus](http://purl.obolibrary.org/obo/UBERON_0002242) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0003715) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +### sublingual vein `http://purl.obolibrary.org/obo/UBERON_8600071` -### open tracheal system trachea `http://purl.obolibrary.org/obo/UBERON_0003127` -#### Removed -- [open tracheal system trachea](http://purl.obolibrary.org/obo/UBERON_0003127) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the lingual vein and drains blood from the ventral (inferior) surface of the tongue and the sublingual glands." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Sublingual_vein" +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) [label](http://www.w3.org/2000/01/rdf-schema#label) "sublingual vein" +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### outer fibrous layer of periosteum `http://purl.obolibrary.org/obo/UBERON_0009858` -#### Removed -- [outer fibrous layer of periosteum](http://purl.obolibrary.org/obo/UBERON_0009858) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:50836" +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- Class: [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) -### pair of dorsal aortae `http://purl.obolibrary.org/obo/UBERON_0010190` -#### Removed -- [pair of dorsal aortae](http://purl.obolibrary.org/obo/UBERON_0010190) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [sublingual gland](http://purl.obolibrary.org/obo/UBERON_0001832) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -### paired limb/fin `http://purl.obolibrary.org/obo/UBERON_0004708` -#### Removed -- [paired limb/fin](http://purl.obolibrary.org/obo/UBERON_0004708) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) +- [sublingual vein](http://purl.obolibrary.org/obo/UBERON_8600071) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [lingual vein](http://purl.obolibrary.org/obo/UBERON_0006634) -### pancreatic lobule `http://purl.obolibrary.org/obo/UBERON_0007324` -#### Removed -- [pancreatic lobule](http://purl.obolibrary.org/obo/UBERON_0007324) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### submental artery `http://purl.obolibrary.org/obo/UBERON_8600096` +#### Added +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:49561" -### papillary layer of dermis `http://purl.obolibrary.org/obo/UBERON_0001992` -#### Removed -- [papillary layer of dermis](http://purl.obolibrary.org/obo/UBERON_0001992) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the facial artery that runs forward under the mouth, then turns upward upon reaching the chin." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Submental_artery" +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) [label](http://www.w3.org/2000/01/rdf-schema#label) "submental artery" +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" -### parenchyma of thyroid gland `http://purl.obolibrary.org/obo/UBERON_0001747` -#### Removed -- [parenchyma of thyroid gland](http://purl.obolibrary.org/obo/UBERON_0001747) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- Class: [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [facial artery](http://purl.obolibrary.org/obo/UBERON_0001612) -### pars distalis of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0006964` +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -#### Added -- [pars distalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0006964) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [submental artery](http://purl.obolibrary.org/obo/UBERON_8600096) SubClassOf [artery](http://purl.obolibrary.org/obo/UBERON_0001637) -### pars intermedia of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0002432` +### submucous nerve plexus of colon `http://purl.obolibrary.org/obo/UBERON_8410059` #### Added -- [pars intermedia of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002432) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [submucous nerve plexus of colon](http://purl.obolibrary.org/obo/UBERON_8410059) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [submucous nerve plexus of colon](http://purl.obolibrary.org/obo/UBERON_8410059) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### pars tuberalis of adenohypophysis `http://purl.obolibrary.org/obo/UBERON_0002433` +### suboccipital venous plexus `http://purl.obolibrary.org/obo/UBERON_8600076` #### Added -- [pars tuberalis of adenohypophysis](http://purl.obolibrary.org/obo/UBERON_0002433) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A venous plexus that is tributary of the deep cervical veins and drains blood from the suboccipital region." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1227/01.neu.0000303217.53607.d9" +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) [label](http://www.w3.org/2000/01/rdf-schema#label) "suboccipital venous plexus" -### pericardium `http://purl.obolibrary.org/obo/UBERON_0002407` -#### Removed -- [pericardium](http://purl.obolibrary.org/obo/UBERON_0002407) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:50803" -### periorbital region `http://purl.obolibrary.org/obo/UBERON_0004090` -#### Removed -- [periorbital region](http://purl.obolibrary.org/obo/UBERON_0004090) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- Class: [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) SubClassOf [vasculature of central nervous system](http://purl.obolibrary.org/obo/UBERON_0036303) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) SubClassOf [vasculature of organ](http://purl.obolibrary.org/obo/UBERON_0006876) -### periosteum `http://purl.obolibrary.org/obo/UBERON_0002515` -#### Removed -- [periosteum](http://purl.obolibrary.org/obo/UBERON_0002515) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [deep cervical vein](http://purl.obolibrary.org/obo/UBERON_8600059) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) SubClassOf [venous plexus](http://purl.obolibrary.org/obo/UBERON_0001593) +- [suboccipital venous plexus](http://purl.obolibrary.org/obo/UBERON_8600076) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [spinal cord](http://purl.obolibrary.org/obo/UBERON_0002240) -### pharyngotympanic tube `http://purl.obolibrary.org/obo/UBERON_0002393` -#### Removed -- [pharyngotympanic tube](http://purl.obolibrary.org/obo/UBERON_0002393) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### subsegmental pulmonary artery `http://purl.obolibrary.org/obo/UBERON_8600060` +#### Added +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) [label](http://www.w3.org/2000/01/rdf-schema#label) "subsegmental pulmonary artery" -### pilosebaceous unit `http://purl.obolibrary.org/obo/UBERON_0011932` -#### Removed -- [pilosebaceous unit](http://purl.obolibrary.org/obo/UBERON_0011932) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that is a branch of the segmental pulmonary artery and supplies deoxyge blood to a smaller subsegment of the lung." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:30057869" +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### pituitary gland `http://purl.obolibrary.org/obo/UBERON_0000007` +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:9311" -#### Added -- [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) SubClassOf [reproductive gland](http://purl.obolibrary.org/obo/UBERON_0003937) +- Class: [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) + +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) SubClassOf [respiratory system artery](http://purl.obolibrary.org/obo/UBERON_0003469) -- [pituitary gland](http://purl.obolibrary.org/obo/UBERON_0000007) SubClassOf [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) SubClassOf [lung blood vessel](http://purl.obolibrary.org/obo/UBERON_0003512) +- [subsegmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_8600060) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [segmental pulmonary artery](http://purl.obolibrary.org/obo/UBERON_0039262) -### pituitary stalk `http://purl.obolibrary.org/obo/UBERON_0002434` + +### subsegmental pulmonary vein `http://purl.obolibrary.org/obo/UBERON_8600052` #### Added -- [pituitary stalk](http://purl.obolibrary.org/obo/UBERON_0002434) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) [label](http://www.w3.org/2000/01/rdf-schema#label) "subsegmental pulmonary vein" +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the segmental pulmonary veins and drains oxygenated blood from a subsegment of the lung." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://radiologykey.com/6-pulmonary-artery-and-vein/" -### portal triad `http://purl.obolibrary.org/obo/UBERON_0001279` -#### Removed -- [portal triad](http://purl.obolibrary.org/obo/UBERON_0001279) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:9413" +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" -### posterior incudal ligament `http://purl.obolibrary.org/obo/UBERON_0018155` -#### Removed -- [posterior incudal ligament](http://purl.obolibrary.org/obo/UBERON_0018155) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- Class: [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) SubClassOf [thoracic vein](http://purl.obolibrary.org/obo/UBERON_0005194) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [bronchopulmonary segment](http://purl.obolibrary.org/obo/UBERON_8600017) -### posterior median eminence `http://purl.obolibrary.org/obo/UBERON_0002652` +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) SubClassOf [lung blood vessel](http://purl.obolibrary.org/obo/UBERON_0003512) -#### Added -- [posterior median eminence](http://purl.obolibrary.org/obo/UBERON_0002652) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [subsegmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600052) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [segmental pulmonary vein](http://purl.obolibrary.org/obo/UBERON_8600051) -### pulmonary lymphatic vessel `http://purl.obolibrary.org/obo/UBERON_0018227` -#### Removed -- [pulmonary lymphatic vessel](http://purl.obolibrary.org/obo/UBERON_0018227) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### superficial iliac circumflex vein `http://purl.obolibrary.org/obo/UBERON_8600082` + +#### Added +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "superficial circumflex iliac vein" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:44319" +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:44319" +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the great saphenous vein and drains blood from the inguinal region and the anterior abdominal wall." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Great_saphenous_vein" -### pulmonary part of lymphatic system `http://purl.obolibrary.org/obo/UBERON_0018226` -#### Removed -- [pulmonary part of lymphatic system](http://purl.obolibrary.org/obo/UBERON_0018226) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) [label](http://www.w3.org/2000/01/rdf-schema#label) "superficial iliac circumflex vein" -### pulmonary vascular system `http://purl.obolibrary.org/obo/UBERON_0008886` -#### Removed -- [pulmonary vascular system](http://purl.obolibrary.org/obo/UBERON_0008886) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- Class: [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [great saphenous vein](http://purl.obolibrary.org/obo/UBERON_0001363) +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) -### pylorus `http://purl.obolibrary.org/obo/UBERON_0001166` -#### Removed -- [pylorus](http://purl.obolibrary.org/obo/UBERON_0001166) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [superficial iliac circumflex vein](http://purl.obolibrary.org/obo/UBERON_8600082) SubClassOf [hindlimb blood vessel](http://purl.obolibrary.org/obo/UBERON_0003516) +### superior hypogastric nerve plexus `http://purl.obolibrary.org/obo/UBERON_0002013` -### red pulp of spleen `http://purl.obolibrary.org/obo/UBERON_0001250` -#### Removed -- [red pulp of spleen](http://purl.obolibrary.org/obo/UBERON_0001250) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [superior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002013) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [superior hypogastric nerve plexus](http://purl.obolibrary.org/obo/UBERON_0002013) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### regular connective tissue `http://purl.obolibrary.org/obo/UBERON_0007845` -#### Removed -- [regular connective tissue](http://purl.obolibrary.org/obo/UBERON_0007845) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### superior laryngeal nerve `http://purl.obolibrary.org/obo/UBERON_0011326` + +#### Added +- [superior laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0011326) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [superior laryngeal nerve](http://purl.obolibrary.org/obo/UBERON_0011326) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### remnant of Rathke's pouch `http://purl.obolibrary.org/obo/UBERON_0006377` -#### Removed -- [remnant of Rathke's pouch](http://purl.obolibrary.org/obo/UBERON_0006377) SubClassOf [multicellular anatomical structure](http://purl.obolibrary.org/obo/UBERON_0010000) +### superior mesenteric plexus `http://purl.obolibrary.org/obo/UBERON_0005488` #### Added -- [remnant of Rathke's pouch](http://purl.obolibrary.org/obo/UBERON_0006377) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [superior mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0005488) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [superior mesenteric plexus](http://purl.obolibrary.org/obo/UBERON_0005488) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### renal cortex interstitium `http://purl.obolibrary.org/obo/UBERON_0005270` -#### Removed -- [renal cortex interstitium](http://purl.obolibrary.org/obo/UBERON_0005270) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### superior vagus X ganglion `http://purl.obolibrary.org/obo/UBERON_0005364` + +#### Added +- [superior vagus X ganglion](http://purl.obolibrary.org/obo/UBERON_0005364) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [superior vagus X ganglion](http://purl.obolibrary.org/obo/UBERON_0005364) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### reproductive organ `http://purl.obolibrary.org/obo/UBERON_0003133` -#### Removed -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) EquivalentTo [organ](http://purl.obolibrary.org/obo/UBERON_0000062) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003)) -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003) +### supratrochlear vein `http://purl.obolibrary.org/obo/UBERON_8600088` #### Added -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) EquivalentTo [organ](http://purl.obolibrary.org/obo/UBERON_0000062) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414)) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:50898" -- [reproductive organ](http://purl.obolibrary.org/obo/UBERON_0003133) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) [label](http://www.w3.org/2000/01/rdf-schema#label) "supratrochlear vein" +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" -### reproductive system `http://purl.obolibrary.org/obo/UBERON_0000990` -#### Removed -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) EquivalentTo [anatomical system](http://purl.obolibrary.org/obo/UBERON_0000467) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003)) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0000003](http://purl.obolibrary.org/obo/GO_0000003) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the angular vein and drains blood from the muscles and skin of the forehead." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Angular_vein" -#### Added -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) EquivalentTo [anatomical system](http://purl.obolibrary.org/obo/UBERON_0000467) and ([RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414)) +- Class: [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) -- [reproductive system](http://purl.obolibrary.org/obo/UBERON_0000990) SubClassOf [RO_0002216](http://purl.obolibrary.org/obo/RO_0002216) some [GO_0022414](http://purl.obolibrary.org/obo/GO_0022414) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [face](http://purl.obolibrary.org/obo/UBERON_0001456) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [forehead](http://purl.obolibrary.org/obo/UBERON_0008200) -### respiratory tube `http://purl.obolibrary.org/obo/UBERON_0000117` -#### Removed -- [respiratory tube](http://purl.obolibrary.org/obo/UBERON_0000117) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [angular vein](http://purl.obolibrary.org/obo/UBERON_0014686) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) +- [supratrochlear vein](http://purl.obolibrary.org/obo/UBERON_8600088) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -### reticular tissue `http://purl.obolibrary.org/obo/UBERON_0006804` -#### Removed -- [reticular tissue](http://purl.obolibrary.org/obo/UBERON_0006804) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### supreme intercostal vein `http://purl.obolibrary.org/obo/UBERON_8600054` +#### Added +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [label](http://www.w3.org/2000/01/rdf-schema#label) "supreme intercostal vein" -### scalp `http://purl.obolibrary.org/obo/UBERON_0000403` -#### Removed -- [scalp](http://purl.obolibrary.org/obo/UBERON_0000403) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "first posterior intercostal vein" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:4744" +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:4744" +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the superior intercostal vein and drains the first intercostal space." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Supreme_intercostal_vein" -### secretion of lacrimal gland `http://purl.obolibrary.org/obo/UBERON_0001827` -#### Removed -- [secretion of lacrimal gland](http://purl.obolibrary.org/obo/UBERON_0001827) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- Class: [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) -### septal organ of Masera `http://purl.obolibrary.org/obo/UBERON_0015246` -#### Removed -- [septal organ of Masera](http://purl.obolibrary.org/obo/UBERON_0015246) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [thoracic rib cage](http://purl.obolibrary.org/obo/UBERON_0003252) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [thoracic wall](http://purl.obolibrary.org/obo/UBERON_0016403) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) SubClassOf [thoracic vein](http://purl.obolibrary.org/obo/UBERON_0005194) -### septum of scrotum `http://purl.obolibrary.org/obo/UBERON_0006655` -#### Removed -- [septum of scrotum](http://purl.obolibrary.org/obo/UBERON_0006655) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [supreme intercostal vein](http://purl.obolibrary.org/obo/UBERON_8600054) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [brachiocephalic vein](http://purl.obolibrary.org/obo/UBERON_0003711) +### synonym that is inappropriate for amniotes `http://purl.obolibrary.org/obo/uberon/core#NON_AMNIOTE` -### serous membrane `http://purl.obolibrary.org/obo/UBERON_0000042` -#### Removed -- [serous membrane](http://purl.obolibrary.org/obo/UBERON_0000042) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [synonym that is inappropriate for amniotes](http://purl.obolibrary.org/obo/uberon/core#NON_AMNIOTE) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) +### synonym that is inappropriate for mammals `http://purl.obolibrary.org/obo/uberon/core#NON_MAMMAL` -### serous sac `http://purl.obolibrary.org/obo/UBERON_0005906` -#### Removed -- [serous sac](http://purl.obolibrary.org/obo/UBERON_0005906) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [synonym that is inappropriate for mammals](http://purl.obolibrary.org/obo/uberon/core#NON_MAMMAL) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) +### taxonomic disambiguation `http://purl.obolibrary.org/obo/uberon/core#SENSU` -### skeletal ligament `http://purl.obolibrary.org/obo/UBERON_0008846` -#### Removed -- [skeletal ligament](http://purl.obolibrary.org/obo/UBERON_0008846) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [taxonomic disambiguation](http://purl.obolibrary.org/obo/uberon/core#SENSU) SubPropertyOf: [SynonymTypeProperty](http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty) +### thoracic nerve `http://purl.obolibrary.org/obo/UBERON_0003726` -### skin of body `http://purl.obolibrary.org/obo/UBERON_0002097` -#### Removed -- [skin of body](http://purl.obolibrary.org/obo/UBERON_0002097) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [thoracic nerve](http://purl.obolibrary.org/obo/UBERON_0003726) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [thoracic nerve](http://purl.obolibrary.org/obo/UBERON_0003726) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) -### spermatic cord `http://purl.obolibrary.org/obo/UBERON_0005352` -#### Removed -- [spermatic cord](http://purl.obolibrary.org/obo/UBERON_0005352) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### thoracic splanchnic nerve `http://purl.obolibrary.org/obo/UBERON_0018679` +#### Added +- [thoracic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018679) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [thoracic splanchnic nerve](http://purl.obolibrary.org/obo/UBERON_0018679) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### stomach glandular region `http://purl.obolibrary.org/obo/UBERON_0011953` -#### Removed -- [stomach glandular region](http://purl.obolibrary.org/obo/UBERON_0011953) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### thoracoacromial vein `http://purl.obolibrary.org/obo/UBERON_8600074` +#### Added +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [label](http://www.w3.org/2000/01/rdf-schema#label) "thoracoacromial vein" -### stomach non-glandular region `http://purl.obolibrary.org/obo/UBERON_0011954` -#### Removed -- [stomach non-glandular region](http://purl.obolibrary.org/obo/UBERON_0011954) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "thoraco-acromial vein" + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:23058" -### stratum spinosum of epidermis `http://purl.obolibrary.org/obo/UBERON_0002026` -#### Removed -- [stratum spinosum of epidermis](http://purl.obolibrary.org/obo/UBERON_0002026) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the axillary vein and drains blood from the thoracoacromial region, including the pectoral, shoulder, and clavicular regions." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Axillary_vein" +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:23058" +- Class: [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) -### stroma of bone marrow `http://purl.obolibrary.org/obo/UBERON_0007195` -#### Removed -- [stroma of bone marrow](http://purl.obolibrary.org/obo/UBERON_0007195) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [shoulder](http://purl.obolibrary.org/obo/UBERON_0001467) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [axillary vein](http://purl.obolibrary.org/obo/UBERON_0000985) +- [thoracoacromial vein](http://purl.obolibrary.org/obo/UBERON_8600074) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) -### subcommissural organ `http://purl.obolibrary.org/obo/UBERON_0002139` -#### Removed -- [subcommissural organ](http://purl.obolibrary.org/obo/UBERON_0002139) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### thyrocervical trunk `http://purl.obolibrary.org/obo/UBERON_8600062` + +#### Added +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) [label](http://www.w3.org/2000/01/rdf-schema#label) "thyrocervical trunk" +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:3990" -### subendocardium layer `http://purl.obolibrary.org/obo/UBERON_0005984` -#### Removed -- [subendocardium layer](http://purl.obolibrary.org/obo/UBERON_0005984) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An artery that branches from the subclavian artery and supplies the thyroid gland, neck, and upper back regions." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Thyrocervical_trunk" +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### synchondrosis `http://purl.obolibrary.org/obo/UBERON_0002215` -#### Removed -- [synchondrosis](http://purl.obolibrary.org/obo/UBERON_0002215) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- Class: [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) + +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) SubClassOf [cervical artery](http://purl.obolibrary.org/obo/UBERON_0012320) +- [thyrocervical trunk](http://purl.obolibrary.org/obo/UBERON_8600062) SubClassOf [RO_0002252](http://purl.obolibrary.org/obo/RO_0002252) some [subclavian artery](http://purl.obolibrary.org/obo/UBERON_0001533) -### tear film `http://purl.obolibrary.org/obo/UBERON_0022287` +### tonsil `http://purl.obolibrary.org/obo/UBERON_0002372` #### Removed -- [tear film](http://purl.obolibrary.org/obo/UBERON_0022287) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [tonsil](http://purl.obolibrary.org/obo/UBERON_0002372) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### tendon sheath `http://purl.obolibrary.org/obo/UBERON_0000304` -#### Removed -- [tendon sheath](http://purl.obolibrary.org/obo/UBERON_0000304) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transitively anteriorly connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_anteriorly_connected_to` +#### Added +- Transitive: [transitively anteriorly connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_anteriorly_connected_to) -### theca externa `http://purl.obolibrary.org/obo/UBERON_0000156` -#### Removed -- [theca externa](http://purl.obolibrary.org/obo/UBERON_0000156) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transitively distally connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_distally_connected_to` +#### Added +- Transitive: [transitively distally connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_distally_connected_to) -### thymoid `http://purl.obolibrary.org/obo/UBERON_0009116` -#### Removed -- [thymoid](http://purl.obolibrary.org/obo/UBERON_0009116) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transitively proximally connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_proximally_connected_to` +#### Added +- Transitive: [transitively proximally connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_proximally_connected_to) -### thymus `http://purl.obolibrary.org/obo/UBERON_0002370` -#### Removed -- [thymus](http://purl.obolibrary.org/obo/UBERON_0002370) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transitively_connected to `http://purl.obolibrary.org/obo/uberon/core#transitively_connected_to` +#### Added +- Transitive: [transitively_connected to](http://purl.obolibrary.org/obo/uberon/core#transitively_connected_to) -### thymus corticomedullary boundary `http://purl.obolibrary.org/obo/UBERON_0003988` -#### Removed -- [thymus corticomedullary boundary](http://purl.obolibrary.org/obo/UBERON_0003988) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### transverse cervical vein `http://purl.obolibrary.org/obo/UBERON_8600075` +#### Added +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:50858" -### thymus lobule `http://purl.obolibrary.org/obo/UBERON_0002125` -#### Removed -- [thymus lobule](http://purl.obolibrary.org/obo/UBERON_0002125) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) [label](http://www.w3.org/2000/01/rdf-schema#label) "transverse cervical vein" +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the external jugular vein and drains blood from the superficial muscles of the back, mainly the trapezius muscle." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Transverse_cervical_veins" +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### tracheobronchial tree `http://purl.obolibrary.org/obo/UBERON_0007196` -#### Removed -- [tracheobronchial tree](http://purl.obolibrary.org/obo/UBERON_0007196) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- Class: [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) SubClassOf [neck blood vessel](http://purl.obolibrary.org/obo/UBERON_0003502) -### trophoblast island `http://purl.obolibrary.org/obo/UBERON_8600050` +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [trapezius muscle](http://purl.obolibrary.org/obo/UBERON_0002380) -#### Added -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [label](http://www.w3.org/2000/01/rdf-schema#label) "trophoblast island" +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [external jugular vein](http://purl.obolibrary.org/obo/UBERON_0001101) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "A trophoblast island is directly continuous with villous cytotrophoblast in places where the villous syncytiotrophoblast is interrupted." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +- [transverse cervical vein](http://purl.obolibrary.org/obo/UBERON_8600075) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasOBONamespace](http://www.geneontology.org/formats/oboInOwl#hasOBONamespace) "uberon" -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +### transverse nasal root vein `http://purl.obolibrary.org/obo/UBERON_8600089` -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "trophoblastic cell island" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +#### Added +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the angular veins and drains blood from the bridge of the nose." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "https://plasticsurgerykey.com/veins-of-the-face-and-neck/" -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [id](http://www.geneontology.org/formats/oboInOwl#id) "UBERON:8600050" +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [date](http://purl.org/dc/terms/date) "2024-04-15T10:05:35Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasExactSynonym](http://www.geneontology.org/formats/oboInOwl#hasExactSynonym) "intraplacental trophoblast island" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "PMID:33218578" +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) [label](http://www.w3.org/2000/01/rdf-schema#label) "transverse nasal root vein" -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "An accumulation of extravillous trophoblast cells at the tip of a floating villus or occasionally attached to the chorionic plate embedded in fibrin." - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +- Class: [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) [hasRelatedSynonym](http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym) "cell island" - - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "doi:10.1007/978-3-030-84725-8" +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) SubClassOf [ectoderm-derived structure](http://purl.obolibrary.org/obo/UBERON_0004121) -- Class: [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) SubClassOf [head blood vessel](http://purl.obolibrary.org/obo/UBERON_0003496) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) SubClassOf [RO_0001025](http://purl.obolibrary.org/obo/RO_0001025) some [intervillous space](http://purl.obolibrary.org/obo/UBERON_8600025) +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [nose](http://purl.obolibrary.org/obo/UBERON_0000004) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) SubClassOf [anatomical structure](http://purl.obolibrary.org/obo/UBERON_0000061) +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [angular vein](http://purl.obolibrary.org/obo/UBERON_0014686) -- [trophoblast island](http://purl.obolibrary.org/obo/UBERON_8600050) SubClassOf [RO_0002473](http://purl.obolibrary.org/obo/RO_0002473) some [CL_0000351](http://purl.obolibrary.org/obo/CL_0000351) +- [transverse nasal root vein](http://purl.obolibrary.org/obo/UBERON_8600089) SubClassOf [craniocervical region vein](http://purl.obolibrary.org/obo/UBERON_0009141) -### tunica adventitia of blood vessel `http://purl.obolibrary.org/obo/UBERON_0005734` +### trigeminal nerve `http://purl.obolibrary.org/obo/UBERON_0001645` #### Removed -- [tunica adventitia of blood vessel](http://purl.obolibrary.org/obo/UBERON_0005734) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [trigeminal nerve](http://purl.obolibrary.org/obo/UBERON_0001645) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9322" -### tunica albuginea `http://purl.obolibrary.org/obo/UBERON_0006610` -#### Removed -- [tunica albuginea](http://purl.obolibrary.org/obo/UBERON_0006610) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### trigeminal nerve root `http://purl.obolibrary.org/obo/UBERON_0004673` + +#### Added +- [trigeminal nerve root](http://purl.obolibrary.org/obo/UBERON_0004673) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9322" +### tympanic nerve `http://purl.obolibrary.org/obo/UBERON_0036216` -### tunica fibrosa of eyeball `http://purl.obolibrary.org/obo/UBERON_0012430` -#### Removed -- [tunica fibrosa of eyeball](http://purl.obolibrary.org/obo/UBERON_0012430) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [tympanic nerve](http://purl.obolibrary.org/obo/UBERON_0036216) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) +- [tympanic nerve](http://purl.obolibrary.org/obo/UBERON_0036216) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) -### tunica intima `http://purl.obolibrary.org/obo/UBERON_0002523` -#### Removed -- [tunica intima](http://purl.obolibrary.org/obo/UBERON_0002523) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### uberon_slim `http://purl.obolibrary.org/obo/uberon/core#uberon_slim` +#### Added +- [uberon_slim](http://purl.obolibrary.org/obo/uberon/core#uberon_slim) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -### tunica vaginalis testis `http://purl.obolibrary.org/obo/UBERON_0006650` -#### Removed -- [tunica vaginalis testis](http://purl.obolibrary.org/obo/UBERON_0006650) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### ulnar vein `http://purl.obolibrary.org/obo/UBERON_8600093` +#### Added +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Ulnar_veins" +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) -### udder `http://purl.obolibrary.org/obo/UBERON_0013216` -#### Removed -- [udder](http://purl.obolibrary.org/obo/UBERON_0013216) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:22950" +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) [label](http://www.w3.org/2000/01/rdf-schema#label) "ulnar vein" +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" -### ultimobranchial body `http://purl.obolibrary.org/obo/UBERON_0003092` -#### Removed -- [ultimobranchial body](http://purl.obolibrary.org/obo/UBERON_0003092) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- Class: [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) + +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) SubClassOf [arm blood vessel](http://purl.obolibrary.org/obo/UBERON_0003507) + +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) SubClassOf ([RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [forelimb zeugopod](http://purl.obolibrary.org/obo/UBERON_0002386)) and ([RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [manus](http://purl.obolibrary.org/obo/UBERON_0002398)) + +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) +- [ulnar vein](http://purl.obolibrary.org/obo/UBERON_8600093) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [brachial vein](http://purl.obolibrary.org/obo/UBERON_0001413) -### upper fourth secondary molar tooth `http://purl.obolibrary.org/obo/UBERON_7500057` +### unverified_taxonomic_grouping `http://purl.obolibrary.org/obo/uberon/core#unverified_taxonomic_grouping` #### Added -- [upper fourth secondary molar tooth](http://purl.obolibrary.org/obo/UBERON_7500057) EquivalentTo [molar tooth 4](http://purl.obolibrary.org/obo/UBERON_7500055) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [upper jaw region](http://purl.obolibrary.org/obo/UBERON_0001709)) and ([BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [secondary dentition](http://purl.obolibrary.org/obo/UBERON_0007774)) +- [unverified_taxonomic_grouping](http://purl.obolibrary.org/obo/uberon/core#unverified_taxonomic_grouping) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) -- [upper fourth secondary molar tooth](http://purl.obolibrary.org/obo/UBERON_7500057) SubClassOf [molar tooth 4](http://purl.obolibrary.org/obo/UBERON_7500055) +### upper_level `http://purl.obolibrary.org/obo/uberon/core#upper_level` -### vascular cord `http://purl.obolibrary.org/obo/UBERON_0006965` -#### Removed -- [vascular cord](http://purl.obolibrary.org/obo/UBERON_0006965) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [upper_level](http://purl.obolibrary.org/obo/uberon/core#upper_level) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) +### uterine vein `http://purl.obolibrary.org/obo/UBERON_8600058` -### vascular plexus `http://purl.obolibrary.org/obo/UBERON_0005629` -#### Removed -- [vascular plexus](http://purl.obolibrary.org/obo/UBERON_0005629) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +#### Added +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "FMA:18896" +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) [label](http://www.w3.org/2000/01/rdf-schema#label) "uterine vein" +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) [IAO_0000115](http://purl.obolibrary.org/obo/IAO_0000115) "A vein that is tributary of the internal iliac vein and drains the uterus." + - [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "wikipedia:Uterine_veins" -### venous system `http://purl.obolibrary.org/obo/UBERON_0004582` -#### Removed -- [venous system](http://purl.obolibrary.org/obo/UBERON_0004582) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) [date](http://purl.org/dc/terms/date) "2024-06-06T09:53:48Z" +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) [contributor](http://purl.org/dc/terms/contributor) [0000-0001-6677-8489](https://orcid.org/0000-0001-6677-8489) +- Class: [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) -### vibrissal follicle-sinus complex `http://purl.obolibrary.org/obo/UBERON_0034942` -#### Removed -- [vibrissal follicle-sinus complex](http://purl.obolibrary.org/obo/UBERON_0034942) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) SubClassOf [reproductive structure](http://purl.obolibrary.org/obo/UBERON_0005156) +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) SubClassOf [RO_0020102](http://purl.obolibrary.org/obo/RO_0020102) some [uterus](http://purl.obolibrary.org/obo/UBERON_0000995) +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) SubClassOf [BFO_0000050](http://purl.obolibrary.org/obo/BFO_0000050) some [uterus](http://purl.obolibrary.org/obo/UBERON_0000995) -### webbed autopod `http://purl.obolibrary.org/obo/UBERON_0008440` -#### Removed -- [webbed autopod](http://purl.obolibrary.org/obo/UBERON_0008440) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) SubClassOf [vein](http://purl.obolibrary.org/obo/UBERON_0001638) +- [uterine vein](http://purl.obolibrary.org/obo/UBERON_8600058) SubClassOf [RO_0002376](http://purl.obolibrary.org/obo/RO_0002376) some [internal iliac vein](http://purl.obolibrary.org/obo/UBERON_0001317) -### white pulp of spleen `http://purl.obolibrary.org/obo/UBERON_0001959` +### vagus nerve `http://purl.obolibrary.org/obo/UBERON_0001759` #### Removed -- [white pulp of spleen](http://purl.obolibrary.org/obo/UBERON_0001959) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +- [vagus nerve](http://purl.obolibrary.org/obo/UBERON_0001759) [hasDbXref](http://www.geneontology.org/formats/oboInOwl#hasDbXref) "HBA:9337" -### zone of skin `http://purl.obolibrary.org/obo/UBERON_0000014` -#### Removed -- [zone of skin](http://purl.obolibrary.org/obo/UBERON_0000014) SubClassOf [PR_000050567](http://purl.obolibrary.org/obo/PR_000050567) +### ventral ramus of spinal nerve `http://purl.obolibrary.org/obo/UBERON_0006838` + +#### Added +- [ventral ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006838) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [ventral ramus of spinal nerve](http://purl.obolibrary.org/obo/UBERON_0006838) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### ventral root of spinal cord `http://purl.obolibrary.org/obo/UBERON_0002260` + +#### Added +- [ventral root of spinal cord](http://purl.obolibrary.org/obo/UBERON_0002260) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) + +- [ventral root of spinal cord](http://purl.obolibrary.org/obo/UBERON_0002260) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) + + +### vertebrate_core `http://purl.obolibrary.org/obo/uberon/core#vertebrate_core` + +#### Added +- [vertebrate_core](http://purl.obolibrary.org/obo/uberon/core#vertebrate_core) SubPropertyOf: [SubsetProperty](http://www.geneontology.org/formats/oboInOwl#SubsetProperty) + + +### vidian nerve `http://purl.obolibrary.org/obo/UBERON_0018412` + +#### Added +- [vidian nerve](http://purl.obolibrary.org/obo/UBERON_0018412) [inSubset](http://www.geneontology.org/formats/oboInOwl#inSubset) [human_reference_atlas](http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas) +- [vidian nerve](http://purl.obolibrary.org/obo/UBERON_0018412) [RO_0002175](http://purl.obolibrary.org/obo/RO_0002175) [NCBITaxon_9606](http://purl.obolibrary.org/obo/NCBITaxon_9606) diff --git a/subsets/life-stages-composite.obo b/subsets/life-stages-composite.obo index beef637c5..852236689 100755 --- a/subsets/life-stages-composite.obo +++ b/subsets/life-stages-composite.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: uberon/releases/2024-05-13/subsets/life-stages-composite.owl +data-version: uberon/releases/2024-07-02/subsets/life-stages-composite.owl subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -100,6 +100,7 @@ synonymtypedef: equivalent_name "" synonymtypedef: genbank_common_name "" synonymtypedef: Gene-based "" synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" +synonymtypedef: human "" synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" synonymtypedef: in_part "" synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" @@ -122,8 +123,17 @@ synonymtypedef: synonym "" synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns" synonymtypedef: systematic_synonym "" synonymtypedef: vertebrate "" +idspace: dc http://purl.org/dc/elements/1.1/ +idspace: doap http://usefulinc.com/ns/doap# +idspace: foaf http://xmlns.com/foaf/0.1/ +idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# +idspace: skos http://www.w3.org/2004/02/skos/core# +idspace: sssom https://w3id.org/sssom/ +idspace: swrl http://www.w3.org/2003/11/swrl# +idspace: swrlb http://www.w3.org/2003/11/swrlb# +idspace: terms http://purl.org/dc/terms/ ontology: uberon/subsets/life-stages-composite -property_value: owl:versionInfo "2024-05-13" xsd:string +property_value: owl:versionInfo "2024-07-02" xsd:string [Term] id: BFO:0000001 @@ -1186,6 +1196,34 @@ name: anatomical entity namespace: spatial def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH] +[Term] +id: CARO:0000003 +name: anatomical structure +namespace: spatial +def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CC:DOS] +is_a: CARO:0000006 ! material anatomical entity + +[Term] +id: CARO:0000006 +name: material anatomical entity +namespace: spatial +def: "An anatomical entity that has mass." [CC:DOS] +is_a: CARO:0000000 ! anatomical entity + +[Term] +id: CARO:0000007 +name: immaterial anatomical entity +namespace: spatial +def: "An anatomical entity that has no mass." [CC:DOS] +is_a: CARO:0000000 ! anatomical entity + +[Term] +id: CARO:0000010 +name: anatomical boundary +namespace: spatial +def: "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." [CC:DOS] +is_a: CARO:0000007 ! immaterial anatomical entity + [Term] id: CEPH:0000006 name: adult stage @@ -3758,7 +3796,7 @@ comment: The definition of cell is intended to represent all cells, and thus a c subset: cellxgene_subset subset: ubprop:upper_level xref: CALOHA:TS-2035 -xref: FBbt:00007002 +xref: FBbt:00007002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:68646 xref: GO:0005623 xref: KUPO:0000002 @@ -3766,6 +3804,7 @@ xref: MESH:D002477 xref: VHOG:0001533 xref: WBbt:0004017 xref: XAO:0003012 +xref: ZFA:0009000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: UBERON:0000061 ! anatomical structure relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms @@ -3773,6 +3812,7 @@ relationship: only_in_taxon NCBITaxon:131567 ! cellular organisms id: CL:0000007 name: early embryonic cell (metazoa) def: "A cell found in the embryo before the formation of all the gem layers is complete." [GOC:tfm] +xref: ZFA:0009002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) [Term] @@ -3786,6 +3826,7 @@ subset: human_reference_atlas synonym: "animal stem cell" EXACT [] xref: CALOHA:TS-2086 xref: FMA:63368 +xref: ZFA:0005957 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0011115 ! precursor cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0017145 ! stem cell division @@ -3800,6 +3841,7 @@ def: "A stem cell from which all cells of the body can form." [GOC:add, GOC:tfm] synonym: "totipotential stem cell" EXACT [] xref: FMA:84790 xref: MESH:D039901 +xref: ZFA:0009024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000723 ! somatic stem cell [Term] @@ -3819,9 +3861,10 @@ name: myoblast def: "A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair." [GOC:tfm, MESH:D032446, PMID:21849021] xref: BTO:0000222 xref: CALOHA:TS-0650 -xref: FBbt:00005083 +xref: FBbt:00005083 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:70335 xref: VHOG:0001529 +xref: ZFA:0009025 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000680 ! muscle precursor cell [Term] @@ -3835,9 +3878,10 @@ synonym: "epitheliocyte" EXACT [] xref: BTO:0000414 xref: CALOHA:TS-2026 xref: CARO:0000077 -xref: FBbt:00000124 +xref: FBbt:00000124 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:66768 xref: WBbt:0003672 +xref: ZFA:0009034 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000000 ! cell relationship: part_of UBERON:0000483 ! epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -3848,6 +3892,7 @@ id: CL:0000068 name: duct epithelial cell def: "An epithelial cell that is part of a duct." [https://orcid.org/0000-0001-5208-3432] subset: cellxgene_subset +xref: ZFA:0009372 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000066 ! epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0000058 ! duct @@ -3858,6 +3903,7 @@ id: CL:0000133 name: neurectodermal cell def: "Ectoderm destined to be nervous tissue." [GOC:tfm, ISBN:068340007X] synonym: "neurectoderm cell" EXACT [] +xref: ZFA:0009080 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000221 ! ectodermal cell [Term] @@ -3877,9 +3923,10 @@ synonym: "myocyte" EXACT [] xref: BTO:0000888 xref: BTO:0000902 xref: CALOHA:TS-2032 -xref: FBbt:00005074 +xref: FBbt:00005074 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67328 xref: WBbt:0003675 +xref: ZFA:0009114 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000183 ! contractile cell is_a: CL:0000393 ! electrically responsive cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -3890,6 +3937,7 @@ property_value: depiction "https://www.swissbiopics.org/api/image/Muscle_cells.s id: CL:0000211 name: electrically active cell def: "A cell whose function is determined by the generation or the reception of an electric signal." [FB:ma] +xref: ZFA:0009128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000000 ! cell [Term] @@ -3898,6 +3946,7 @@ name: ectodermal cell def: "A cell of the outer of the three germ layers of the embryo." [MESH:D004475] synonym: "ectoderm cell" EXACT [] xref: FMA:72549 +xref: ZFA:0009137 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000924 ! ectoderm @@ -3909,6 +3958,7 @@ subset: cellxgene_subset synonym: "mesoblast" EXACT [] synonym: "mesoderm cell" EXACT [] xref: FMA:72554 +xref: ZFA:0009138 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000926 ! mesoderm @@ -3918,12 +3968,14 @@ name: endodermal cell def: "A cell of the inner of the three germ layers of the embryo." [MESH:D004707] synonym: "endoderm cell" EXACT [] xref: FMA:72555 +xref: ZFA:0009139 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0002321 ! embryonic cell (metazoa) relationship: part_of UBERON:0000925 ! endoderm [Term] id: CL:0000255 name: eukaryotic cell +def: "Any cell that only exists in Eukaryota." [FBC:Autogenerated] subset: cellxgene_subset xref: MESH:D005057 is_a: CL:0000000 ! cell @@ -3956,12 +4008,14 @@ relationship: only_in_taxon NCBITaxon:33208 ! Metazoa id: CL:0000393 name: electrically responsive cell def: "A cell whose function is determined by its response to an electric signal." [FB:ma] +xref: ZFA:0009190 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000404 name: electrically signaling cell def: "A cell that initiates an electrical signal and passes that signal to another cell." [FB:ma] +xref: ZFA:0009193 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000211 ! electrically active cell [Term] @@ -3975,10 +4029,11 @@ subset: human_reference_atlas synonym: "nerve cell" EXACT [] xref: BTO:0000938 xref: CALOHA:TS-0683 -xref: FBbt:00005106 +xref: FBbt:00005106 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:54527 xref: VHOG:0001483 xref: WBbt:0003679 +xref: ZFA:0009248 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000393 ! electrically responsive cell is_a: CL:0000404 ! electrically signaling cell is_a: CL:0002319 ! neural cell @@ -3991,6 +4046,7 @@ id: CL:0000680 name: muscle precursor cell def: "A non-terminally differentiated cell that is capable of developing into a muscle cell." [GOC:add] subset: cellxgene_subset +xref: ZFA:0009291 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000055 ! non-terminally differentiated cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0011115 ! precursor cell @@ -4004,6 +4060,7 @@ name: somatic stem cell def: "A stem cell that can give rise to cell types of the body other than those of the germ-line." [GO:0048103] xref: CALOHA:TS-2086 xref: MESH:D053687 +xref: ZFA:0009307 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000034 ! stem cell intersection_of: CL:0000034 ! stem cell intersection_of: capable_of GO:0048103 ! somatic stem cell division @@ -4014,6 +4071,7 @@ id: CL:0002077 name: ecto-epithelial cell def: "An epithelial cell derived from ectoderm." [FMA:69074, GOC:tfm] xref: FMA:69074 +xref: ZFA:0009385 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000066 ! epithelial cell is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: CL:0000066 ! epithelial cell @@ -4043,6 +4101,7 @@ def: "A cell of the embryo." [FMA:0618947256] xref: CALOHA:TS-0263 xref: FMA:82840 xref: WBbt:0007028 +xref: ZFA:0007089 {sssom:mapping_justification="https://w3id.org/semapv/vocab/UnspecifiedMatching"} is_a: CL:0000000 ! cell relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-15T03:39:21Z @@ -6238,7 +6297,6 @@ synonym: "macromolecule formation" EXACT [] synonym: "macromolecule synthesis" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:0044249 ! cellular biosynthetic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:33694 ! biomacromolecule relationship: has_primary_output CHEBI:33694 ! biomacromolecule @@ -6588,7 +6646,7 @@ creation_date: 2010-02-16T09:30:50Z id: GO:0030054 name: cell junction namespace: cellular_component -def: "A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella." [GOC:aruk, GOC:bc, GOC:mah, http://www.vivo.colostate.edu/hbooks/cmb/cells/pmemb/junctions_a.html, ISBN:0198506732, PMID:26820516, PMID:28096264] +def: "A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella." [GOC:aruk, GOC:bc, GOC:mah, ISBN:0198506732, PMID:26820516, PMID:28096264] subset: goslim_agr subset: goslim_drosophila subset: goslim_flybase_ribbon @@ -6846,7 +6904,7 @@ synonym: "biopolymer metabolic process" EXACT [GOC:mtg_chebi_dec09] synonym: "macromolecule metabolism" EXACT [] synonym: "multicellular organismal macromolecule metabolic process" NARROW [] synonym: "organismal macromolecule metabolism" EXACT [] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:33694 ! biomacromolecule relationship: has_primary_input_or_output CHEBI:33694 ! biomacromolecule @@ -6915,13 +6973,14 @@ is_a: GO:0009987 ! cellular process id: GO:0044238 name: primary metabolic process namespace: biological_process -def: "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators, http://www.metacyc.org] +def: "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators] subset: gocheck_do_not_annotate subset: goslim_euk_cellular_processes_ribbon subset: goslim_pir subset: goslim_plant_ribbon subset: goslim_prokaryote_ribbon synonym: "primary metabolism" EXACT [] +xref: Wikipedia:Primary_metabolite is_a: GO:0008152 ! metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI @@ -7261,23 +7320,6 @@ is_a: GO:0032501 ! multicellular organismal process created_by: mah creation_date: 2010-02-19T04:23:55Z -[Term] -id: GO:0071704 -name: organic substance metabolic process -namespace: biological_process -def: "The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon." [GOC:mah] -subset: gocheck_do_not_annotate -synonym: "organic molecular entity metabolic process" EXACT [] -synonym: "organic molecular entity metabolism" EXACT [] -synonym: "organic substance metabolism" EXACT [] -is_a: GO:0008152 ! metabolic process -intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:50860 ! organic molecular entity -relationship: has_primary_input_or_output CHEBI:50860 ! organic molecular entity -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: mah -creation_date: 2010-03-08T03:32:18Z - [Term] id: GO:0071826 name: protein-RNA complex organization @@ -7470,7 +7512,7 @@ namespace: biological_process def: "The chemical reactions and pathways involving organonitrogen compound." [GOC:pr, GOC:TermGenie] subset: gocheck_do_not_annotate synonym: "organonitrogen compound metabolism" EXACT [GOC:TermGenie] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound relationship: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound @@ -7478,30 +7520,6 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i created_by: pr creation_date: 2012-11-04T15:17:52Z -[Term] -id: GO:1901576 -name: organic substance biosynthetic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon." [GOC:pr, GOC:TermGenie] -subset: gocheck_do_not_annotate -synonym: "organic molecular entity anabolism" EXACT [GOC:TermGenie] -synonym: "organic molecular entity biosynthesis" EXACT [GOC:TermGenie] -synonym: "organic molecular entity biosynthetic process" EXACT [] -synonym: "organic molecular entity formation" EXACT [GOC:TermGenie] -synonym: "organic molecular entity synthesis" EXACT [GOC:TermGenie] -synonym: "organic substance anabolism" EXACT [] -synonym: "organic substance biosynthesis" EXACT [] -synonym: "organic substance formation" EXACT [] -synonym: "organic substance synthesis" EXACT [] -is_a: GO:0009058 ! biosynthetic process -is_a: GO:0071704 ! organic substance metabolic process -intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:50860 ! organic molecular entity -relationship: has_primary_output CHEBI:50860 ! organic molecular entity -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: pr -creation_date: 2012-11-05T11:04:40Z - [Term] id: GO:1990904 name: ribonucleoprotein complex @@ -8508,7 +8526,7 @@ property_value: end_mph "24.0" xsd:float property_value: end_yph "2.0" xsd:float property_value: IAO:0000589 "young adult stage (chicken)" xsd:string property_value: start_mph "5.0" xsd:float -property_value: start_yph "0.4.0" xsd:float +property_value: start_yph "0.4" xsd:float [Term] id: GgalDv:0000079 @@ -11628,9 +11646,9 @@ is_a: UBERON:0000105 ! life cycle stage relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage property_value: end_dpf "77.0" xsd:float +property_value: Gestational_age "3.0" xsd:float property_value: IAO:0000589 "third LMP month stage (human)" xsd:string property_value: start_dpf "56.0" xsd:float -property_value: Wikipedia:Gestational_age "3.0" xsd:float [Term] id: HsapDv:0000198 @@ -11643,9 +11661,9 @@ relationship: immediately_preceded_by HsapDv:0000197 ! third LMP month stage (hu relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage property_value: end_dpf "105.0" xsd:float +property_value: Gestational_age "4.0" xsd:float property_value: IAO:0000589 "fourth LMP month stage (human)" xsd:string property_value: start_dpf "77.0" xsd:float -property_value: Wikipedia:Gestational_age "4.0" xsd:float [Term] id: HsapDv:0000199 @@ -11658,9 +11676,9 @@ relationship: immediately_preceded_by HsapDv:0000198 ! fourth LMP month stage (h relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage property_value: end_dpf "133.0" xsd:float +property_value: Gestational_age "5.0" xsd:float property_value: IAO:0000589 "fifth LMP month stage (human)" xsd:string property_value: start_dpf "105.0" xsd:float -property_value: Wikipedia:Gestational_age "5.0" xsd:float [Term] id: HsapDv:0000200 @@ -11673,9 +11691,9 @@ relationship: immediately_preceded_by HsapDv:0000199 ! fifth LMP month stage (hu relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage property_value: end_dpf "168.0" xsd:float +property_value: Gestational_age "6.0" xsd:float property_value: IAO:0000589 "sixth LMP month stage (human)" xsd:string property_value: start_dpf "133.0" xsd:float -property_value: Wikipedia:Gestational_age "6.0" xsd:float [Term] id: HsapDv:0000201 @@ -11688,9 +11706,9 @@ relationship: immediately_preceded_by HsapDv:0000200 ! sixth LMP month stage (hu relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage property_value: end_dpf "196.0" xsd:float +property_value: Gestational_age "7.0" xsd:float property_value: IAO:0000589 "seventh LMP month stage (human)" xsd:string property_value: start_dpf "168.0" xsd:float -property_value: Wikipedia:Gestational_age "7.0" xsd:float [Term] id: HsapDv:0000202 @@ -11703,9 +11721,9 @@ relationship: immediately_preceded_by HsapDv:0000201 ! seventh LMP month stage ( relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage property_value: end_dpf "231.0" xsd:float +property_value: Gestational_age "8.0" xsd:float property_value: IAO:0000589 "eighth LMP month stage (human)" xsd:string property_value: start_dpf "196.0" xsd:float -property_value: Wikipedia:Gestational_age "8.0" xsd:float [Term] id: HsapDv:0000203 @@ -11718,9 +11736,9 @@ relationship: immediately_preceded_by HsapDv:0000202 ! eighth LMP month stage (h relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0007220 ! late embryonic stage property_value: end_dpf "266.0" xsd:float +property_value: Gestational_age "9.0" xsd:float property_value: IAO:0000589 "ninth LMP month stage (human)" xsd:string property_value: start_dpf "231.0" xsd:float -property_value: Wikipedia:Gestational_age "9.0" xsd:float [Term] id: HsapDv:0000205 @@ -20647,7 +20665,7 @@ synonym: "ducts" RELATED OMO:0003004 [XAO:0004000] synonym: "exocrine duct" NARROW [] synonym: "exocrine gland duct" NARROW [] xref: AAO:0011123 -xref: FBbt:00100314 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100314 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:30320 xref: galen:Duct xref: NCIT:C12948 @@ -20696,7 +20714,7 @@ xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 -xref: FBbt:00007001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:305751 xref: FMA:67135 xref: GAID:781 @@ -20910,11 +20928,11 @@ relationship: immediately_preceded_by UBERON:0000069 ! larval stage relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota relationship: part_of UBERON:0000092 ! post-embryonic stage relationship: simultaneous_with GO:0035209 {notes="may be better to model pupal development as including the pre-pupal stage"} ! pupal development -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/562" xsd:anyURI property_value: taxon_notes "The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago" xsd:string @@ -21053,7 +21071,7 @@ xref: BILS:0000106 xref: EFO:0001322 xref: EHDAA:27 xref: FBdv:00005288 -xref: IDOMAL:0000302 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000302 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12601 xref: PdumDv:0000100 xref: VHOG:0000745 @@ -21267,7 +21285,7 @@ xref: EFO:0000825 xref: EHDAA2:0001326 xref: EHDAA:542 xref: EMAPA:16262 -xref: FBbt:00003126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:49184 xref: GAID:75 xref: galen:Mouth @@ -21384,7 +21402,7 @@ xref: CALOHA:TS-2101 xref: CARO:0000004 xref: EHDAA2:0003004 xref: EMAPA:35178 -xref: FBbt:00007019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9669 xref: galen:BodySubstance xref: HAO:0000004 @@ -21420,7 +21438,7 @@ xref: AEO:0000005 xref: BILA:0000005 xref: CARO:0000005 xref: EHDAA2:0003005 -xref: FBbt:00007017 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5897 xref: HAO:0000005 xref: NCIT:C94478 @@ -21449,7 +21467,7 @@ xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 -xref: FBbt:00007016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 @@ -21475,7 +21493,7 @@ xref: AEO:0000007 xref: BILA:0000007 xref: CARO:0000007 xref: EHDAA2:0003007 -xref: FBbt:00007015 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67112 xref: HAO:0000007 xref: TAO:0001835 @@ -21514,11 +21532,11 @@ xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 -xref: FBbt:00004856 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004856 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 -xref: IDOMAL:0002460 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002460 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MA:0000003 xref: NCIT:C12919 xref: SCTID:278195005 @@ -21570,7 +21588,7 @@ xref: EHDAA2:0003191 xref: EHDAA:1 xref: EMAPA:25765 xref: EV:0100016 -xref: FBbt:00000001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:256135 xref: galen:Organism xref: HAO:0000012 @@ -21606,7 +21624,7 @@ xref: AEO:0000040 xref: BILA:0000040 xref: CARO:0000040 xref: EHDAA2:0003040 -xref: FBbt:00007013 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007013 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 @@ -21639,7 +21657,7 @@ xref: CALOHA:TS-2090 xref: CARO:0000043 xref: EHDAA2:0003043 xref: EMAPA:35868 -xref: FBbt:00007003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9637 xref: galen:Tissue xref: HAO:0000043 @@ -21675,7 +21693,7 @@ xref: AEO:0000055 xref: BILA:0000055 xref: CARO:0000055 xref: EHDAA2:0003055 -xref: FBbt:00007010 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000055 xref: TAO:0001488 xref: TGMA:0001847 @@ -21709,7 +21727,7 @@ xref: CALOHA:TS-0288 xref: CARO:0000066 xref: EHDAA2:0003066 xref: EMAPA:32738 -xref: FBbt:00007005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 @@ -21788,11 +21806,11 @@ xref: EHDAA2:0000002 xref: EHDAA2_RETIRED:0003236 xref: EHDAA:38 xref: EMAPA:16039 -xref: FBbt:00000052 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000052 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69068 xref: GAID:963 xref: http://neurolex.org/wiki/Category\:Embryonic_organism -xref: IDOMAL:0000646 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MAT:0000226 xref: MESH:D004622 xref: MIAA:0000019 @@ -21834,7 +21852,7 @@ xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: EMAPA:36033 -xref: FBbt:00000110 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000110 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69069 xref: GAID:1303 xref: MESH:D005855 @@ -21869,7 +21887,7 @@ xref: EFO:0000414 xref: EHDAA2:0000428 xref: EMAPA:16069 xref: EV:0100003 -xref: FBbt:00000111 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000111 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 @@ -21911,7 +21929,7 @@ xref: EFO:0002545 xref: EHDAA2:0000436 xref: EMAPA:16062 xref: EV:0100005 -xref: FBbt:00000125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69071 xref: GAID:1305 xref: MAT:0000175 @@ -21958,7 +21976,7 @@ xref: EHDAA:160 xref: EHDAA:183 xref: EMAPA:16083 xref: EV:0100006 -xref: FBbt:00000126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69072 xref: GAID:522 xref: MAT:0000174 @@ -22003,7 +22021,7 @@ synonym: "stomodeal-hypophyseal primordium" BROAD [XAO:0000269] xref: BTO:0004224 xref: EHDAA2:0001929 xref: EMAPA:16263 -xref: FBbt:00000439 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000439 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:295846 xref: NCIT:C34306 xref: TAO:0001290 @@ -22085,7 +22103,7 @@ xref: BILA:0000082 xref: BTO:0000058 xref: CALOHA:TS-1293 xref: EFO:0000793 -xref: FBbt:00005055 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7152 xref: GAID:278 xref: galen:DigestiveSystem @@ -22172,7 +22190,7 @@ xref: EHDAA2:0001246 xref: EHDAA:826 xref: EMAPA:16469 xref: EV:0100162 -xref: FBbt:00005093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7157 xref: GAID:466 xref: MA:0000016 @@ -22234,7 +22252,7 @@ xref: EHDAA:828 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 -xref: FBbt:00005094 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005094 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:55675 xref: GAID:570 xref: MA:0000167 @@ -22284,7 +22302,7 @@ xref: EMAPA:16164 xref: EMAPA:16757 xref: FMA:293882 xref: MAT:0000069 -xref: MESH:D054259 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000069 xref: NCIT:C34226 xref: neuronames:1365 @@ -22320,7 +22338,7 @@ xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 -xref: FBbt:10000000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:10000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:62955 xref: HAO:0000000 xref: MA:0000001 @@ -22403,11 +22421,11 @@ xref: BTO:0000545 xref: EHDAA2:0000726 xref: EHDAA:518 xref: EMAPA:16247 -xref: FBbt:00003125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45615 xref: galen:AlimentaryTract xref: MA:0000917 -xref: MESH:D041981 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D041981 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34082 xref: TAO:0000112 xref: TGMA:0001819 @@ -22479,7 +22497,7 @@ xref: BILA:0000034 xref: BTO:0000174 xref: CALOHA:TS-2110 xref: EFO:0000461 -xref: FBbt:00004208 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004208 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69067 xref: GAID:407 xref: MESH:D004628 @@ -22528,10 +22546,10 @@ relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_developmental_contribution_from UBERON:0000926 {notes="check ctenophore"} ! mesoderm relationship: has_part UBERON:0000383 ! musculature of body relationship: has_part UBERON:0001434 ! skeletal system +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Anatomical system that provides locomotion and physical support to the organism.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010546", ontology="AAO", source="AAO:EJS"} property_value: has_relational_adjective "musculoskeletal" xsd:string property_value: homology_notes "There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001275", ontology="VHOG", source="DOI:10.1002/jez.b.21246 Shearman RM, Burke AC, The lateral somitic frontier in ontogeny and phylogeny. Journal of Experimental Zoology (2009)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0002328 @@ -22581,6 +22599,8 @@ relationship: part_of UBERON:0011137 ! axial skeletal system relationship: produces PR:000014841 ! sonic hedgehog protein relationship: ventral_to UBERON:0001049 ! neural tube property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from mesoderm (AAO:0000304) CHANGED TO: develops_from mesoderm (UBERON:0000926)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI property_value: development_notes "In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord." xsd:string property_value: external_definition "Avascular multi-tissue structure composed of large vacuolated epithelial cells (chordablasts) and perichordal fibrous tissue.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000032", ontology="VSAO", source="PSPUB:0000170"} @@ -22588,8 +22608,6 @@ property_value: external_definition "Rod-like principal supportive element of th property_value: external_definition "Slender rod of fibrous connective tissue surrounding a core of fluid-filled cells of mesodermal origin; it lies above the gut and directly beneath the spinal cord. The notochord is present during early development and in a few cases it is retained through life; however, usually the notochord is replaced by the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "notochordal" xsd:string property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (3) a stiff, longitudinal rod of turgid cells along the dorsal part of the body that is called a notochord (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000199", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002346 @@ -22612,7 +22630,7 @@ xref: EHDAA:1498 xref: EHDAA:255 xref: EMAPA:16073 xref: EV:0100004 -xref: FBbt:00001057 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:87657 xref: MAT:0000176 xref: MIAA:0000176 @@ -22717,9 +22735,9 @@ synonym: "wriggler" NARROW [Wikipedia:Larva] synonym: "zoea" NARROW [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000707 -xref: FBbt:00001727 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001727 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000459 -xref: MESH:D007814 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D007814 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0002048 xref: Wikipedia:Larva is_a: UBERON:0000468 ! multicellular organism @@ -22789,7 +22807,7 @@ xref: EHDAA:346 xref: EHDAA:902 xref: EMAPA:35593 xref: FMA:293879 -xref: MESH:D054258 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054258 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34225 xref: neuronames:1362 xref: RETIRED_EHDAA2:0001252 @@ -22822,9 +22840,9 @@ synonym: "chrysalis" NARROW [NCBITaxon:37572, Wikipedia:Pupa] synonym: "pupae" RELATED OMO:0003004 [] xref: BTO:0001143 xref: EFO:0002684 -xref: FBbt:00002953 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002953 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000886 -xref: MESH:D011679 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D011679 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Pupa is_a: UBERON:0000468 ! multicellular organism intersection_of: UBERON:0000468 ! multicellular organism @@ -22832,12 +22850,12 @@ intersection_of: existence_starts_and_ends_during UBERON:0000070 ! pupal stage relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage relationship: has_quality PATO:0001187 ! pupal relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: has_relational_adjective "pupal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 [Term] id: UBERON:0003914 @@ -22848,7 +22866,7 @@ def: "Epithelial tubes transport gases, liquids and cells from one site to anoth synonym: "epithelial or endothelial tube" EXACT [] xref: AEO:0000114 xref: EHDAA2:0003114 -xref: FBbt:00007474 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007474 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000025 ! tube is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium @@ -22874,6 +22892,7 @@ xref: EHDAA2:0003080 xref: FMA:242873 xref: SCTID:346902003 xref: Wikipedia:Foramen +is_a: CARO:0000010 ! anatomical boundary is_a: UBERON:0010000 ! multicellular anatomical structure intersection_of: UBERON:0010000 ! multicellular anatomical structure intersection_of: conduit_for UBERON:0000061 ! anatomical structure @@ -23057,7 +23076,7 @@ synonym: "trilaminar disk" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar germ" RELATED [https://orcid.org/0000-0002-6601-2165] xref: BILA:0000060 xref: BTO:0001403 -xref: FBbt:00005317 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005317 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:293108 xref: GAID:1302 xref: MESH:D005775 @@ -23144,7 +23163,7 @@ namespace: uberon def: "Anatomical structure that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "joint" NARROW [] -xref: FBbt:00005811 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0004770 ! articular system @@ -23160,7 +23179,7 @@ synonym: "gut section" RELATED [FBbt:00100315] synonym: "intestinal tract" RELATED [] synonym: "segment of intestinal tract" RELATED [] synonym: "subdivision of alimentary system" RELATED [FMA:71131] -xref: FBbt:00100315 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100315 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:71131 is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube @@ -23238,9 +23257,10 @@ synonym: "developmental tissue" RELATED [MIAA:0000019] xref: AEO:0000125 xref: CALOHA:TS-2122 xref: EHDAA2:0003125 -xref: FBbt:00007006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:292313 xref: MIAA:0000019 +is_a: CARO:0000003 ! anatomical structure is_a: UBERON:0000465 ! material anatomical entity relationship: capable_of GO:0032502 ! developmental process relationship: present_in_taxon NCBITaxon:33090 @@ -23651,7 +23671,7 @@ subset: common_anatomy subset: upper_level synonym: "multicellular structure" EXACT [FBbt:00100313] xref: CARO:0010000 -xref: FBbt:00100313 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100313 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: has_quality PATO:0001993 ! multicellular @@ -23710,7 +23730,7 @@ def: "A subdivision of an anatomical system." [http://orcid.org/0000-0002-6601-2 subset: common_anatomy subset: human_reference_atlas subset: upper_level -xref: FBbt:00007330 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007330 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67509 xref: SCTID:91690000 is_a: UBERON:0010000 {source="FBbt"} ! multicellular anatomical structure @@ -23948,9 +23968,9 @@ subset: life_stage synonym: "adulthood stage" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000113 ! post-juvenile adult stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/fbastian [Term] id: UBERON:0018378 @@ -23981,8 +24001,8 @@ def: "The stage of being no more dependent of the nest and/or from caregivers fo subset: life_stage is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000112 ! sexually immature stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034920 @@ -23994,8 +24014,8 @@ is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0007221 ! neonate stage relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0018685 ! nursing stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034921 @@ -26262,6 +26282,12 @@ property_value: example_of_usage "the surface of my skin is a 2D boundary of my is_a: mereotopologically_related_to ! mereotopologically related to inverse_of: has_2D_boundary ! has 2D boundary +[Typedef] +id: BSPO:0001102 +name: parallel to +namespace: spatial +def: "x is parallel t y iff x and y are lines or planes which when extended indefinitely do not cross." [BSPO:curators] + [Typedef] id: CEPH:0001007 name: homologous_to @@ -26286,6 +26312,7 @@ name: substage of namespace: relationship def: "A relation between a developmental stage and another, larger developmental stage during which it happens." [FBC:DPG] comment: Creating this relation as a temporary fix, pending adding the axiom occurrent_part_of subproperty of happens_during to RO. +is_transitive: true [Typedef] id: PORO:0000946 @@ -26412,6 +26439,13 @@ property_value: is_count_of UBERON:0010758 property_value: preceding_element_is BSPO:0000100 is_metadata_tag: true +[Typedef] +id: approximately_perpendicular_to +name: approximately perpendicular to +namespace: spatial +def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." [BSPO:cjm] +xref: BSPO:0000104 + [Typedef] id: attaches_to name: attached to @@ -27420,6 +27454,13 @@ namespace: uberon def: "Relationship between a fluid and a material entity, where the fluid is the output of a realization of a filtration role that inheres in the material entity." [] comment: Relationship between a fluid and a filtration barrier, where the portion of fluid arises as a transformation of another portion of fluid on the other side of the barrier, with larger particles removed +[Typedef] +id: finishes_axis +name: finishes axis +namespace: spatial +comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes axis x, and x has end point p, then x overlaps p +xref: BSPO:0015001 + [Typedef] id: fma_set_term name: fma_set_term @@ -28300,6 +28341,15 @@ name: layer part of namespace: uberon is_a: part_of ! part of +[Typedef] +id: left_of +name: left of +namespace: spatial +def: "Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left of Y <=> every instance x of X is left of some instance y of Y, and there exists some organism o such that x part of o and y part of o." [BSPO:cjm] +xref: BSPO:0000110 +is_transitive: true +inverse_of: right_of ! right of + [Typedef] id: located_in name: located in @@ -28468,6 +28518,13 @@ property_value: example_of_usage "lactation SubClassOf 'only in taxon' some 'Mam property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_a: in_taxon ! in taxon +[Typedef] +id: orthogonal_to +name: orthogonal to +namespace: spatial +def: "crossing at right angles" [BSPO:cjm] +xref: BSPO:0015005 + [Typedef] id: output_of name: output of @@ -28562,6 +28619,13 @@ domain: BFO:0000002 ! continuant range: BFO:0000003 ! occurrent inverse_of: has_participant ! has participant +[Typedef] +id: passes_through +name: passes through +namespace: spatial +def: "Intersects at two points." [BSPO:cjm] +xref: BSPO:0015006 + [Typedef] id: phalanx_number name: phalanx number @@ -29086,6 +29150,14 @@ property_value: preceding_element_is BSPO:0000096 property_value: taxon_notes "In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals." xsd:string is_metadata_tag: true +[Typedef] +id: right_of +name: right of +namespace: spatial +def: "Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left of Y <=> every instance x of X is right of some instance y of Y, and there exists some organism o such that x part of o and y part of o." [BSPO:cjm] +xref: BSPO:0000111 +is_transitive: true + [Typedef] id: role_of name: role of @@ -29215,6 +29287,13 @@ is_a: part_of ! part of is_a: temporally_related_to ! temporally related to inverse_of: starts_with ! starts with +[Typedef] +id: starts_axis +name: starts axis +namespace: spatial +comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts axis x, and x has start point p, then x overlaps p +xref: BSPO:0015007 + [Typedef] id: starts_with name: starts with diff --git a/uberon-base.owl b/uberon-base.owl index 556ae06d5..ec5399a0a 100755 --- a/uberon-base.owl +++ b/uberon-base.owl @@ -15,7 +15,7 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -179,7 +179,7 @@ ZFA part_of NCBITaxon:7954 ZFS part_of NCBITaxon:7954 Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found. - 2024-05-13 + 2024-07-02 http://uberon.org @@ -911,6 +911,7 @@ brain name abbreviations (drosophila) + @@ -919,6 +920,7 @@ preferred term in the context of comparative anatomy + @@ -927,6 +929,7 @@ A historic synonym, no longer encouraged + @@ -935,6 +938,7 @@ developmental term + @@ -943,6 +947,7 @@ a synonym made on the basis of a possibly homologous structure in another species + @@ -951,6 +956,7 @@ preferred term when talking about an instance of this class in Homo sapiens + @@ -959,6 +965,7 @@ indicates that a synonym is used in an inconsistent or confusing way, typically between species + @@ -967,6 +974,7 @@ a mis-spelling that is in common use and thus recorded + @@ -975,6 +983,7 @@ synonym that is inappropriate for amniotes + @@ -983,6 +992,7 @@ synonym that is inappropriate for mammals + @@ -991,6 +1001,7 @@ expert consultation and attribution required + @@ -999,6 +1010,7 @@ taxonomic disambiguation + @@ -1007,6 +1019,7 @@ a systematic synonym used as the base name for design patterns + @@ -1015,6 +1028,7 @@ Classes tagged with this subset property were added upon request from the Human Cell Atlas (HCA). + @@ -1023,6 +1037,7 @@ Terms applicable across life, not restricted to Metazoa + @@ -1031,6 +1046,7 @@ CUMBO + @@ -1039,6 +1055,7 @@ cyclostome structures + @@ -1047,6 +1064,7 @@ brain region defined by cyto-architecture + @@ -1055,6 +1073,7 @@ classes that are defined by relative position counting from first in a series of elements along an axis in an individual organism rather than by strict homology + @@ -1063,6 +1082,7 @@ developmental_classification + @@ -1071,6 +1091,7 @@ Indicates that subclasses in AOs may be inappropriately linked + @@ -1079,6 +1100,7 @@ A class that represents an early developmental structure, like a blastocyst. This part of the ontology is undergoing review to remove inappropriate grouping classes. + @@ -1087,6 +1109,7 @@ EFO slim + @@ -1095,6 +1118,7 @@ derived from the union of EHDAA2 and EMAPA - still to be checked + @@ -1103,6 +1127,7 @@ subset of classes that have logical defs text defs and synonyms aligned with FEED + @@ -1111,6 +1136,7 @@ functional_classification + @@ -1119,6 +1145,7 @@ Subset consisting of classes creating for grouping purposes + @@ -1139,6 +1166,7 @@ A grouping class that depends on an assumption of homology between subclasses + @@ -1147,6 +1175,7 @@ + @@ -1155,6 +1184,7 @@ classes that have some inconsistency with FMA + @@ -1163,6 +1193,7 @@ + @@ -1171,6 +1202,7 @@ somewhat fuzzy grouping for analysis purposes, currently composed of something like: liver, heart, skeletal, kidney, bladder, brain, skin, mouth, esophagus, stomach, small intestine, large intestines, trachea nose, lungs, brain, spinal cord, peripheral nerves, kidneys, ureters, bladder, urethra, gonads + @@ -1179,6 +1211,7 @@ core classes typically found across metazoa. one purpose is to create a rough set of terms that could be used to start a new metazoan AO. Note this subset is not yet fully fleshed out + @@ -1187,6 +1220,7 @@ abstract class brought in to group ontology classes but not informative + @@ -1195,6 +1229,7 @@ organs, excluding individual muscles and skeletal elements + @@ -1203,6 +1238,7 @@ Phenotype slim + @@ -1211,6 +1247,7 @@ A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA + @@ -1219,6 +1256,7 @@ Uberon slim - subset that excludes obscure terms and deep compositional terms + @@ -1227,6 +1265,7 @@ Indicates that the class encompasses classes from other AOs that have not been verified + @@ -1235,6 +1274,7 @@ abstract upper-level terms not directly useful for analysis + @@ -1243,6 +1283,7 @@ core classes typically found across vertebrates. one purpose is to create a rough set of terms that could be used to start a new vertebrate AO + @@ -1331,6 +1372,18 @@ + + + + + + + + + + + + @@ -2481,6 +2534,18 @@ + + + + + + + + + + + + @@ -2514,6 +2579,8 @@ + + carries uberon channel_for @@ -2525,6 +2592,7 @@ + uberon channels_from channels_from @@ -2535,6 +2603,7 @@ + uberon channels_into channels_into @@ -2548,6 +2617,7 @@ + x distally_connected_to y iff the distal part of x is connected to y. i.e. x connected_to y and x proximal_to y. uberon distally_connected_to @@ -2566,6 +2636,7 @@ + X extends_fibers into Y iff there exists some neuron (N) and N has_soma_location X and N 'has synaptic IO in region' some Y uberon extends_fibers_into @@ -2627,6 +2698,7 @@ + @@ -2737,6 +2809,7 @@ + uberon transitively_anteriorly_connected_to transitively anteriorly connected to @@ -2748,6 +2821,7 @@ + uberon transitively_connected_to transitively_connected to @@ -2758,6 +2832,7 @@ + uberon transitively_distally_connected_to transitively distally connected to @@ -2769,6 +2844,7 @@ + uberon transitively_proximally_connected_to transitively proximally connected to @@ -20191,7 +20267,7 @@ - UBERON:0000965 + 2009-04-18T01:37:39Z uberon UBERON:0000208 @@ -23178,8 +23254,8 @@ BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell - BTO:0000895 - FMA:73417 + + myelinated plasma membrane of Schwann cell uberon UBERON:0000346 @@ -24057,10 +24133,10 @@ - UBERON:0004757 - UBERON:0004758 - UBERON:0004759 - UBERON:0004760 + + + + uberon UBERON:0000360 obsolete rectal gland @@ -24399,7 +24475,7 @@ - FMA:76787 + BTO:0001192 Rootlets Rootlets set @@ -25886,8 +25962,8 @@ - EFO:0001015 - FMA:75430 + + BTO:0001400 uberon UBERON:0000380 @@ -26231,8 +26307,8 @@ - FMA:71613 - HAO:0000449 + + BTO:0001548 Labial glands Labial glands set @@ -28568,7 +28644,7 @@ - NCIT:C38575 + uberon UBERON:0000427 obsolete cytotrophoblastic cell @@ -29111,6 +29187,7 @@ Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area. + LTu BAMS:LTu BIRNLEX:1206 @@ -29131,6 +29208,7 @@ nucleus tuberis hypothalami nucleus tuberis lateralis UBERON:0000435 + The lateral tuberal nucleus is specific to humans and higher primates, however, this term is sometimes used loosely. If using for rodents, please use tuberal nucleus (sensu Rodentia) instead. If refering to the nucleus lateralis tuberis of fish, please use nucleus lateralis tuberis system (sensu Teleostei) lateral tuberal nucleus @@ -29276,7 +29354,7 @@ - FMA:77761 + Arachnoid trabeculae set trabeculae arachnoideae uberon @@ -29830,11 +29908,11 @@ - CL:2000002 - BTO:0002770 - FMA:86480 - NCIT:C32429 - UMLS:C1511740 + + + + + Wikipedia:Decidual_cells uberon UBERON:0000449 @@ -29844,7 +29922,7 @@ - UMLS:C1511740 + ncithesaurus:Decidual_Cell @@ -31104,18 +31182,18 @@ Anatomical structure that is a direct part of the cell. TODO - move metadata to GO and obsolete this class once homes have been found for existing children. Note the inconsistency between the usage of the label 'cell component' in GO and CARO - AAO:0010271 - BILA:0000014 - CARO:0000014 - FBbt:00007012 - FMA:86454 - GO:0044464 - HAO:0000014 - NCIT:C34070 - NIF_Subcellular:sao-1337158144 - OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA - TGMA:0001834 - UMLS:C1178969 + + + + + + + + + + + + uberon cell component UBERON:0000470 @@ -31133,7 +31211,7 @@ - UMLS:C1178969 + ncithesaurus:Cell_Part @@ -33553,10 +33631,10 @@ - FBbt:00000021 - HAO:0000016 - SPD:0000055 - UBERON:0002417 + + + + segment of abdomen uberon UBERON:0000917 @@ -33576,12 +33654,12 @@ The nutritive substance contained in the egg. - BTO:0000371 - FBbt:00000035 - GO:0060417 - UBERON:0007378 - XAO:0000281 - ZFA:0000084 + + + + + + vegetal yolk mass MAT:0000335 MIAA:0000335 @@ -33603,9 +33681,9 @@ - GO:0005811 - FMA:62962 - GO:0005811 + + + uberon UBERON:0000919 obsolete lipid droplet @@ -33682,10 +33760,10 @@ It is the nucleus of a sperm or an egg cell during the process of fertilization. - GO:0045120 - FBbt:00000048 - FMA:84673 - GO:0045120 + + + + Wikipedia:Pronucleus uberon UBERON:0000921 @@ -34295,9 +34373,9 @@ - FBbt:00000154 - MAT:0000244 - MIAA:0000244 + + + segment - embryonic uberon UBERON:0000928 @@ -34687,8 +34765,8 @@ - FBbt:00000482 - WBbt:0005814 + + uberon UBERON:0000932 originally unified on basis of terminological similarity @@ -35192,8 +35270,8 @@ - FBbt:00001135 - ZFA:0000068 + + uberon proneural clusters UBERON:0000937 @@ -35512,6 +35590,7 @@ The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]. + FMA:52638 NCIT:C32638 SCTID:280219004 @@ -35521,6 +35600,7 @@ uberon nervus frontalis UBERON:0000942 + frontal nerve (branch of ophthalmic) http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png @@ -35566,8 +35646,8 @@ - FBbt:00002721 - WBbt:0005107 + + uberon UBERON:0000943 obsolete labial sensillum @@ -35579,8 +35659,8 @@ - FBbt:00003051 - FMA:76733 + + dorsal vein ramus dorsalis uberon @@ -36440,8 +36520,8 @@ - UBERON:0011144 - UBERON:0011145 + + uberon UBERON:0000952 obsoleted as it conflated a generic functional grouping with a specific group of muscles in the leg/hip @@ -36477,8 +36557,8 @@ Intestinal muscle cell, attach to intestine and body wall anterior to anus. - FBbt:00003537 - WBbt:0005796 + + intestinal muscle uberon UBERON:0000954 @@ -37158,9 +37238,9 @@ OBSOLETE. Original definition: The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]. - FBbt:00004021 - FMA:77524 - WBbt:0005441 + + + Wikipedia:Pharyngeal_nerve uberon UBERON:0000960 @@ -37294,6 +37374,7 @@ The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]. + BAMS:cern FMA:5859 NCIT:C32299 @@ -37308,6 +37389,7 @@ nervus cervicalis uberon UBERON:0000962 + Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] nerve of cervical vertebra @@ -37853,9 +37935,9 @@ - FBbt:00004245 - MAT:0000205 - MIAA:0000205 + + + arthropod sensillum of thorax sensillum of thorax thoracic sensillum @@ -37896,9 +37978,9 @@ - FBbt:00004461 - MAT:0000206 - MIAA:0000206 + + + abdomen arthropod sensillum abdomen sensillum abdominal sensillum @@ -41850,10 +41932,10 @@ OBSOLETE: The mostly slit-like opening on the body surface through which air is taken into the respiratory system. - FBbt:00005054 - HAO:0000950 - TGMA:0000578 - UBERON:0010019 + + + + EFO:0000936 MAT:0000208 MIAA:0000208 @@ -42622,7 +42704,7 @@ - UBERON:0003917 + fat pad uberon UBERON:0001014 @@ -43423,10 +43505,10 @@ - FBbt:00005107 - FMA:67301 - GO:0043025 - NIF_Subcellular:sao1044911821 + + + + uberon UBERON:0001022 obsolete cell body @@ -43440,16 +43522,16 @@ The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones. dendritic - FBbt:00005110 - FMA:67314 - GAID:749 - GO:0030425 - MESH:A08.663.256 - NCIT:C32447 - NIF_Subcellular:sao1211023249 - OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA - TGMA:0001373 - UMLS:C0011305 + + + + + + + + + + Wikipedia:Dendrite uberon UBERON:0001023 @@ -43472,12 +43554,12 @@ One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite. - FBbt:00005113 - FMA:61814 - GAID:751 - GO:0043005 - MESH:A08.663.256.500 - NIF_Subcellular:sao-867568886 + + + + + + Wikipedia:Neurite uberon UBERON:0001024 @@ -43501,15 +43583,15 @@ The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.). synaptic - FBbt:00005114 - FMA:67408 - GAID:766 - GO:0045202 - MESH:A08.850 - NCIT:C13281 - NIF_Subcellular:sao914572699 - SCTID:362298009 - UMLS:C0039062 + + + + + + + + + Wikipedia:Synapse synaptic junction uberon @@ -43533,7 +43615,7 @@ A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]. - UBERON:0006798 + Wikipedia:Motor_nerve nervus motorius uberon @@ -43697,12 +43779,12 @@ - GO:0031594 - FBbt:00005142 - FMA:61803 - GAID:809 - MESH:D009469 - NIF_Subcellular:sao1124888485 + + + + + + Wikipedia:Neuromuscular_junction uberon junctio neuromuscularis @@ -43732,10 +43814,10 @@ - FBbt:00005143 - FMA:67107 - GO:0048788 - NIF_Subcellular:sao1884931180 + + + + ribbon synapse uberon UBERON:0001030 @@ -44056,10 +44138,10 @@ Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous. - CL:0000210 - FBbt:00005162 - FMA:85613 - GAID:778 + + + + BTO:0001060 Wikipedia:Photoreceptor uberon @@ -45397,8 +45479,8 @@ - FMA:85574 - UBERON:0002081 + + uberon UBERON:0001050 obsoleted because 'atrium' as a general grouping class that encompasses the cardiac atrium and atrium of alveolus atrium is of questionable value. Furthermore, the use of the term 'atrium' in the generic sense is misleading, as this is commonly used to refer specifically to the cardiac atrium @@ -45759,8 +45841,8 @@ - UBERON:0000056 - UBERON:0000057 + + uberon UBERON:0001055 obsolete ureter @@ -47047,7 +47129,6 @@ XAO:0000388 galen:InferiorVenaCava inferior caval vein - inferior vena cava posterior vena cava uberon caudal vena cava @@ -47057,7 +47138,7 @@ - posterior vena cava + inferior vena cava http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray577.png @@ -47101,17 +47182,11 @@ inferior caval vein http://orcid.org/0000-0002-6601-2165 - - - - inferior vena cava - Wikipedia:Venae_cavae - posterior vena cava - Wikipedia:Venae_cavae + PMID:21154280 @@ -47208,14 +47283,14 @@ - + - + @@ -47256,11 +47331,11 @@ pericardial cavity - + - + @@ -47273,13 +47348,13 @@ - + FMA - + Wikipedia @@ -47973,7 +48048,7 @@ - + @@ -48005,14 +48080,14 @@ endocardium of ventricle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -48150,7 +48225,7 @@ - + @@ -48178,14 +48253,14 @@ myocardium of ventricle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -48386,8 +48461,8 @@ - UBERON:0010996 - UBERON:0011002 + + uberon UBERON:0001086 obsoleted as it conflated two distinct classes @@ -48666,9 +48741,9 @@ - - - + + + Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food. @@ -48711,34 +48786,34 @@ calcareous tooth http://upload.wikimedia.org/wikipedia/commons/1/14/Teeth_by_David_Shankbone.jpg - + - + - + - + XAO-modified - + ZFA-modified - + cjm @@ -48901,7 +48976,7 @@ - + The second vertebral bone in the vertebral column. Vertebra that is posteriorly adjacent to vertebra 1.[TAO] @@ -48937,14 +49012,14 @@ vertebral bone 2 - + - + FMA @@ -49474,8 +49549,8 @@ - - + + The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]. EHDAA2:0001425 @@ -49501,11 +49576,11 @@ pectoralis minor https://upload.wikimedia.org/wikipedia/commons/5/5d/Pectoralis_minor.png - + - + @@ -49518,14 +49593,14 @@ - + third to fifth ribs near their costal cartilages dbpedia - + medial border and superior surface of the coracoid process of the scapula dbpedia @@ -49567,7 +49642,7 @@ - + The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]. Vein which collects blood from the muscles of the head and tongue and the thyroid gland.[AAO] @@ -49593,14 +49668,14 @@ external jugular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -49740,8 +49815,8 @@ - - + + A thin musculomebranous barrier that separates the abdominal and thoracic cavities. Often used for breathing control. The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]. @@ -49781,24 +49856,24 @@ diaphragm - + - + - + PMID:23586979 - + definitional @@ -49860,8 +49935,8 @@ - - + + The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]. @@ -49881,24 +49956,24 @@ anterior jugular vein http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png - + - + - + Wikipedia - + FMA Wikipedia @@ -49948,8 +50023,8 @@ - - + + A paired dermal or endochondral bone that is part of the pectoral girdle. The clavicle may be in contact with the interclavicle or coracoid and forms an attachment site for pectoral musculature. [PHENOSCAPE:ad]. Slender, paired bones of intramembranous origin that invest the anterior margins of the procoracoids.[AAO] @@ -49985,11 +50060,11 @@ clavicle bone https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg - + - + @@ -50002,14 +50077,14 @@ - + mah ISBN:978-0-12-319060-4 - + from secondary cartilage of fusion ISBN:978-0-12-319060-4 @@ -50085,8 +50160,8 @@ - - + + A superficial vein of the upper limb that communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,modified]. EMAPA:25075 @@ -50107,24 +50182,24 @@ cephalic vein http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png - + - + - + FMA/obol - + FMA/obol @@ -50161,9 +50236,9 @@ - - - + + + The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]. The sternohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the sternum.[FEED] @@ -50190,15 +50265,15 @@ sternohyoid muscle https://upload.wikimedia.org/wikipedia/commons/6/67/Sternohyoid_muscle.PNG - + - + - + @@ -50211,21 +50286,21 @@ - + inferred dbpedia - + manubrium of sternum dbpedia - + dbpedia @@ -50293,8 +50368,8 @@ - - + + The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]. The omohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the hyoid appratus and the scapula.[FEED] @@ -50317,11 +50392,11 @@ omohyoid muscle http://upload.wikimedia.org/wikipedia/commons/b/b0/Gray1210.png - + - + @@ -50334,14 +50409,14 @@ - + inferred dbpedia - + dbpedia @@ -50396,9 +50471,9 @@ - - - + + + The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]. The sternothyroid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by the cervical plexus; it attaches to the thyroid cartilage and the sternum.[FEED] @@ -50423,15 +50498,15 @@ sternothyroid muscle http://upload.wikimedia.org/wikipedia/commons/1/10/Sternothyroideus.png - + - + - + @@ -50444,20 +50519,20 @@ - + inferred dbpedia - + dbpedia - + dbpedia @@ -50519,9 +50594,9 @@ - - - + + + The thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]. The thyrohyoid is a somitic muscle that participates in oral/pharyngeal behaviors and is innervated by C1 and Cranial Nerve XII ; it attaches to the thyroid cartilage and the hyoid apparatus.[FEED] @@ -50544,15 +50619,15 @@ thyrohyoid muscle https://upload.wikimedia.org/wikipedia/commons/a/aa/Thyrohyoid_muscle.PNG - + - + - + @@ -50565,21 +50640,21 @@ - + first cervical nerve via hypoglossal nerve dbpedia - + first cervical nerve via hypoglossal nerve dbpedia - + dbpedia @@ -50647,8 +50722,8 @@ - - + + @@ -50660,10 +50735,10 @@ - - - - + + + + The respiratory muscles that arise from the lower border of one rib and insert into the upper border of the adjoining rib. Inspiration by active expansion of the thorax evolved later, in the ancestor of reptiles, birds, and mammals. This was powered originally by the intercostal muscles (as in lizards or crocodilians) and later (in mammals only) by a muscular diaphragm.[well established][VHOG] BTO:0005281 @@ -50693,45 +50768,45 @@ intercostal muscle http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + - + - + - + dbpedia - + EHDAA2 - + ribs 1-11 dbpedia - + ribs 2-12 dbpedia @@ -50776,18 +50851,18 @@ - - + + - - - - + + + + The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]. In humans it inserts along a roughened line deep in the groove. In other mammals (most, I believe) it is an actual projection, the latissimus dorsi process [FEED:rd] [https://github.com/obophenotype/uberon/issues/1192] @@ -50817,66 +50892,66 @@ latissimus dorsi muscle https://upload.wikimedia.org/wikipedia/commons/7/7d/Latissimus_dorsi.png - + - + - + - + - + - + - + EHDAA2 - + EHDAA2 - + spinous processes of thoracic T7-T12 thoracolumbar fascia iliac crest and inferior 3 or 4 ribs inferior angle of scapula dbpedia - + floor of intertubercular groove of the humerus dbpedia - + dbpedia - + dbpedia @@ -51197,7 +51272,7 @@ - + The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]. Check left vs right in mouse and human The portion of the right lobe of the liver between the fissure of the ligamentum venosum and the bare area of the liver. It ends into the superior recess of the lesser peritoneal sac. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG] @@ -51235,7 +51310,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - + @@ -51248,7 +51323,7 @@ - + FMA @@ -51351,7 +51426,7 @@ - + A lobe of tissue that is part of a thyroid gland. Thus, a thyroid capable of forming iodotyrosines and iodothyronines is present in all vertebrates. (...) Certain morphologic changes occur after the biochemical evolution of the thyroid has ceased. In the adult lamprey and in most bony fishes, the gland is not encapsulated. (...) In cartilaginous fish, the thyroid is encapsulated. In the higher vertebrate forms, the thyroid is a one- or two-lobed encapsulated structure.[well established][VHOG] EHDAA2:0002032 @@ -51374,14 +51449,14 @@ lobe of thyroid gland http://upload.wikimedia.org/wikipedia/commons/9/9e/Gray1174.png - + - + FMA-abduced-lr @@ -51557,9 +51632,9 @@ - - - + + + The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]. EMAPA:37654 FMA:13370 @@ -51579,35 +51654,35 @@ longus colli muscle https://upload.wikimedia.org/wikipedia/commons/a/a6/Longus_colli.png - + - + - + - + FMA-modified - + Transverse processes of C-5 to T-3 dbpedia - + dbpedia @@ -51661,9 +51736,9 @@ - - - + + + The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]. EMAPA:37738 @@ -51685,35 +51760,35 @@ scalenus medius https://upload.wikimedia.org/wikipedia/commons/f/fa/Scalenus_medius.png - + - + - + - + Ventral rami of the third to eighth cervical spinal nerves dbpedia - + dbpedia - + dbpedia @@ -51756,7 +51831,7 @@ - + The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the serratus ventralis. It is occasionally blended with the Scalenus medius. [WP,unvetted]. EMAPA:37737 @@ -51777,14 +51852,14 @@ scalenus posterior https://upload.wikimedia.org/wikipedia/commons/f/f3/Scalenus_posterior.png - + - + transverse processes of C4 - C6 dbpedia @@ -51845,11 +51920,11 @@ - - - - - + + + + + The serratus ventralis is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]. EHDAA2:0001832 @@ -51876,57 +51951,57 @@ serratus ventralis https://upload.wikimedia.org/wikipedia/commons/c/c6/Serratus_anterior.png - + - + - + - + - + - + long thoracic nerve dbpedia - + EHDAA2 - + fleshy slips from the outer surface of upper 8 or 9 ribs dbpedia - + costal aspect of medial margin of the scapula dbpedia - + dbpedia @@ -51975,7 +52050,7 @@ - + The serratus dorsalis superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]. EMAPA:37698 FMA:13401 @@ -51994,7 +52069,7 @@ serratus dorsalis superior muscle - + @@ -52007,7 +52082,7 @@ - + C7 thru T3 in human dbpedia @@ -52054,7 +52129,7 @@ - + A muscle that originates from the vertebrae and inserts in the ribs. EMAPA:37697 FMA:13402 @@ -52075,7 +52150,7 @@ serratus dorsalis inferior muscle https://upload.wikimedia.org/wikipedia/commons/a/aa/Serratus_posterior.PNG - + @@ -52088,7 +52163,7 @@ - + T11 through L2 in human dbpedia @@ -52137,14 +52212,14 @@ - + - + A paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]. TODO: sternocleidomastoid = sternomastoid + Cleidomastoideus. Origin: from manubrium sterni (sterno) and clavicle (cleido) and it's insertion at the mastoid process of the temporal bone. @@ -52183,25 +52258,25 @@ http://upload.wikimedia.org/wikipedia/commons/6/61/Gray512.png http://upload.wikimedia.org/wikipedia/commons/f/f9/Gray512.svg - + - + - + sensory: cervical plexus dbpedia - + manubrium sterni medial portion of the clavicle dbpedia @@ -52322,8 +52397,8 @@ - - + + @@ -52336,7 +52411,7 @@ - + The subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]. EHDAA2:0001943 @@ -52361,34 +52436,34 @@ http://upload.wikimedia.org/wikipedia/commons/f/f2/Gray411.png - + - + - + - + Wikipedia - + EHDAA2 - + lesser tubercle of humerus dbpedia @@ -52442,7 +52517,7 @@ - + @@ -52508,14 +52583,14 @@ vertebral column - + - + cjm @@ -52701,14 +52776,14 @@ - + - + The parathyroid gland is an endocrine gland for secretion of parathyroid hormone, usually found as a pair, embedded in the connective tissue capsule on the posterior surface of the thyroid gland. Parathyroid regulates calcium and phosphorous metabolism. Any one of several small structures, usually four, attached to the dorsal surfaces of the lateral lobes of the thyroid gland. [TFD][VHOG] Either of the two pairs of small, spherical, encapsulated glands which develop from ventral growths of the third and fourth pharyngeal pouches and are closely associated with the external jugular veins. Calcitonin and parathyroid hormone are secreted by these glands.[AAO] @@ -52744,24 +52819,24 @@ parathyroid gland - + - + - + PMID:16313389 - + Wikipedia @@ -53322,7 +53397,7 @@ - + Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum[FMA]. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). AEO:0000111 BTO:0002422 @@ -53347,14 +53422,14 @@ mesothelium http://upload.wikimedia.org/wikipedia/commons/2/25/Mesothelium_peritoneal_wash_high_mag.jpg - + - + FMA @@ -53469,7 +53544,7 @@ - + In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. BTO:0002783 @@ -53492,14 +53567,14 @@ superior mesenteric vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - + - + Wikipedia:Vitelline_vein @@ -53535,7 +53610,7 @@ - + A vein that drains the pelvis and lower limbs into the inferior vena cava. In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. @@ -53558,7 +53633,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif - + @@ -53571,7 +53646,7 @@ - + FMA-abduced-lr @@ -53868,7 +53943,7 @@ - + Vein that carries blood away from the liver[ZFA]. todo - add developmental relationships for other taxa @@ -53899,14 +53974,14 @@ hepatic vein http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png - + - + FMA-abduced-lr @@ -54499,8 +54574,8 @@ - - + + The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]. Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG] @@ -54526,24 +54601,24 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb - + - + - + FMA - + EHDAA2 @@ -54621,7 +54696,7 @@ - + @@ -54657,7 +54732,7 @@ http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png - + @@ -54670,7 +54745,7 @@ - + EHDAA2 @@ -54718,15 +54793,15 @@ - - + + - + @@ -54777,34 +54852,34 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - + - + - + - + EHDAA2 - + Wikipedia - + Wikipedia @@ -54894,8 +54969,8 @@ - - + + A blind-ended tube connected to the cecum, from which it develops embryologically[WP]. @@ -54940,24 +55015,24 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - + - + - + http://orcid.org/0000-0002-1572-1316 - + Wikipedia @@ -55023,7 +55098,7 @@ - + @@ -55078,7 +55153,7 @@ colon - + @@ -55092,7 +55167,7 @@ - + FMA @@ -55157,7 +55232,7 @@ - + Section of colon which is distal to the cecum and proximal to the transversecolon.[FMA,modified]. in MA, this is a subclass of colon @@ -55187,7 +55262,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - + @@ -55200,7 +55275,7 @@ - + Wikipedia @@ -55257,7 +55332,7 @@ - + The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon[BTO,modified]. BTO:0000272 @@ -55285,7 +55360,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - + @@ -55298,7 +55373,7 @@ - + Wikipedia @@ -55342,7 +55417,7 @@ - + The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon. BTO:0000641 @@ -55370,7 +55445,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - + @@ -55383,7 +55458,7 @@ - + Wikipedia @@ -55426,7 +55501,7 @@ - + The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity. BTO:0000645 @@ -55458,7 +55533,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - + @@ -55471,7 +55546,7 @@ - + Wikipedia @@ -55714,7 +55789,7 @@ - + @@ -55751,14 +55826,14 @@ cardia of stomach https://upload.wikimedia.org/wikipedia/commons/3/33/Illu_stomach.jpg - + - + ISBN:0073040584 @@ -55914,7 +55989,7 @@ - + @@ -55968,7 +56043,7 @@ pyloric antrum http://upload.wikimedia.org/wikipedia/commons/3/31/Gray1046.svg - + @@ -55981,7 +56056,7 @@ - + Wikipedia @@ -56484,7 +56559,7 @@ - + @@ -56501,7 +56576,7 @@ portal lobule - + @@ -56514,7 +56589,7 @@ - + MA MP @@ -56538,7 +56613,7 @@ - + @@ -56564,14 +56639,14 @@ UBERON:0001172 hepatic acinus - + - + cjm @@ -56806,10 +56881,10 @@ - - - - + + + + @@ -56838,19 +56913,19 @@ common hepatic duct http://upload.wikimedia.org/wikipedia/commons/4/48/Illu_liver_gallbladder.jpg - + - + - + - + @@ -56863,25 +56938,25 @@ - + MA - + Wikipedia - + Wikipedia - + definitional @@ -57144,7 +57219,7 @@ - + @@ -57186,14 +57261,14 @@ peritoneal cavity - + - + Wikipedia @@ -57252,8 +57327,8 @@ - - + + classified as a cavity in EHDAA2, organ segment in FMA. We hedge and use a union UBERON:0006299 EHDAA2:0001958 @@ -57272,24 +57347,24 @@ UBERON:0001180 superior recess of lesser sac - + - + - + EMAPA - + EHDAA2 @@ -60180,14 +60255,14 @@ - + - + The protruding lymphoid tissue located on the mucosa of the intestine that is composed of densely packed B cell follicles. Reptiles have accumulations of lymphocytes in their guts that may be primitive Peyer's patches (Zapata and Solas). @@ -60215,11 +60290,11 @@ Peyer's patch - + - + @@ -60233,13 +60308,13 @@ - + EDITOR_NOTE check this - + PMID:PMID:20181529 @@ -60318,8 +60393,8 @@ - - + + A compound tubular submucosal gland found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]. currently defined as equivalent to any submucosal gland in the duodenum. Said to be absent outside mammlian (Andrew 1959) but Ziswiler and Farner (1972) noted similar glands at the gastroduodenal junction of some birds @@ -60345,11 +60420,11 @@ duodenal gland - + - + @@ -60362,13 +60437,13 @@ - + FMA, modified - + unclear for Aves ISBN:9780521617147 @@ -60423,7 +60498,7 @@ - + @@ -60469,7 +60544,7 @@ intestinal villus http://upload.wikimedia.org/wikipedia/commons/3/38/Small_intestine_low_mag.jpg - + @@ -60482,7 +60557,7 @@ - + ZFA @@ -60578,7 +60653,7 @@ - + The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]. see also MA:0002165 ! lieno-pancreatic vein @@ -60596,14 +60671,14 @@ pancreatic tributary of splenic vein - + - + FMA/obol @@ -60654,7 +60729,7 @@ - + A blood vessel that drains blood from the large intestine that usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]. BTO:0002782 @@ -60678,14 +60753,14 @@ http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - + - + FMA/obol @@ -60737,7 +60812,7 @@ - + A tributary of the superior mesenteric vein that drains the jejunum. EMAPA:37160 @@ -60751,7 +60826,7 @@ jejunal vein http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png - + @@ -60764,7 +60839,7 @@ - + FMA/obol @@ -60817,7 +60892,7 @@ - + The veins that drain blood from the ileum into the superior mesenteric vein. EMAPA:37149 @@ -60831,14 +60906,14 @@ ileal vein - + - + FMA Wikipedia @@ -61025,9 +61100,9 @@ - - - + + + An abdominal muscle that inserts on the last rib and transverse processes of lumbar vertebrae. It is irregular and quadrilateral in shape, and broader below than above. EMAPA:18524 FMA:15569 @@ -61043,36 +61118,36 @@ quadratus lumborum http://upload.wikimedia.org/wikipedia/commons/d/de/Gray1124.png - + - + - + - + Last rib and transverse processes of lumbar vertebrae dbpedia - + Last rib and transverse processes of lumbar vertebrae dbpedia - + Last rib and transverse processes of lumbar vertebrae dbpedia @@ -61116,7 +61191,7 @@ - + The lateral abdominal wall muscle that is deep to the internal oblique. One of a pair of transverse abdominal muscles that is the anterolateral muscle of the abdomen, lying immediately under the internal abdominal oblique. [TFD][VHOG] @@ -61153,7 +61228,7 @@ transversus abdominis muscle http://upload.wikimedia.org/wikipedia/commons/3/32/Illu_trunk_muscles.jpg - + @@ -61166,7 +61241,7 @@ - + dbpedia @@ -61409,14 +61484,14 @@ - + - + @@ -61468,24 +61543,24 @@ renal pelvis https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg - + - + - + MA - + FMA @@ -61531,7 +61606,7 @@ - + @@ -61568,14 +61643,14 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg - + - + FMA @@ -61765,7 +61840,7 @@ - + @@ -61813,14 +61888,14 @@ renal corpuscle https://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg - + - + MA ZFA @@ -61921,7 +61996,7 @@ - + @@ -61967,14 +62042,14 @@ glomerular capsule http://upload.wikimedia.org/wikipedia/commons/3/30/Gray1130.svg - + - + Wikipedia @@ -62073,11 +62148,11 @@ - + - - + + @@ -62116,7 +62191,7 @@ nephron tubule - + @@ -62125,18 +62200,18 @@ - + - + - + GO MA ZFA @@ -62150,13 +62225,13 @@ - + ZFA - + checkme @@ -62197,7 +62272,7 @@ - + @@ -62245,14 +62320,14 @@ collecting duct of renal tubule - + - + checkme GO @@ -62602,9 +62677,9 @@ - - - + + + @@ -62647,34 +62722,34 @@ adrenal medulla http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png - + - + - + - + FMA - + FMA - + Wikipedia @@ -63752,7 +63827,7 @@ - + @@ -63784,7 +63859,7 @@ interlobular bile duct - + @@ -63798,7 +63873,7 @@ - + FMA MA MP @@ -63844,7 +63919,7 @@ - + @@ -63879,14 +63954,14 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - + - + MA @@ -64023,8 +64098,8 @@ - - + + @@ -64059,25 +64134,25 @@ spleen lymphoid follicle - + - + - + CL:tm MA - + FMA @@ -64322,7 +64397,7 @@ - + An adventitia that is part of a ureter. EMAPA:28114 FMA:15892 @@ -64338,14 +64413,14 @@ UBERON:0001252 adventitia of ureter - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -64389,7 +64464,7 @@ - + A lamina propria that is part of a ureter [Automatically generated definition]. EMAPA:28841 @@ -64406,14 +64481,14 @@ lamina propria of ureter - + - + true https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -64523,8 +64598,8 @@ - - + + Distensible musculomembranous organ situated in the anterior part of the pelvic cavity in which urine collects before excretion[MP]. @@ -64571,11 +64646,11 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg - + - + @@ -64588,13 +64663,13 @@ - + FMA - + upper part of UG sinus @@ -65092,7 +65167,7 @@ - + A serous membrane that is part of a urinary bladder [Automatically generated definition]. TODO - check serosa/peritoneum EMAPA:28661 @@ -65115,14 +65190,14 @@ UBERON:0001260 serosa of urinary bladder - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -65411,7 +65486,7 @@ - + @@ -65443,14 +65518,14 @@ pancreatic acinus - + - + FMA @@ -65499,9 +65574,9 @@ - - - + + + An endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating hormones[GO]. @@ -65548,34 +65623,34 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png - + - + - + - + PMID:16417468 - + Wikipedia - + Wikipedia @@ -65640,7 +65715,7 @@ - + A trabecula that is part of a spleen. EMAPA:35808 @@ -65658,14 +65733,14 @@ trabecula of spleen - + - + FMA @@ -65694,7 +65769,7 @@ - + A structure found in the red pulp of the spleen between the sinusoids, consisting of fibrils and connective tissue cells with a large population of monocytes and macrophages. These cords contain half of the human body's monocytes as a reserve so that after tissue injury these monocytes can move in and aid locally sourced monocytes in wound healing. Erythrocytes pass through the cords of Billroth before entering the sinusoids. The passage into the sinusoids may be seen as a bottleneck, where erythrocytes need to be flexible in order to pass through. In disorders of erythrocyte shape and/or flexibility, such as hereditary spherocytosis, erythrocytes fail to pass through and get phagocytosed, causing extravascular hemolysis. EMAPA:37752 @@ -65710,14 +65785,14 @@ splenic cord - + - + MA @@ -65764,6 +65839,7 @@ The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]. + EHDAA2:0000507 EHDAA:5655 EMAPA:35343 @@ -65780,6 +65856,7 @@ uberon nervus femoralis UBERON:0001267 + femoral nerve http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png @@ -65870,8 +65947,8 @@ - - + + The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. There are three bones of the os coxae (hip bone) that come together to form the acetabulum. Contributing a little more than two-fifths of the structure is the ischium, which provides lower and side boundaries to the acetabulum. The ilium forms the upper boundary, providing a little less than two-fifths of the structure of the acetabulum. The rest is formed by the pubis, near the midline. It is bounded by a prominent uneven rim, which is thick and strong above, and serves for the attachment of the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint. At the lower part of the acetabulum is the acetabular notch, which is continuous with a circular depression, the acetabular fossa, at the bottom of the cavity of the acetabulum. The rest of the acetabulum is formed by a curved, crescent-moon shaped surface, the lunate surface, where the joint is made with the head of the femur. Its counterpart in the pectoral girdle is the glenoid fossa.[WP,unvetted]. Cavity for the articulation of the proximal bone of the hind limb.[AAO] During the transformation from the osteolepiform fins to tetrapod limbs, the appendages and girdles underwent a number of radical changes. The pelvic girdle became a weight-bearing structure by evolution of an ischium, a full mesio-ventral contact between the two sides of the girdle, an ilium, and a contact between the vertebral column and the girdle through a sacral rib. Fore- and hindlimbs shifted laterally by reorientation of the glenoid and the acetabulum.[well established][VHOG] @@ -65899,11 +65976,11 @@ acetabular part of hip bone http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg - + - + @@ -65916,13 +65993,13 @@ - + Phenoscape - + FMA @@ -66151,7 +66228,7 @@ - + @@ -66184,7 +66261,7 @@ innominate bone http://upload.wikimedia.org/wikipedia/commons/8/8b/Gray341.png - + @@ -66197,7 +66274,7 @@ - + FMA @@ -66292,14 +66369,14 @@ - + - + @@ -66341,24 +66418,24 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb - + - + - + FMA - + cjm @@ -66456,7 +66533,7 @@ - + @@ -66491,7 +66568,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb - + @@ -66516,7 +66593,7 @@ - + cjm @@ -66584,7 +66661,7 @@ - + @@ -66627,7 +66704,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb - + @@ -66652,7 +66729,7 @@ - + FMA @@ -67106,7 +67183,7 @@ - + @@ -67136,14 +67213,14 @@ liver parenchyma - + - + XAO @@ -67212,7 +67289,7 @@ - + @@ -67262,14 +67339,14 @@ hepatic sinusoid - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -67334,8 +67411,8 @@ - - + + @@ -67378,11 +67455,11 @@ intralobular bile duct - + - + @@ -67395,13 +67472,13 @@ - + FMA - + FMA @@ -67463,9 +67540,9 @@ - - - + + + @@ -67497,15 +67574,15 @@ bile canaliculus http://upload.wikimedia.org/wikipedia/commons/d/d9/Gray1094.png - + - + - + @@ -67519,19 +67596,19 @@ - + BTO - + FMA - + FMA @@ -67666,15 +67743,15 @@ - - + + - + The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]. kidney terms require review for cross-vertebrate compatibility and developmental relationships. @@ -67707,34 +67784,34 @@ nephron http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + - + - + FMA - + definitional - + Bgee:AN @@ -67918,15 +67995,15 @@ - - + + - + @@ -67963,15 +68040,15 @@ proximal convoluted tubule http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + - + - + @@ -67984,20 +68061,20 @@ - + MA uses subclass GOC:mtg_kidney_jan10 - + GO - + Wikipedia @@ -68163,7 +68240,7 @@ - + @@ -68190,7 +68267,7 @@ descending limb of loop of Henle http://upload.wikimedia.org/wikipedia/commons/0/02/Gray1128.png - + @@ -68203,7 +68280,7 @@ - + FMA @@ -68227,9 +68304,9 @@ - - - + + + @@ -68269,15 +68346,15 @@ proximal straight tubule - + - + - + @@ -68290,20 +68367,20 @@ - + MA - + MA uses subclass GOC:mtg_kidney_jan10 - + MA @@ -68451,7 +68528,7 @@ - + @@ -68489,7 +68566,7 @@ distal convoluted tubule https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png - + @@ -68502,7 +68579,7 @@ - + EMAPA GO MA-modified-from-isa @@ -68630,7 +68707,7 @@ - + @@ -68659,14 +68736,14 @@ inner medulla of kidney - + - + GO:0072053 @@ -68727,7 +68804,7 @@ - + @@ -68777,14 +68854,14 @@ endometrium https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + FMA @@ -68860,7 +68937,7 @@ - + @@ -68910,14 +68987,14 @@ myometrium https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + FMA @@ -68986,7 +69063,7 @@ - + Outer serosa layer of the uterus. TODO - check for parallel structure with peritoneum EMAPA:37792 @@ -69010,14 +69087,14 @@ serosa of uterus https://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cervix.jpg - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -69077,8 +69154,8 @@ - - + + The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]. BTO:0001877 @@ -69098,11 +69175,11 @@ psoas major muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + @@ -69115,14 +69192,14 @@ - + Transverse processes of T12-L5 and the lateral aspects of the discs between them dbpedia - + in the lesser trochanter of the femur dbpedia @@ -69181,7 +69258,7 @@ - + @@ -69211,14 +69288,14 @@ http://upload.wikimedia.org/wikipedia/commons/1/13/Anteriorglanspenis.jpg https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png - + - + Bgee:AN @@ -69274,7 +69351,7 @@ - + The external sac of skin that encloses the testes. It is an extension of the abdomen, and in placentals is located between the penis and anus. scrotal In elephants the testes remain in the abdomen @@ -69303,14 +69380,14 @@ http://upload.wikimedia.org/wikipedia/commons/a/a6/Scrotum_warm_and_cold.jpg http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png - + - + Wikipedia @@ -69370,14 +69447,14 @@ - + - + @@ -69432,24 +69509,24 @@ epididymis http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_testis_surface.jpg - + - + - + FMA - + Wikipedia @@ -69699,7 +69776,7 @@ - + A spherical aggregation of cells in the ovary that contains a single oocyte[WP,modified]. TODO - align subtypes based on staging, which is taxon-specific @@ -69738,14 +69815,14 @@ http://upload.wikimedia.org/wikipedia/commons/c/ca/Human_ovarian_follicle.jpg https://upload.wikimedia.org/wikipedia/commons/e/e6/Primary_follicle-4.JPG - + - + Wikipedia @@ -70689,7 +70766,7 @@ - + One the veins that drains the vaginal venous plexus, into the hypogastric veins. [WP,modified]. EMAPA:37796 @@ -70705,14 +70782,14 @@ vaginal vein http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray589.png - + - + FMA/obol @@ -70758,7 +70835,7 @@ - + The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]. EMAPA:37152 @@ -70777,14 +70854,14 @@ iliolumbar vein http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png - + - + FMA/obol @@ -70819,7 +70896,7 @@ - + The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]. EMAPA:37677 @@ -70836,14 +70913,14 @@ obturator vein http://upload.wikimedia.org/wikipedia/commons/b/bd/Gray585.png - + - + FMA/obol @@ -70967,7 +71044,7 @@ - + The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]. EMAPA:36512 @@ -70987,14 +71064,14 @@ tibial nerve http://upload.wikimedia.org/wikipedia/commons/1/1a/Gray828.png - + - + FMA WP @@ -71121,7 +71198,7 @@ - + Muscle (organ) which is a part of the pelvis. Examples: levator ani,. @@ -71138,7 +71215,7 @@ muscle of pelvis - + @@ -71150,7 +71227,7 @@ - + FMAdef @@ -71196,7 +71273,7 @@ - + The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]. the levator ani muscle acts to lower the tail, in animals that have one EMAPA:19165 @@ -71214,14 +71291,14 @@ levator ani muscle http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png - + - + inner surface of the side of the lesser pelvis dbpedia @@ -71264,8 +71341,8 @@ - - + + The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]. EMAPA:37482 @@ -71284,25 +71361,25 @@ coccygeus muscle http://upload.wikimedia.org/wikipedia/commons/6/63/Gray404.png - + - + - + sacral nerves: S4 S5 or S3-S4 dbpedia - + Sacrospinous ligament and ischial spine dbpedia @@ -71848,8 +71925,8 @@ - - + + @@ -71880,25 +71957,25 @@ http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb - + - + - + FMA MA - + FMA @@ -72004,8 +72081,8 @@ - - + + @@ -72041,24 +72118,24 @@ spongiose part of urethra http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png - + - + - + FMA - + FMA @@ -72310,14 +72387,14 @@ - + - + The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]. BTO:0005088 @@ -72337,24 +72414,24 @@ dorsal artery of penis http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray1155.png - + - + - + BTO - + FMA @@ -72560,7 +72637,7 @@ - + @@ -72605,14 +72682,14 @@ http://upload.wikimedia.org/wikipedia/commons/4/49/Seminiferous_tubule_and_sperm_low_mag.jpg http://upload.wikimedia.org/wikipedia/commons/6/6a/Gray1145.png - + - + Wikipedia @@ -72770,8 +72847,8 @@ - UBERON:0000051 - UBERON:0000052 + + Wikipedia:Vaginal_fornix_of_brain uberon UBERON:0001345 @@ -72788,7 +72865,7 @@ - + A membrane that surrounds or partially covers the vaginal opening. hymen EMAPA:37795 @@ -72809,14 +72886,14 @@ vaginal hymen http://upload.wikimedia.org/wikipedia/commons/2/26/Gray1229.png - + - + FMA @@ -73079,7 +73156,7 @@ - + @@ -73090,7 +73167,7 @@ - + @@ -73138,7 +73215,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb - + @@ -73151,7 +73228,7 @@ - + FMA @@ -73301,15 +73378,15 @@ - - + + - + A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter. consider revisiting superclass after refinement of CARO/EAO, conduit may not be quite correct. tympanic ring, which serves as support for the tympanic membrane, directs invagination of the first pharingeal cleft ectoderm to form the external acoustic meatus (EAM), which provides the outer layer of the membrane[PMID 11237469] @@ -73341,34 +73418,34 @@ external acoustic meatus - + - + - + - + FMA - + PMID:11237469 - + EHDAA2 @@ -73426,7 +73503,7 @@ - + The anus and surrounding regions. Encompasses both internal and external regions, where present. Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG] EFO:0000847 @@ -73452,14 +73529,14 @@ https://github.com/obophenotype/uberon/issues/507 http://upload.wikimedia.org/wikipedia/commons/f/fb/Gray408.png - + - + cjm @@ -73649,7 +73726,7 @@ - + The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]. EMAPA:37670 @@ -73666,14 +73743,14 @@ medial circumflex femoral artery http://upload.wikimedia.org/wikipedia/commons/c/c5/Circumflex_femoral_arteries.png - + - + FMA @@ -73705,8 +73782,8 @@ - - + + @@ -73743,24 +73820,24 @@ inferior rectal artery http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png - + - + - + FMA-abduced-lr - + FMA-abduced-lr @@ -73838,7 +73915,7 @@ - + The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]. EMAPA:37107 @@ -73857,14 +73934,14 @@ perineal artery http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray542.png - + - + FMA @@ -73905,8 +73982,8 @@ - - + + @@ -73949,11 +74026,11 @@ cerebrospinal fluid - + - + @@ -73966,13 +74043,13 @@ - + EHDAA2 - + see notes EHDAA2 @@ -74159,7 +74236,7 @@ - + EMAPA:37179 FMA:21246 @@ -74170,14 +74247,14 @@ perineal vein - + - + FMA/obol @@ -74193,7 +74270,7 @@ - + The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]. BTO:0003271 @@ -74217,14 +74294,14 @@ great saphenous vein http://upload.wikimedia.org/wikipedia/commons/5/51/Great_saphenous_vein.png - + - + FMA/obol @@ -74264,8 +74341,8 @@ - FMA:21431 - ZFA:0000271 + + radial radialis uberon @@ -74510,9 +74587,9 @@ - - - + + + An adductor muscle that attaches to the femur and the pelvis. In humans, the obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,generalized]. Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.[AAO] the definition generalized to accommodate the AAO class - 'Originates on the ventro-lateral pelvic rim and inserts on the ventral aspect of the femur, medial to the insertion of the pectineus.' [AAO:0010043] @@ -74539,15 +74616,15 @@ obturator externus http://upload.wikimedia.org/wikipedia/commons/5/55/Posterior_Hip_Muscles_1.PNG - + - + - + @@ -74566,20 +74643,20 @@ - + FMA - + obturator foramen and obturatory membrane dbpedia - + trochanteric fossa of femur dbpedia @@ -74666,10 +74743,10 @@ - - - - + + + + The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]. AAO has iliacus major and minor, both of which attach to ilium and femur - consider grouping these somehow @@ -74691,19 +74768,19 @@ iliacus muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + - + @@ -74716,26 +74793,26 @@ - + dbpedia - + dbpedia - + lesser trochanter of femur dbpedia - + dbpedia @@ -74783,10 +74860,10 @@ - - - - + + + + The largest and most superficial of the three gluteal muscles [WP,unvetted]. In humans, it makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. @@ -74810,45 +74887,45 @@ gluteus maximus http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG - + - + - + - + - + Gluteal surface of ilium lumbar fascia sacrum sacrotuberous ligament dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -74889,9 +74966,9 @@ - - - + + + One of three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]. A&P heads in rat, single head in humans[DOI:10.1002/ar.22919] EMAPA:19163 @@ -74910,35 +74987,35 @@ gluteus medius http://upload.wikimedia.org/wikipedia/commons/7/70/Posterior_Hip_Muscles_3.PNG - + - + - + - + FMA - + Gluteal surface of ilium under gluteus maximus dbpedia - + Greater trochanter of the femur dbpedia @@ -74974,8 +75051,8 @@ - - + + The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. [WP,unvetted]. BTO:0001878 @@ -74996,11 +75073,11 @@ psoas minor muscle http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray430.png - + - + @@ -75013,14 +75090,14 @@ - + Lateral surface bodies of T12 and L1 vertebrae and intervening intervertebral disc dbpedia - + pectineal line dbpedia @@ -75056,7 +75133,7 @@ - + @@ -75069,7 +75146,7 @@ - + The Sartorius muscle - the longest muscle in the human body - is a long thin muscle that runs down the length of the thigh. Its upper portion forms the lateral border of the femoral triangle. We do NOT group this AAO class here at this stage until further evidence of shared attachments @@ -75099,25 +75176,25 @@ sartorius muscle http://upload.wikimedia.org/wikipedia/commons/a/af/Sartorius.png - + - + - + femoral nerve dbpedia - + anteromedial surface of the upper tibia in the pes anserinus dbpedia @@ -75175,10 +75252,10 @@ - - - - + + + + The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]. BTO:0003418 @@ -75201,19 +75278,19 @@ biceps femoris http://upload.wikimedia.org/wikipedia/commons/b/bc/Biceps_femoris_muscle_long_head.PNG - + - + - + - + @@ -75226,27 +75303,27 @@ - + long head: tibial nerveshort head: common peroneal nerve dbpedia - + dbpedia - + the head of the fibula which articulates with the back of the lateral tibial condyle dbpedia - + the head of the fibula which articulates with the back of the lateral tibial condyle dbpedia @@ -75282,7 +75359,7 @@ - + The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]. A&P heads in rat, single head in humans[DOI:10.1002/ar.22919] @@ -75304,7 +75381,7 @@ semitendinosus https://upload.wikimedia.org/wikipedia/commons/3/3f/Semitendinosus_muscle.PNG - + @@ -75317,7 +75394,7 @@ - + dbpedia @@ -75423,9 +75500,9 @@ - - - + + + One of the muscles belong to the group consisting of the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). The quadriceps is a collective term for the rectus femoris and the three heads of the vastus (lateralis, medialis, intermedius). [Evolution, Fourth_Edition_(2006)_McGraw-Hill, Function, Kardong_KV, Vertebrates:_Comparative_Anatomy, p.391][VHOG] @@ -75459,35 +75536,35 @@ quadriceps femoris http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + dbpedia - + combined rectus femoris and vastus muscles dbpedia - + tibial tuberosity dbpedia @@ -75558,9 +75635,9 @@ - - - + + + The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]. BTO:0001564 @@ -75579,35 +75656,35 @@ rectus femoris https://upload.wikimedia.org/wikipedia/commons/1/14/Rectus_femoris.png - + - + - + - + ISBN:0073040584 - + anterior inferior iliac spine and the exterior surface of the bony ridge which forms the iliac portion of the acetabulum dbpedia - + dbpedia @@ -75629,7 +75706,7 @@ - + The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]. lateralis @@ -75652,14 +75729,14 @@ vastus lateralis http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + ISBN:0073040584 @@ -75687,9 +75764,9 @@ - - - + + + The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]. medialis @@ -75709,34 +75786,34 @@ vastus medialis https://upload.wikimedia.org/wikipedia/commons/0/05/Illu_lower_extremity_muscles.jpg - + - + - + - + ISBN:0073040584 - + dbpedia - + dbpedia @@ -75816,9 +75893,9 @@ - - - + + + An adductor muscle that attaches to the pelvic bone and the femur. In humans, The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,generalized]. Originates on the lateral border of the ilium and the anterior margin of the pubis. It inserts on the ventral surface of the femoral shaft.[AAO] @@ -75841,15 +75918,15 @@ pectineus muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Anterior_Hip_Muscles_2.PNG - + - + - + @@ -75862,21 +75939,21 @@ - + Femoral nerve sometimes obturator nerve dbpedia - + pectineal line - superior pubic ramus dbpedia - + dbpedia @@ -75937,7 +76014,7 @@ - + A muscle that is part of the region of the hindlimb between the pelvis and ankle. see notes on UBERON:0000978 for possible confusion over the term 'leg'. @@ -75964,14 +76041,14 @@ muscle of leg - + - + prolog @@ -76039,7 +76116,7 @@ - + @@ -76093,14 +76170,14 @@ primary motor cortex http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png - + - + MA Wikipedia @@ -76194,11 +76271,11 @@ - - - - - + + + + + A muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]. The M. tibialis cranialis is a muscle that flexes the tarsometatarsus. It originates on the craniodistal aspect of the femur and proximal tibiotarsus and inserts on the cranial surface of the tarsometarsus[EvoWiki]. BTO:0001382 EFO:0001385 @@ -76224,56 +76301,56 @@ tibialis anterior http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png - + - + - + - + - + - + medial cuneiform and first metatarsal bones of the foot dbpedia - + medial cuneiform and first metatarsal bones of the foot dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -76328,11 +76405,11 @@ - - - - - + + + + + A penniform muscle of the lateral front part of the hindlimb responsible for extension of the digits and dorsiflexion of the ankle. BTO:0000436 @@ -76354,23 +76431,23 @@ extensor digitorum longus http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray1241.png - + - + - + - + - + @@ -76383,34 +76460,34 @@ - + dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Anterior lateral condyle of tibia anterior shaft of fibula and superior of interosseous membrane dbpedia - + Dorsal surface; middle and distal phalanges of lateral four digits dbpedia @@ -76452,8 +76529,8 @@ - - + + A superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]. EMAPA:36253 FMA:22539 @@ -76479,24 +76556,24 @@ fibularis longus http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray1240.png - + - + - + dbpedia - + dbpedia @@ -76562,24 +76639,24 @@ - - + + - - - + + + - + The most superficial muscle of the triceps surae group, in the posterior portion of the lower hindleg. The most superficial calf muscle in the posterior part of the leg. [TFD][VHOG] @@ -76612,68 +76689,68 @@ gastrocnemius http://upload.wikimedia.org/wikipedia/commons/8/8e/Gastrocnemius.png - + - + - + - + - + - + - + FMA - + tibial nerve from the sciatic specifically nerve roots dbpedia - + superior to articular surfaces of lateral condyle of femur and medial condyle of femur dbpedia - + tendo calcaneus into mid-posteior calcaneus dbpedia - + tendo calcaneus into mid-posteior calcaneus dbpedia - + dbpedia @@ -76730,17 +76807,17 @@ - - - - + + + + - + A deep muscle of the triceps surae group, in the superficial posterior compartment of the leg. @@ -76766,56 +76843,56 @@ soleus muscle http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + - + - + FMA - + tibial nerve specifically nerve roots dbpedia - + fibula medial border of tibia dbpedia - + dbpedia - + dbpedia @@ -76903,9 +76980,9 @@ - - - + + + The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]. EMAPA:36240 @@ -76928,35 +77005,35 @@ popliteus muscle http://upload.wikimedia.org/wikipedia/commons/c/c1/Gray439.png - + - + - + - + dbpedia - + posterior-medial tibia under the tibial condyles dbpedia - + middle facet of the lateral surface of the lateral femoral condyle dbpedia @@ -77000,9 +77077,9 @@ - - - + + + A deep muscle of the posterior compartment of the hindlimb that is innervated by the tibial nerve, arises from the fibula and insets in the distal phalanx of pedal digit 1. EMAPA:37588 @@ -77020,36 +77097,36 @@ flexor hallucis longus http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png - + - + - + - + tibial nerve S1 and S2 nerve roots dbpedia - + fibula posterior aspect of middle 1/3 dbpedia - + Plantar surface; base of distal phalanx of hallux dbpedia @@ -77090,8 +77167,8 @@ - - + + @@ -77133,24 +77210,24 @@ auditory cortex http://upload.wikimedia.org/wikipedia/commons/8/81/Brodmann_41_42.png - + - + - + MA - + Wikipedia @@ -77846,7 +77923,7 @@ - + A longissimus muscle that lies medial to the longissimus cervicis, between it and the semispinalis capitis. It arises by tendons from the transverse processes of the upper four or five thoracic vertebrae, and the articular processes of the lower three or four cervical vertebrae, and is inserted into the posterior margin of the mastoid process, beneath the splenius capitis and sternocleidomastoid.[WP,unvetted]. BTO:0001649 EMAPA:37650 @@ -77864,14 +77941,14 @@ longissimus capitis http://upload.wikimedia.org/wikipedia/commons/1/1f/Longissimus.png - + - + Wikipedia:Mastoid_process @@ -78109,8 +78186,8 @@ - - + + The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]. EMAPA:37696 FMA:22828 @@ -78129,11 +78206,11 @@ semispinalis thoracis http://upload.wikimedia.org/wikipedia/commons/6/65/Semispinalis.png - + - + @@ -78146,14 +78223,14 @@ - + transverse processes of the sixth to the tenth thoracic vertebre dbpedia - + spinous processes of the upper four thoracic and lower two cervical vertebrae dbpedia @@ -78208,8 +78285,8 @@ - - + + The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]. EMAPA:37695 FMA:22829 @@ -78225,11 +78302,11 @@ semispinalis cervicis http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + - + @@ -78242,14 +78319,14 @@ - + transverse processes of the upper five or six thoracic vertebrae dbpedia - + cervical spinous processes from the axis to the fifth dbpedia @@ -78285,7 +78362,7 @@ - + The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]. EMAPA:37694 FMA:22830 @@ -78306,7 +78383,7 @@ semispinalis capitis http://upload.wikimedia.org/wikipedia/commons/7/7f/Gray384.png - + @@ -78319,7 +78396,7 @@ - + Transversal process of lower cervical and higher thoracal columna dbpedia @@ -78446,8 +78523,8 @@ - - + + A superficial vein of the upper limb that drain parts of manus and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the manus, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. @@ -78468,24 +78545,24 @@ basilic vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -78558,8 +78635,8 @@ - - + + A vein that accompanies the brachial artery between the shoulder and the elbow. Vein which collects blood from the forelimb and drains into the subclavian vein.[AAO] @@ -78579,24 +78656,24 @@ brachial vein http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray576.png - + - + - + FMA/obol - + FMA/obol @@ -78633,7 +78710,7 @@ - + A vein between the biceps and pronator radii teres muscles that unites with the common ulnar vein to form the basilic vein within the forearm. Merged median cubital and basilic veins on basis of wikipedia synonym - needs verificied @@ -78656,14 +78733,14 @@ median basilic vein http://upload.wikimedia.org/wikipedia/commons/b/ba/Gray574.png - + - + FMA/obol @@ -79054,8 +79131,8 @@ - - + + A vein formed by the confluence of the thoracodorsal and circumflex scapular veins and accompanying the subscapular artery to drain into the axillary vein. EMAPA:37190 @@ -79067,24 +79144,24 @@ subscapular vein - + - + - + FMA/obol - + FMA/obol @@ -79326,7 +79403,7 @@ - + The major preaxial endochondral bone in the anterior zeugopod[Phenoscape]. One of the two long bones of endochondral origin of the fore-epipodium; it is located on the lateral side of the ulna. Its upper end articulates with both the humerus and the ulna, whereas the lower articulates with the carpals.[AAO] @@ -79352,14 +79429,14 @@ Due to the presence of the radius in Tetrpodomorph fish this element is not inherently linked to the presence of digits or flexor musculature. The corresponding bone in the posterior fin/limb is the tibia.[Phenoscape]. In four-legged animals, the radius is the main load-bearing bone of the lower forelimb. Its structure is similar in most terrestrial tetrapods, but it may be fused with the ulna in some mammals (such as horses) and reduced or modified in animals with flippers or vestigial forelimbs [ISBN:0-03-910284-X] radius bone - + - + definitional @@ -79415,7 +79492,7 @@ - + The major postaxial endochondral bone in the anterior zeugopod[Phenoscape]. One of the two long bones of endochondral origin of the fore-epipodium; it is located on the medial (inner) side of the radius. The upper end of the ulna articulates with the lower end of the humerus forming a strong hinge joint with the carpals, whereas the lower articulates with the carpals.[AAO] @@ -79441,14 +79518,14 @@ ulna http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg - + - + definitional @@ -80994,7 +81071,7 @@ - + @@ -81043,14 +81120,14 @@ UBERON:0001440 forelimb skeleton - + - + FMA @@ -81151,7 +81228,7 @@ - + @@ -81197,14 +81274,14 @@ TOOD - find a home for: FMA:24140 hindlimb skeleton - + - + FMA @@ -81302,7 +81379,7 @@ - + @@ -81341,14 +81418,14 @@ here 'manus' includes both the wrist region, metatarsal region and acropodial region skeleton of manus - + - + EHDAA2 @@ -81424,7 +81501,7 @@ - + Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]. FMA:24216 present in FMA1, but gone in subsequent versions @@ -81462,7 +81539,7 @@ chest http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg - + @@ -81475,7 +81552,7 @@ - + FMA MA @@ -81568,7 +81645,7 @@ - + @@ -81601,14 +81678,14 @@ here 'pes' includes both the ankle region, metatarsals and acropodial region skeleton of pes - + - + EHDAA2 @@ -82251,7 +82328,7 @@ - + @@ -82291,14 +82368,14 @@ navicular bone of pes http://upload.wikimedia.org/wikipedia/commons/8/81/Gray276.png - + - + numbers vary @@ -83466,7 +83543,7 @@ - + The elbow is the region surrounding the elbow-joint-the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted,human-specific]. cubital Naming conventions for pod terms under discussion within phenoscape group @@ -83496,14 +83573,14 @@ elbow https://upload.wikimedia.org/wikipedia/commons/5/5c/Elbow_coude.JPG - + - + EHDAA2 @@ -83730,7 +83807,7 @@ - + The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,modified]. The pelvic girdle is never joined by contributions of dermal bone. From its first appearance in placoderms, the pelvic girdle is exclusively endoskeletal. It arose from pterygiophores, perhaps several times, in support of the fin.[well established][VHOG] coxal @@ -83763,14 +83840,14 @@ hip http://upload.wikimedia.org/wikipedia/commons/9/9f/Hip.jpg - + - + FMA-modified @@ -83882,7 +83959,7 @@ - + @@ -83923,14 +84000,14 @@ pedal digit http://upload.wikimedia.org/wikipedia/commons/5/5e/Toes.jpg - + - + PHENOSCAPE:ni @@ -84022,7 +84099,7 @@ - + @@ -84058,14 +84135,14 @@ shoulder http://upload.wikimedia.org/wikipedia/commons/9/90/Shoulderjoint.PNG - + - + FMA-modified @@ -84122,8 +84199,8 @@ - - + + The joint between adjacent vertebral bodies. May be composed of the nucleus pulposus, annular ligament, and the anterior and posterior longitudinal ligaments. FMA has 'intervertebral joint' as a GAT, and has two distinct classes 'intervertebral symphysis' and 'intervertebral syndesmosis', but note that the latter do not connect the centra vertebral joint @@ -84141,11 +84218,11 @@ UBERON:0001468 intervertebral joint - + - + @@ -84158,13 +84235,13 @@ - + FMA - + connects successive pairs of centra @@ -84213,14 +84290,14 @@ - - + + - - + + The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]. sternoclavicular EMAPA:19203 @@ -84241,11 +84318,11 @@ sternoclavicular joint http://upload.wikimedia.org/wikipedia/commons/3/3f/Gray325.png - + - + @@ -84258,13 +84335,13 @@ - + clavicular notch of the manubrium sterni - + sternal end of the clavicle and first rib @@ -84677,7 +84754,7 @@ - + @@ -84688,7 +84765,7 @@ - + @@ -84739,14 +84816,14 @@ bone element - + - + VSAO-modified @@ -84838,9 +84915,9 @@ - FMA:30319 - UBERON:0000211 - UBERON:0002360 + + + uberon UBERON:0001475 made obsolete as it incorrectly grouped classes @@ -84875,9 +84952,9 @@ - - - + + + @@ -84890,12 +84967,12 @@ - - - - - - + + + + + + A muscle of shoulder which attaches to the scapula, clavicle and humerus.[FMA,generalized]. Muscle which originates as three heads, the pars externalis, pars clavicularis, and pars scapularis. The pars externalis originates from the lateral border of the omosternum and inserts on the distal portion of the humerus. The pars clavicularis originates from the ventro-lateral surface of the clavicle and inserts on the deltoid crest of the humerus. The pars scapularis originates from the lateral surface of the clavicle and inserts on the deltoid crest of the humerus.[AAO] @@ -84927,39 +85004,39 @@ deltoid http://upload.wikimedia.org/wikipedia/commons/9/93/Deltoideus.png - + - + - + - + - + - + - + - + - + @@ -84972,59 +85049,59 @@ - + EHDAA2 - + dbpedia - + EHDAA2 - + FMA - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + the anterior border and upper surface of the lateral third of the clavicle acromion spine of the scapula dbpedia - + deltoid tuberosity of humerus dbpedia - + dbpedia @@ -85101,9 +85178,9 @@ - - - + + + The infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]. The pectoral muscles - the pectoralis major and pectoralis minor - evolved from a primitive muscle sheet that connected the coracoid to the humerus. In late reptilians and early mammals, this muscle structure was displaced dorsally; while most of its components evolved into the pectoralis major, some fibers eventually attached to the scapula and evolved into the supraspinatus, the infraspinatus, and parts of the subscapularis. @@ -85128,35 +85205,35 @@ infraspinatus muscle http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png - + - + - + - + Wikipedia - + infraspinous fossa of the scapula dbpedia - + middle facet of greater tubercle of the humerus dbpedia @@ -85205,9 +85282,9 @@ - - - + + + Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]. EHDAA2:0002004 @@ -85230,35 +85307,35 @@ teres major muscle http://upload.wikimedia.org/wikipedia/commons/9/99/Arm_muscles_back_numbers.png - + - + - + - + EHDAA2 - + posterior aspect of the inferior angle of the scapula dbpedia - + medial lip of the intertubercular sulcus of the humerus dbpedia @@ -85484,7 +85561,7 @@ - + @@ -85510,14 +85587,14 @@ muscle of shoulder - + - + prolog @@ -85750,7 +85827,7 @@ - + The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation[WP,unvetted]. EFO:0001957 @@ -85776,14 +85853,14 @@ knee joint http://upload.wikimedia.org/wikipedia/commons/c/ca/Knee.agr.jpg - + - + definitional @@ -85833,7 +85910,7 @@ - + @@ -85846,7 +85923,7 @@ - + A synovial joint that connects the femur to the acetbulum of the innominate bone. BTO:0001502 EMAPA:19136 @@ -85869,11 +85946,11 @@ hip joint - + - + @@ -85886,13 +85963,13 @@ - + FMA - + definitional @@ -86229,7 +86306,7 @@ - + A joint that connects the forelimb zeugopod and stylopod skeletons[Obol]. In human anatomy, the elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis EMAPA:19102 @@ -86253,14 +86330,14 @@ elbow joint - + - + definitional @@ -86485,7 +86562,7 @@ - + @@ -86513,14 +86590,14 @@ http://upload.wikimedia.org/wikipedia/commons/e/ea/Brachial_plexus_2.svg https://upload.wikimedia.org/wikipedia/commons/d/d4/Brachial_plexus.jpg - + - + MA @@ -86732,7 +86809,7 @@ - + @@ -86776,14 +86853,14 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - + - + EHDAA2 @@ -86838,7 +86915,7 @@ - + Any muscle organ that is part of a pelvic girdle [Automatically generated definition]. Note that in MA, this is a subclass of pelvis muscle; in FMA this is a hindlimb muscle, but recall in FMA hindlimb includes the girdle. UBERON:0003271 @@ -86859,14 +86936,14 @@ muscle of pelvic girdle - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -86935,7 +87012,7 @@ - + Any muscle organ that is part of a pes [Automatically generated definition]. BTO:0000477 EMAPA:36160 @@ -86950,14 +87027,14 @@ UBERON:0001498 muscle of pes - + - + prolog @@ -87002,7 +87079,7 @@ - + A muscle organ that is part of an arm [Automatically generated definition]. See notes on UBERON:0001460 for possible terminological confusion over term 'arm'. MA uses this consistent with uberon (forelimb muscle is subdivided into shoulder, arm and hand) @@ -87023,14 +87100,14 @@ muscle of arm - + - + https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships @@ -87093,7 +87170,7 @@ - + Any muscle organ that is part of a manus [Automatically generated definition]. EMAPA:32644 @@ -87110,14 +87187,14 @@ muscle of manus - + - + prolog @@ -87305,7 +87382,7 @@ - + The dorsal interossei of the hand are muscles that occupy the space between the metacarpals. There are four dorsal interossei in each hand. They are specified as 'dorsal' to contrast them with the palmar interossei, which are located on the anterior side of the metacarpals. The dorsal interosseous muscles are bipennate, with each muscle arising by two heads from the adjacent sides of the metacarpal bones, but more extensively from the metacarpal bone of the finger into which the muscle is inserted. They are inserted into the bases of the proximal phalanges and into the extensor expansion of the corresponding extensor digitorum tendon. The middle digit has two dorsal interossei insert onto it while the first digit (thumb) and the fifth digit (little finger) have none[WP]. EMAPA:37519 FMA:37418 @@ -87324,14 +87401,14 @@ Action: abducts medial digits dorsal interosseous of manus - + - + dbpedia @@ -87437,9 +87514,9 @@ - - - + + + The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]. EMAPA:36182 @@ -87461,15 +87538,15 @@ coracobrachialis muscle http://upload.wikimedia.org/wikipedia/commons/8/8c/Coracobrachialis.png - + - + - + @@ -87482,20 +87559,20 @@ - + dbpedia - + coracoid process of scapula dbpedia - + medial humerus dbpedia @@ -87544,9 +87621,9 @@ - - - + + + The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]. A muscle of the stylopodium, covering the distal half of the humerus and the anterior part of the elbow joint. It functions to flex the zeugopodium. [TFD][VHOG] @@ -87571,35 +87648,35 @@ brachialis muscle http://upload.wikimedia.org/wikipedia/commons/8/87/Brachialis.png - + - + - + - + dbpedia - + anterior surface of the humerus particularly the distal half of this bone dbpedia - + coronoid process and the tuberosity of the ulna dbpedia @@ -87651,11 +87728,11 @@ - - - - - + + + + + A muscle in the forelimb stylopod which in humans has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]. biceps BTO:0003419 @@ -87681,58 +87758,58 @@ biceps brachii https://upload.wikimedia.org/wikipedia/commons/5/5d/Biceps_brachii_muscle06.png - + - + - + - + - + - + Musculocutaneous nerve dbpedia - + short head: coracoid process of the scapula. long head: supraglenoid tubercle dbpedia - + short head: coracoid process of the scapula. long head: supraglenoid tubercle dbpedia - + radial tuberosity and bicipittal aponeurosis into deep fascia on medial part of forearm dbpedia - + dbpedia @@ -87803,7 +87880,7 @@ - + @@ -87851,14 +87928,14 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - + - + left arch 4 in human embryology.ch @@ -87918,12 +87995,12 @@ - - - - - - + + + + + + The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]. EHDAA2:0002080 @@ -87950,69 +88027,69 @@ triceps brachii https://upload.wikimedia.org/wikipedia/commons/8/83/Triceps_brachii.png - + - + - + - + - + - + - + radial nerve and axillary nerve dbpedia - + radial nerve and axillary nerve dbpedia - + lateral head: posterior humerus dbpedia - + long head: infraglenoid tubercle of scapula dbpedia - + olecranon process of ulna dbpedia - + dbpedia @@ -88340,7 +88417,7 @@ - + @@ -88376,7 +88453,7 @@ https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - + @@ -88389,7 +88466,7 @@ - + Wikipedia @@ -88528,7 +88605,7 @@ - + @@ -88577,14 +88654,14 @@ abdominal aorta http://upload.wikimedia.org/wikipedia/commons/a/af/Gray531.png - + - + FMA @@ -88878,11 +88955,11 @@ - - - - - + + + + + The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]. EMAPA:36207 FMA:38450 @@ -88899,57 +88976,57 @@ pronator teres http://upload.wikimedia.org/wikipedia/commons/8/87/Pronator-teres.png - + - + - + - + - + - + dbpedia - + humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna dbpedia - + humeral head: medial epicondyle of humerus ulnar head: coronoid process of ulna dbpedia - + Middle of the lateral surface of the body of the radius dbpedia - + dbpedia @@ -88991,7 +89068,7 @@ - + A muscle of the forearm that acts to flex and abduct the manus. [WP,unvetted]. Muscle which originates on the inner border of the humerus and inserts on the carpus.[AAO] @@ -89012,14 +89089,14 @@ flexor carpi radialis muscle http://upload.wikimedia.org/wikipedia/commons/5/59/Flexor-carpi-radialis.png - + - + 2 and 3 in human @@ -89063,8 +89140,8 @@ - - + + The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the manus. [WP,unvetted]. AAO has a class with the same name, the exact insertion point is unclear; consider grouping :Muscle which originates from the medial condyle of the humerus and inserts on the carpus. [AAO:0010734] @@ -89084,25 +89161,25 @@ flexor carpi ulnaris muscle http://upload.wikimedia.org/wikipedia/commons/c/c1/FCU.png - + - + - + medial epicondyle dbpedia - + dbpedia @@ -89144,9 +89221,9 @@ - - - + + + A muscle in the forearm that flexes the manual digits[WP,modified]. in EMAPA, this is part of the leg, which is presumably a mistake @@ -89166,15 +89243,15 @@ flexor digitorum profundus http://upload.wikimedia.org/wikipedia/commons/2/24/Flexor-digitorum-profundis.png - + - + - + @@ -89187,21 +89264,21 @@ - + upper 3/4 of the volar and medial surfaces of the body of the ulna interosseous membrane and deep fascia of the forearm dbpedia - + base of the distal phalanges of the fingers dbpedia - + dbpedia @@ -89242,8 +89319,8 @@ - - + + Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]. EMAPA:36189 @@ -89262,25 +89339,25 @@ extensor carpi radialis longus muscle http://upload.wikimedia.org/wikipedia/commons/7/75/ECR-longus.png - + - + - + lateral supracondylar ridge dbpedia - + base dbpedia @@ -89316,8 +89393,8 @@ - - + + The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]. EMAPA:36188 @@ -89335,24 +89412,24 @@ extensor carpi radialis brevis muscle - + - + - + dbpedia - + base dbpedia @@ -89388,7 +89465,7 @@ - + @@ -89418,7 +89495,7 @@ http://upload.wikimedia.org/wikipedia/commons/2/25/Extensor_carpi_ulnaris_muscle.png http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray418.png - + @@ -89431,7 +89508,7 @@ - + deep part dbpedia @@ -89463,14 +89540,14 @@ - + - + The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]. EMAPA:36210 FMA:38515 @@ -89487,24 +89564,24 @@ abductor pollicis longus http://upload.wikimedia.org/wikipedia/commons/6/66/Gray1231.png - + - + - + dbpedia - + dbpedia @@ -89720,7 +89797,7 @@ - + @@ -89758,7 +89835,7 @@ common carotid artery plus branches http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + @@ -89771,7 +89848,7 @@ - + Wikipedia @@ -89907,8 +89984,8 @@ - - + + A terminal branch of the left or right common carotid artery which supplies oxygenated blood to the brain and eyes[MP]. Each of two arteries starting at the bifurcation of the common carotid arteries through which blood circulates to many structures and organs in the head. [TFD][VHOG] @@ -89947,11 +90024,11 @@ internal carotid artery http://upload.wikimedia.org/wikipedia/commons/9/9c/Gray513.png - + - + @@ -89964,13 +90041,13 @@ - + cjm - + FMA @@ -90054,8 +90131,8 @@ - - + + One of two laterally paired arteries that supplies the pectoral appendages, usually branching from the dorsal aorta. Developmental relationships should be added (intersegmental artery and right dorsal aorta in EHDAA2, occipitovertebral artery in XAO) @@ -90093,24 +90170,24 @@ subclavian artery http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg - + - + - + EHDAA2 - + EHDAA2 @@ -90629,7 +90706,7 @@ - + The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]. EMAPA:37101 @@ -90649,14 +90726,14 @@ medial plantar artery http://upload.wikimedia.org/wikipedia/commons/3/3e/Gray555.png - + - + FMA @@ -90855,7 +90932,7 @@ - + The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]. EMAPA:37181 @@ -90876,14 +90953,14 @@ popliteal vein http://upload.wikimedia.org/wikipedia/commons/6/66/Gray609.png - + - + FMA/obol @@ -90918,8 +90995,8 @@ - - + + A vein of the lower limb that carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]. @@ -90939,11 +91016,11 @@ anterior tibial vein https://upload.wikimedia.org/wikipedia/commons/4/4e/Gray440_color.png - + - + @@ -90956,13 +91033,13 @@ - + FMA/obol - + FMA/obol @@ -91003,8 +91080,8 @@ - - + + A vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]. EMAPA:37183 @@ -91023,11 +91100,11 @@ posterior tibial vein http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray583.png - + - + @@ -91040,13 +91117,13 @@ - + FMA/obol - + FMA/obol @@ -91081,7 +91158,7 @@ - + The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]. BTO:0003272 @@ -91103,14 +91180,14 @@ small saphenous vein http://upload.wikimedia.org/wikipedia/commons/6/62/Gray582.png - + - + FMA @@ -91145,7 +91222,7 @@ - + A continuation of the Dorsal venous arch of the foot and is the origin of the short saphenous vein. @@ -91161,14 +91238,14 @@ lateral marginal vein - + - + FMA/obol @@ -91274,7 +91351,7 @@ - + A continuation of the Dorsal venous arch of the foot and is the origin of the long saphenous vein. EMAPA:37170 @@ -91289,14 +91366,14 @@ medial marginal vein - + - + FMA/obol @@ -91333,7 +91410,7 @@ - + The term 'sural veins' is not sufficient to appropriately designate the complex venous system of the calf. This should be designated as soleal veins (venae solealis), the veins of the soleus muscle and gastrocnemius veins (venae gastrocnemii) EMAPA:37231 FMA:44561 @@ -91343,14 +91420,14 @@ UBERON:0001551 vein of hindlimb zeugopod - + - + FMA @@ -91379,7 +91456,7 @@ - + @@ -91402,14 +91479,14 @@ kidney arcuate artery https://upload.wikimedia.org/wikipedia/commons/8/87/2610_The_Kidney.jpg - + - + MA @@ -91586,7 +91663,7 @@ - + A tube extending from the mouth to the anus. @@ -91629,14 +91706,14 @@ digestive tract - + - + NCBIBook:NBK10107 @@ -91854,8 +91931,8 @@ - FMA:45729 - MA:0000581 + + head organ organ head uberon @@ -91949,8 +92026,8 @@ - - + + A group of muscles (or in some classifications, muscle bellies) that are located under the jaw and attach to the base of the cranium and typically attaches to the hyoid apparatus via a common tendon. this class refers to the mereological sum of digastric muscles in an organism (typically two). The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. Wikipedia:Digastric_muscle]. @@ -91974,11 +92051,11 @@ digastric muscle group http://upload.wikimedia.org/wikipedia/commons/2/26/Digastricus.png - + - + @@ -91991,14 +92068,14 @@ - + anterior belly - mandibular division of the trigeminal via the mylohyoid nerve; posterior belly - facial nerve dbpedia - + Orangutan DOI:10.1007/BF02547558 Intermediate tendon dbpedia @@ -92077,8 +92154,8 @@ - - + + A muscle that arises by four tendinous slips from the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae and inserts into the inferior surface of the basilar part of the occipital bone.[WP,modified]. flexion of neck at atlanto-occipital joint AAO:0010666 @@ -92100,11 +92177,11 @@ longus capitis muscle https://upload.wikimedia.org/wikipedia/commons/7/7d/Longus_capitis.png - + - + @@ -92117,14 +92194,14 @@ - + anterior tubercles of the transverse processes of the third fourth fifth and sixth cervical vertebrae dbpedia - + basilar part of the occipital bone dbpedia @@ -92179,8 +92256,8 @@ - - + + The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking right and left mylohyoid and the mandible. The mylohyoid is a pharyngeal arch I muscle that participates in oral/pharyngeal behaviors and is innervated by the nerve to mylohyoid and attaches to the midline raphe linking R and L mylohyoid and the mandible.[FEED] @@ -92205,11 +92282,11 @@ mylohyoid muscle https://upload.wikimedia.org/wikipedia/commons/9/92/Mylohyoid_muscle.PNG - + - + @@ -92222,14 +92299,14 @@ - + mylohyoid nerve from inferior alveolar branch of mandibular nerve V3 dbpedia - + body of hyoid bone and median raphe dbpedia @@ -92292,10 +92369,10 @@ - - - - + + + + The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by the first cervical nerve (C1). The geniohyoid is a muscle that attaches to the mandible and the hyoid apparatus and is innervated by C1.[FEED] @@ -92321,19 +92398,19 @@ geniohyoid muscle https://upload.wikimedia.org/wikipedia/commons/2/2c/Geniohyoid_muscle.PNG - + - + - + - + @@ -92346,27 +92423,27 @@ - + C1 via the hypoglossal nerve dbpedia - + C1 via the hypoglossal nerve dbpedia - + dbpedia - + dbpedia @@ -92424,7 +92501,7 @@ - + @@ -92437,7 +92514,7 @@ - + @@ -92450,8 +92527,8 @@ - - + + Intrinsic muscle of the larynx, innervated by the external division of the laryngeal nerve, a branch of the vagus nerve. It attaches to the anterolateral surface of the cricoid cartilage and the external surface of the thyroid cartilage. EMAPA:19270 @@ -92473,36 +92550,36 @@ cricothyroid muscle http://upload.wikimedia.org/wikipedia/commons/f/f4/Musculuscricothyreoideus.png - + - + - + - + external laryngeal branch of the vagus dbpedia - + Anterior and lateral cricoid cartilage dbpedia - + Inferior cornu and lamina of the thyroid cartilage dbpedia @@ -92553,7 +92630,7 @@ - + A fleshy subdivision of one side of the face bounded by an eye, ear and the nose. Surface structure that includes the scales, skin, and muscles that are located ventral and posterior to the eye.[TAO] buccal @@ -92579,14 +92656,14 @@ cheek https://upload.wikimedia.org/wikipedia/commons/a/a9/Chica_cachetona.jpg - + - + FMA-abduced-lr @@ -92650,7 +92727,7 @@ - + @@ -92686,14 +92763,14 @@ muscle of larynx - + - + prolog @@ -92755,8 +92832,8 @@ - - + + The inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]. This is a pharyngeal arch 4/6 muscle that is integral to the pharyngeal tube, participates in oral/pharyngeal behaviors, is innervated by the pharyngeal plexus of the vagus n. and attaches to the laryngeal cartilages and the midline raphe.[FEED] EMAPA:18965 @@ -92782,25 +92859,25 @@ inferior pharyngeal constrictor http://upload.wikimedia.org/wikipedia/commons/2/22/Musculusconstrictorpharyngisinferior.png - + - + - + cricoid and thyroid cartilage dbpedia - + Wikipedia @@ -92894,14 +92971,14 @@ - + - + Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. Either of a pair of lingual muscles with origin in the mandible, with insertion to the lingual fascia below the mucous membrane and epiglottis, with nerve supply from the hypoglossal nerve, and whose action depresses and protrudes the tongue. [TFD][VHOG] @@ -92931,11 +93008,11 @@ genioglossus muscle http://upload.wikimedia.org/wikipedia/commons/7/7e/Genioglossus.png - + - + @@ -92948,13 +93025,13 @@ - + EHDAA2 - + Wikipedia @@ -93059,7 +93136,7 @@ - + @@ -93089,7 +93166,7 @@ hyoglossus muscle http://upload.wikimedia.org/wikipedia/commons/7/7e/Hyoglossus.png - + @@ -93102,7 +93179,7 @@ - + lingual process in horse dbpedia @@ -93156,8 +93233,8 @@ - - + + The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]. Styloglossus is a muscle that attaches to the tongue and stylohyal and is innervated by Cranial Nerve XII.[FEED] EMAPA:18279 @@ -93174,11 +93251,11 @@ styloglossus http://upload.wikimedia.org/wikipedia/commons/1/16/Styloglossus.png - + - + @@ -93191,13 +93268,13 @@ - + dbpedia - + tip and sides of tongue dbpedia @@ -93236,9 +93313,9 @@ - - - + + + The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]. Palatoglossus is a muscle that attaches to the soft palate and the tongue and is innervated by Cranial Nerve X via the pharyngeal plexus.[FEED] @@ -93261,35 +93338,35 @@ http://upload.wikimedia.org/wikipedia/commons/6/6e/Gray1014.png http://upload.wikimedia.org/wikipedia/commons/c/c7/Gray1028.png - + - + - + - + Wikipedia - + aponeurosis dbpedia - + dbpedia @@ -93329,7 +93406,7 @@ - + @@ -93342,7 +93419,7 @@ - + @@ -93374,7 +93451,7 @@ extrinsic muscle of tongue - + @@ -93387,7 +93464,7 @@ - + check palatoglossus Wikipedia @@ -93434,7 +93511,7 @@ - + @@ -93450,8 +93527,8 @@ - - + + The intrinsic tongue muscles are an integral part of the tongue and completely contained within the tongue that are innervated by Cranial Nerve XII. The intrinsic tongue muscles are an integral part of the tongue that are innervated by Cranial Nerve XII.[FEED] @@ -93471,11 +93548,11 @@ intrinsic muscle of tongue - + - + @@ -93488,14 +93565,14 @@ - + FEED Wikipedia - + EHDAA2 @@ -93552,7 +93629,7 @@ - + A muscle innervated by a facial nerve. FMA:46751 @@ -93587,14 +93664,14 @@ facial muscle http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray378.png - + - + FEED Wikipedia @@ -93698,10 +93775,10 @@ - - - - + + + + @@ -93730,19 +93807,19 @@ orbicularis oculi muscle http://upload.wikimedia.org/wikipedia/commons/e/e2/Gray379.png - + - + - + - + @@ -93755,26 +93832,26 @@ - + branches of the facial nerve and Zygomatic branches of Facial Nerve dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -93818,7 +93895,7 @@ - + @@ -93828,8 +93905,8 @@ - - + + @@ -93890,24 +93967,24 @@ olfactory nerve http://upload.wikimedia.org/wikipedia/commons/b/be/Gray771.png - + - + - + ISBN:0471888893 - + ISBN:0471888893 @@ -94034,8 +94111,8 @@ - - + + The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]. EMAPA:37503 FMA:46805 @@ -94051,11 +94128,11 @@ levator labii superioris http://upload.wikimedia.org/wikipedia/commons/8/8f/Levator_labii_superioris.png - + - + @@ -94068,14 +94145,14 @@ - + Skin and muscle of the upper lip dbpedia - + Skin and muscle of the upper lip dbpedia @@ -94113,10 +94190,10 @@ - - - - + + + + A muscle of facial expression, innervated by the facial nerve, attached to the skin of the lower lip, orbicularis oris muscle, and mandible, and superficial and lateral to the mentalis muscle. See Diogo et al., 2009; Burrows et al., 2011). EMAPA:37516 FMA:46816 @@ -94131,19 +94208,19 @@ depressor labii inferioris http://upload.wikimedia.org/wikipedia/commons/9/96/Depressor_labii_inferioris.png - + - + - + - + @@ -94156,27 +94233,27 @@ - + FMA-abduced-lr - + oblique line of the mandible between the symphysis and the mental foramen dbpedia - + integument of the lower lip Orbicularis oris fibers its fellow of the opposite side dbpedia - + integument of the lower lip Orbicularis oris fibers its fellow of the opposite side dbpedia @@ -94262,8 +94339,8 @@ - - + + The buccinator is a muscle that is attached to the mandible, skin, pterygomandibular raphe and maxilla, and is innervated by Cranial Nerve VII and participates in oropharyngeal behavior. logical definition provided by FEED @@ -94287,25 +94364,25 @@ buccinator muscle http://upload.wikimedia.org/wikipedia/commons/d/df/Buccinator.jpg - + - + - + from the alveolar processes of the maxillary bone and mandible temporomandibular joint dbpedia - + dbpedia says: in the fibers of the orbicularis oris FEED @@ -95144,7 +95221,7 @@ - + An unpaired vein which in humans arises from the right ascending lumbar vein or the vena cava, enters the thorax through the aortic orifice in the diaphragm, and terminates in the superior vena cava; unlike humans, mice have a single and left-sided azygos vein that develops from the paired embryonic cardinal venous system and drains most of the right and left thoracic walls into the left anterior vena cava[MP]. check development relationships in different species @@ -95167,14 +95244,14 @@ azygos vein https://upload.wikimedia.org/wikipedia/commons/b/b4/Azygos_vein.png - + - + ISBN:0443065837 @@ -95204,7 +95281,7 @@ - + @@ -95235,14 +95312,14 @@ auricular muscle http://upload.wikimedia.org/wikipedia/commons/d/d2/Gray906.png - + - + MA @@ -95368,7 +95445,7 @@ - + @@ -95387,9 +95464,9 @@ - - - + + + Pharyngeal arch 1 muscle that participates in oral/pharyngeal behaviors, is innervated by masseteric nerve branches of the trigeminal nerve (CN V), and attaches to mandible and zygomatic arch. The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] @@ -95422,19 +95499,19 @@ https://github.com/obophenotype/uberon/issues/540 http://upload.wikimedia.org/wikipedia/commons/7/78/Illu_head_neck_muscle.jpg - + - + - + - + @@ -95447,27 +95524,27 @@ - + FMA - + zygomatic arch and maxilla dbpedia - + zygomatic arch and maxilla dbpedia - + FEED @@ -95521,8 +95598,8 @@ - - + + Pharyngeal arch 1 muscle that is innervated by the deep temporal branches of the trigeminal nerve and attaches to the wall of the braincase (including the cranial vault) and mandible. Pharyngeal arch 1 muscle that is innervated by the deep temporal nerves and attaches to the wall of the braincase and mandible.[FEED] @@ -95553,25 +95630,25 @@ temporalis muscle http://upload.wikimedia.org/wikipedia/commons/d/d3/Gray382.png - + - + - + coronoid process of the mandible. dbpedia - + dbpedia @@ -95662,7 +95739,7 @@ - + The muscle that stabilizes the stapes bone. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]. The depressor mandibulae of tetrapods, which opens the jaws, is the homologue of the levator operculi and epihyoidean. In mammals, the depressor mandibulae evolves into the stapedius (...).[well established][VHOG] @@ -95686,14 +95763,14 @@ stapedius muscle http://upload.wikimedia.org/wikipedia/commons/6/65/Musculusstapedius.png - + - + neck of stapes dbpedia @@ -95751,7 +95828,7 @@ - + @@ -95764,8 +95841,8 @@ - - + + The larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]. The division of the adductor mandibulae in the various lines of tetrapod evolution correlates with divergences in their methods of feeding. (...) As the jaws become stronger and their movements more complex in the line of evolution toward mammals, the adductor complex becomes divided into several distinct muscles (temporalis, masseter, pterygoideus, tensor tympani, tensor veli palati).[well established][VHOG] @@ -95794,35 +95871,35 @@ tensor tympani http://upload.wikimedia.org/wikipedia/commons/8/82/Gray912.png - + - + - + - + medial pterygoid nerve from the mandibular nerve dbpedia - + dbpedia - + handle of the malleus dbpedia @@ -95883,9 +95960,9 @@ - - - + + + Skeletal muscle derived from cranial mesoderm and controls eye movements. todo - resolve discrepancies in which muscles are considered extra-ocular @@ -95930,34 +96007,34 @@ extra-ocular muscle http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg - + - + - + - + EHDAA2 - + HPO:pr - + EHDAA2 @@ -96065,7 +96142,7 @@ - + The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]. @@ -96098,7 +96175,7 @@ medial rectus extraocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -96111,7 +96188,7 @@ - + inferior division of the oculomotor nerve dbpedia @@ -96182,7 +96259,7 @@ - + The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]. @@ -96217,7 +96294,7 @@ lateral rectus extra-ocular muscle http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + @@ -96230,7 +96307,7 @@ - + dbpedia @@ -96310,7 +96387,7 @@ - + @@ -96338,16 +96415,10 @@ levator palpebrae superioris http://upload.wikimedia.org/wikipedia/commons/e/e8/Eyemuscles.png - + - - - - - FMA - @@ -96366,6 +96437,12 @@ FMA + + + + + FMA + @@ -96375,7 +96452,7 @@ - + The ciliary muscle is a ring of smooth muscle in the middle layer of the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]. BTO:0000654 @@ -96398,7 +96475,7 @@ ciliary muscle http://upload.wikimedia.org/wikipedia/commons/2/28/Gray872.png - + @@ -96417,7 +96494,7 @@ - + FMA @@ -96534,10 +96611,10 @@ - - - - + + + + A sphincter muscle that is part of the iris. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted] WP says: It is found in vertebrates and some cephalopods; this class refers to the vertebrate structure @@ -96572,19 +96649,19 @@ sphincter pupillae http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png - + - + - + - + @@ -96597,27 +96674,27 @@ - + ISBN:0781772214 - + encircles iris dbpedia - + encircles iris dbpedia - + dbpedia @@ -96724,10 +96801,10 @@ - - - - + + + + A smooth muscle of the eye, running radially in the iris that functions as a dilator. [WP,unvetted]. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on alpha1-receptors. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina @@ -96764,19 +96841,19 @@ dilatator pupillae http://upload.wikimedia.org/wikipedia/commons/2/2f/Gray878.png - + - + - + - + @@ -96789,27 +96866,27 @@ - + ISBN:0781772214 - + outer margins of iris dbpedia - + inner margins of iris dbpedia - + dbpedia @@ -97022,7 +97099,7 @@ - + @@ -97050,14 +97127,14 @@ lingual artery https://upload.wikimedia.org/wikipedia/commons/3/3c/Lingual_artery.PNG - + - + FMA-abduced-lr @@ -97120,7 +97197,7 @@ - + A branch of the lingual artery that supplies the sublingual gland. Check grouping with amphibian structure of the same name @@ -97143,14 +97220,14 @@ sublingual artery http://upload.wikimedia.org/wikipedia/commons/7/7a/Gray559.png - + - + FMA @@ -97809,8 +97886,8 @@ - - + + The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]. EMAPA:37113 @@ -97834,25 +97911,25 @@ central retinal artery https://upload.wikimedia.org/wikipedia/commons/5/59/Gray514_updated.png - + - + - + proximal portion ISBN:0781772214 - + FMA @@ -97968,7 +98045,7 @@ - + The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]. EMAPA:37094 @@ -97986,14 +98063,14 @@ lacrimal artery http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png - + - + FMA @@ -98091,7 +98168,7 @@ - + One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis. @@ -98114,14 +98191,14 @@ anterior cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA WP @@ -98277,7 +98354,7 @@ - + The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]. BTO:0005206 @@ -98301,14 +98378,14 @@ middle cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA WP @@ -98345,7 +98422,7 @@ - + @@ -98358,8 +98435,8 @@ - - + + One of a pair of right-sided and left-sided blood vessels in the circle of Willis. It connects the three cerebral arteries of the same side. Anteriorly, it is one portion of the terminal trifurcation of the internal carotid artery. The anterior cerebral artery and the middle cerebral artery are the other two branches of the trifurcation. Posteriorly, it communicates with the posterior cerebral artery. @@ -98390,24 +98467,24 @@ posterior communicating artery http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + - + FMA-abduced-lr - + FMA ZFA @@ -98653,8 +98730,8 @@ - - + + A major lymphatic vessel that drains lymph from the lower body, left appendage, and left thorax into the junction of the left jugular and subclavian veins. placement of the ZFA class here is dubious @@ -98683,24 +98760,24 @@ thoracic duct http://upload.wikimedia.org/wikipedia/commons/7/75/Gray599.png - + - + - + TAO - + EHDAA2 @@ -98791,7 +98868,7 @@ - + A major artery that supplues the hindbrain and runs along the ventral keel of the hindbrain. Artery that runs along the ventral keel of the hindbrain. It lies between the primordial hindbrain channels(PHBC). It irrigates the hindbrain and is connected, through the hindbrain, to the PHBC by the central arteries. @@ -98822,14 +98899,14 @@ basilar artery http://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + EHDAA2 @@ -98885,7 +98962,7 @@ - + The major artery of the midbrain, which crosses the midbrain medially to meet its partner the mesencephalic vein. review this term, check taxon scope @@ -98902,14 +98979,14 @@ mesencephalic artery - + - + ZFA @@ -99054,7 +99131,7 @@ - + @@ -99081,14 +99158,14 @@ posterior cerebral artery https://upload.wikimedia.org/wikipedia/commons/2/2e/Circle_of_Willis_en.svg - + - + FMA-abduced-lr @@ -99446,10 +99523,10 @@ - - - - + + + + The first major branch of the abdominal aorta. EHDAA2:0004519 @@ -99481,44 +99558,44 @@ celiac artery http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png - + - + - + - + - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 - + ISBN:0073040584 @@ -99687,7 +99764,7 @@ - + The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]. EMAPA:18636 @@ -99706,14 +99783,14 @@ superior sagittal sinus https://upload.wikimedia.org/wikipedia/commons/b/bd/Gray488_blue.gif - + - + cjm @@ -99782,7 +99859,7 @@ - + @@ -99838,14 +99915,14 @@ oculomotor nerve http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png - + - + Wikipedia @@ -100168,7 +100245,7 @@ - + @@ -100194,7 +100271,6 @@ EMAPA:17576 FMA:50866 GAID:726 - HBA:9322 MA:0001100 MBA:901 MESH:D014276 @@ -100230,14 +100306,14 @@ trigeminal nerve https://upload.wikimedia.org/wikipedia/commons/9/99/Gray778_Trigeminal.png - + - + Wikipedia @@ -100361,8 +100437,8 @@ - - + + @@ -100420,25 +100496,25 @@ abducens nerve https://upload.wikimedia.org/wikipedia/commons/2/29/Abducens_nerve1.png - + - + - + found in all vertebrates except lampreys and hagfishes Wikipedia - + Wikipedia @@ -100550,15 +100626,15 @@ - + - - + + @@ -100620,34 +100696,34 @@ facial nerve http://upload.wikimedia.org/wikipedia/commons/1/1f/Cranial_nerve_VII.svg - + - + - + - + ZFA - + Wikipedia - + Wikipedia @@ -100789,7 +100865,7 @@ - + @@ -100854,14 +100930,14 @@ vestibulocochlear nerve http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png - + - + ISBN:0471888893 @@ -100976,7 +101052,7 @@ - + @@ -100998,7 +101074,6 @@ EMAPA:17268 FMA:50870 GAID:827 - HBA:9334 MA:0001093 MBA:808 MESH:D005930 @@ -101032,14 +101107,14 @@ glossopharyngeal nerve http://upload.wikimedia.org/wikipedia/commons/5/5e/Gray791.png - + - + motor Wikipedia @@ -101201,7 +101276,6 @@ EMAPA:17269 FMA:50871 GAID:828 - HBA:9343 MA:0001094 MBA:813 MESH:D007002 @@ -101519,7 +101593,7 @@ - + The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]. Vein which collects blood from muscles of the head and drains into the external jugular vein.[AAO] @@ -101543,14 +101617,14 @@ facial vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101619,7 +101693,7 @@ - + The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]. EMAPA:37195 @@ -101637,14 +101711,14 @@ supraorbital vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101685,7 +101759,7 @@ - + A vein in the chin that is connected to the sublingual and anterior jugular veins and drains into the facial vein. EMAPA:37188 @@ -101699,14 +101773,14 @@ submental vein - + - + FMA/obol @@ -101734,7 +101808,7 @@ - + The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]. @@ -101755,14 +101829,14 @@ retromandibular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -101810,7 +101884,7 @@ - + The superficial temporal vein is a vein of the side of the head. [WP,unvetted]. BTO:0003748 @@ -101829,14 +101903,14 @@ superficial temporal vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA Wikipedia @@ -101872,7 +101946,7 @@ - + A temporal vein that arises near the lateral angle of the eye; joins the superficial temporal veins to form the retromandibular vein. EMAPA:37176 @@ -101884,14 +101958,14 @@ middle temporal vein - + - + FMA TFD @@ -101979,7 +102053,7 @@ - + A vein that consists of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]. in horses, a branch of the external jugular gives off the occipital and caudal auricular vein @@ -101997,14 +102071,14 @@ maxillary vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -102088,7 +102162,7 @@ - + The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]. EMAPA:37132 @@ -102105,14 +102179,14 @@ anterior auricular vein http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray557.png - + - + FMA @@ -102275,9 +102349,9 @@ - - - + + + The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5-S2. [WP,unvetted]. A set of muscles in FMA, a single organ in MA @@ -102299,34 +102373,34 @@ triceps surae http://upload.wikimedia.org/wikipedia/commons/5/57/Illu_lower_extremity_muscles.jpg - + - + - + - + dbpedia - + dbpedia - + dbpedia @@ -102449,12 +102523,12 @@ - - - - - - + + + + + + The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]. BTO:0000867 EMAPA:36255 @@ -102475,64 +102549,64 @@ tibialis posterior http://upload.wikimedia.org/wikipedia/commons/9/92/Gray442.png - + - + - + - + - + - + - + dbpedia - + dbpedia - + dbpedia - + dbpedia - + dbpedia - + dbpedia @@ -102853,8 +102927,8 @@ - - + + The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]. EFO:0004271 @@ -102876,25 +102950,25 @@ central retinal vein - + - + - + proximal portion ISBN:0781772214 - + FMA/obol @@ -103007,7 +103081,7 @@ - + @@ -103065,7 +103139,7 @@ trigeminal ganglion http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png - + @@ -103078,7 +103152,7 @@ - + Bgee:AN @@ -103202,11 +103276,11 @@ - - - - - + + + + + @@ -103237,23 +103311,23 @@ occipital bone http://upload.wikimedia.org/wikipedia/commons/2/27/Gray194.png - + - + - + - + - + @@ -103266,32 +103340,32 @@ - + FMA - + basi paired exo and supra occipital bones MA-modified - + interparietal (postparietal) - + WP - + PMID:11523816 @@ -103353,10 +103427,10 @@ - - - - + + + + An unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended. part of viscerocranium (facial skeleton) in FMA @@ -103385,19 +103459,19 @@ sphenoid bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + - + - + - + @@ -103410,25 +103484,25 @@ - + orbito pre and basi sphenoid - + pterygoid process - + alisphenoid - + cjm @@ -103483,9 +103557,9 @@ - - - + + + The large, irregular bone located at the base and side of the skull; consists of three parts at birth: squamous, tympanic, and petrous. In many mammals, as in humans, the petrosal, ectotympanic and squamosal bones synostose to form the temporal bone + styloid process @@ -103512,15 +103586,15 @@ temporal bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + - + - + @@ -103533,20 +103607,20 @@ - + petrosal - + squamosal plus angular temporal series - + styloid process @@ -103608,7 +103682,7 @@ - + @@ -103644,7 +103718,7 @@ ethmoid bone http://upload.wikimedia.org/wikipedia/commons/6/66/Illu_cranial_bones2.jpg - + @@ -103657,7 +103731,7 @@ - + definitional @@ -103730,15 +103804,15 @@ - + - - + + @@ -103761,6 +103835,7 @@ lachrymal bone lacrymal bone uberon + ectethmoid infraorbital 1 lachrymal bone - infraorbital 1 lacrimal - infraorbital 1 @@ -103774,15 +103849,15 @@ lacrimal bone http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray164.png - + - + - + @@ -103795,20 +103870,20 @@ - + orbital series ISBN:0073040584 - + FMA-abduced-lr - + ZFA-modified @@ -103840,6 +103915,12 @@ UMLS:C0222733 ncithesaurus:Lacrimal_Bone + + + + ectethmoid + UBERON:3010146 + @@ -106282,6 +106363,7 @@ The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve). resolve facial VII vs geniculate (see EHDAA2) + These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG] geniculate BAMS:GgVII @@ -106315,6 +106397,7 @@ internal genu UBERON:0001700 + @@ -106746,8 +106829,8 @@ this class was made obsolete as it conflated the facial skeleton with the splanchnocranium. The facial skeleton includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it) (See also notes for ethmoid bone). The splanchoncranium is the endoskeleton derived from pharyngeal arches. - UBERON:0008895 - UBERON:0011156 + + Wikipedia:Facial_skeleton uberon UBERON:0001704 @@ -112343,7 +112426,6 @@ EMAPA:37797 FMA:5731 GAID:721 - HBA:9337 MA:0001106 MBA:917 MESH:D014630 @@ -115174,8 +115256,8 @@ - UBERON:0000053 - UBERON:0000054 + + uberon UBERON:0001784 Obsoleted as it accidentally grouped macula and macula lutea @@ -115231,7 +115313,6 @@ EMAPA:17264 FMA:5865 GAID:802 - HBA:9299 MA:0000215 MBA:967 MESH:D003391 @@ -118331,6 +118412,7 @@ An intermingling of fiber fascicles from adjacent spinal nerves to form a network. + To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG] EHDAA2:0001899 EMAPA:16987 @@ -118346,6 +118428,7 @@ spinal nerve plexus uberon UBERON:0001813 + spinal nerve plexus @@ -135274,6 +135357,7 @@ A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia. + in MA this is part of the kidney but this leads to unsatisfiability EMAPA:29691 FMA:6283 @@ -135289,6 +135373,7 @@ uberon thoracic splanchnic nerve UBERON:0001964 + least splanchnic nerve @@ -139300,7 +139385,7 @@ A cable-like bundle of peripheral axons (the long, slender projections of neurons). A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons. Nerves are found only in the peripheral nervous system. In the central nervous system, the analogous structures are known as tracts[WP]. - UBERON:0001021 + Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve. UBERON:0003377 nerve part of peripheral nervous system @@ -140157,6 +140242,7 @@ The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]. check relationship with generic hypogastric nerve/plexus + EMAPA:19274 FMA:6642 MA:0001142 @@ -140170,6 +140256,7 @@ hypogastric plexus plexus hypogastricus inferior UBERON:0002013 + superior hypogastric nerve plexus http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png @@ -140218,6 +140305,7 @@ The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]. check relationship with generic hypogastric nerve/plexus + EMAPA:19275 FMA:6643 MA:0001141 @@ -140235,6 +140323,7 @@ uberon plexus hypogastricus inferior UBERON:0002014 + inferior hypogastric nerve plexus http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png @@ -140801,7 +140890,6 @@ FMA:6720 FMA:80284 GAID:825 - HBA:9340 MA:0001088 MBA:717 MESH:D000055 @@ -141529,6 +141617,7 @@ The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]. + EMAPA:37618 FMA:67533 MA:0001162 @@ -141540,6 +141629,7 @@ plexus caroticus internus uberon UBERON:0002024 + internal carotid nerve plexus http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray840.png @@ -161818,6 +161908,7 @@ A continuation of the neuron projection bundle component of a nerve inside, crossing or immediately outside the central nervous system. We consider cranial nerve roots to be primarily CNS structures, but model spinal nerve roots as PNS structures, due to the existence of ganglia on the roots. + The continuation of the neurite bundle and associated glia of a nerve, inside the central nervous system[FBbt:00007602, FBC:DOS]. FMA has 'central zone of nerve' which is the superclass of cranial nerve tracts, which the FMA sometimes calls roots FMA:5981 @@ -161831,6 +161922,7 @@ radix nervi uberon UBERON:0002211 + nerve root @@ -166306,6 +166398,7 @@ The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion. + The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve[Wikipedia:Anterior_root_of_spinal_nerve]. FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence. ventral root @@ -166339,6 +166432,7 @@ ventral roots ventral spinal nerve root UBERON:0002260 + @@ -170359,7 +170453,7 @@ A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain. - FMA:82553 + Wikipedia:Ventricle_of_the_larynx uberon UBERON:0002300 @@ -171142,7 +171236,7 @@ - UBERON:0004083 + uberon UBERON:0002311 obsoleted based on neuronames:681 @@ -177395,7 +177489,6 @@ Either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx. the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region - BTO:0001387 CALOHA:TS-1053 EFO:0001401 @@ -177416,7 +177509,6 @@ Mandel UBERON:0002372 - tonsil @@ -177474,6 +177566,7 @@ Tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]. + tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches tonsil BTO:0004714 @@ -177495,6 +177588,7 @@ tonsilla palatina UBERON:0002373 + palatine tonsil https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg @@ -183725,7 +183819,7 @@ - UBERON:0006964 + uberon UBERON:0002431 obsolete pars anterior @@ -188170,6 +188264,7 @@ The largest cutaneous branch of the femoral nerve. [WP,unvetted]. + EMAPA:36625 FMA:45262 MA:0002761 @@ -188178,6 +188273,7 @@ uberon nervus saphenus UBERON:0002475 + saphenous nerve http://upload.wikimedia.org/wikipedia/commons/d/de/Gray827.png @@ -194120,10 +194216,10 @@ Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. - EFO:0000950 - MAT:0000277 - MIAA:0000277 - ZFA:0001123 + + + + axial fin skeleton unpaired fin skeleton uberon @@ -194277,7 +194373,7 @@ - WBbt:0005332 + EFO:0000901 MAT:0000344 MIAA:0000344 @@ -195072,8 +195168,8 @@ A multi-tissue structure that is part of a superior colliculus. - BIRNLEX:1014 - FMA:85592 + + uberon segment of superior colliculus superior colliculus segment @@ -196851,8 +196947,8 @@ A regional part of brain that is part of a inferior olivary complex [Automatically generated definition]. - BIRNLEX:1052 - FMA:71259 + + inferior olivary complex segment segment of inferior olivary complex uberon @@ -197129,8 +197225,8 @@ A regional part of brain that is part of a medullary reticular formation [Automatically generated definition]. - BIRNLEX:1060 - FMA:73730 + + medullary reticular formation segment segment of medullary reticular formation uberon @@ -197657,8 +197753,8 @@ A regional part of brain that is part of a vestibular nuclear complex [Automatically generated definition]. - BIRNLEX:1080 - FMA:71267 + + segment of vestibular nuclear complex vestibular nuclear complex segment uberon @@ -200411,11 +200507,11 @@ in GO - BIRNLEX:1152 - FMA:67368 - GAID:748 - GO:0033268 - NCIT:C33172 + + + + + Wikipedia:Node_of_ranvier ranvier node ranvier's node @@ -201224,11 +201320,11 @@ A regional part of brain that is part of a cerebral cortex [Automatically generated definition]. TODO - check MA term - BIRNLEX:1173 - EMAPA:35589 - FMA:242193 - MA:0000187 - SCTID:119408004 + + + + + UBERON:0003208 cerebral cortex part neocortex region @@ -201416,8 +201512,8 @@ A regional part of brain that is part of a cochlear nuclear complex [Automatically generated definition]. - BIRNLEX:1195 - FMA:83952 + + cochlear nuclear complex segment segment of cochlear nuclear complex uberon @@ -203135,8 +203231,8 @@ A multi-tissue structure that is part of a midbrain tegmentum. - BIRNLEX:1227 - FMA:62399 + + midbrain tegmentum segment segment of midbrain tegmentum uberon @@ -207343,8 +207439,8 @@ A regional part of brain that is part of a medullary raphe nuclear complex [Automatically generated definition]. - BIRNLEX:1349 - FMA:83951 + + medullary raphe nuclear complex segment segment of medullary raphe nuclear complex uberon @@ -207378,9 +207474,9 @@ A regional part of brain that is part of a medulla oblongata [Automatically generated definition]. - BIRNLEX:1355 - FMA:71011 - SCTID:119241003 + + + medullary oblongata segment segment of medulla oblongata uberon @@ -207585,8 +207681,8 @@ A regional part of brain that is part of a metencephalon [Automatically generated definition]. - BIRNLEX:1361 - FMA:67942 + + metencephalon subdivision segment of metencephalon uberon @@ -214079,9 +214175,9 @@ A regional part of brain that is part of a thalamus [Automatically generated definition]. - BIRNLEX:1517 - FMA:67705 - SCTID:119406000 + + + segment of thalamus thalamus segment uberon @@ -216871,8 +216967,8 @@ A regional part of brain that is part of a epithalamus [Automatically generated definition]. - BIRNLEX:1607 - FMA:62013 + + epithalamus segment segment of epithalamus uberon @@ -219121,8 +219217,8 @@ - BIRNLEX:1672 - FMA:77617 + + GAID:669 uberon UBERON:0002777 @@ -219364,8 +219460,8 @@ A regional part of brain that is part of a forebrain [Automatically generated definition]. - BIRNLEX:1677 - FMA:61996 + + forebrain segment segment of forebrain uberon @@ -219745,9 +219841,9 @@ A regional part of brain that is part of a diencephalon [Automatically generated definition]. - BIRNLEX:1685 - FMA:62005 - SCTID:119264001 + + + diencephalon segment uberon UBERON:0002784 @@ -219774,8 +219870,8 @@ A multi-tissue structure that is part of a lateral hypothalamic area. - BIRNLEX:1687 - FMA:62312 + + lateral hypothalamic region segment segment of lateral hypothalamic region uberon @@ -220277,8 +220373,8 @@ A regional part of brain that is part of a posterior hypothalamic region [Automatically generated definition]. - BIRNLEX:1697 - FMA:62311 + + posterior hypothalamic region segment segment of posterior hypothalamic region uberon @@ -220394,8 +220490,8 @@ A regional part of brain that is part of a telencephalon [Automatically generated definition]. - BIRNLEX:1700 - FMA:62374 + + segment of telencephalon telencephalon segment uberon @@ -230649,8 +230745,8 @@ A regional part of brain that is part of a inferior colliculus [Automatically generated definition]. - BIRNLEX:4036 - FMA:77871 + + inferior colliculus segment segment of inferior colliculus uberon @@ -233451,10 +233547,10 @@ - UBERON:0002037 - BIRNLEX:748 - FMA:256150 - SCTID:119242005 + + + + segment of cerebellum uberon subdivision of cerebellum @@ -233722,9 +233818,9 @@ A regional part of brain that is part of a midbrain [Automatically generated definition]. - BIRNLEX:763 - FMA:61997 - SCTID:119239004 + + + midbrain segment segment of midbrain uberon @@ -233758,8 +233854,8 @@ A regional part of brain that is part of a intermediate hypothalamic region [Automatically generated definition]. - BIRNLEX:767 - FMA:62310 + + intermediate hypothalamic region segment segment of intermediate hypothalamic region uberon @@ -235086,8 +235182,8 @@ A regional part of brain that is part of a midbrain tectum [Automatically generated definition]. - BIRNLEX:795 - FMA:62398 + + midbrain tectum segment segment of midbrain tectum uberon @@ -237436,12 +237532,12 @@ - GO:0005883 - BIRNLEX:846 - FMA:63859 - NCIT:C13263 - NIF_Subcellular:sao1316272517 - UMLS:C0027834 + + + + + + Wikipedia:Neurofilament neuronal intermediate filament uberon @@ -238633,14 +238729,14 @@ - GO:0005882 - BIRNLEX:879 - FMA:63851 - GAID:1079 - MESH:A11.284.195.190.750.410 - NCIT:C13248 - NIF_Subcellular:sao952483289 - UMLS:C0021770 + + + + + + + + Wikipedia:Intermediate_filament uberon UBERON:0003000 @@ -238765,13 +238861,13 @@ - FMA:63850 - GAID:1080 - GO:0005884 - MESH:A11.284.195.190.750.510 - NCIT:C13255 - NIF_Subcellular:sao2006047981 - UMLS:C0025979 + + + + + + + Wikipedia:Microfilament actin filament microfilament @@ -238784,7 +238880,7 @@ - UMLS:C0025979 + ncithesaurus:Actin_Filament @@ -240729,7 +240825,7 @@ - FMA:68603 + uberon UBERON:0003022 obsolete lobe parts of cerebral cortex @@ -241930,8 +242026,8 @@ - BIRNLEX:959 - FMA:72547 + + segment of cerebellar white matter uberon UBERON:0003035 @@ -243409,8 +243505,8 @@ A regional part of brain that is part of a pretectal region [Automatically generated definition]. - BIRNLEX:993 - FMA:74519 + + pretectal region segment segment of pretectal region uberon @@ -243444,9 +243540,9 @@ A regional part of brain that is part of a hypothalamus [Automatically generated definition]. - BIRNLEX:995 - FMA:67706 - SCTID:360454003 + + + hypothalamus segment segment of hypothalamus uberon @@ -251600,9 +251696,9 @@ - FBbt:00005751 - HAO:0000409 - TGMA:0000090 + + + uberon UBERON:0003132 obsolete arthropod hypopharynx @@ -251905,8 +252001,8 @@ - FBbt:00000002 - HAO:0000988 + + uberon UBERON:0003136 arthropod specific groupings belong in separate ontology @@ -251919,8 +252015,8 @@ - FBbt:00000009 - HAO:0000104 + + uberon UBERON:0003137 arthropod specific groupings belong in separate ontology @@ -251933,8 +252029,8 @@ - FBbt:00000016 - HAO:0001013 + + uberon UBERON:0003138 arthropod specific groupings belong in separate ontology @@ -251947,8 +252043,8 @@ - FBbt:00001728 - HAO:0000462 + + uberon UBERON:0003139 arthropod specific groupings belong in separate ontology @@ -251961,8 +252057,8 @@ - FBbt:00001741 - HAO:0000463 + + uberon UBERON:0003140 arthropod specific groupings belong in separate ontology @@ -251975,8 +252071,8 @@ - FBbt:00001746 - HAO:0000460 + + uberon UBERON:0003141 obsolete larval abdomen @@ -252129,8 +252225,8 @@ - FBbt:00003005 - HAO:0000089 + + uberon UBERON:0003144 arthropod specific groupings belong in separate ontology @@ -252143,8 +252239,8 @@ - FBbt:00003018 - HAO:0000090 + + uberon UBERON:0003145 arthropod specific groupings belong in separate ontology @@ -252157,8 +252253,8 @@ - FBbt:00003023 - HAO:0000088 + + uberon UBERON:0003146 obsolete adult arthropod abdomen @@ -252171,8 +252267,8 @@ That part of the integument of an insect which surrounds the spiracles. - FBbt:00003121 - HAO:0000712 + + uberon rim UBERON:0003147 @@ -252199,8 +252295,8 @@ Hardened portions of arthropod exoskeletons. - FBbt:00004475 - HAO:0000909 + + Wikipedia:Sclerite uberon plate @@ -252227,8 +252323,8 @@ - FBbt:00004476 - HAO:0001005 + + abdominal tergite uberon UBERON:0003149 @@ -252248,8 +252344,8 @@ - FBbt:00004477 - HAO:0000955 + + abdominal sternite uberon UBERON:0003150 @@ -252269,8 +252365,8 @@ - FBbt:00004478 - HAO:0000345 + + uberon UBERON:0003151 arthropod specific groupings belong in separate ontology @@ -252284,8 +252380,8 @@ The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]. - FBbt:00004480 - HAO:0000716 + + uberon UBERON:0003152 arthropod specific groupings belong in separate ontology @@ -252339,8 +252435,8 @@ - FBbt:00004491 - HAO:0000371 + + uberon cheek UBERON:0003154 @@ -252396,8 +252492,8 @@ - FBbt:00004494 - HAO:0000790 + + uberon UBERON:0003156 arthropod specific groupings belong in separate ontology @@ -252410,8 +252506,8 @@ - FBbt:00004496 - HAO:0000776 + + uberon UBERON:0003157 arthropod specific groupings belong in separate ontology @@ -252424,8 +252520,8 @@ - FBbt:00004501 - HAO:0000999 + + uberon UBERON:0003158 arthropod specific groupings belong in separate ontology @@ -252438,8 +252534,8 @@ - FBbt:00004502 - HAO:0000126 + + uberon UBERON:0003159 arthropod specific groupings belong in separate ontology @@ -252452,8 +252548,8 @@ - FBbt:00004503 - HAO:0000768 + + uberon UBERON:0003160 arthropod specific groupings belong in separate ontology @@ -252548,8 +252644,8 @@ TODO - FBbt:00004520 - HAO:0000639 + + uberon UBERON:0003163 obsolete mouthpart @@ -252561,8 +252657,8 @@ - FBbt:00004521 - HAO:0000212 + + uberon UBERON:0003164 arthropod specific groupings belong in separate ontology @@ -252575,8 +252671,8 @@ - FBbt:00004526 - HAO:0000201 + + uberon atrium UBERON:0003165 @@ -252596,8 +252692,8 @@ - FBbt:00004534 - HAO:0000804 + + uberon theca UBERON:0003166 @@ -252617,8 +252713,8 @@ - FBbt:00004536 - HAO:0000457 + + uberon UBERON:0003167 arthropod specific groupings belong in separate ontology @@ -252631,8 +252727,8 @@ - FBbt:00004544 - HAO:0000534 + + uberon UBERON:0003168 arthropod specific groupings belong in separate ontology @@ -252645,8 +252741,8 @@ - FBbt:00004548 - HAO:0000195 + + uberon UBERON:0003169 arthropod specific groupings belong in separate ontology @@ -252659,8 +252755,8 @@ - FBbt:00004552 - HAO:0001006 + + uberon UBERON:0003170 arthropod specific groupings belong in separate ontology @@ -252673,8 +252769,8 @@ - FBbt:00004554 - HAO:0000303 + + uberon UBERON:0003171 arthropod specific groupings belong in separate ontology @@ -252687,8 +252783,8 @@ - FBbt:00004556 - HAO:0000299 + + uberon UBERON:0003172 arthropod specific groupings belong in separate ontology @@ -252701,8 +252797,8 @@ - FBbt:00004561 - HAO:0000853 + + uberon UBERON:0003173 arthropod specific groupings belong in separate ontology @@ -252715,8 +252811,8 @@ - FBbt:00004570 - HAO:0000367 + + uberon UBERON:0003174 arthropod specific groupings belong in separate ontology @@ -252729,8 +252825,8 @@ - FBbt:00004582 - HAO:0000815 + + uberon UBERON:0003175 arthropod specific groupings belong in separate ontology @@ -252743,8 +252839,8 @@ - FBbt:00004585 - HAO:0000120 + + uberon UBERON:0003176 arthropod specific groupings belong in separate ontology @@ -252757,8 +252853,8 @@ - FBbt:00004586 - HAO:0000758 + + uberon UBERON:0003177 arthropod specific groupings belong in separate ontology @@ -252771,8 +252867,8 @@ - FBbt:00004588 - HAO:0000786 + + uberon postscutellum UBERON:0003178 @@ -252792,8 +252888,8 @@ - FBbt:00004595 - HAO:0000726 + + uberon UBERON:0003179 arthropod specific groupings belong in separate ontology @@ -252806,8 +252902,8 @@ - FBbt:00004597 - HAO:0000094 + + uberon mesopleurite UBERON:0003180 @@ -252827,8 +252923,8 @@ - FBbt:00004601 - HAO:0000920 + + uberon UBERON:0003181 arthropod specific groupings belong in separate ontology @@ -252841,8 +252937,8 @@ - FBbt:00004603 - HAO:0000725 + + uberon UBERON:0003182 obsolete pleural suture @@ -252854,8 +252950,8 @@ - FBbt:00004604 - HAO:0000649 + + uberon UBERON:0003183 obsolete notopleural suture @@ -252867,8 +252963,8 @@ - FBbt:00004619 - HAO:0000547 + + uberon mesothoracic sternal apophysis UBERON:0003184 @@ -252888,8 +252984,8 @@ - FBbt:00004638 - HAO:0000592 + + uberon metathoracic sternal apophysis UBERON:0003185 @@ -252909,8 +253005,8 @@ - FBbt:00004641 - HAO:0000228 + + uberon UBERON:0003186 arthropod specific groupings belong in separate ontology @@ -252923,8 +253019,8 @@ - FBbt:00004653 - HAO:0000820 + + uberon UBERON:0003187 arthropod specific groupings belong in separate ontology @@ -252937,8 +253033,8 @@ - FBbt:00004654 - HAO:0000153 + + uberon UBERON:0003188 arthropod specific groupings belong in separate ontology @@ -252951,8 +253047,8 @@ - FBbt:00004658 - HAO:0001043 + + uberon UBERON:0003189 arthropod specific groupings belong in separate ontology @@ -252965,8 +253061,8 @@ - FBbt:00004659 - HAO:0000288 + + uberon UBERON:0003190 obsolete empodium @@ -252978,8 +253074,8 @@ - FBbt:00004730 - HAO:0000993 + + uberon UBERON:0003191 arthropod specific groupings belong in separate ontology @@ -252992,8 +253088,8 @@ - FBbt:00004737 - HAO:0000159 + + uberon UBERON:0003192 arthropod specific groupings belong in separate ontology @@ -253006,8 +253102,8 @@ - FBbt:00004744 - HAO:0000157 + + uberon UBERON:0003193 arthropod specific groupings belong in separate ontology @@ -253045,8 +253141,8 @@ - FBbt:00004765 - HAO:0000236 + + uberon UBERON:0003195 arthropod specific groupings belong in separate ontology @@ -253059,8 +253155,8 @@ - FBbt:00004769 - HAO:0001091 + + uberon intervein UBERON:0003196 @@ -253080,8 +253176,8 @@ - FBbt:00004770 - HAO:0000226 + + uberon UBERON:0003197 arthropod specific groupings belong in separate ontology @@ -253094,8 +253190,8 @@ - FBbt:00004850 - HAO:0000091 + + uberon UBERON:0003198 arthropod specific groupings belong in separate ontology @@ -253166,8 +253262,8 @@ - FBbt:00004920 - HAO:0000706 + + uberon UBERON:0003200 obsolete pedicel @@ -253245,8 +253341,8 @@ - FBbt:00005091 - HAO:0000142 + + uberon UBERON:0003203 arthropod specific groupings belong in separate ontology @@ -253259,8 +253355,8 @@ - FBbt:00005750 - HAO:0000301 + + uberon UBERON:0003204 arthropod specific groupings belong in separate ontology @@ -253273,9 +253369,9 @@ - FBbt:00005811 - HAO:0000151 - ncithesaurus:Articulation + + + uberon UBERON:0003205 incorrect grouping @@ -253288,9 +253384,9 @@ - FBbt:00005813 - FMA:75428 - HAO:0000143 + + + uberon UBERON:0003206 incorrect grouping @@ -253303,7 +253399,7 @@ - UBERON:0010758 + HAO:0000145 uberon UBERON:0003207 @@ -257346,8 +257442,8 @@ - EHDAA:2851 - EMAPA:17263 + + uberon UBERON:0003266 obsoleted pending formal definition of nerve, with explicit reference to PNS vs CNS. See https://github.com/obophenotype/mouse-anatomy-ontology/issues/6 @@ -257625,7 +257721,7 @@ - UBERON:0000378 + uberon UBERON:0003273 Merged as it was equivalent to parent - see https://github.com/obophenotype/uberon/issues/331 @@ -257710,7 +257806,7 @@ A skeletal system that is part of a embryo [Automatically generated definition]. - UBERON:0004288 + developmental tissue set of all bones developmental tissue set of bones of body developmental tissue skeletal system @@ -258531,7 +258627,7 @@ - UBERON:0002101 + uberon UBERON:0003285 obsolete limb of embryo @@ -262922,7 +263018,7 @@ - EMAPA:30901 + uberon UBERON:0003340 obsolete urethra of urogenital sinus @@ -265968,8 +266064,8 @@ - EMAPA:19107 - EMAPA:19144 + + uberon UBERON:0003385 obsolete skeletal muscle of mesenchyme @@ -271621,7 +271717,7 @@ A bone that is part of a chondrocranium [Automatically generated definition]. - UBERON:0011164 + UBERON:0004762 ZFA:0001544 uberon @@ -273061,7 +273157,7 @@ this class was obsoleted as it was defined inconsistently - UBERON:0011827 + uberon UBERON:0003486 obsolete mammary gland sebaceous gland @@ -277434,7 +277530,7 @@ - MA:0002741 + uberon UBERON:0003545 obsoleted as definition is unclear. cerebellar peduncle originally classified here but in ABA brainstem and cerbellum are spatially disjoint @@ -294461,6 +294557,7 @@ The major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia. + All carry sympathetic fibers except for the pelvic splanchnic nerves, which carry parasympathetic fibers BAMS:spn EMAPA:37959 @@ -294473,6 +294570,7 @@ splanchnic nerves visceral nerve UBERON:0003715 + splanchnic nerve @@ -294522,6 +294620,7 @@ A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch. + Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx[AAO:0010754]. recurrent nerve AAO:0010754 @@ -294538,6 +294637,7 @@ inferior laryngeal nerve ramus recurrens UBERON:0003716 + recurrent laryngeal nerve @@ -294904,6 +295004,7 @@ The lingual nerve is a branch of the mandibular nerve (CN V3), itself a branch of the trigeminal nerve, which supplies sensory innervation to the tongue. It also carries fibers from the facial nerve, which return taste information from the anterior two thirds of the tongue. + BAMS:5lg EMAPA:19168 FMA:53218 @@ -294917,6 +295018,7 @@ trigeminal nerve lingual branch uberon UBERON:0003721 + lingual nerve @@ -295274,6 +295376,7 @@ The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls. + FMA:5860 GAID:857 MESH:D013900 @@ -295286,6 +295389,7 @@ nervi thoracici pectoral nerve UBERON:0003726 + thoracic nerve @@ -301668,10 +301772,10 @@ Any muscle organ that is part of a body wall [Automatically generated definition]. - ANISEED:1235296 - BTO:0001863 - UBERON:0004462 - WBbt:0005813 + + + + uberon wall muscle UBERON:0003896 @@ -303547,7 +303651,7 @@ This term was obsoleted as it was previously defined midleadingly as 'A macula that is part of a cochlea'. - ZFA:0000116 + uberon UBERON:0003927 obsolete macula lagena @@ -310912,7 +311016,9 @@ - The external masculine genital organs, including the penis and scrotum. + The external masculine genital organs. + + BTO:0003097 EMAPA:30977 FMA:45642 @@ -310931,7 +311037,7 @@ - The external masculine genital organs, including the penis and scrotum. + The external masculine genital organs. MP:0009199 @@ -317870,7 +317976,7 @@ Joint in the leg. For example the knee, which separates the leg tibia and femur. - UBERON:0003657 + joint of leg uberon joint of lower limb @@ -327679,6 +327785,7 @@ A nerve that is part of a parasympathetic nervous system [Automatically generated definition]. + EHDAA2:0001401 EMAPA:17271 MA:0000224 @@ -327687,6 +327794,7 @@ nerve of parasympathetic nervous system uberon UBERON:0004293 + parasympathetic nerve @@ -332659,7 +332767,7 @@ - GO:0098846 + uberon UBERON:0004355 @@ -339077,7 +339185,7 @@ - UBERON:0000042 + This class was originally created to mirror the MA class of the same name; in MA this groups pericardium, pleura and periotoneal cavity lining and is better represented using concepts like serous membrane uberon UBERON:0004457 @@ -339097,7 +339205,7 @@ Either a cavity lining or the space it encloses. - UBERON:0005906 + uberon UBERON:0004458 obsolete body cavity or lining @@ -339907,8 +340015,8 @@ - FMA:74779 - UBERON:0004464 + + musculature of chest uberon chest musculature @@ -340209,7 +340317,7 @@ - FMA:71289 + muscle group of tongue muscles of tongue musculi linguae @@ -340592,7 +340700,7 @@ - FMA:33062 + iliocostalis muscle group iliocostalis muscles set set of iliocostalis muscles @@ -340625,7 +340733,7 @@ - FMA:22596 + uberon UBERON:0004484 obsolete splenius musculature @@ -342844,7 +342952,7 @@ - BSPO:0000000 + uberon UBERON:0004531 obsolete left side of organism @@ -342856,7 +342964,7 @@ - BSPO:0000007 + uberon UBERON:0004532 obsolete right side of organism @@ -344013,7 +344121,7 @@ this class was made obsolete, as uberon does not include 'Set of X' classes. For now, the FMA class for set of plantar digital arteries proper is under UBERON:0004540, but it is unclear if this is correct - FMA:71564 + arteriae digitales plantares propriae plantar digital arteries proper plantar digital arteries proper set @@ -349869,6 +349977,7 @@ DHBA:12865 DMBA:17739 FMA:52610 + HBA:9322 SCTID:280185007 TAO:0000192 ZFA:0000192 @@ -350083,6 +350192,7 @@ DHBA:12886 DMBA:17750 FMA:72632 + HBA:9343 UMLS:C0175555 neuronames:798 central part of hypoglossal nerve @@ -351197,8 +351307,8 @@ The term 'middle temporal visual area' was first used by Allman and Kaas (1971) for a region of the owl monkey brain located on the 'caudal third of the middle temporal gyrus.' Functionally, it contains 'a complete representation of the contralateral half of the visual field... This representation of the visual field (MT) corresponds to a histologically distinct area adjacent and rostral to area 19... The horizontal meridian divides MT into a lateral portion representing the upper visual quadrant and a medial portion representing the lower quadrant. The center of gaze is represented in the caudal portion of MT bordering area 19.'. - UBERON:0013552 - NLXANAT:20090308 + + middle temporal area uberon UBERON:0004685 @@ -356486,8 +356596,8 @@ Sliver of bone that invest part of or all the posterior aspect of each antorbital plane.[AAO] The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms).[ZFA] - AAO:0000372 - ZFA:0000620 + + uberon UBERON:0004748 obsolete autopalatine @@ -364239,7 +364349,7 @@ - UBERON:0003053 + uberon UBERON:0004860 obsolete brain ventricular zone @@ -380770,6 +380880,8 @@ An external genitalia that is part of a female reproductive system [Automatically generated definition]. + + in eutherians, this is known as the vulva in and composed of the mons pubis, the labia majora and minora, the clitoris, the vestibule of the vagina and its glands, and the opening of the urethra and of the vagina [MP:0003126] BTO:0003100 EMAPA:30984 @@ -380920,7 +381032,7 @@ - FBbt:00001668 + uberon UBERON:0005059 obsolete Drosophila lymph gland @@ -381469,7 +381581,7 @@ - UBERON:0011930 + uberon UBERON:0005073 obsolete preganglionic parasympathetic nervous system @@ -381481,7 +381593,7 @@ - UBERON:0011929 + uberon UBERON:0005074 obsolete postganglionic parasympathetic nervous system @@ -382705,8 +382817,10 @@ The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]. TODO - epithelium types + uberon UBERON:0005099 + short descending thin limb @@ -385812,7 +385926,7 @@ - MA:0000747 + uberon UBERON:0005180 obsolete lymph organ @@ -386027,7 +386141,7 @@ - UBERON:0004358 + uberon UBERON:0005188 obsolete caput epididymis @@ -386039,7 +386153,7 @@ - UBERON:0004359 + uberon UBERON:0005189 obsolete corpus epididymis @@ -386051,7 +386165,7 @@ - UBERON:0004360 + uberon UBERON:0005190 obsolete cauda epididymis @@ -386585,7 +386699,7 @@ - MA:0001937 + http://www.informatics.jax.org/cookbook/figures/figure97.shtml uberon UBERON:0005201 @@ -387394,7 +387508,7 @@ https://github.com/obophenotype/uberon/issues/3156 - UBERON:0005234 + uberon UBERON:0005216 Obsoleted because it is redundant with 'optic eminence ectoderm'. @@ -388409,7 +388523,7 @@ A forelimb that is part of an apical ectodermal ridge [Automatically generated definition]. - VHOG:0001064 + uberon UBERON:0005241 obsolete apical ectodermal ridge forelimb @@ -388428,7 +388542,7 @@ A hindlimb that is part of an apical ectodermal ridge [Automatically generated definition]. - VHOG:0001066 + uberon UBERON:0005242 obsolete apical ectodermal ridge hindlimb @@ -389540,7 +389654,7 @@ - VHOG:0000793 + uberon UBERON:0005264 obsolete midbrain neural fold @@ -389552,7 +389666,7 @@ - VHOG:0001211 + uberon UBERON:0005265 obsolete hindbrain neural fold @@ -389564,7 +389678,7 @@ - VHOG:0000628 + uberon UBERON:0005266 obsolete spinal cord neural fold @@ -390196,7 +390310,7 @@ - UBERON:0006904 + uberon cranial mesoderm UBERON:0005280 @@ -391369,7 +391483,7 @@ - UBERON:0003937 + uberon UBERON:0005300 obsolete reproductive gland @@ -391563,6 +391677,7 @@ The transition between the superior hypogastric plexus and the inferior hypogastric plexus. check plexus vs nerve. WP indicates it is a 'transition' + EMAPA:18225 FMA:77596 MA:0001140 @@ -391576,6 +391691,7 @@ uberon nervus hypogastricus UBERON:0005303 + hypogastric nerve http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png @@ -395523,6 +395639,7 @@ The upper ganglion of the vagus nerve located at the jugular foramen. + superior vagus X EMAPA:17156 FMA:6229 @@ -395543,6 +395660,7 @@ jugular ganglion vagus X superior ganglion UBERON:0005364 + superior vagus X ganglion @@ -401201,8 +401319,8 @@ - FMA:65553 - SCTID:429921001 + + autonomic division of peripheral nervous system autonomic part of peripheral nervous system divisio autonomica systematis nervosi peripherici @@ -402254,8 +402372,8 @@ - EHDAA2:0000541 - FMA:18650 + + polocytus primarius uberon UBERON:0005444 @@ -402456,8 +402574,8 @@ - UBERON:0006081 - UBERON:0006082 + + uberon UBERON:0005447 obsolete bladder fundus @@ -404534,8 +404652,8 @@ - EHDAA2:0001820 - FMA:18651 + + polocytus secundarius uberon UBERON:0005474 @@ -404636,6 +404754,7 @@ Trunk part of spinal nerve, where dorsal and ventral roots meet to form the spinal nerve, before branching off to dorsal and ventral rami. + EHDAA2:0001900 FMA:5929 spinal nerve (trunk) @@ -404643,6 +404762,7 @@ trunk of spinal nerve uberon UBERON:0005476 + spinal nerve trunk @@ -404976,8 +405096,8 @@ - FMA:20358 - SCTID:425803006 + + subdivision of thorax thoracic region thoracic subdivision @@ -405523,6 +405643,7 @@ The superior mesenteric plexus is a continuation of the lower part of the celiac plexus, receiving a branch from the junction of the right vagus nerve with the plexus. It surrounds the superior mesenteric artery, accompanies it into the mesentery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , pancreatic branches to the pancreas; intestinal branches to the small intestine; and ileocolic, right colic, and middle colic branches, which supply the corresponding parts of the great intestine. The nerves composing this plexus are white in color and firm in texture; in the upper part of the plexus close to the origin of the superior mesenteric artery is the superior mesenteric ganglion. + FMA:6639 SCTID:362493003 Wikipedia:Superior_mesenteric_plexus @@ -405530,6 +405651,7 @@ superior mesenteric nerve plexus uberon UBERON:0005488 + superior mesenteric plexus http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png @@ -410649,12 +410771,12 @@ Curated as it is indistinguishable from parent; See https://github.com/obophenotype/uberon/issues/1305 - EHDAA2:0001344 - EMAPA:16671 - EMAPA:16996 - EMAPA:16999 - UBERON:0003051 - VHOG:0000986 + + + + + + uberon UBERON:0005641 obsolete otocyst epithelium @@ -412535,7 +412657,7 @@ - EHDAA2:0001984 + uberon UBERON:0005683 obsolete telencephalon lateral ventricle @@ -413720,9 +413842,9 @@ - UBERON:0001714 - EHDAA2:0000226 - EHDAA:920 + + + uberon UBERON:0005706 obsolete central nervous system cranial ganglion @@ -414034,9 +414156,9 @@ - EHDAA:4739 - RETIRED_EHDAA2:0000985 - UBERON:0001804 + + + uberon UBERON:0005714 obsolete lens vesicle capsule @@ -414584,7 +414706,7 @@ Obsoleted definition: In the developing vertebrate embryo, the somitomeres are loose masses of paraxial mesoderm derived cells that form along each side of the neural tube towards the end of the third gestational week. The approximately 50 pairs of somitomeres begin developing in the cranial (head) region, continuing in a caudal (tail) direction until the end of week four[WP]. - UBERON:0009617 + FMA:85523 Wikipedia:Somitomere uberon @@ -415125,9 +415247,9 @@ - EMAPA:29925 - EMAPA:29933 - UBERON:0001297 + + + uberon UBERON:0005741 obsolete adventitia of uterus @@ -420635,7 +420757,7 @@ - AAO:0010327 + uberon UBERON:0005889 obsolete zygote cortex @@ -420860,7 +420982,7 @@ OBSOLETE: A leg is a limb on which an animal walks and stands (GO:0035110). this class was originally introduced to support GO:0035110, but this has been obsoleted, because leg is a mechano-functional grouping - UBERON:0000026 + uberon leg UBERON:0005894 @@ -420931,8 +421053,8 @@ A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]. this class was originally introduced to account for the previously vague use of the term 'limb' in GO. - AEO:0000172 - ncithesaurus:Extremities + + uberon extremitaet extremities @@ -421483,7 +421605,7 @@ See urothelium. was merged with urothelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'. MP treats them differently - UBERON:0000365 + uberon UBERON:0005910 obsolete transitional epithelium @@ -428753,7 +428875,7 @@ - FMA:258174 + uberon UBERON:0006080 obsolete segment of white matter of spinal cord @@ -431118,8 +431240,8 @@ - BIRNLEX:2522 - FMA:75640 + + basis modioli cochleae uberon UBERON:0006105 @@ -432270,8 +432392,8 @@ - FMA:66581 - NLXANAT:20090301 + + uberon A8 UBERON:0006122 @@ -434140,7 +434262,7 @@ - MA:0002260 + uberon UBERON:0006202 Was obsoleted as it grouped a lip structure with an unknown MA vein, which be a genital vein @@ -438383,10 +438505,10 @@ - EHDAA:8701 - EMAPA:18422 - FMA:71904 - RETIRED_EHDAA2:0001492 + + + + uberon UBERON:0006281 was obsoleted as it had no definition and the name was unclear. May refer to part of inferior vena cava or pre-hepatic portal vein FMA:71904 @@ -439737,7 +439859,7 @@ https://github.com/obophenotype/uberon/issues/3157 - UBERON:0006309 + uberon UBERON:0006310 Obsoleted as it is redundant with 'venous vitelline plexus'. @@ -441172,8 +441294,8 @@ - XAO:0003003 - ZFA:0001093 + + uberon UBERON:0006336 obsolete unspecified @@ -460966,8 +461088,8 @@ - AAO:0000571 - FMA:37374 + + specialized connective tissue uberon UBERON:0006809 @@ -461826,8 +461948,8 @@ A tube that connects ovary to the uterus. to be ceded to ARTHRO - FBbt:00004911 - TADS:0000415 + + uberon UBERON:0006835 obsolete arthropod oviduct @@ -462005,6 +462127,7 @@ Branch of spinal nerve that innervates the hypaxial muscles. + ramus anterior ventral ramus FMA:5982 @@ -462016,6 +462139,7 @@ anterior branch of spinal nerve ramus anterior nervi spinalis UBERON:0006838 + ventral ramus of spinal nerve https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg @@ -462104,6 +462228,7 @@ Branch of spinal nerve that innervates the epaxial muscles. + dorsal ramus ramus posterior FMA:5983 @@ -462114,6 +462239,7 @@ uberon posterior branch of spinal nerve UBERON:0006839 + dorsal ramus of spinal nerve http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png @@ -462419,6 +462545,7 @@ The initial segment of a cranial nerve, leaving the central nervous system. recommend asserting under this class rather than relying on inference, as relations may change FMA:52609 + HBA:9299 SCTID:280161004 TAO:0002190 ZFA:0001663 @@ -462974,7 +463101,7 @@ - UBERON:0005751 + uberon UBERON:0006852 Manually merged with UBERON:0005751. UBERON:0005751 was formerly labeled as 'visceral layer of glomerular capsule'. https://github.com/obophenotype/uberon/issues/2230 @@ -467687,12 +467814,12 @@ A type of cell produced by division of the egg after fertilization. - CL:0000353 - BILA:0000052 - FMA:72551 - VHOG:0001221 - XAO:0003016 - ZFA:0000093 + + + + + + Wikipedia:Blastomere uberon UBERON:0007006 @@ -468070,8 +468197,8 @@ - BILA:0000132 - UBERON:0001135 + + uberon UBERON:0007094 obsolete as it was not clear whether the class was intended in the insect or vertebrate sense of the term. For vertebrates consider the term smooth muscle [https://github.com/obophenotype/insect_neuroanatomy_ontology/issues/8] @@ -474286,7 +474413,7 @@ - UBERON:0019250 + uberon UBERON:0007234 obsolete 4-8 cell stage @@ -481267,7 +481394,7 @@ OBSOLETE: A domain of columnar epithelium in an embryo that represents the early stage of the development of the epithelial component of a new anatomical structure. consider merging with ectodermal placode? In EHDAA2 this includes lens, nasal, otic epibranchial and trigeminal placodes - UBERON:0005085 + AEO_RETIRED:0000112 EHDAA2_RETIRED:0003112 uberon @@ -481671,8 +481798,8 @@ - AEO:0000173 - EHDAA2:0003173 + + uberon UBERON:0007540 obsoleted due to incorrect logical definition. A new class with the same name may be created in the future. @@ -494759,7 +494886,7 @@ A cnida that is harpoon-like in structure and is capable of penetrating prey. - BTO:0000918 + penetrant cnida uberon UBERON:0008278 @@ -505256,6 +505383,7 @@ A branch of that maxillary nerve that innervates the mucous membrane of the hard palate. + BAMS:npal FMA:52797 Wikipedia:Nasopalatine_nerve @@ -505266,6 +505394,7 @@ nasopalatine nerves nervus nasopalatinus UBERON:0008810 + nasopalatine nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png @@ -510828,7 +510957,7 @@ - UBERON:0010377 + uberon UBERON:0008919 obsolete mesenchyme from somatopleure @@ -510840,7 +510969,7 @@ - UBERON:0010378 + uberon UBERON:0008920 obsolete mesenchyme from splanchnopleure @@ -513515,8 +513644,8 @@ The olfactory region of the brain, located in the cerebrum. - BTO:0002785 - SCTID:361576004 + + uberon olfactory brain UBERON:0008981 @@ -514415,6 +514544,7 @@ A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius). + BTO:0004978 FMA:53488 SCTID:50624003 @@ -514427,6 +514557,7 @@ sinus nerve of Hering uberon UBERON:0009009 + carotid sinus nerve @@ -516730,7 +516861,7 @@ - UBERON:0009097 + uberon UBERON:0009096 Obsoleted as the gravid stage is not a life cycle stage. A similar term may be recreated when we have stages specific to structures such as the uterus @@ -517711,12 +517842,14 @@ Cranial ganglion which develops from an epibranchial placode. + BTO:0006250 TAO:0001555 ZFA:0001555 epibranchial ganglia uberon UBERON:0009127 + Epibranchial ganglia orchestrate the development of the cranial neurogenic crest epibranchial ganglion @@ -517955,8 +518088,8 @@ - EHDAA2:0001103 - SCTID:361481005 + + uberon UBERON:0009131 Obsoleted as the meaning of the class was unclear in earlier versions of EHDAA2 @@ -518332,7 +518465,7 @@ - UBERON:0001043 + oesophageal region oesophageal region uberon @@ -521823,7 +521956,7 @@ The bottommost bone in the equine leg and is encased by the hoof capsule. The distal phalanx articulates with both the middle phalanx and the distal sesamoid, forming the distal interphalangeal joint. - UBERON:0014485 + uberon UBERON:0009554 Was made obsolete in favor of the more generic grouping @@ -521921,7 +522054,7 @@ - UBERON:0009768 + uberon UBERON:0009557 obsolete coffin joint @@ -524650,6 +524783,7 @@ The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule. + ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS) BTO:0000883 DHBA:146035120 @@ -524664,6 +524798,7 @@ spinal root uberon UBERON:0009623 + spinal nerve root https://github.com/obophenotype/uberon/issues/2644 @@ -524734,6 +524869,7 @@ The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions. + FMA:5861 NCIT:C33015 SCTID:361600002 @@ -524745,6 +524881,7 @@ uberon nervi lumbales UBERON:0009624 + lumbar nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png @@ -524806,6 +524943,7 @@ The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus. + FMA:5862 NCIT:C33505 SCTID:361601003 @@ -524817,6 +524955,7 @@ uberon nervi sacrales UBERON:0009625 + sacral nerve http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png @@ -526301,7 +526440,7 @@ - MA:0001960 + uberon UBERON:0009656 insufficiently defined @@ -526435,7 +526574,7 @@ - UBERON:0001146 + uberon UBERON:0009660 obsolete adrenal vein @@ -526986,6 +527125,7 @@ The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves. + EHDAA2:0000490 EHDAA:3719 EMAPA:18217 @@ -527005,6 +527145,7 @@ nervus corda tympani tympanic cord UBERON:0009675 + chorda tympani branch of facial nerve @@ -528725,7 +528866,7 @@ - XAO:1000007 + uberon UBERON:0009741 Was made obsolete as it was xenopus specific @@ -546953,7 +547094,7 @@ Embryoid bodies are structures resembling embryos, occurring in several types of germ cell tumors. - BTO:0001718 + Wikipedia:Embryoid_body uberon UBERON:0010263 @@ -547788,7 +547929,7 @@ - UBERON:0001896 + uberon UBERON:0010288 obsolete future medulla oblongata @@ -549094,8 +549235,8 @@ - UBERON:0000923 - UBERON:0010313 + + uberon UBERON:0010317 Grouping term for query purposes @@ -549235,7 +549376,7 @@ - UBERON:0001456 + VSAO:0000083 uberon UBERON:0010324 @@ -549249,7 +549390,7 @@ Cranial skeleton derived from neural crest cells. - UBERON:0011156 + VSAO:0000082 Cranio-facial skeleton uberon @@ -554572,9 +554713,9 @@ - NCIT:C12319 - UBERON:0006588 - UBERON:0006589 + + + uberon UBERON:0010504 obsolete round ligament @@ -565097,9 +565238,9 @@ A hair-like unicellular external process of the body wall or any derivative of the latter; a hair; a bristle. - BTO:0004212 - INSECT:0000114 - MIAA:0000152 + + + uberon bristle chaeta @@ -571565,6 +571706,7 @@ The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve. + FMA:52628 NCIT:C32908 SCTID:280218007 @@ -571572,6 +571714,7 @@ nervus lacrimalis uberon UBERON:0011096 + lacrimal nerve @@ -576433,6 +576576,7 @@ An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus. + EMAPA:37704 FMA:312377 MA:0002185 @@ -576444,6 +576588,7 @@ plexus ophthalmicus uberon UBERON:0011194 + ophthalmic plexus @@ -577442,6 +577587,7 @@ DHBA:12888 DMBA:17748 FMA:6213 + HBA:9337 ZFA:0007011 rootlet of vagus nerve vagal root @@ -578974,7 +579120,7 @@ https://github.com/obophenotype/uberon/issues/3159 - UBERON:0004760 + uberon UBERON:0011253 Obsoleted as it seems to refer to the same concept as 'gland of anal canal'. @@ -582264,6 +582410,7 @@ The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice. + BAMS:sln FMA:6239 SCTID:279928006 @@ -582274,6 +582421,7 @@ superior laryngeal branch of vagus uberon UBERON:0011326 + superior laryngeal nerve @@ -586239,8 +586387,8 @@ - GO:0005578 - VSAO:0000021 + + uberon UBERON:0011586 obsoleted as it was already present in GO @@ -589940,7 +590088,7 @@ - UBERON:0011671 + uberon UBERON:0011668 obsolete nuchal plate of carapace @@ -591697,7 +591845,7 @@ Anatomical structure that is part of the larva. - AAO:0000265 + uberon UBERON:0011771 Obsolete term in XAO - XAO:0003058 @@ -596669,6 +596817,7 @@ Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs. + FMA:5924 MESH:D001338 NCIT:C12648 @@ -596678,6 +596827,7 @@ uberon postganglionic autonomic fibre UBERON:0011924 + postganglionic autonomic fiber @@ -596740,6 +596890,7 @@ Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released. + FMA:5923 MESH:D001339 NCIT:C12624 @@ -596748,6 +596899,7 @@ uberon preganglionic autonomic fibre UBERON:0011925 + preganglionic autonomic fiber @@ -596798,6 +596950,7 @@ A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ. + MESH:D017779 NCIT:C12650 SCTID:323617002 @@ -596807,6 +596960,7 @@ postganglionic sympathetic fiber sympathetic postganglionic fiber UBERON:0011926 + postganglionic sympathetic fiber @@ -596921,6 +597075,7 @@ A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ. + MESH:D017777 NCIT:C12649 UMLS:C0206252 @@ -596928,6 +597083,7 @@ uberon parasympathetic postganglionic fiber UBERON:0011929 + postganglionic parasympathetic fiber @@ -603631,8 +603787,8 @@ - UBERON:0001926 - UBERON:0001927 + + EFO:0002463 SCTID:362376002 geniculate body @@ -603910,8 +604066,8 @@ https://sourceforge.net/tracker/?func=detail&aid=3580301&group_id=76834&atid=1205376 - MA:0001284 - NCIT:C33823 + + uberon UBERON:0012184 obsolete term deriving from MA to NCITA mappings. @@ -605901,7 +606057,7 @@ - UBERON:0013583 + uberon UBERON:0012263 obsolete equine cannon bone @@ -605913,7 +606069,7 @@ - UBERON:0003647 + uberon UBERON:0012264 obsolete equine forelimb cannon bone @@ -605925,7 +606081,7 @@ - UBERON:0003652 + uberon UBERON:0012265 obsolete equine hindlimb cannon bone @@ -639206,9 +639362,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Missing definition for term UBERON:0014457. Please replace it using linked reference. - FBbt:10005249 - UBERON:0003071 - XAO:0000227 + + + EFO:0000240 adult eye primordium early uberon @@ -645639,6 +645795,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( BIRNLEX:1580 DHBA:12883 DMBA:17749 + HBA:9340 SCTID:280187004 Wikipedia:Cranial_root_of_accessory_nerves neuronames:703 @@ -656241,7 +656398,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0004040 + uberon UBERON:0014934 obsolete cerebral cortex mantle layer @@ -657343,7 +657500,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0004637 + uberon UBERON:0015020 obsolete otic capsule endochondral element @@ -668428,7 +668585,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0002275 + uberon UBERON:0015827 obsolete brainstem reticular formation @@ -670516,7 +670673,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The term tonsillar node can be inaccurate or ambiguous. - SCTID:261419004 + tonsillar node uberon UBERON:0015919 @@ -671729,8 +671886,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0036013 - UBERON:0036014 + + uberon UBERON:0016411 obsolete intergluteal cleft @@ -672102,6 +672259,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence. + does not pass through the carpal tunnel FMA:44836 Wikipedia:Palmar_branch_of_the_median_nerve @@ -672112,6 +672270,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( ramus palmaris nervus interossei antebrachii anterior uberon UBERON:0016430 + palmar branch of median nerve @@ -674297,6 +674456,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + EMAPA:31527 FMA:80131 SCTID:324760006 @@ -674304,6 +674464,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon pelvic ganglia UBERON:0016508 + pelvic ganglion @@ -676454,7 +676615,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0002181 + uberon UBERON:0016573 obsolete lamina II of gray matter of spinal cord @@ -677060,7 +677221,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - FMA:68872 + uberon UBERON:0016593 Rexed lamina system typically extends to X @@ -677073,7 +677234,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - FMA:68873 + uberon UBERON:0016594 Rexed lamina system typically extends to X @@ -678497,7 +678658,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A cell group located ventral to the brachium conjunctivum in the general area where the medial and lateral parabrachial nuclei abut, shifting to the slightly more lateral position rostrally. - UBERON:0002869 + uberon UBERON:0016849 obsolete subparabrachial nucleus @@ -682903,6 +683064,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Branch of spinal nerve that innervates the structures of the vertebral column. + FMA:5988 SCTID:308794007 Wikipedia:Meningeal_branches_of_spinal_nerve @@ -682912,6 +683074,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon sinuvertebral nerve UBERON:0017641 + meningeal branch of spinal nerve @@ -682969,6 +683132,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans. + rami communicantes FMA:5874 SCTID:310727003 @@ -682976,6 +683140,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( uberon rami communicantes of spinal nerve UBERON:0017642 + communicating branch of spinal nerve @@ -688187,7 +688352,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0016929 + uberon UBERON:0018280 obsolete lingual cusp of tooth @@ -688970,7 +689135,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( OBSOLETE expanded and swollen region of a surface that is otherwise relatively flat - UBERON:0010188 + uberon UBERON:0018306 @@ -689087,7 +689252,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Rib attached to the cervical vertebrae. - UBERON:0018144 + uberon UBERON:0018311 obsolete cervical rib @@ -689544,7 +689709,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0017249 + uberon UBERON:0018327 obsolete incisive process of premaxilla @@ -690486,7 +690651,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Opening for the supracoracoid nerve in the supracoracoid. - UBERON:3000778 + uberon UBERON:0018363 obsolete supracoracoid nerve foramen @@ -691043,7 +691208,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( OBSOLETE Any of a class (Cestoda) of bilaterally symmetrical flatworms parasitic especially in the intestines of vertebrates. - NCBITaxon:6199 + uberon tapeworm UBERON:0018387 @@ -691946,6 +692111,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland. + FMA classifies as an anatomical junction FMA:67584 SCTID:280273005 @@ -691957,6 +692123,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nerve of the pterygoid canal vidian nerve UBERON:0018412 + vidian nerve @@ -692417,8 +692584,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - FMA:77455 - SCTID:369268003 + + formatio reticularis spinalis reticular formation of spinal cord spinal reticular formation @@ -695684,7 +695851,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:4200172 + uberon UBERON:0018669 obsolete neck of humerus @@ -695793,6 +695960,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut. + EHDAA2:0001432 EHDAA:5628 FMA:16901 @@ -695806,6 +695974,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nn erigentes pelvic splanchnic nerve UBERON:0018675 + pelvic splanchnic nerve @@ -695926,10 +696095,12 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers. + FMA:6280 Wikipedia:Thoracic_splanchnic_nerves uberon UBERON:0018679 + thoracic splanchnic nerve @@ -695955,11 +696126,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + FMA:6281 SCTID:280503007 greater thoracic splanchnic nerve uberon UBERON:0018680 + The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. greater splanchnic nerve @@ -695982,11 +696155,13 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + FMA:6282 SCTID:280505000 lesser thoracic splanchnic nerve uberon UBERON:0018681 + The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. lesser splanchnic nerve @@ -696010,12 +696185,14 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut. + FMA:6287 SCTID:280507008 Wikipedia:Lumbar_splanchnic_nerves uberon lumbar splanchnic nerve UBERON:0018683 + lumbar splanchnic nerve @@ -699102,6 +699279,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( BIRNLEX:1533 DHBA:12887 DMBA:17747 + HBA:9334 glossopharyngeal nerve root uberon UBERON:0019310 @@ -702451,6 +702629,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva. + BTO:0001452 FMA:52668 NCIT:C33159 @@ -702462,6 +702641,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nasociliary nerve nervus nasociliaris UBERON:0022300 + nasociliary nerve @@ -702565,6 +702745,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea. + FMA:52691 SCTID:280228003 Wikipedia:Long_ciliary_nerves @@ -702572,6 +702753,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( long ciliary nerve nervi ciliares longi UBERON:0022301 + long ciliary nerve @@ -702646,6 +702828,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball. + Contains preganglionic parasympathetic axons. FMA:7041 SCTID:417598000 @@ -702656,6 +702839,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( nervi ciliares brevis short ciliary nerve UBERON:0022302 + short ciliary nerve @@ -705229,9 +705413,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1616 - UMLS:C0694579 - neuronames:46 + + + FS simian fossa uberon @@ -705491,7 +705675,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1003 + predominantly gray regional part of pretectal region uberon UBERON:0022480 @@ -705511,7 +705695,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1039 + uberon UBERON:0022515 obsolete regional part of organ cavity @@ -705561,7 +705745,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1068 + regional part of solitary nucleus uberon UBERON:0022543 @@ -705591,7 +705775,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1094 + regional part of a lobe of the cerebellum uberon UBERON:0022569 @@ -705611,7 +705795,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:11 + uberon UBERON:0022575 obsolete regional part of body system @@ -705623,7 +705807,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1122 + regional part of peripheral nervous system uberon UBERON:0022598 @@ -705643,7 +705827,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1145 + uberon UBERON:0022620 obsolete regional part of eye @@ -705655,7 +705839,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1174 + predominantly gray regional part of epithalamus uberon UBERON:0022647 @@ -705729,7 +705913,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1177 + regional part of parietal lobe uberon UBERON:0022650 @@ -705749,7 +705933,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1181 + regional part of ear uberon UBERON:0022654 @@ -705769,7 +705953,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1188 + regional part of occipital lobe uberon UBERON:0022660 @@ -705789,7 +705973,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1193 + predominantly gray regional part of lateral hypothalamic region uberon UBERON:0022665 @@ -705809,7 +705993,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1209 + regional part of cerebral peduncle uberon UBERON:0022681 @@ -705868,7 +706052,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1229 + predominantly gray regional part of posterior hypothalamic region uberon UBERON:0022701 @@ -705964,7 +706148,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1260 + superficial feature part of midbrain tectum uberon UBERON:0022732 @@ -705984,7 +706168,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1268 + superficial feature part of pons uberon UBERON:0022740 @@ -706004,7 +706188,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1269 + regional part of central nervous system uberon UBERON:0022741 @@ -706024,7 +706208,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1284 + regional part of sacral spinal cord uberon UBERON:0022756 @@ -706054,7 +706238,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1289 + superficial feature part of intermediate hypothalamic region uberon UBERON:0022761 @@ -706100,7 +706284,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1306 + regional part of medial mammillary nucleus uberon UBERON:0022778 @@ -706162,7 +706346,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1351 + superficial feature part of diencephalon uberon UBERON:0022822 @@ -706182,7 +706366,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1357 + predominantly gray regional part of medullary raphe nuclear complex uberon UBERON:0022828 @@ -706212,7 +706396,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1405 + regional part of oculomotor nuclear complex uberon UBERON:0022877 @@ -706232,7 +706416,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1418 + regional part of red nucleus uberon UBERON:0022890 @@ -706252,7 +706436,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1423 + regional part of habenula uberon UBERON:0022895 @@ -706272,7 +706456,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1465 + predominantly gray regional part of midbrain tegmentum uberon UBERON:0022937 @@ -706379,7 +706563,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1472 + predominantly white regional part of midbrain tegmentum uberon UBERON:0022944 @@ -706399,7 +706583,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1485 + regional part of midbrain reticular formation uberon UBERON:0022957 @@ -706419,7 +706603,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1505 + regional part of cervical spinal cord uberon UBERON:0022976 @@ -706439,7 +706623,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1517 + regional part of thalamus uberon UBERON:0022988 @@ -706459,7 +706643,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1526 + superficial feature part of medulla oblongata uberon UBERON:0022997 @@ -706479,7 +706663,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1536 + predominantly white regional part of posterior hypothalamic region uberon UBERON:0023007 @@ -706499,7 +706683,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1542 + superficial feature part of posterior hypothalamic region uberon UBERON:0023013 @@ -706519,7 +706703,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1549 + predominantly white regional part of septum pellucidum uberon UBERON:0023020 @@ -706539,7 +706723,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1573 + regional part of cerebral white matter uberon UBERON:0023044 @@ -706559,7 +706743,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1576 + regional part of hypophysis uberon UBERON:0023047 @@ -706579,7 +706763,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1602 + regional part of lumbar spinal cord uberon UBERON:0023074 @@ -706599,7 +706783,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1620 + predominantly white regional part of epithalamus uberon UBERON:0023092 @@ -706666,7 +706850,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1625 + regional part of temporal lobe uberon UBERON:0023097 @@ -706686,7 +706870,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1630 + predominantly gray regional part of intermediate hypothalamic region uberon UBERON:0023102 @@ -706706,7 +706890,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1656 + predominantly gray regional part of hypothalamus uberon UBERON:0023127 @@ -706736,7 +706920,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1693 + regional part of septum uberon UBERON:0023163 @@ -706782,7 +706966,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2546 + cytoarchitectural part of cerebral cortex uberon UBERON:0023294 @@ -706802,7 +706986,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2570 + regional part of ventral cochlear nucleus uberon UBERON:0023317 @@ -706822,7 +707006,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2633 + predominantly gray part of medulla oblongata uberon UBERON:0023362 @@ -706956,7 +707140,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2671 + regional part of spinal cord dorsal horn uberon UBERON:0023399 @@ -706976,7 +707160,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2675 + regional part of spinal cord gray commissure uberon UBERON:0023401 @@ -706996,7 +707180,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2678 + regional part of amygdala uberon UBERON:0023404 @@ -707128,7 +707312,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4098 + regional part of tongue uberon UBERON:0023536 @@ -707176,7 +707360,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4109 + regional part of stratum pyramidale hippocampi uberon UBERON:0023547 @@ -707196,7 +707380,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4114 + regional part of stratum oriens uberon UBERON:0023552 @@ -707216,7 +707400,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4118 + regional part of stratum radiatum uberon UBERON:0023556 @@ -707236,7 +707420,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4122 + regional part of stratum lacunosum moleculare uberon UBERON:0023560 @@ -707276,7 +707460,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:702 + regional part of basal nuclear complex uberon UBERON:0023572 @@ -707296,7 +707480,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:718 + predominantly gray regional part of inferior colliculus uberon UBERON:0023587 @@ -707356,7 +707540,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:761 + regional part of anterior hypothalamic region uberon UBERON:0023628 @@ -707376,7 +707560,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:771 + regional part of pons uberon UBERON:0023636 @@ -707396,7 +707580,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:784 + regional part of granular layer of cerebellar cortex uberon UBERON:0023648 @@ -707416,7 +707600,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:785 + predominantly white regional part of hypothalamus uberon UBERON:0023649 @@ -707436,7 +707620,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:808 + predominantly white regional part of tectum uberon UBERON:0023670 @@ -707456,7 +707640,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:815 + predominantly gray regional part of tectum uberon UBERON:0023677 @@ -707476,7 +707660,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:825 + regional part of septal nuclear complex uberon UBERON:0023687 @@ -707496,7 +707680,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:833 + superficial feature part of telencephalon uberon UBERON:0023695 @@ -707516,7 +707700,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:842 + regional part of fornix uberon UBERON:0023703 @@ -707656,7 +707840,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:940 + gross anatomical part of cerebral cortex uberon UBERON:0023783 @@ -707718,7 +707902,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:947 + regional part of limbic lobe uberon UBERON:0023789 @@ -707738,7 +707922,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:949 + regional part of hindbrain uberon UBERON:0023791 @@ -707758,7 +707942,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:972 + regional part of thoracic spinal cord uberon UBERON:0023812 @@ -707778,7 +707962,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:984 + regional part of frontal lobe uberon UBERON:0023824 @@ -707798,7 +707982,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:985 + predominantly white regional part of inferior colliculus uberon UBERON:0023825 @@ -707818,7 +708002,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:987 + cytoarchitectural part of the cerebellum uberon UBERON:0023827 @@ -708190,8 +708374,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Part of body that takes the form of a thin sheet of cells or fibrous material, e.g., the meningeal coverings of the brain[NIFSTD]. - NLXANAT:090201 - UBERON:0000158 + + body membrane uberon UBERON:0023869 @@ -708326,7 +708510,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:100305 + regional part of nose uberon UBERON:0023915 @@ -708545,7 +708729,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The telencephalon of the primate. - NLXANAT:1005012 + telencephalon of primate uberon primate telencephalon @@ -708617,8 +708801,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The telencephalon of a rodent. - NLXANAT:1005015 - UBERON:0001893 + + telencephalon of rodent uberon rodent telencephalon @@ -708653,8 +708837,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The brain of a rodent. - NLXANAT:1005016 - UBERON:0000955 + + brain of rodent uberon rodent brain @@ -708688,8 +708872,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1005019 - UBERON:0009951 + + olfactory bulb main of rodent uberon UBERON:0023942 @@ -709316,7 +709500,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090206 + regional part of spinal nerve uberon UBERON:0024065 @@ -709336,7 +709520,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090305 + regional part of nucleus accumbens uberon UBERON:0024073 @@ -709425,7 +709609,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090401 + regional part of stratum lucidum uberon UBERON:0024081 @@ -709444,7 +709628,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090406 + cytoarchitectural part of dorsal tegmental nucleus uberon UBERON:0024086 @@ -709528,7 +709712,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1004 + regional part of adenohypophysis uberon UBERON:0024125 @@ -709584,7 +709768,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1041 + regional part of pontine tegmentum uberon UBERON:0024161 @@ -709604,7 +709788,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1053 + regional part of inner ear uberon UBERON:0024173 @@ -709624,7 +709808,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1058 + regional part orbital frontal cortex uberon UBERON:0024177 @@ -709644,7 +709828,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1063 + superficial feature part of cerebral cortex uberon UBERON:0024182 @@ -709772,7 +709956,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1092 + predominantly white regional part of cerebellar cortex uberon UBERON:0024211 @@ -709792,8 +709976,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1093 - UBERON:0001870 + + predominantly gray regional part of frontal lobe uberon UBERON:0024212 @@ -709812,7 +709996,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1114 + regional part of deep cerebellar nuclear complex uberon UBERON:0024234 @@ -709832,7 +710016,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1134 + regional part of autonomic nervous system uberon UBERON:0024254 @@ -709852,7 +710036,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1168 + regional part of basal part of pons uberon UBERON:0024285 @@ -709872,8 +710056,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1198 - UBERON:0016530 + + predominantly gray regional part of parietal lobe uberon UBERON:0024314 @@ -709892,7 +710076,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1210 + predominantly gray regional part of anterior hypothalamic region uberon UBERON:0024326 @@ -709912,7 +710096,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1213 + predominantly white regional part of cerebral peduncle uberon UBERON:0024329 @@ -709932,7 +710116,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1219 + predominantly white regional part of anterior hypothalamic region uberon UBERON:0024335 @@ -709952,7 +710136,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1231 + regional part of orbital gyri complex uberon UBERON:0024347 @@ -709972,7 +710156,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1265 + regional part of transverse frontopolar gyri complex uberon UBERON:0024381 @@ -710032,7 +710216,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1278 + regional part of parahippocampal gyrus uberon UBERON:0024394 @@ -710052,7 +710236,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1281 + regional part of tuberomammillary nucleus uberon UBERON:0024397 @@ -710072,7 +710256,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1322 + predominantly gray regional part of medial mammillary nucleus uberon UBERON:0024437 @@ -710092,7 +710276,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1324 + superficial feature part of frontal lobe uberon UBERON:0024439 @@ -710112,8 +710296,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1334 - UBERON:0002245 + + hemispheric parts of the cerebellar cortex uberon UBERON:0024449 @@ -710132,7 +710316,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1364 + regional part of inferior parietal cortex uberon UBERON:0024479 @@ -710152,8 +710336,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1386 - UBERON:0016540 + + predominantly gray regional part of occipital lobe uberon UBERON:0024501 @@ -710172,7 +710356,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1402 + regional part of neuraxis cavity uberon UBERON:0024518 @@ -710192,7 +710376,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1408 + predominantly gray regional part of midbrain reticular formation uberon UBERON:0024524 @@ -710212,7 +710396,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1412 + predominantly gray regional part of oculomotor nuclear complex uberon UBERON:0024528 @@ -710232,7 +710416,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1425 + predominantly gray regional part of red nucleus uberon UBERON:0024541 @@ -710252,7 +710436,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1434 + predominantly white regional part of red nucleus uberon UBERON:0024550 @@ -710272,7 +710456,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1443 + predominantly gray regional part of habenula uberon UBERON:0024559 @@ -710292,7 +710476,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1506 + regional part of sacral spinal cord white matter uberon UBERON:0024621 @@ -710312,7 +710496,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1507 + predominantly gray regional part of basal nuclear complex uberon UBERON:0024622 @@ -710332,7 +710516,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1538 + superficial feature part of temporal lobe uberon UBERON:0024653 @@ -710352,7 +710536,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1593 + superficial feature part of hypophysis uberon UBERON:0024708 @@ -710372,7 +710556,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1599 + regional part of cingulate gyrus uberon UBERON:0024714 @@ -710392,7 +710576,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1605 + regional part of outer ear uberon UBERON:0024721 @@ -710412,8 +710596,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1633 - UBERON:0016538 + + predominantly gray regional part of temporal lobe uberon UBERON:0024749 @@ -710433,7 +710617,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1647 + regional part of lumbar spinal cord white matter uberon UBERON:0024762 @@ -710453,7 +710637,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1679 + predominantly gray regional part of thalamus uberon UBERON:0024793 @@ -710473,7 +710657,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1686 + predominantly white regional part of thalamus uberon UBERON:0024800 @@ -710493,7 +710677,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1713 + regional part of middle ear uberon UBERON:0024826 @@ -710513,7 +710697,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1715 + regional part of preoptic area uberon UBERON:0024828 @@ -710607,7 +710791,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1793 + regional part of retina uberon UBERON:0024904 @@ -710627,8 +710811,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1796 - UBERON:0001869 + + hemisphere parts of cerebral cortex uberon cerebral hemisphere @@ -710722,8 +710906,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2554 - UMLS:C0458763 + + regional part of cochlear canal uberon division of cochlear canal @@ -710750,8 +710934,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2560 - UBERON:0001855 + + duct part of cochlear canal uberon UBERON:0024952 @@ -710770,7 +710954,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2571 + predominantly gray part of ventral cochlear nucleus uberon UBERON:0024962 @@ -710790,7 +710974,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2660 + predominantly gray part of solitary nucleus uberon UBERON:0025033 @@ -710810,7 +710994,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2697 + regional part of corticomedial nuclear complex uberon UBERON:0025067 @@ -710830,7 +711014,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2708 + regional part of olfactory cortex uberon UBERON:0025078 @@ -711008,7 +711192,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4034 + superficial feature part of parietal cortex uberon UBERON:0025116 @@ -711028,7 +711212,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4046 + regional part of longitudinal fissure uberon UBERON:0025128 @@ -711048,7 +711232,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4065 + cytoarchitectural part of occipital lobe uberon UBERON:0025147 @@ -711068,7 +711252,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4066 + cytoarchitectural part of frontal lobe uberon UBERON:0025148 @@ -711088,8 +711272,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4100 - http://uri.neuinfo.org/nif/nifstd/nifext_13 + + UBERON:0025487 regional part of gustatory epithelium uberon @@ -711110,7 +711294,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:723 + regional part of cervical spinal cord white matter uberon UBERON:0025236 @@ -711130,7 +711314,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:738 + predominantly white regional part of fornix uberon UBERON:0025250 @@ -711150,7 +711334,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:742 + regional part of anterior commissure uberon UBERON:0025254 @@ -711207,7 +711391,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:757 + regional part of hippocampal formation uberon UBERON:0025268 @@ -711227,7 +711411,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:775 + regional part of substantia nigra uberon UBERON:0025284 @@ -711247,7 +711431,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:821 + regional part of inferior frontal gyrus uberon UBERON:0025327 @@ -711267,8 +711451,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:831 - UBERON:0016542 + + predominantly gray regional part of limbic lobe uberon UBERON:0025337 @@ -711287,7 +711471,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:832 + predominantly gray regional part of septal nuclear complex uberon UBERON:0025338 @@ -711307,7 +711491,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:921 + regional part of neurohypophysis uberon UBERON:0025409 @@ -711327,7 +711511,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:930 + regional part of cingulate cortex uberon UBERON:0025418 @@ -711347,7 +711531,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:959 + regional part of cerebellar white matter uberon UBERON:0025444 @@ -711367,7 +711551,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:989 + regional part of thoracic spinal cord gray matter uberon UBERON:0025473 @@ -711891,7 +712075,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Part of brain and spinal cord excluding retina. - NLXANAT:1010010 + part of neuraxis uberon UBERON:0025619 @@ -711990,7 +712174,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090510 + regional part of dorsal cochlear nucleus uberon UBERON:0025744 @@ -712036,7 +712220,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1013 + predominantly gray regional part of adenohypophysis uberon UBERON:0025764 @@ -712112,7 +712296,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1027 + predominantly white regional part of basal part of pons uberon UBERON:0025778 @@ -712132,7 +712316,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1061 + predominantly gray regional part of pontine tegmentum uberon UBERON:0025811 @@ -712162,7 +712346,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1077 + regional part of pontine reticular formation uberon UBERON:0025827 @@ -712182,7 +712366,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1078 + regional part of superior olivary complex uberon UBERON:0025828 @@ -712244,7 +712428,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1098 + regional part of anterior nucleus of hypothalamus uberon UBERON:0025848 @@ -712291,7 +712475,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1147 + regional part of dentate gyrus uberon UBERON:0025897 @@ -712311,7 +712495,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1149 + predominantly white regional part of hippocampal formation uberon UBERON:0025899 @@ -712366,7 +712550,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1179 + regional part of enteric nervous system uberon UBERON:0025927 @@ -712386,7 +712570,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1180 + predominantly gray regional part of basal part of pons uberon UBERON:0025928 @@ -712406,7 +712590,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1182 + regional part of dentate nucleus uberon UBERON:0025930 @@ -712426,7 +712610,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1186 + regional part of hippocampus proper uberon UBERON:0025934 @@ -712446,7 +712630,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1236 + predominantly gray regional part of orbital gyri complex uberon UBERON:0025983 @@ -712466,7 +712650,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1246 + predominantly gray medial regional part of thalamus uberon UBERON:0025993 @@ -712486,7 +712670,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1253 + regional part of cerebral ventricular cavity uberon ventricles of brain @@ -712513,7 +712697,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1254 + regional part of median eminence uberon UBERON:0026001 @@ -712566,7 +712750,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1273 + predominantly gray regional part of transverse frontopolar gyri complex uberon UBERON:0026020 @@ -712586,7 +712770,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1285 + predominantly gray regional part of parahippocampal gyrus uberon UBERON:0026032 @@ -712606,7 +712790,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1293 + predominantly gray dorsal regional part of thalamus uberon UBERON:0026040 @@ -712626,7 +712810,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1301 + predominantly white dorsal regional part of thalamus uberon UBERON:0026048 @@ -712646,7 +712830,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1317 + regional part of middle frontal gyrus uberon UBERON:0026063 @@ -712666,7 +712850,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1333 + regional part of paravsuprachiasmatic nucleus regional part of suprachiasmatic nucleus uberon @@ -712693,7 +712877,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1360 + superficial feature part of cerebral peduncle uberon UBERON:0026106 @@ -712713,7 +712897,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1367 + regional part of neostriatum uberon UBERON:0026113 @@ -712733,7 +712917,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1371 + predominantly gray regional part of inferior parietal cortex uberon UBERON:0026117 @@ -712775,7 +712959,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1406 + regional part of paraventricular nucleus of hypothalamus uberon UBERON:0026153 @@ -712841,7 +713025,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1524 + predominantly gray anterior regional part of thalamus uberon UBERON:0026270 @@ -712861,7 +713045,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1525 + regional part of cervical spinal cord gray matter uberon UBERON:0026271 @@ -712921,7 +713105,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1550 + predominantly gray regional part of cingulate gyrus uberon UBERON:0026296 @@ -712941,7 +713125,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1578 + regional part of transverse temporal cortex uberon UBERON:0026324 @@ -713096,7 +713280,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1701 + predominantly gray ventral regional part of thalamus uberon UBERON:0026445 @@ -713116,7 +713300,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1712 + predominantly gray posterior regional part of thalamus uberon UBERON:0026456 @@ -713136,8 +713320,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1794 - UMLS:C0931696 + + regional part of cochlea uberon UBERON:0026536 @@ -713258,7 +713442,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2541 + regional part of macula uberon UBERON:0026564 @@ -713391,8 +713575,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2565 - UMLS:C1186240 + + regional part of cochlear duct uberon division of cochlear canal @@ -713502,7 +713686,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2685 + regional part of basolateral nuclear complex uberon UBERON:0026686 @@ -713522,7 +713706,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2699 + predominantly gray part of corticomedial nuclear complex uberon UBERON:0026700 @@ -713576,7 +713760,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4007 + regional part of posterior superior frontal sulcus uberon UBERON:0026720 @@ -713798,7 +713982,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:4049 + regional part of calcarine sulcus uberon UBERON:0026762 @@ -713971,7 +714155,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:700 + predominantly gray regional part of preoptic area uberon UBERON:0026845 @@ -713991,7 +714175,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:782 + predominantly gray regional part of substantia nigra uberon UBERON:0026921 @@ -714011,7 +714195,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:829 + predominantly gray regional part of inferior frontal gyrus uberon UBERON:0026966 @@ -714031,7 +714215,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:839 + predominantly white regional part of anterior commissure uberon UBERON:0026975 @@ -714051,7 +714235,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:849 + predominantly gray midline regional part of thalamus uberon UBERON:0026982 @@ -714071,7 +714255,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:856 + regional part of superior temporal sulcus uberon UBERON:0026986 @@ -714091,7 +714275,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:885 + regional part of thoracic spinal cord white matter uberon UBERON:0027007 @@ -714111,7 +714295,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:933 + predominantly gray regional part of neurohypophysis uberon UBERON:0027052 @@ -714157,7 +714341,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:960 + regional part of anterior cingulate cortex uberon UBERON:0027076 @@ -714177,7 +714361,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:962 + predominantly gray intralaminal regional part of thalamus uberon UBERON:0027078 @@ -714197,7 +714381,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:979 + regional part of cerebellar peduncular complex uberon UBERON:0027094 @@ -714217,7 +714401,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:988 + predominantly gray lateral regional part of thalamus uberon UBERON:0027103 @@ -714359,7 +714543,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1005029 + cytoarchitectural part of retina uberon UBERON:0027227 @@ -714411,7 +714595,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1010003 + matrix part of body of caudate nucleus uberon UBERON:0027243 @@ -714554,7 +714738,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:1010007 + striosomal part of tail of caudate nucleus uberon UBERON:0027247 @@ -714683,7 +714867,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20081243 + regional parts of the interpositus nucleus uberon UBERON:0027314 @@ -714778,7 +714962,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090309 + regional part of supraoptic nucleus uberon UBERON:0027352 @@ -714876,7 +715060,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - NLXANAT:20090511 + cytoarchitectural part of dorsal cochlear nucleus uberon granule cell layer of dcn @@ -714909,7 +715093,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1034 + predominantly gray regional part of dentate nucleus uberon UBERON:0027417 @@ -714929,7 +715113,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1071 + predominantly gray regional part of pontine reticular formation uberon UBERON:0027453 @@ -714987,7 +715171,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1183 + predominantly gray regional part of dentate gyrus uberon UBERON:0027563 @@ -715007,7 +715191,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1205 + regional part of caudate nucleus uberon UBERON:0027584 @@ -715027,7 +715211,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1221 + predominantly gray regional part of neostriatum uberon UBERON:0027600 @@ -715047,7 +715231,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1224 + regional part of globus pallidus uberon UBERON:0027603 @@ -715067,7 +715251,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1225 + predominantly gray regional part of ventral nuclear group uberon UBERON:0027604 @@ -715087,7 +715271,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1252 + predominantly gray regional part of medial dorsal nucleus uberon UBERON:0027631 @@ -715107,7 +715291,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1270 + regional part of lateral ventricle uberon UBERON:0027649 @@ -715127,7 +715311,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1272 + predominantly gray regional part of median eminence uberon UBERON:0027651 @@ -715147,7 +715331,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1286 + predominantly gray regional part of metathalamus uberon UBERON:0027665 @@ -715167,7 +715351,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1308 + predominantly white dorsal regional part of metathalamus uberon UBERON:0027687 @@ -715241,7 +715425,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1350 + predominantly gray regional part of anterior nuclear group uberon UBERON:0027728 @@ -715261,7 +715445,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1370 + predominantly gray regional part of superior olivary complex uberon UBERON:0027748 @@ -715281,7 +715465,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1377 + predominantly white regional part of superior olivary complex uberon UBERON:0027755 @@ -715301,7 +715485,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1380 + regional part of paraventricular nucleus of hypothalamus magnocellular division uberon UBERON:0027758 @@ -715321,7 +715505,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1382 + regional part of superior olive uberon UBERON:0027760 @@ -715395,7 +715579,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1417 + regional part of thoracic spinal cord dorsal horn uberon UBERON:0027796 @@ -715415,7 +715599,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1435 + regional part of paraventricular nucleus of hypothalamus descending division uberon UBERON:0027814 @@ -715435,7 +715619,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1449 + predominantly gray regional part of hippocampal formation uberon UBERON:0027828 @@ -715455,7 +715639,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1495 + regional part of sacral spinal cord gray matter uberon UBERON:0027874 @@ -715475,7 +715659,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1631 + regional part of lumbar spinal cord gray matter uberon UBERON:0028010 @@ -715495,7 +715679,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1703 + regional part of cervical spinal cord dorsal horn uberon UBERON:0028079 @@ -715525,7 +715709,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2530 + regional part of spiral organ of corti uberon UBERON:0028192 @@ -715611,7 +715795,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2545 + regional part of fovea uberon UBERON:0028200 @@ -715631,7 +715815,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2550 + regional part of vestibular ganglion uberon UBERON:0028205 @@ -715651,7 +715835,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2681 + predominantly gray regional part of amygdala uberon UBERON:0028314 @@ -715671,7 +715855,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2684 + predominantly gray part of basolateral nuclear complex uberon UBERON:0028317 @@ -715691,7 +715875,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2693 + regional part of basal amygdaloid nucleus uberon UBERON:0028326 @@ -715711,7 +715895,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2704 + regional part of entorhinal cortex uberon UBERON:0028337 @@ -716745,7 +716929,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:772 + predominantly gray part of posterior nuclear complex uberon UBERON:0028544 @@ -716765,7 +716949,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:852 + predominantly gray part of intralaminar nuclear group uberon UBERON:0028615 @@ -716785,7 +716969,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:854 + predominantly gray regional part of midline nuclear group uberon UBERON:0028616 @@ -716871,7 +717055,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:978 + regional part of substantia nigra pars reticulata uberon UBERON:0028725 @@ -716891,7 +717075,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:997 + predominantly gray regional part of lateral nuclear group uberon UBERON:0028744 @@ -717309,7 +717493,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1124 + predominantly gray regional part of ventral lateral nucleus uberon UBERON:0029140 @@ -717329,7 +717513,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1203 + predominantly white dorsal regional part of medial geniculate body uberon UBERON:0029215 @@ -717349,7 +717533,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1385 + predominantly gray regional part of superior olive uberon UBERON:0029396 @@ -717369,7 +717553,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1403 + regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part uberon UBERON:0029415 @@ -717481,7 +717665,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1583 + predominantly gray regional part of lateral geniculate body uberon UBERON:0029594 @@ -717501,7 +717685,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1592 + predominantly gray regional part of medial geniculate body uberon UBERON:0029603 @@ -717561,7 +717745,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1617 + predominantly white regional part of globus pallidus uberon UBERON:0029629 @@ -717620,7 +717804,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1671 + predominantly gray regional part of ventral posterior nucleus uberon UBERON:0029681 @@ -717640,7 +717824,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2527 + regional part of basilar membrane uberon UBERON:0029822 @@ -717660,7 +717844,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2574 + regional part of trapezoid nuclear complex uberon UBERON:0029861 @@ -717680,7 +717864,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2688 + regional part of lateral amygdaloid nucleus uberon UBERON:0029954 @@ -717700,7 +717884,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:2694 + predominantly gray part of basal amygdaloid nucleus uberon UBERON:0029960 @@ -717720,7 +717904,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:709 + predominantly gray regional part of ventral anterior nucleus uberon UBERON:0030119 @@ -717740,7 +717924,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:841 + predominantly gray regional part of pulvinar uberon UBERON:0030242 @@ -717820,7 +718004,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:948 + predominantly gray part of rostral intralaminar nuclei uberon UBERON:0030330 @@ -717913,7 +718097,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1545 + predominantly gray regional part of globus pallidus uberon UBERON:0031196 @@ -717933,7 +718117,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:1664 + predominantly gray regional part of ventral posterolateral nucleus uberon UBERON:0031314 @@ -718016,7 +718200,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:924 + predominantly gray regional part of ventral posteromedial nucleus uberon UBERON:0031948 @@ -718178,7 +718362,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - BIRNLEX:791 + regional part of lumbar spinal cord dorsal horn uberon UBERON:0034667 @@ -720288,6 +720472,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa. + EMAPA:37957 FMA:5866 MESH:D017776 @@ -720297,6 +720482,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( visceral nerve uberon UBERON:0034728 + autonomic nerve @@ -729616,7 +729802,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( https://github.com/obophenotype/uberon/issues/3158 - UBERON:0005483 + uberon UBERON:0035075 Obsoleted as it is redundant with 'thymus lobe'. @@ -735224,11 +735410,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - GO:0045202 - FMA:67408 - NCIT:C13281 - SCTID:362298009 - UMLS:C0039062 + + + + + uberon UBERON:0035344 obsolete synapse @@ -738403,10 +738589,10 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( OBSOLETE: The fascia dentata is the earliest stage of the hippocampal circuit. Its primary input is the perforant path from the superficial layers of entorhinal cortex. Its principal neurons are tiny granule cells which give rise to unmyelinated axons called the mossy fibers which project to the hilus and CA3. The fascia dentata of the rat contains approximately 1,000,000 granule cells. It receives feedback connections from mossy cells in the hilus at distant levels in the septal and temporal directions. The fascia dentata and the hilus together make up the dentate gyrus. As with all regions of the hippocampus, the dentate gyrus also receives GABAergic and cholinergic input from the medial septum and the diagonal band of Broca. A quick perusal of definitions for fascia dentata suggests that it is sometimes used to refer to the entire dentate gyrus, in which case it should be a synonym, and sometimes to a specific cytoarchitectural field of dentate gyrus. More research is needed. In the meanwhile, I have not assigned it as a part of dentate gyrus, assigning instead the cytoarchitectural layers. (Maryann Martone) - UBERON:0001885 - BIRNLEX:1191 - BTO:0002615 - neuronames:180 + + + + UMLS:C0152314 uberon fascia dentata @@ -742071,6 +742257,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses. + FMA:6641 SCTID:362495005 Wikipedia:Inferior_mesenteric_plexus @@ -742079,6 +742266,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( plexus nervosus mesentericus inferior uberon UBERON:0035770 + inferior mesenteric nerve plexus @@ -742114,9 +742302,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + SCTID:314752009 uberon UBERON:0035771 + mesenteric plexus @@ -742126,9 +742316,11 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( + FMA:80133 uberon UBERON:0035772 + aortic plexus @@ -747362,9 +747554,9 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( Historically the term cerebrum has been used for several different parts of the CNS including the whole brain, the cerebral hemispheres and the sum of cerebral cortex and adjacent cerebral white matter. A thorough discussion of the definitional history is to be found in Anthoney-1994. - UBERON:0001869 - UBERON:0001893 - neuronames:2068 + + + uberon UBERON:0035955 obsolete cerebrum @@ -747562,8 +747754,8 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( 1: The trunk of an elephant; also: any long flexible snout. 2: Any of various elongated or extensible tubular processes as the sucking organ of a butterfly of the oral region of an invertebrate. - BTO:0001117 - UBERON:0014479 + + uberon UBERON:0035961 obsolete proboscis @@ -751142,6 +751334,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear. + FMA:53480 SCTID:280289008 Wikipedia:Tympanic_nerve @@ -751152,6 +751345,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( tympanic branch tympanic branch of the glossopharyngeal UBERON:0036216 + tympanic nerve @@ -759804,7 +759998,7 @@ According to Price (1990; pp. 979-998 in The Human Nervous System, G. Paxinos, ( - UBERON:0006656 + FMA:0329307 uberon UBERON:0039267 @@ -763000,7 +763194,7 @@ Seems out of scope for uberon and/or not very useful as a class. A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995. - CL:0000353 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000093 blastomeres @@ -763688,7 +763882,7 @@ Seems out of scope for uberon and/or not very useful as a class. Median fin skeleton that is located posterior to the anus. - UBERON:4000166 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000167 @@ -764257,8 +764451,8 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0008993 - ZFA:0000197 + + uberon UBERON:2000197 obsolete dorsal nucleus @@ -765920,7 +766114,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0001107 + ZFA:0000283 uberon UBERON:2000283 @@ -766404,8 +766598,8 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0008993 - ZFA:0000302 + + uberon UBERON:2000302 obsolete ventral nucleus @@ -767632,7 +767826,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0011778 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000387 @@ -768999,7 +769193,7 @@ Seems out of scope for uberon and/or not very useful as a class. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0011145 + uberon UBERON:2000463 false @@ -770366,7 +770560,7 @@ Seems out of scope for uberon and/or not very useful as a class. Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995. - ZFA:0000541 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000541 marginal blastomeres @@ -771295,7 +771489,7 @@ Seems out of scope for uberon and/or not very useful as a class. https://github.com/obophenotype/uberon/issues/3160 - UBERON:0011299 + uberon UBERON:2000597 Obsoleted as it is redundant with 'white matter of telencephalon'. @@ -771913,7 +772107,7 @@ no information about this class, may be zebrafish specific nomenclature. - UBERON:0002150 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0000624 brachium conjunctivium @@ -773129,7 +773323,7 @@ Not clear that directional labels for optic tract parts are consistent across ta - CL:0000853 + ZFA:0000688 support cells uberon @@ -775398,7 +775592,7 @@ Not clear that directional labels for optic tract parts are consistent across ta - CL:0005000 + ZFA:0000778 interneurons spinal cord uberon @@ -777338,7 +777532,7 @@ Not clear that directional labels for optic tract parts are consistent across ta Median fin skeleton supporting the caudal fin. - UBERON:4000167 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000862 @@ -779264,7 +779458,7 @@ Not clear that directional labels for optic tract parts are consistent across ta - UBERON:0003077 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2000942 @@ -782046,7 +782240,7 @@ Seems out of scope for uberon and/or not very useful as a class. The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001. - UBERON:4000164 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon nageoire caudale tail @@ -782264,7 +782458,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0003081 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001065 uberon @@ -782677,7 +782871,7 @@ Seems out of scope for uberon and/or not very useful as a class. This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001109 egg uberon @@ -782772,7 +782966,7 @@ Seems out of scope for uberon and/or not very useful as a class. Postcranial axial skeleton that is unpaired and located on the sagittal plane of the organism. - UBERON:4000170 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon axial fin skeleton unpaired fin skeleton @@ -782812,7 +783006,7 @@ Seems out of scope for uberon and/or not very useful as a class. Median fin skeleton located on the dorsal surface of the organism. - UBERON:4000168 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2001124 @@ -783543,7 +783737,7 @@ Seems out of scope for uberon and/or not very useful as a class. Median fin that is located posterior to the anus. - UBERON:4000163 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon nageoire anale proctoptère @@ -784373,7 +784567,7 @@ Seems out of scope for uberon and/or not very useful as a class. - UBERON:0001775 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001203 uberon @@ -785802,7 +785996,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - UBERON:0006284 + This class was obsoleted as it was discovered to be equivalent to an existing class ZFA:0001259 forebrain vesicle @@ -786786,7 +786980,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - CL:0000020 + ZFA:0009007 uberon UBERON:2001337 @@ -788253,7 +788447,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the dorsal fin. - UBERON:4000177 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon dorsal fin lepidotrichia dorsal fin ray @@ -788381,7 +788575,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the anal fin. - UBERON:4000176 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon anal fin lepidotrichia anal fin ray @@ -788793,7 +788987,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - UBERON:0015178 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001462 somite border cell @@ -789020,7 +789214,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. Kimmel et al, 1995. - ZFA:0001473 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001473 uberon @@ -789280,7 +789474,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. Kimmel et al, 1995. - ZFA:0001484 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0001484 uberon @@ -790470,7 +790664,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the caudal fin. - UBERON:4000174 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon caudal fin ray uberon @@ -790503,7 +790697,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium is composed of two hemitrichia that surround bundles of actinotrichia distally. - UBERON:4000175 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon pectoral fin lepidotrichia pectoral fin ray @@ -790546,7 +790740,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Lepidotrichium which is part of the pelvic fin. - UBERON:4000173 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon pelvic fin lepidotrichia pelvic fin ray @@ -790643,7 +790837,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials. - UBERON:4000172 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon fin ray uberon @@ -790771,7 +790965,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001565 uberon UBERON:2001565 @@ -790791,7 +790985,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001566 uberon UBERON:2001566 @@ -790811,7 +791005,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001567 uberon UBERON:2001567 @@ -790831,7 +791025,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001568 uberon UBERON:2001568 @@ -790851,7 +791045,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - CL:0000023 + ZFA:0001569 mature egg unactivated egg @@ -790884,7 +791078,7 @@ Synonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bo - CL:0000025 + ZFA:0001570 activated oocyte uberon @@ -801047,7 +801241,7 @@ urohyal ventral wing (Castro and Vari 2004). Endochondral element that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton. - UBERON:0004740 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2001914 @@ -802300,7 +802494,7 @@ urohyal ventral wing (Castro and Vari 2004). - UBERON:0002376 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2001953 @@ -802842,7 +803036,7 @@ urohyal ventral wing (Castro and Vari 2004). - ZFA:0005558 + uberon UBERON:2001967 Obsoleted as we redundant with other classes. See https://github.com/obophenotype/uberon/issues/462 @@ -805602,7 +805796,7 @@ urohyal ventral wing (Castro and Vari 2004). Chemical substance that functions as an alarm signal. - CHEBI:133299 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2002050 @@ -808303,7 +808497,7 @@ Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS O Anatomical structure that consists of a sheet of connective tissue attached to the vertebral column and dividing the epaxial and hypaxial musculature. - UBERON:0003901 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2002131 @@ -808613,7 +808807,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Compound endochdondral and dermal bone that results from the fusion of the dermal dermopalatine and the endochondral autopalatine and forms the antero-lateral region of the palate. Commonly, it articulates with the maxilla antero-laterally and with the ethmoidal region medially. The palatine is paired. - UBERON:0001682 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2002158 @@ -809300,7 +809494,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Muscle which is part of the head. - UBERON:0002376 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon cephalic muscle uberon @@ -809581,7 +809775,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye. - UBERON:0001783 + ZFA:0001625 optic nerve heads uberon @@ -810276,7 +810470,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0008248 + pyloric appendage uberon UBERON:2002253 @@ -810778,7 +810972,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Fin that is an unpaired fin located in the sagittal plane of the organism. - VSAO:0000162 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon nageoire impaire périssoptérygie @@ -811088,7 +811282,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Clear ocular fluid in the anterior segment of the eye. It is produced primarily by dorsal ciliary epithelial cells. - UBERON:0001796 + ZFA:0005564 uberon UBERON:2002288 @@ -811108,7 +811302,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Multi-tissue structure that composes the opaque fibrous outer layer of the eye. - UBERON:0001773 + uberon UBERON:2002289 obsolete sclera @@ -811127,7 +811321,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Portion of organism substance that is a gelatinous extracellular matrix structure that fills the vitreous cavity of the eye. - UBERON:0001797 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0005561 uberon @@ -813953,7 +814147,7 @@ Albert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical e Skeletal tissue that is hypermineralized and aprismatic and deposited by a combination of ameloblasts and odontoblasts that are excluded from the matrix. Enameloid develops from pre-enameloid tissue. - UBERON:0011692 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:2005142 @@ -815899,7 +816093,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons. - CL:0005007 + ZFA:0005240 KA cell Kolmer-Agduhr cell @@ -815932,7 +816126,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000550 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0005241 intermediate erythroblast @@ -815994,7 +816188,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0005014 + ZFA:0005244 uberon UBERON:2005244 @@ -816158,8 +816352,8 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0016631 - ZFA:0005608 + + uberon UBERON:2005255 obsolete frontal-parietal joint @@ -818217,7 +818411,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol https://github.com/obophenotype/uberon/issues/3161 - UBERON:0013764 + uberon UBERON:2005411 Obsoleted as it is redundant with 'common crus of semircular duct'. @@ -818589,7 +818783,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Part of cranial nerve X. - UBERON:0011213 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0007011 rX @@ -819734,7 +819928,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0005362 + This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ZFA:0007067 gX @@ -823048,7 +823242,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Undifferentiated cell that is produced by early cleavages of the fertilized egg (zygote). - UBERON:2000093 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010282 uberon @@ -823203,7 +823397,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:3000381 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000061 @@ -823496,7 +823690,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002384 + uberon UBERON:3000099 obsolete connective tissue proper @@ -823759,7 +823953,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Also known as fibrous connective tissue. Forms ligaments and tendons and is characterized by densely packed collagen fibers that have great tensile strength. - UBERON:0011823 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000121 @@ -825529,7 +825723,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ossified posterior articular portion of Meckel's cartilage. - UBERON:2001805 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000347 @@ -825765,7 +825959,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Sliver of bone that invest part of or all the posterior aspect of each antorbital plane. - UBERON:0001682 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon neopalatine uberon @@ -825847,7 +826041,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012073 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Logical definition added by cjm. uberon palatine teeth @@ -826207,7 +826401,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Tooth-bearing part of the maxilla. - UBERON:0004527 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon crista dentalis @@ -826240,7 +826434,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Tooth-bearing part of the premaxilla. - UBERON:0034898 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000397 @@ -826486,7 +826680,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Lingual ledge on the inner surface of the maxilla. - UBERON:0005871 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon lamina horizontalis @@ -826519,7 +826713,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Lingual ledge on the inner surface of the premaxilla. - UBERON:0034900 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000414 @@ -827075,7 +827269,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:2001626 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon. Modified by cjm: added logical definition uberon premaxillary teeth @@ -827610,7 +827804,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Palatal bones of intramembranous origin that lie anterior to the otic capsules, lateral to the orbits, and medial to the maxillae. - UBERON:0010389 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon pterygoidien @@ -828415,7 +828609,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol The suprangular or surangular is a jaw bone found in most land vertebrates, except mammals. It's usually in the back of the jaw, on the upper edge, and is connected to all other jaw bones: dentary, angular, splenial and articular. It is often a muscle attachment site. - UBERON:0011636 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000587 @@ -828441,7 +828635,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Median, unpaired bone that can form the dorsal margin of the foramen magnum. - UBERON:0004747 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010834 uberon @@ -830696,7 +830890,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ridge on the ventral aspect of the humeral shaft. It serves for the attachment of the mm pectoralis and shoulder musculature used primarily for limb adduction. - UBERON:0002498 + crista ventralis crista ventralis humeri uberon @@ -831371,7 +831565,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Posterior body of the ilium that forms the anterior half of the acetabulum. - UBERON:0010747 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000775 @@ -833106,7 +833300,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Small eminence on the distal articular head of the radius. - UBERON:3000840 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3000841 @@ -833426,7 +833620,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Dorsal portion of the ilial corpus, located above the acetabulum. - UBERON:4200125 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon dorsal acetabular expansion @@ -833974,7 +834168,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Paired cartilaginous rods that lie within the copulatory organ (or so-called tail) and are attached to the posteroventral part of the pelvic girdle. - UBERON:3010240 + uberon postpubis UBERON:3000885 @@ -834685,7 +834879,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Dorso-lateral portion of the pectoral girdle. - UBERON:0006849 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon pars scapularis @@ -835319,7 +835513,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Paired, anterior element that articulates medially with basibranchial I and posterolaterally with the paired hypohyals. This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0011614 + uberon UBERON:3000957 obsolete basihyal @@ -835675,7 +835869,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol The largest part of the nasal cavity, containing the olfactory epithelium. - UBERON:3000089 + uberon UBERON:3000992 obsolete principal cavity @@ -835822,7 +836016,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0008904 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3001001 @@ -837224,7 +837418,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innervated; dorsal in the rectus group. - UBERON:0006323 + uberon UBERON:3010099 obsolete musculus rectus superior @@ -837261,7 +837455,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innervated; ventral in the rectus group. - UBERON:0006322 + uberon UBERON:3010101 obsolete musculus rectus inferior @@ -837384,7 +837578,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innervated; medial in the rectus group. - UBERON:0001602 + uberon UBERON:3010113 obsolete musculus rectus medialis @@ -837446,7 +837640,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cranial nerve III innverated; ventral in the obliquus group. - UBERON:0006320 + uberon UBERON:3010117 obsolete musculus obliquus inferior @@ -837738,7 +837932,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ventral plate anterior to and confluent with ethmoid plate. - UBERON:0011242 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010137 @@ -837864,7 +838058,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Plate of cartilage occluding fenestra ovalis. - UBERON:3010728 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010145 @@ -837889,18 +838083,21 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - - Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. + OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. + https://github.com/obophenotype/uberon/issues/2804 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon ectethmoid UBERON:3010146 - lacrimal + The synonym of this term has been merged into 'lacrimal bone'. + obsolete lacrimal + true - Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. + OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal. AAO:EJS @@ -837921,7 +838118,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:3000087 + uberon UBERON:3010156 obsolete middle cavity @@ -837933,7 +838130,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000207 + uberon UBERON:3010159 obsolete olfactory receptor cell @@ -837945,7 +838142,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000853 + uberon UBERON:3010160 replaced with 'olfactory epithelium support cell' due to axiom (removed) that it was part of olfactory epithelium. @@ -838817,7 +839014,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol An anatomical cluster that is part of the cranium and structurally supports the eye. - UBERON:0001697 + uberon UBERON:3010220 obsolete orbital region @@ -838836,7 +839033,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon - UBERON:0010913 + uberon UBERON:3010224 obsolete vertebral @@ -839078,7 +839275,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000017 + UBERON:3010302 uberon UBERON:3010256 @@ -839231,7 +839428,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell which has as its part a cytoskeleton that allows for tight cell to cell contact and which has apical-basal cell polarity. - CL:0000066 + uberon UBERON:3010274 obsolete epithelial cell @@ -839394,7 +839591,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Polymorphic cell type that forms cartilage. - CL:0000138 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010286 @@ -839419,7 +839616,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000064 + ciliated cell uberon UBERON:3010287 @@ -839439,7 +839636,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A connective tissue cell that secretes an extracellular matrix rich in collagen and other macromolecules. - CL:0000057 + uberon UBERON:3010288 obsolete fibroblast @@ -839457,7 +839654,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000477 + uberon UBERON:3010289 obsolete follicle cell @@ -839469,7 +839666,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000039 + uberon germ line cells UBERON:3010290 @@ -839488,7 +839685,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000300 + uberon UBERON:3010291 obsolete gamete @@ -839500,7 +839697,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000586 + germ cells uberon UBERON:3010292 @@ -839520,7 +839717,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Primitive cell type that is involved in the reproduction of the organism beginning with the sexual differentiation of the gonads at NF stage 52. In males specifically, it migrates from the genital ridge cortical region into the medullary tissue, where it forms spermatogonia. In females it is embedded in the cortical region and multiplies as oogonia. - CL:0000670 + PGC uberon primitive germ cell @@ -839553,7 +839750,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A mature male germ cell that develops from a spermatid. - CL:0000019 + uberon sperm spermatozoa @@ -839585,7 +839782,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000023 + uberon UBERON:3010296 obsolete oocyte @@ -839598,7 +839795,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A germ cell that is a primordial oocyte in a female and that develops into secondary oogonia by mitotic division. - CL:0000654 + uberon primary oogonia UBERON:3010297 @@ -839624,7 +839821,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A germ cell that is a primordial spermatocyte in a male and that develops into secondary spermatogonia by mitotic division. - CL:0000656 + uberon primary spermatogonia UBERON:3010298 @@ -839650,7 +839847,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of germ cell that results from the mitotic division of a primary oogonium. - CL:0000655 + uberon secondary oogonia UBERON:3010299 @@ -839676,7 +839873,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of germ cell that results from the mitotic division of a primary spermatogonium. - CL:0000657 + uberon secondary spermatogonia UBERON:3010300 @@ -839701,7 +839898,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000018 + uberon UBERON:3010301 obsolete spermatid @@ -839774,7 +839971,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A large distinctive organelle aggregate comprised of mitochondria found in developing oocytes of many species. From Pepling et al. 2007. - GO:0032019 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon Balbiani body mitochondrial cloud @@ -839801,7 +839998,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0002090 + uberon UBERON:3010307 obsolete polar body @@ -839814,7 +840011,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the B cell, T cell, or natural killer cell lineage. - CL:0000542 + uberon UBERON:3010308 obsolete lymphocyte @@ -839833,7 +840030,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive. - CL:0000236 + uberon UBERON:3010309 obsolete B cell @@ -839852,7 +840049,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. - CL:0000623 + NK cell uberon UBERON:3010310 @@ -839878,7 +840075,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex. - CL:0000084 + uberon UBERON:3010311 obsolete T cell @@ -839897,7 +840094,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol An immature T cell located in the thymus. - CL:0000893 + uberon UBERON:3010312 obsolete thymocyte @@ -839916,7 +840113,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. - CL:0000056 + uberon UBERON:3010313 obsolete myoblast @@ -839967,7 +840164,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell that is the basic unit of nervous tissue, each consisting of a body, an axon, and dendrites, and the purpose of which is to receive, conduct, and transmit impulses in the nervous system. - CL:0000540 + uberon nerve cell UBERON:3010315 @@ -839993,7 +840190,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell type that contains a deposition of coloring matter. - CL:0000147 + uberon chromatophore UBERON:3010317 @@ -840019,7 +840216,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color. - CL:0000431 + uberon guanophore UBERON:3010318 @@ -840045,7 +840242,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance. - CL:0000148 + uberon melonophore UBERON:3010319 @@ -840071,7 +840268,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red. - CL:0000430 + uberon UBERON:3010320 obsolete xanthophore @@ -840090,7 +840287,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell type that is a component of the glomus. - CL:0000653 + uberon UBERON:3010321 obsolete podocyte @@ -840109,7 +840306,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. - CL:0000034 + uberon UBERON:3010322 obsolete stem cell @@ -840128,7 +840325,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system. - CL:0000037 + HSC uberon UBERON:3010323 @@ -840155,7 +840352,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Diploid cell produced by the fusion of sperm cell nucleus and egg cell. - CL:0000365 + fertilized egg uberon UBERON:3010324 @@ -840180,7 +840377,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012284 + uberon animal UBERON:3010325 @@ -840284,7 +840481,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012285 + uberon UBERON:3010331 obsolete vegetal hemisphere @@ -840332,7 +840529,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0010230 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon eye ball uberon @@ -840358,7 +840555,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0007625 + uberon UBERON:3010350 replaced with pigment epithelium of eye because was previously asserted to be part of a camera-type eye. @@ -841901,7 +842098,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A thin membrane which attaches the testes to the kidneys and supports the efferent ductules from the testes to the kidneys. - UBERON:0011879 + uberon UBERON:3010530 obsolete mesorchium @@ -841920,7 +842117,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Region of the neurohypophysis which secretes neurohypophyseal hormones, regulating water loss and salt balance. - UBERON:0003217 + uberon UBERON:3010538 obsolete pars nervosa @@ -841971,7 +842168,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002433 + uberon UBERON:3010543 obsolete bilateral pars tuberalis @@ -841984,7 +842181,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers. - CL:0000361 + uberon UBERON:3010552 obsolete gastrula cell @@ -842003,7 +842200,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol An undifferentiated cell produced by early cleavages of the fertilized egg (zygote). - CL:0000353 + uberon UBERON:3010553 obsolete blastoderm cell @@ -842022,7 +842219,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the outer of the three germ layers of the embryo. - CL:0000221 + uberon ectoderm cell UBERON:3010554 @@ -842048,7 +842245,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the inner of the three germ layers of the embryo. - CL:0000223 + uberon endoderm cell UBERON:3010555 @@ -842074,7 +842271,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A cell of the middle germ layer of the embryo. - CL:0000222 + uberon mesoblast mesoderm cell @@ -842554,7 +842751,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000574 + uberon UBERON:3010593 Note that this class originally had axiom that it was part of the integument. However, the term had no definition and one can use the general erythrophore def from CL. @@ -842673,7 +842870,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0012451 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010612 @@ -842905,7 +843102,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A transient rod-like structure ventral to the notochord in salamander embryos. Derived from endoderm. - UBERON:0003058 + uberon UBERON:3010625 obsolete embryonic hypochord @@ -842923,7 +843120,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0000242 + uberon Merkel cells UBERON:3010626 @@ -842943,7 +843140,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A type of mucus and/or fluid secreting cell in larvae. - CL:0000178 + uberon UBERON:3010627 obsolete leydig cells @@ -842962,7 +843159,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Innervates m. rectus superior (m. dorsal rectus). - UBERON:0015162 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010628 @@ -842987,7 +843184,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0001479 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon UBERON:3010630 uberon @@ -843037,7 +843234,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Innervates m. rectus medialis, m. rectus inferior, m. obliquus inferior. - UBERON:0015161 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010632 @@ -843082,7 +843279,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A mucous surface cell type known in tadpoles of Xenopus. - CL:0000160 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010635 @@ -844069,7 +844266,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0008904 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010705 @@ -844599,7 +844796,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0006720 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010730 @@ -845875,7 +846072,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:3010201 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3010812 @@ -846378,7 +846575,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0001675 + uberon UBERON:3011045 Obsoleted as gasserian ganglion is an exact synonym to trigeminal ganglion per Wikipedia @@ -846392,7 +846589,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol OBSOLETE Anatomical system that has as its parts the organs concerned with reproduction, especially the external genital organs. - UBERON:0000990 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon genitalia reproductive system @@ -846421,7 +846618,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002065 + This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:3011081 @@ -846440,7 +846637,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0002364 + tympanic membrane uberon UBERON:3011108 @@ -846517,7 +846714,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0009622 + 2011-04-20T05:22:49Z uberon UBERON:3011122 @@ -846531,7 +846728,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance. - GO:0001503 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon GO:0001503 uberon @@ -846584,7 +846781,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone. - UBERON:2000250 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000004 @@ -846610,7 +846807,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0011614 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000005 @@ -846631,7 +846828,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Endochondral bone that is median and is the anterior-most bone of the ventral hyoid arch. - UBERON:0011618 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000007 @@ -846658,7 +846855,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell of the notochord, often vacuolated or resembles a chondrocyte. - CL:0007005 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000009 @@ -846683,7 +846880,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - CL:0007006 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000010 @@ -846703,7 +846900,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Cell that has the potential to form a skeletal cell type (e.g., cells in periosteum, cells in marrow) and produce extracellular matrix (often mineralized) and skeletal tissue (often mineralized). - CL:0007001 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000012 @@ -846774,7 +846971,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch. - UBERON:0011615 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000014 @@ -846818,7 +847015,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0011153 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000018 @@ -846839,7 +847036,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Epithelial cell that is large, vacuolated, and part of the notochord. - CL:0007008 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000019 @@ -846891,7 +847088,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus. [GOC:mtg_sensu, ISBN:0198547684]. - GO:0005578 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000021 @@ -846920,7 +847117,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Combination of protein fibers, ground substance and tissue fluid; typically has embedded cells. - GO:0031012 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon ECM uberon @@ -846953,7 +847150,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal. - UBERON:2000474 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000024 @@ -847056,7 +847253,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to develop into an ameloblast. - CL:0007000 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000038 @@ -847082,7 +847279,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that is derived from the notochordal mesoderm and produces notochordal tissue (and cartilage tissue in some taxa). - CL:0007008 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000039 @@ -847108,7 +847305,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to form an odontoblast, deposits predentine, and arises from a neural crest cell. - CL:0007003 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000041 @@ -847134,7 +847331,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to develop into a cementoblast. - CL:0007002 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000043 @@ -847160,7 +847357,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to develop into a chondroblast; and arises from neural crest, meseosdermal and notochordal and connective tissue cells. - CL:0007009 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000044 @@ -847186,7 +847383,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Skeletogenic cell that has the potential to transform into an osteoblast, and develops from neural crest or mesodermal cells. - CL:0007010 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000045 @@ -847670,7 +847867,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Odontoblast that non-terminally differentiated, located in the odontogenic papilla and dentine tissue, and transforms from a odontoblast cell. - CL:00007012 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000095 @@ -847696,7 +847893,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Odontoblast that is terminally differentiated and derived from an odontogenic papilla and associated with dentine. - CL:00007013 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000096 @@ -848017,7 +848214,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Osteoblast that is terminally differentiated, located adjacent to acellular or cellular bone tissue within periosteum, and is capable of mineralizing the matrix. - CL:0001039 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000116 @@ -848043,7 +848240,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Osteoblast that is non-terminally differentiated and located in cellular bone tissue or under the periosteum in acellular bone. - CL:0001040 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000117 @@ -848295,7 +848492,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ossification that does not require the replacement of pre-existing tissues, most often a cartilaginous model. - GO:0036072 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000136 @@ -848346,7 +848543,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Ossification that requires the replacement of a pre-existing tissue prior to bone tissue formation. - GO:0036075 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon indirect ossification uberon @@ -848379,7 +848576,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Direct ossification that occurs within mesenchyme with the formation of an osteogenic condensation not associated with a perichondrium. - GO:0001957 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon GO:0001957 uberon @@ -848406,7 +848603,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Direct ossification in which transformation of the pre-existing tissue occurs without dedifferentiation of cells or reinitiation of cell division; direct transformation of a non-bone tissue into a bone tissue. - GO:0036074 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon metaplasia uberon @@ -848439,7 +848636,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Replacement ossification wherein bone tissue replaces cartilage. - GO:0001958 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000143 @@ -848465,7 +848662,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Intramembranous ossification on the surface of a cartilage element as the perichondrium becomes a periosteum, without replacement of cartilage. - GO:0036073 + This class was sourced from an external ontology (vertebrate_skeletal_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon uberon UBERON:4000144 @@ -849601,7 +849798,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol OBSOLETE Claws on the pes. - UBERON:0009567 + uberon UBERON:4100008 Term is redundant with 'nail of pedal digit' (UBERON:0009567). @@ -850074,7 +850271,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol Anteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. - UBERON:0001079 + uberon UBERON:4100120 obsolete prezygapophyses @@ -853079,7 +853276,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol OBSOLETE Eminence or swelling on anatomical surface. - UBERON:0005813 + uberon UBERON:4200132 Term is redundant with "tubercle" (UBERON:0005813). @@ -853910,7 +854107,7 @@ This may be the same as CoBL. incorrectly generalized to teleosts so being obsol - UBERON:0009565 + uberon UBERON:4200179 Term is redundant with 'nail of manual digit' (UBERON:0009565). @@ -855276,7 +855473,7 @@ formulas. Modified from Cooper and Dawson 2009. A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]. - UBERON:3000652 + uberon UBERON:4300001 obsolete maxillary saddle @@ -856806,7 +857003,7 @@ formulas. Modified from Cooper and Dawson 2009. Posteriorly projecting processes allowing de facto contact between consecutive vertebrae (some soft tissues are also present) via articular facets. - UBERON:0001080 + uberon UBERON:4300122 obsolete postzygapophysis @@ -857847,7 +858044,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:0000167 + uberon UBERON:4300187 obsolete buccopharyngeal complex @@ -858204,7 +858401,7 @@ formulas. Modified from Cooper and Dawson 2009. Structures that communicate with the main olfactory chamber and may be located posterior, ventral, or dorsal to it [De Pinna, 1996]. - UBERON:4300152 + uberon UBERON:4300204 Duplicate term. @@ -859949,7 +860146,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:1500006 + uberon UBERON:4400009 Was already defined @@ -864603,7 +864800,7 @@ formulas. Modified from Cooper and Dawson 2009. - FBbt:00000000 + uberon UBERON:6000000 obsolete embryonic germ layer derivative @@ -866186,7 +866383,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/3051 - UBERON:6005380 + uberon UBERON:60005380 Obsoleted because the ID was minted incorrectly. @@ -868145,7 +868342,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - CL:0000373 + uberon UBERON:6001789 Obsoleted as this represents a cell type and therefore belongs to CL. @@ -868190,7 +868387,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - UBERON:6001790 + uberon UBERON:6001791 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -868204,7 +868401,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - UBERON:6001790 + uberon UBERON:6001792 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -868218,7 +868415,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2867 - UBERON:6001790 + uberon UBERON:6001809 Obsoleted as this level of precision is deemed unnecessary in Uberon. Consider using either 'insect histoblast nest' (UBERON:6001790) or a more precise term from a taxon-specific ontology such as FBbt. @@ -869510,7 +869707,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6005514 + uberon UBERON:6004203 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -869997,17 +870194,10 @@ formulas. Modified from Cooper and Dawson 2009. - FBbt:00004579 uberon UBERON:6004579 insect dorsal mesothorax - - - - FBbt:00004579 - - @@ -870562,12 +870752,6 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6005037 insect tracheal primordium - - - - Primordium of a single tracheal metamere of the embryonic/larval tracheal system from its appearance as a placode during stage 11 to the completion of fusion with adjacent tracheal metameres in stage 15/16. There are 10 pairs of tracheal primordia - one pair in each segment from T2 to A8. Each tracheal primordium originates as a slight depression in the lateral ectoderm during stage 10 known as a tracheal placode. During stage 11, these placodes invaginate to form tracheal pits that elongate and branch. These pits close over during stage 13. Fusion of tracheal primordia begins at stage 14 with fusion of the dorsal trunk primordia and is complete by early stage 16. - FlyBase:FBrf0089570 - @@ -870580,6 +870764,12 @@ formulas. Modified from Cooper and Dawson 2009. P2 TrachP FBC:DOS + + + + Primordium of a single tracheal metamere of the embryonic/larval tracheal system from its appearance as a placode during stage 11 to the completion of fusion with adjacent tracheal metameres in stage 15/16. There are 10 pairs of tracheal primordia - one pair in each segment from T2 to A8. Each tracheal primordium originates as a slight depression in the lateral ectoderm during stage 10 known as a tracheal placode. During stage 11, these placodes invaginate to form tracheal pits that elongate and branch. These pits close over during stage 13. Fusion of tracheal primordia begins at stage 14 with fusion of the dorsal trunk primordia and is complete by early stage 16. + FlyBase:FBrf0089570 + @@ -870657,8 +870847,8 @@ formulas. Modified from Cooper and Dawson 2009. The visceral musculature comprises circular and longitudinal fibers which surround the entire intestinal tract, with the exception of the recurrent layer of the proventriculus. The circular fibers derive from a bilaterally symmetrical band of mesodermal cells extending continuously throughout most of the germ band. The longitudinal fibers derive from clusters of mesodermal cells which appear during stage 12 at the posterior end of the embryo and migrate anteriorly. - CL:0008007 - FBbt:00005070 + + uberon UBERON:6005070 obsolete visceral muscle @@ -870738,21 +870928,21 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt:00005168 sensillum uberon UBERON:6005168 insect external sensory organ - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -870833,14 +871023,14 @@ formulas. Modified from Cooper and Dawson 2009. - + Section of the insect foregut anterior to the esophagus. FBbt:00005380 uberon UBERON:6005380 insect pharynx - + @@ -870853,7 +871043,7 @@ formulas. Modified from Cooper and Dawson 2009. - + FBbt @@ -870939,7 +871129,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:0007688 + uberon UBERON:6005413 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -870989,7 +871179,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6005427 + uberon UBERON:6005428 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -871003,7 +871193,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6001059 + uberon UBERON:6005434 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -871017,7 +871207,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6000128 + uberon UBERON:6005436 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -871031,7 +871221,7 @@ formulas. Modified from Cooper and Dawson 2009. https://github.com/obophenotype/uberon/issues/2972 - UBERON:6005538 + uberon UBERON:6005439 Obsoleted as this level of precision is deemed unnecessary for Uberon. @@ -872281,7 +872471,7 @@ formulas. Modified from Cooper and Dawson 2009. - FBbt:00007435 + uberon endocrine organ UBERON:6007435 @@ -872407,7 +872597,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -872420,14 +872610,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:6026000 insect trunk mesoderm derivative - + - + https://github.com/obophenotype/uberon/issues/2050 @@ -872610,7 +872800,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:0011676 + uberon UBERON:6057001 Obsoleted as it is redundant with 'subdivision of organism along main body axis', which is not restricted to insects. @@ -872769,7 +872959,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The distal-most point of the medial condyle of a femur. - UBERON:0009984 + uberon UBERON:7500033 too specific of a term @@ -872793,7 +872983,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The distal-most point of the trochlea of a humerus. - UBERON:0000144 + uberon UBERON:7500034 too specific of a term. @@ -872813,7 +873003,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE Outermost point of a tail. - UBERON:0010162 + uberon UBERON:7500035 term already exists @@ -872833,7 +873023,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line along a tail that extends from the first caudal vertebra to the last cuadal vertebra. - OBA:VT0002758 + uberon UBERON:7500036 No longer part of the pattern design for lengths of lines. Can be found in OBA as tail length (http://purl.obolibrary.org/obo/OBA_VT0002758). @@ -872853,7 +873043,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a ear that connects the helix of the outer ear to the intertragus incisure of an ear. - FOVT:0000005 + uberon UBERON:7500037 No longer part of the pattern design for lengths of lines. Can be found in FOVT as ear length to notch (FOVT:0000005). @@ -872873,7 +873063,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a hindfoot that connects the distal-most part of the longest nail to the posterior-most part of a foot. - FOVT:0000003 + uberon UBERON:7500038 No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length with nail (FOVT:0000003). @@ -872893,7 +873083,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The posterior-most point of a foot. - UBERON:0008338 + uberon UBERON:7500039 already exists (sole of foot) @@ -872913,7 +873103,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE The distal-most point of a cutaneous appendage. - UBERON:0001705 + uberon UBERON:7500040 no longer needed @@ -872933,7 +873123,7 @@ formulas. Modified from Cooper and Dawson 2009. The distal-most point of a digit. - UBERON:0009551 + uberon UBERON:7500041 duplicate with UBERON:0009551 'distal segment of digit'. @@ -872953,7 +873143,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a hindfoot that connects the end of the longest digit to the posterior-most part of a foot. - FOVT:0000004 + uberon UBERON:7500042 No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length without nail (FOVT:0000004). @@ -872973,7 +873163,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of the sacrum. - FOVT:0000002 + uberon UBERON:7500043 No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length without tail (FOVT:0000002). @@ -872993,7 +873183,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of a tail. - FOVT:0000001 + uberon UBERON:7500044 No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length with tail (FOVT:0000001). @@ -873013,7 +873203,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a femur that connects the medial condyle to the greater trochanter. - FOVT:0000006 + uberon UBERON:7500045 No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from greater trochanter to medial condyle (FOVT:0000006). @@ -873177,7 +873367,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a femur that connects the medial condyle to the head of a femur. - FOVT:0000007 + uberon UBERON:7500050 No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from caput to medial condyle (FOVT:0000007). @@ -873197,7 +873387,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a humerus that connects the trochlea to the proximal head. - FOVT:0000008 + uberon UBERON:7500051 No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to caput (FOVT:0000008). @@ -873454,7 +873644,7 @@ formulas. Modified from Cooper and Dawson 2009. OBSOLETE An anatomical line of a humerus that connects the trochlea to the ventral tubercle. - FOVT:0000009 + uberon UBERON:7500060 No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to ventral tubercle (FOVT:0000009). @@ -873921,7 +874111,7 @@ formulas. Modified from Cooper and Dawson 2009. A trochlea on the distal end of a femur that interacts with the patella. - UBERON:4200096 + 2021-06-02T00:19:07Z uberon UBERON:7500077 @@ -874162,7 +874352,7 @@ formulas. Modified from Cooper and Dawson 2009. - UBERON:7500080 + 2021-08-03T21:28:12Z uberon UBERON:7500088 @@ -875419,8 +875609,8 @@ formulas. Modified from Cooper and Dawson 2009. - - + + A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles. Purkinje fibre network @@ -875428,11 +875618,11 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8000009 Purkinje fiber network - + - + @@ -875447,7 +875637,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -875455,7 +875645,7 @@ formulas. Modified from Cooper and Dawson 2009. - + https://github.com/obophenotype/uberon/issues/1785 https://orcid.org/0000-0001-5208-3432 https://orcid.org/0000-0002-9791-0064 @@ -875917,7 +876107,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus that is closest to the arterial blood supply and has the highest oxygen concentration. Zone 1 is located in the periportal region of the liver lobule, closest to the portal triad. Hepatocytes in this region are primarily involved in oxidative energy metabolism. @@ -875927,14 +876117,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400001 hepatic acinus zone 1 - + - + PMID:28126520 @@ -875962,7 +876152,7 @@ formulas. Modified from Cooper and Dawson 2009. - + The region of the hepatic acinus immediately surrounding the central veins. This region has the lowest oxygen concentration in the acinus. Zone 3 is located in the centrilobular region of the liver lobule, closest to the central vein. Hepatocytes in this region are the primary location for the biotransformation of drugs. @@ -875974,14 +876164,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400002 hepatic acinus zone 3 - + - + PMID:28126520 @@ -876021,7 +876211,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876043,14 +876233,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400003 hepatic acinus zone 2 - + - + PMID:28126520 @@ -876114,7 +876304,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876130,14 +876320,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400006 liver lobule periportal region - + - + PMID:28126520 @@ -876165,7 +876355,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876181,14 +876371,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400007 liver lobule centrilobular region - + - + PMID:28126520 @@ -876216,7 +876406,7 @@ formulas. Modified from Cooper and Dawson 2009. - + @@ -876238,14 +876428,14 @@ formulas. Modified from Cooper and Dawson 2009. UBERON:8400008 liver lobule midzonal region - + - + PMID:28126520 @@ -878850,9 +879040,11 @@ formulas. Modified from Cooper and Dawson 2009. Submucous nerve plexus that is located in the colon. + uberon UBERON:8410059 + submucous nerve plexus of colon @@ -878996,9 +879188,11 @@ formulas. Modified from Cooper and Dawson 2009. Myenteric nerve plexus that is part of the small intestine. + uberon UBERON:8410063 + myenteric nerve plexus of small intestine @@ -888814,12 +889008,14 @@ formulas. Modified from Cooper and Dawson 2009. A tree-like structure formed by chorionic villi that sprouts from the chorionic plate in the placental disc. The arborous shape of the chorionic villous tree provides maximal contact area with maternal blood in the intervillous space. + 2023-12-12T11:57:24Z villous tree placental villous tree uberon UBERON:8600026 + chorionic villous tree @@ -888860,11 +889056,13 @@ formulas. Modified from Cooper and Dawson 2009. A chorionic villus that provides structural support to the villous tree. A chorionic stem villus is characterized by a condensed fibrous stroma in which fetal arteries, veins, arterioles, and venules are embedded. It represents a distributing framework for fetal chorionic circulation, supplying the floating villi. It can exhibit a diameter ranging from approximately 3000 μm (trunci near the chorionic plate) to 80 μm (smallest ramuli chorii). + 2023-12-12T13:00:59Z placental stem villus uberon UBERON:8600027 + chorionic stem villus @@ -888888,11 +889086,13 @@ formulas. Modified from Cooper and Dawson 2009. The first generation of a tertiary villus that is derived from a syncytial sprout by the invasion of the mesenchyme, in which blood vessels differentiate through vasculogenesis, and gradually transforms into a new immature intermediate villus. A chorionic mesenchymal villus has a thick trophoblastic covering, and cytotrophoblast cells are interposed between syncytium and the trophoblastic basal lamina over 50–100% of the surface. The stroma is characterized by loosely arranged collagen fibers that enmesh mesenchymal and some villous macrophages. The fetal capillaries are poorly developed. + 2023-12-12T13:38:12Z mesenchymal villus uberon UBERON:8600028 + chorionic mesenchymal villus @@ -888927,11 +889127,13 @@ formulas. Modified from Cooper and Dawson 2009. A bulbous, immature chorionic villus that is formed of loose connective tissue with few fetal vessels. A chorionic immature intermediate villus develops from a chorionic mesenchymal villus, and is the forerunner of a chorionic stem villus. + 2023-12-12T13:41:05Z uberon immature intermediate villus UBERON:8600029 + chorionic immature intermediate villus @@ -888957,11 +889159,13 @@ formulas. Modified from Cooper and Dawson 2009. The most distal part of a chorionic villus. A chorionic terminal villus is a grape-like structure characterized by a high degree of capillarization and highly dilated sinusoids. A terminal villus has less stroma and a discontinuous cytotrophoblast layer, and contains 4–6 fetal capillaries per cross section. It exhibits a diameter ranging from 40 to about 80 μm. + 2023-12-12T13:41:16Z terminal villus uberon UBERON:8600030 + chorionic terminal villus @@ -888991,11 +889195,13 @@ formulas. Modified from Cooper and Dawson 2009. A slender branch of a chorionic stem villus. A chorionic mature intermediate villus lacks fetal arterioles and venules in the stroma, which is composed of slender fetal capillaries embedded into a loose connective tissue that is rich in cells but poor in fibers. It exhibits a diameter ranging from 60 to about 100 μm. + 2023-12-12T13:41:28Z mature intermediate villus uberon UBERON:8600031 + chorionic mature intermediate villus @@ -889207,6 +889413,7 @@ formulas. Modified from Cooper and Dawson 2009. A section of the long descending thin limb of the loop of Henle that is part of the outer medulla of the kidney. + 2024-01-15T13:28:03Z @@ -889214,6 +889421,7 @@ formulas. Modified from Cooper and Dawson 2009. uberon DTL2 UBERON:8600036 + kidney loop of Henle long descending thin limb outer medulla @@ -889255,6 +889463,7 @@ formulas. Modified from Cooper and Dawson 2009. A section of the long descending thin limb of the loop of Henle that is part of the inner medulla of the kidney. + 2024-01-15T13:32:25Z @@ -889262,6 +889471,7 @@ formulas. Modified from Cooper and Dawson 2009. uberon DTL3 UBERON:8600037 + kidney loop of Henle long descending thin limb inner medulla @@ -889297,11 +889507,13 @@ formulas. Modified from Cooper and Dawson 2009. A disc-shaped structure that is part of the placenta. A placental disc supports fetal development through the exchange of nutrients between maternal and fetal bloodstreams. The placental disc is structured to keep the blood streams separate, while maximizing surface area for the transport of nutrients between them, to maintain an immunological barrier. + 2024-01-16T17:50:20Z placental disk uberon UBERON:8600038 + placental disc @@ -889343,10 +889555,12 @@ formulas. Modified from Cooper and Dawson 2009. A mesenchyme that is part of a chorionic villus. + 2024-01-16T18:13:12Z uberon UBERON:8600039 + chorionic villous mesenchyme @@ -889380,11 +889594,13 @@ formulas. Modified from Cooper and Dawson 2009. A blood vessel that is part of a chorionic stem villus. + 2024-01-16T18:14:32Z stem villous vessel uberon UBERON:8600040 + chorionic stem villous blood vessel @@ -889425,11 +889641,13 @@ formulas. Modified from Cooper and Dawson 2009. A capillary that is part of a chorionic terminal villus. This capillary is generally narrow, but displays sinusoidal dilations along its length, often at the points of acute bends. These dilations bring the capillary endothelium into close contact with the overlying syncytiotrophoblast to form a vasculosyncytial membrane. + 2024-01-16T18:16:47Z terminal villous capillary uberon UBERON:8600041 + chorionic terminal villous capillary @@ -889470,10 +889688,12 @@ formulas. Modified from Cooper and Dawson 2009. A lymphatic vessel that is part of an endometrium. + 2024-01-16T18:18:36Z uberon UBERON:8600042 + endometrial lymphatic vessel @@ -889805,6 +890025,2012 @@ formulas. Modified from Cooper and Dawson 2009. + + + + + + + + + + + + + + + + + + A vein that is tributary of the main pulmonary veins and drains oxygenated blood from a segment of the lung. + + 2024-06-06T09:53:48Z + FMA:9411 + segmental pulmonary vein + + + + + A vein that is tributary of the main pulmonary veins and drains oxygenated blood from a segment of the lung. + https://radiologykey.com/6-pulmonary-artery-and-vein/ + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the segmental pulmonary veins and drains oxygenated blood from a subsegment of the lung. + + 2024-06-06T09:53:48Z + FMA:9413 + subsegmental pulmonary vein + + + + + A vein that is tributary of the segmental pulmonary veins and drains oxygenated blood from a subsegment of the lung. + https://radiologykey.com/6-pulmonary-artery-and-vein/ + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the azygos vein and drains blood from the esophagus. + + 2024-06-06T09:53:48Z + FMA:4748 + esophageal vein + + + + + A vein that is tributary of the azygos vein and drains blood from the esophagus. + wikipedia:Esophageal_veins + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the superior intercostal vein and drains the first intercostal space. + + 2024-06-06T09:53:48Z + FMA:4744 + first posterior intercostal vein + supreme intercostal vein + + + + + A vein that is tributary of the superior intercostal vein and drains the first intercostal space. + wikipedia:Supreme_intercostal_vein + + + + + first posterior intercostal vein + FMA:4744 + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the right coronary artery and supplies the atrioventricular node. + + 2024-06-06T09:53:48Z + FMA:3851 + atrioventricular node branch of right coronary artery + atrioventricular nodal artery + + + + + An artery that branches from the right coronary artery and supplies the atrioventricular node. + wikipedia:Atrioventricular_nodal_branch + + + + + atrioventricular node branch of right coronary artery + FMA:3851 + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the internal iliac vein and drains the anterior surface of the sacrum. + + 2024-06-06T09:53:48Z + FMA:18905 + lateral sacral vein + + + + + A vein that is tributary of the internal iliac vein and drains the anterior surface of the sacrum. + wikipedia:Lateral_sacral_veins + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the internal iliac vein. + + 2024-06-06T09:53:48Z + FMA:18893 + middle rectal vein + middle hemorrhoidal vein + + + + + A vein that is tributary of the internal iliac vein. + wikipedia:Middle_rectal_veins + + + + + middle rectal vein + FMA:18893 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the internal iliac vein and drains the uterus. + + 2024-06-06T09:53:48Z + FMA:18896 + uterine vein + + + + + A vein that is tributary of the internal iliac vein and drains the uterus. + wikipedia:Uterine_veins + + + + + + + + + + + + + + + + A vein that is tributary of a vertebral vein and drains the suboccipital region, adjacent vertebral column, and deep muscles of the neck. + + 2024-06-06T09:53:48Z + FMA:4746 + deep cervical vein + + + + + A vein that is tributary of a vertebral vein and drains the suboccipital region, adjacent vertebral column, and deep muscles of the neck. + wikipedia:Deep_cervical_vein + + + + + + + + + + + + + + + + An artery that is a branch of the segmental pulmonary artery and supplies deoxyge blood to a smaller subsegment of the lung. + + 2024-06-06T09:53:48Z + FMA:9311 + subsegmental pulmonary artery + + + + + An artery that is a branch of the segmental pulmonary artery and supplies deoxyge blood to a smaller subsegment of the lung. + PMID:30057869 + + + + + + + + + + + + + + + + + + + + + + + + + + + A venule that receives drainage from the capillary beds after blood has perfused the pulmonary alveoli, and is tributary of the pulmonary venules. + + 2024-06-06T09:53:48Z + intra-acinar venule + + + + + A venule that receives drainage from the capillary beds after blood has perfused the pulmonary alveoli, and is tributary of the pulmonary venules. + PMID:20110543 + + + + + + + + + + + + + + + An artery that branches from the subclavian artery and supplies the thyroid gland, neck, and upper back regions. + + 2024-06-06T09:53:48Z + FMA:3990 + thyrocervical trunk + + + + + An artery that branches from the subclavian artery and supplies the thyroid gland, neck, and upper back regions. + wikipedia:Thyrocervical_trunk + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the left anterior descending artery and supplies the interventricular septum of the heart. + + 2024-06-06T09:53:48Z + septal perforating artery + + + + + An artery that branches from the left anterior descending artery and supplies the interventricular septum of the heart. + DOI:10.1067/mtc.2001.113604 + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the right coronary artery or the circumflex artery and supplies the posterior and lateral walls of the left ventricle. + + 2024-06-06T09:53:48Z + posterolateral artery + + + + + An artery that branches from the right coronary artery or the circumflex artery and supplies the posterior and lateral walls of the left ventricle. + doi:10.53347/rID-35642 + + + + + + + + + + + + + + + + A vein that is tributary of the femoral vein and drains blood from the front and middle areas of the thigh. + + 2024-06-06T09:53:48Z + FMA:70921 + set of lateral circumflex femoral veins + lateral femoral circumflex vein + + + + + A vein that is tributary of the femoral vein and drains blood from the front and middle areas of the thigh. + https://www.kenhub.com/en/library/anatomy/femoral-vein + + + + + set of lateral circumflex femoral veins + FMA:70921 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the anterior internal vertebral venous plexus and drains blood from the vertebral bodies. + + 2024-06-06T09:53:48Z + FMA:321542 + basivertebral vein + + + + + A vein that is tributary of the anterior internal vertebral venous plexus and drains blood from the vertebral bodies. + doi:10.53347/rID-36991 + + + + + + + + + + + + + + + + + + + + + A venule that is tributary of the bronchial veins and drains blood from the bronchi and bronchioles of the lungs. + + 2024-06-06T09:53:48Z + bronchial venule + + + + + A venule that is tributary of the bronchial veins and drains blood from the bronchi and bronchioles of the lungs. + wikipedia:Bronchial_veins + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the facial vein and drains blood from the chin and lower lip. + + 2024-06-06T09:53:48Z + mental vein + + + + + A vein that is tributary of the facial vein and drains blood from the chin and lower lip. + doi:10.17354/ijss/2016/337 + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the lingual vein and drains blood from the tongue. + + 2024-06-06T09:53:48Z + FMA:50830 + deep lingual vein + + + + + A vein that is tributary of the lingual vein and drains blood from the tongue. + wikipedia:Deep_lingual_vein + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the lingual vein and drains blood from the dorsum of the tongue, and the sides of the tongue. + + 2024-06-06T09:53:48Z + FMA:50826 + dorsal lingual vein + + + + + A vein that is tributary of the lingual vein and drains blood from the dorsum of the tongue, and the sides of the tongue. + wikipedia:Dorsal_lingual_veins + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the lingual vein and drains blood from the ventral (inferior) surface of the tongue and the sublingual glands. + + 2024-06-06T09:53:48Z + FMA:50836 + sublingual vein + + + + + A vein that is tributary of the lingual vein and drains blood from the ventral (inferior) surface of the tongue and the sublingual glands. + wikipedia:Sublingual_vein + + + + + + + + + + + + + + + + + + + + + + A venous plexus tha connects the middle and superior thyroid veins. + + 2024-06-06T09:53:48Z + thiroid venous plexus + glandular venous plexus + + + + + A venous plexus tha connects the middle and superior thyroid veins. + https://www.anatomy.net/superior-thyroid-vein + + + + + thiroid venous plexus + doi:10.53347/rID-70578 + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the axillary vein and drains blood from the region around the neck of the humerus. + + 2024-06-06T09:53:48Z + circumflex humeral vein + + + + + A vein that is tributary of the axillary vein and drains blood from the region around the neck of the humerus. + wikipedia:Axillary_vein + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the axillary vein and drains blood from the thoracoacromial region, including the pectoral, shoulder, and clavicular regions. + + 2024-06-06T09:53:48Z + FMA:23058 + thoraco-acromial vein + thoracoacromial vein + + + + + A vein that is tributary of the axillary vein and drains blood from the thoracoacromial region, including the pectoral, shoulder, and clavicular regions. + wikipedia:Axillary_vein + + + + + thoraco-acromial vein + FMA:23058 + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the external jugular vein and drains blood from the superficial muscles of the back, mainly the trapezius muscle. + + 2024-06-06T09:53:48Z + FMA:50858 + transverse cervical vein + + + + + A vein that is tributary of the external jugular vein and drains blood from the superficial muscles of the back, mainly the trapezius muscle. + wikipedia:Transverse_cervical_veins + + + + + + + + + + + + + + + + + + + + + + + A venous plexus that is tributary of the deep cervical veins and drains blood from the suboccipital region. + + 2024-06-06T09:53:48Z + FMA:50803 + suboccipital venous plexus + + + + + A venous plexus that is tributary of the deep cervical veins and drains blood from the suboccipital region. + doi:10.1227/01.neu.0000303217.53607.d9 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An arteriole that branches from the pulmonary arteries and supplies deoxygenated blood to the pulmonary capillaries and alveolar capillaries of the lungs. + + 2024-06-06T09:53:48Z + FMA:279896 + set of all pulmonary arterioles + pulmonary arteriole + + + + + An arteriole that branches from the pulmonary arteries and supplies deoxygenated blood to the pulmonary capillaries and alveolar capillaries of the lungs. + https://radiologykey.com/6-pulmonary-artery-and-vein/ + + + + + set of all pulmonary arterioles + FMA:279896 + + + + + + + + + + + + + + + + An artery of the neck that branches from the external carotid artery and supplies the pharynx. + + 2024-06-06T09:53:48Z + FMA:49497 + ascending pharyngeal artery + + + + + An artery of the neck that branches from the external carotid artery and supplies the pharynx. + wikipedia:Ascending_pharyngeal_artery + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the internal carotid artery and supplies the anterior clinoid process of the dura mater. + + 2024-06-06T09:53:48Z + dural artery + + + + + An artery that branches from the internal carotid artery and supplies the anterior clinoid process of the dura mater. + doi:10.1016/j.wneu.2018.12.071 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the descending thoracic aorta and supplies the dorsal portion of the pericardium. + + 2024-06-06T09:53:48Z + FMA:69329 + pericardial artery + + + + + An artery that branches from the descending thoracic aorta and supplies the dorsal portion of the pericardium. + wikipedia:Descending_thoracic_aorta + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the internal thoracic artery and supplies the pericardium and the diaphragm. + + 2024-06-06T09:53:48Z + FMA:3964 + pericardiacophrenic artery + percardiacophrenic artery + + + + + An artery that branches from the internal thoracic artery and supplies the pericardium and the diaphragm. + wikipedia:Pericardiacophrenic_artery + + + + + pericardiacophrenic artery + FMA:3964 + + + + + + + + + + + + + + + + A vein that is tributary of the great saphenous vein and drains blood from the inguinal region and the anterior abdominal wall. + + 2024-06-06T09:53:48Z + FMA:44319 + superficial circumflex iliac vein + superficial iliac circumflex vein + + + + + A vein that is tributary of the great saphenous vein and drains blood from the inguinal region and the anterior abdominal wall. + wikipedia:Great_saphenous_vein + + + + + superficial circumflex iliac vein + FMA:44319 + + + + + + + + + + + + + + + + A vein that is tributary of the posterior tibial vein and drains blood from the lateral compartment of the leg. + + 2024-06-06T09:53:48Z + FMA:71587 + set of peroneal veins + fibular vein + + + + + A vein that is tributary of the posterior tibial vein and drains blood from the lateral compartment of the leg. + wikipedia:Fibular_veins + + + + + set of peroneal veins + FMA:71587 + + + + + + + + + + + + + + + + + + + + + + + A venule that is tributary of the prostatic venous plexus and drains blood from the prostate gland. + + 2024-06-06T09:53:48Z + prostatic venule + + + + + A venule that is tributary of the prostatic venous plexus and drains blood from the prostate gland. + https://www.kenhub.com/en/library/anatomy/prostatic-venous-plexus + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A venule that branches from the hepatic portal vein to transport nutrient-rich blood from the gastrointestinal tract and spleen to supply the liver. The hepatic portal venule is tributary of the hepatic sinusoids. + + 2024-06-06T09:53:48Z + hepatic portal venule + + + + + A venule that branches from the hepatic portal vein to transport nutrient-rich blood from the gastrointestinal tract and spleen to supply the liver. The hepatic portal venule is tributary of the hepatic sinusoids. + wikipedia:Liver_sinusoid + + + + + + + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the inferior alveolar artery and supplies the roots and pulp of the teeth of the lower jaw. It forms anastomoses with its contralateral partner. + + 2024-06-06T09:53:48Z + incisor artery + + + + + An artery that branches from the inferior alveolar artery and supplies the roots and pulp of the teeth of the lower jaw. It forms anastomoses with its contralateral partner. + wikipedia:Inferior_alveolar_artery + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the angular vein and drains blood from the superficial tissues and skin of the dorsum (bridge) and ala (wings) of the nose. + + 2024-06-06T09:53:48Z + FMA:50910 + external nasal vein + + + + + A vein that is tributary of the angular vein and drains blood from the superficial tissues and skin of the dorsum (bridge) and ala (wings) of the nose. + https://www.anatomy.net/angular-vein + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the angular vein and drains blood from the muscles and skin of the forehead. + + 2024-06-06T09:53:48Z + FMA:50898 + supratrochlear vein + + + + + A vein that is tributary of the angular vein and drains blood from the muscles and skin of the forehead. + wikipedia:Angular_vein + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the angular veins and drains blood from the bridge of the nose. + + 2024-06-06T09:53:48Z + transverse nasal root vein + + + + + A vein that is tributary of the angular veins and drains blood from the bridge of the nose. + https://plasticsurgerykey.com/veins-of-the-face-and-neck/ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the cavernous sinus and drains blood from the pituitary gland. + + 2024-06-06T09:53:48Z + hypophyseal vein + + + + + A vein that is tributary of the cavernous sinus and drains blood from the pituitary gland. + https://www.kenhub.com/en/library/anatomy/the-cavernous-sinus + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the transverse sinus and drains blood from the adjacent cortical regions of the temporal lobe. The inferior anastomotic vein forms an anastomosis (connection) between the superficial middle cerebral vein anteriorly and the transverse sinus posteriorly. + + 2024-06-06T09:53:48Z + FMA:51239 + inferior anastomotic vein + + + + + A vein that is tributary of the transverse sinus and drains blood from the adjacent cortical regions of the temporal lobe. The inferior anastomotic vein forms an anastomosis (connection) between the superficial middle cerebral vein anteriorly and the transverse sinus posteriorly. + wikipedia:Inferior_anastomotic_vein + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the brachial vein and drains blood from the lateral structures of the forearm, carpal and metacarpal bones, joints of the hand, and lateral forearm muscles. + + 2024-06-06T09:53:48Z + FMA:22947 + radial vein + + + + + A vein that is tributary of the brachial vein and drains blood from the lateral structures of the forearm, carpal and metacarpal bones, joints of the hand, and lateral forearm muscles. + wikipedia:Radial_veins + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm. + + 2024-06-06T09:53:48Z + FMA:22950 + ulnar vein + + + + + A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm. + wikipedia:Ulnar_veins + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An arteriole that branches from the pulmonary arteriole and supplies deoxygenated blood to the pulmonary capillaries in the alveoli of the lungs. + + 2024-06-06T09:53:48Z + intra-acinar arteriole + + + + + An arteriole that branches from the pulmonary arteriole and supplies deoxygenated blood to the pulmonary capillaries in the alveoli of the lungs. + PMID:20110543 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the facial artery, and branches to supply the soft palate and the palatine tonsil. + + 2024-06-06T09:53:48Z + FMA:49555 + ascending palatine artery + + + + + An artery that branches from the facial artery, and branches to supply the soft palate and the palatine tonsil. + wikipedia:Ascending_palatine_artery + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the facial artery that runs forward under the mouth, then turns upward upon reaching the chin. + + 2024-06-06T09:53:48Z + FMA:49561 + submental artery + + + + + An artery that branches from the facial artery that runs forward under the mouth, then turns upward upon reaching the chin. + wikipedia:Submental_artery + + + + + + + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the lingual artery and supplies blood to the tongue itself, particularly the body and tip of the tongue. The deep lingual artery travels superiorly in a tortuous course along the under (ventral) surface of the tongue, below the longitudinalis inferior, and above the mucous membrane. + + 2024-06-06T09:53:48Z + FMA:49532 + third part of lingual artery + deep lingual artery + + + + + An artery that branches from the lingual artery and supplies blood to the tongue itself, particularly the body and tip of the tongue. The deep lingual artery travels superiorly in a tortuous course along the under (ventral) surface of the tongue, below the longitudinalis inferior, and above the mucous membrane. + wikipedia:Lingual_artery + + + + + third part of lingual artery + FMA:49532 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the lingual artery and supplies the soft palate, tonsils, epiglottis, palatoglossal arch, and adjacent mucous membrane. The dorsal lingual artery runs along the upper border of the hyoid bone and anastomises with its fellow of the opposite side. + + 2024-06-06T09:53:48Z + FMA:49546 + dorsal lingual artery + + + + + An artery that branches from the lingual artery and supplies the soft palate, tonsils, epiglottis, palatoglossal arch, and adjacent mucous membrane. The dorsal lingual artery runs along the upper border of the hyoid bone and anastomises with its fellow of the opposite side. + https://www.ncbi.nlm.nih.gov/books/NBK554513/ + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion. + + 2024-06-06T09:53:48Z + FMA:79467 + accessory meningeal artery + + + + + An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion. + wikipedia:Accessory_meningeal_artery + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull. + + 2024-06-06T09:53:48Z + FMA:85528 + artery of pterygoid canal + + + + + An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull. + wikipedia:Artery_of_the_pterygoid_canal + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An artery that branches from the maxillary artery and supplies the hard and soft palate. + + 2024-06-06T09:53:48Z + FMA:49791 + descending palatine artery + + + + + An artery that branches from the maxillary artery and supplies the hard and soft palate. + wikipedia:Descending_palatine_artery + + + + + + + + + + An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart. + + 2024-06-06T09:53:48Z + FMA:3862 + anterior interventricular branch of left coronary artery + left anterior descending artery + + + + + An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart. + wikipedia:Left_anterior_descending_artery + + + + + anterior interventricular branch of left coronary artery + FMA:3862 + + + + + + + + + + + + + + + + + + + + + + + A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal. + + 2024-06-06T09:53:48Z + FMA:4869 + anterior internal vertebral venous plexus + + + + + A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal. + wikipedia:Internal_vertebral_venous_plexuses + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins + + 2024-06-06T09:53:48Z + FMA:76736 + intervertebral vein + + + + + A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins + https://www.kenhub.com/en/library/anatomy/veins-of-the-vertebral-column + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region. + + 2024-06-06T09:53:48Z + FMA:70889 + set of lumbar veins + lumbar vein + + + + + A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region. + https://www.kenhub.com/en/library/anatomy/lumbar-veins + + + + + set of lumbar veins + FMA:70889 + + + + + diff --git a/uberon.obo b/uberon.obo index fcd9631eb..7aa64f20c 100755 --- a/uberon.obo +++ b/uberon.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2024-05-13 +data-version: releases/2024-07-02 subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -81,6 +81,7 @@ synonymtypedef: equivalent_name "" synonymtypedef: genbank_common_name "" synonymtypedef: Gene-based "" synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" +synonymtypedef: human "" synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" synonymtypedef: in_part "" synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" @@ -104,6 +105,14 @@ synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for desig synonymtypedef: systematic_synonym "" synonymtypedef: vertebrate "" default-namespace: uberon +idspace: dc http://purl.org/dc/elements/1.1/ +idspace: doap http://usefulinc.com/ns/doap# +idspace: foaf http://xmlns.com/foaf/0.1/ +idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# +idspace: sssom https://w3id.org/sssom/ +idspace: swrl http://www.w3.org/2003/11/swrl# +idspace: swrlb http://www.w3.org/2003/11/swrlb# +idspace: terms http://purl.org/dc/terms/ treat-xrefs-as-equivalent: AEO treat-xrefs-as-equivalent: BILA treat-xrefs-as-equivalent: BSPO @@ -435,12 +444,203 @@ name: immaterial entity is_a: BFO:0000004 ! independent continuant property_value: editor_note "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10" xsd:string +[Term] +id: BSPO:0000000 +name: left side +namespace: spatial +def: "The side of an organism that is left of the sagittal plane." [BSPO:cjm] +synonym: "left" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: left_of BSPO:0000007 ! right side +relationship: starts_axis BSPO:0000017 ! left-right axis + +[Term] +id: BSPO:0000007 +name: right side +namespace: spatial +def: "The side of an organism that is right of the sagittal plane." [BSPO:cjm, BSPO:wd] +synonym: "right" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: finishes_axis BSPO:0000017 ! left-right axis + +[Term] +id: BSPO:0000010 +name: anatomical axis +namespace: spatial +def: "A straight line through space, intersecting an anatomical entity." [BSPO:cjm] +comment: Axis directions are defined in terms of axes. +xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG +is_a: CARO:0000008 ! anatomical line +relationship: passes_through CARO:0000000 ! anatomical entity + +[Term] +id: BSPO:0000013 +name: anterior-posterior axis +namespace: spatial +def: "An axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] +comment: In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM] +synonym: "A-P axis" EXACT [] +synonym: "anteroposterior axis" EXACT [] +synonym: "AP axis" EXACT [] +synonym: "cephalocaudal axis" NARROW [http://en.wikipedia.org/wiki/Anatomical_terms_of_location] +synonym: "craniocaudal axis" NARROW vertebrate [] +synonym: "longitudinal axis" RELATED [] +synonym: "rostral/caudal" NARROW vertebrate [] +synonym: "rostrocaudal axis" NARROW vertebrate [] +is_a: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0000010 ! anatomical axis +intersection_of: orthogonal_to BSPO:0000018 ! transverse plane +relationship: approximately_perpendicular_to BSPO:0000016 ! dorsal-ventral axis +relationship: orthogonal_to BSPO:0000018 ! transverse plane + +[Term] +id: BSPO:0000016 +name: dorsal-ventral axis +namespace: spatial +def: "An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body." [BSPO:curators] +synonym: "anterior-posterior axis" NARROW human [] +synonym: "D-V axis" EXACT [] +synonym: "dorsoventral axis" EXACT [] +synonym: "DV axis" EXACT [] +is_a: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0000010 ! anatomical axis +intersection_of: orthogonal_to BSPO:0000019 ! horizontal plane +relationship: orthogonal_to BSPO:0000019 ! horizontal plane + +[Term] +id: BSPO:0000017 +name: left-right axis +namespace: spatial +def: "An axis that bisects an organism from left to right sides of body, through a sagittal plane." [BSPO:cjm] +synonym: "dextro-sinister axis" EXACT [] +synonym: "L-R axis" EXACT [] +synonym: "left to right axis" EXACT [] +synonym: "LR axis" EXACT [] +synonym: "R-L axis" EXACT [] +synonym: "right to left axis" EXACT [] +synonym: "right-left axis" EXACT [] +synonym: "RL axis" EXACT [] +is_a: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0000010 ! anatomical axis +intersection_of: orthogonal_to BSPO:0000417 ! sagittal plane +relationship: orthogonal_to BSPO:0000417 ! sagittal plane + +[Term] +id: BSPO:0000018 +name: transverse plane +namespace: spatial +def: "Anatomical plane that divides body into anterior and posterior parts." [BSPO:mah] +synonym: "axial plane" EXACT [] +synonym: "axial section" EXACT [] +synonym: "cross-section" RELATED [] +synonym: "transverse section" EXACT [] +xref: FMA:12247 +is_a: BSPO:0000400 ! anatomical plane + +[Term] +id: BSPO:0000019 +name: horizontal plane +namespace: spatial +def: "Anatomical plane that divides bilateral body into dorsal and ventral parts." [BSPO:mah] +synonym: "coronal section" RELATED [] +synonym: "frontal plane" EXACT [] +synonym: "frontal section" RELATED [] +synonym: "horizontal anatomical plane" EXACT [FMA:52810] +synonym: "horizontal section" EXACT [] +xref: FMA:52810 +is_a: BSPO:0000400 ! anatomical plane + +[Term] +id: BSPO:0000054 +name: anatomical side +namespace: spatial +def: "An anatomical region bounded by a plane perpendicular to an axis through the middle." [BSPO:cjm] +xref: FBql:00005841 +is_a: BSPO:0000070 ! anatomical region + +[Term] +id: BSPO:0000070 +name: anatomical region +namespace: spatial +def: "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." [BSPO:cjm] +comment: to be merged into CARO +xref: FBql:00005841 +is_a: CARO:0000003 ! anatomical structure + +[Term] +id: BSPO:0000400 +name: anatomical plane +namespace: spatial +def: "A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions." [BSPO:cjm] +comment: These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical. +synonym: "anatomical cross-section" EXACT [] +synonym: "anatomical section" EXACT [] +synonym: "cross-section" RELATED [] +synonym: "plane" EXACT [] +synonym: "section" EXACT [] +xref: FMA:242982 +is_a: CARO:0000010 ! anatomical boundary + +[Term] +id: BSPO:0000417 +name: sagittal plane +namespace: spatial +def: "Anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size." [BSPO:cjm, BSPO:DOS, BSPO:mah] +synonym: "left/right plane" EXACT [] +synonym: "median plane" EXACT [] +synonym: "sagittal section" EXACT [] +xref: FMA:11361 +is_a: BSPO:0000010 ! anatomical axis +is_a: BSPO:0000400 ! anatomical plane +intersection_of: BSPO:0000400 ! anatomical plane +intersection_of: BSPO:0001102 BSPO:0000013 ! parallel to anterior-posterior axis +intersection_of: BSPO:0001102 BSPO:0000016 ! parallel to dorsal-ventral axis +intersection_of: orthogonal_to BSPO:0000017 ! left-right axis +relationship: BSPO:0001102 BSPO:0000013 ! parallel to anterior-posterior axis +relationship: BSPO:0001102 BSPO:0000016 ! parallel to dorsal-ventral axis +relationship: orthogonal_to BSPO:0000017 ! left-right axis + [Term] id: CARO:0000000 name: anatomical entity namespace: spatial def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH] +[Term] +id: CARO:0000003 +name: anatomical structure +namespace: spatial +def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CC:DOS] +is_a: CARO:0000006 ! material anatomical entity + +[Term] +id: CARO:0000006 +name: material anatomical entity +namespace: spatial +def: "An anatomical entity that has mass." [CC:DOS] +is_a: CARO:0000000 ! anatomical entity + +[Term] +id: CARO:0000007 +name: immaterial anatomical entity +namespace: spatial +def: "An anatomical entity that has no mass." [CC:DOS] +is_a: CARO:0000000 ! anatomical entity + +[Term] +id: CARO:0000008 +name: anatomical line +namespace: spatial +def: "A one dimensional, immaterial anatomical entity." [CC:DOS] +is_a: CARO:0000007 ! immaterial anatomical entity + +[Term] +id: CARO:0000010 +name: anatomical boundary +namespace: spatial +def: "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." [CC:DOS] +is_a: CARO:0000007 ! immaterial anatomical entity + [Term] id: CHEBI:10545 name: electron @@ -4039,8 +4239,8 @@ namespace: chebi_ontology subset: 3_STAR synonym: ">C=O" RELATED [IUPAC] synonym: "carbonyl" EXACT IUPAC_NAME [IUPAC] -synonym: "carbonyl group" EXACT [UniProt] synonym: "carbonyl group" EXACT [ChEBI] +synonym: "carbonyl group" EXACT [UniProt] is_a: CHEBI:51422 ! organodiyl group [Term] @@ -14360,7 +14560,6 @@ comment: The definition of cell is intended to represent all cells, and thus a c subset: cellxgene_subset subset: ubprop:upper_level xref: CALOHA:TS-2035 -xref: FBbt:00007002 xref: FMA:68646 xref: GO:0005623 xref: KUPO:0000002 @@ -14391,6 +14590,7 @@ relationship: develops_from CL:0000333 ! migratory neural crest cell [Term] id: CL:0000006 name: neuronal receptor cell +def: "Any sensory receptor cell that is a(n) neuron and is capable of some detection of stimulus involved in sensory perception." [FBC:Autogenerated] subset: cellxgene_subset synonym: "neuronal receptor cell (sensu Animalia)" EXACT [] is_a: CL:0000101 ! sensory neuron @@ -14423,7 +14623,6 @@ id: CL:0000014 name: germ line stem cell def: "A stem cell that is the precursor of gametes." [doi:10.1016/j.stem.2012.05.016] synonym: "germline stem cell" EXACT [] -xref: FBbt:00004861 is_a: CL:0000034 {is_inferred="true"} ! stem cell is_a: CL:0000039 ! germ line cell intersection_of: CL:0000039 ! germ line cell @@ -14450,7 +14649,6 @@ def: "A male germ cell that develops from spermatogonia. The euploid primary spe xref: BTO:0001275 xref: CALOHA:TS-0951 xref: EMAPA:31484 -xref: FBbt:00004936 xref: FMA:84049 xref: WBbt:0006799 is_a: CL:0000015 ! male germ cell @@ -14467,7 +14665,6 @@ synonym: "nematoblast" EXACT [] xref: BTO:0001274 xref: CALOHA:TS-0950 xref: EMAPA:31486 -xref: FBbt:00004942 xref: FMA:72294 xref: WBbt:0006800 is_a: CL:0000015 ! male germ cell @@ -14494,7 +14691,6 @@ synonym: "spermatozoon" EXACT [] xref: BTO:0001277 xref: BTO:0002046 xref: CALOHA:TS-0949 -xref: FBbt:00004954 xref: FMA:67338 xref: WBbt:0006798 is_a: CL:0000408 {is_inferred="true"} ! male gamete @@ -14508,8 +14704,6 @@ synonym: "spermatogonial cell" EXACT [] xref: BTO:0000958 xref: CALOHA:TS-2193 xref: EMAPA:31482 -xref: FBbt:00004934 -xref: FBbt:00004935 xref: FMA:72291 is_a: CL:0000015 ! male germ cell intersection_of: CL:0000015 ! male germ cell @@ -14535,7 +14729,6 @@ relationship: capable_of GO:0048477 ! oogenesis id: CL:0000022 name: female germ line stem cell def: "A stem cell that is the precursor of female gametes." [doi:10.1016/j.stem.2012.05.016] -xref: FBbt:00004873 is_a: CL:0000014 {is_inferred="true"} ! germ line stem cell is_a: CL:0000021 {is_inferred="true"} ! female germ cell intersection_of: CL:0000021 ! female germ cell @@ -14550,7 +14743,6 @@ subset: cellxgene_subset synonym: "oogonium" RELATED [] xref: BTO:0000964 xref: CALOHA:TS-0711 -xref: FBbt:00004886 xref: FMA:18644 xref: MESH:D009865 xref: WBbt:0006797 @@ -14580,7 +14772,6 @@ synonym: "ovum" EXACT [] xref: BTO:0000369 xref: BTO:0003801 xref: CALOHA:TS-2191 -xref: FBbt:00057012 xref: FMA:67343 xref: MESH:D010063 is_a: CL:0000675 {is_inferred="true"} ! female gamete @@ -14602,6 +14793,7 @@ relationship: develops_from CL:0000333 ! migratory neural crest cell [Term] id: CL:0000029 name: neural crest derived neuron +def: "Any neuron that develops from some migratory neural crest cell." [FBC:Autogenerated] synonym: "neuron neural crest derived" EXACT [] is_a: CL:0000540 {is_inferred="true"} ! neuron is_a: UBERON:0010313 ! neural crest-derived structure @@ -14763,7 +14955,6 @@ xref: CALOHA:TS-1195 xref: FMA:83553 is_a: CL:0000763 ! myeloid cell is_a: CL:0002194 {is_inferred="true"} ! monopoietic cell -is_a: PR:000050567 is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002194 ! monopoietic cell intersection_of: capable_of GO:0030224 ! monocyte differentiation @@ -14891,7 +15082,6 @@ name: myoblast def: "A cell that is commited to differentiating into a muscle cell. Embryonic myoblasts develop from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes. Myoblasts also occur as transient populations of cells in muscles undergoing repair." [GOC:tfm, MESH:D032446, PMID:21849021] xref: BTO:0000222 xref: CALOHA:TS-0650 -xref: FBbt:00005083 xref: FMA:70335 xref: VHOG:0001529 is_a: CL:0000680 ! muscle precursor cell @@ -14985,7 +15175,6 @@ subset: cellxgene_subset xref: VHOG:0001532 xref: XAO:0000031 is_a: CL:0000000 ! cell -is_a: PR:000050567 intersection_of: CL:0000000 ! cell intersection_of: has_part GO:0005929 ! cilium relationship: has_part GO:0005929 ! cilium @@ -15014,7 +15203,6 @@ synonym: "epitheliocyte" EXACT [] xref: BTO:0000414 xref: CALOHA:TS-2026 xref: CARO:0000077 -xref: FBbt:00000124 xref: FMA:66768 xref: WBbt:0003672 is_a: CL:0000000 ! cell @@ -15196,7 +15384,6 @@ xref: MESH:D010010 is_a: CL:0000518 ! phagocyte (sensu Vertebrata) is_a: CL:0000766 {is_inferred="true"} ! myeloid leukocyte is_a: CL:0001035 {is_inferred="true"} ! bone cell -is_a: PR:000050567 is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: capable_of GO:0045453 ! bone resorption @@ -15234,7 +15421,6 @@ xref: CALOHA:TS-0422 xref: FMA:62854 is_a: CL:0000081 ! blood cell is_a: CL:0000766 {is_inferred="true"} ! myeloid leukocyte -is_a: PR:000050567 intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: capable_of GO:0008015 ! blood circulation intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -15284,7 +15470,6 @@ def: "Most generally any neuron which is not motor or sensory. Interneurons may subset: cellxgene_subset subset: human_reference_atlas xref: BTO:0003811 -xref: FBbt:00005125 xref: FMA:67313 xref: WBbt:0005113 is_a: CL:0000540 ! neuron @@ -15298,7 +15483,6 @@ subset: cellxgene_subset subset: human_reference_atlas synonym: "motoneuron" EXACT [] xref: BTO:0000312 -xref: FBbt:00005123 xref: FMA:83617 xref: WBbt:0005409 is_a: CL:0000527 ! efferent neuron @@ -15308,8 +15492,8 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: CL:0000101 name: sensory neuron def: "Any neuron having a sensory function; an afferent neuron conveying sensory impulses." [ISBN:0721662544] +subset: human_reference_atlas xref: BTO:0001037 -xref: FBbt:00005124 xref: FMA:84649 xref: MESH:D011984 xref: WBbt:0005759 @@ -15317,6 +15501,7 @@ is_a: CL:0000526 ! afferent neuron intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0050906 ! detection of stimulus involved in sensory perception relationship: capable_of GO:0050906 ! detection of stimulus involved in sensory perception +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000103 @@ -15357,7 +15542,6 @@ id: CL:0000108 name: cholinergic neuron def: "A neuron that uses acetylcholine as a vesicular neurotransmitter." [GOC:tfm] xref: BTO:0004902 -xref: FBbt:00007173 xref: FMA:84796 xref: MESH:D059329 xref: WBbt:0006840 @@ -15494,13 +15678,14 @@ def: "A non-neuronal cell of the nervous system. They not only provide physical comment: Not all glial cells develop from glioblasts, with microglia developing from the mesoderm instead. See https://github.com/obophenotype/cell-ontology/issues/1571 subset: cellxgene_subset subset: general_cell_types_upper_slim +subset: human_reference_atlas synonym: "neuroglia" RELATED [] synonym: "neuroglial cell" EXACT [] xref: BTO:0002606 xref: CALOHA:TS-0415 -xref: FBbt:00005144 xref: FMA:54536 is_a: CL:0000095 ! neuron associated cell +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000126 @@ -15746,6 +15931,7 @@ is_a: CL:0000447 ! carbohydrate secreting cell [Term] id: CL:0000154 name: protein secreting cell +def: "Any secretory cell that is capable of some protein secretion." [FBC:Autogenerated] is_a: CL:0000151 ! secretory cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0009306 ! protein secretion @@ -15853,7 +16039,6 @@ subset: human_reference_atlas synonym: "neurosecretory cell" RELATED [] synonym: "neurosecretory neuron" RELATED [] xref: BTO:0002691 -xref: FBbt:00005130 xref: FMA:83810 is_a: CL:0000163 ! endocrine cell is_a: CL:0000527 ! efferent neuron @@ -15877,6 +16062,7 @@ is_a: CL:0000568 ! amine precursor uptake and decarboxylation cell [Term] id: CL:0000167 name: peptide hormone secreting cell +def: "Any secretory cell that is capable of some peptide hormone secretion." [FBC:Autogenerated] is_a: CL:0000151 ! secretory cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0030072 ! peptide hormone secretion @@ -15885,6 +16071,7 @@ relationship: capable_of GO:0030072 ! peptide hormone secretion [Term] id: CL:0000168 name: insulin secreting cell +def: "Any secretory cell that is capable of some insulin secretion." [FBC:Autogenerated] xref: BTO:0000783 is_a: CL:0000154 ! protein secreting cell is_a: CL:0000167 ! peptide hormone secreting cell @@ -15958,6 +16145,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000172 name: somatostatin secreting cell +def: "Any secretory cell that is capable of some somatostatin secretion." [FBC:Autogenerated] is_a: CL:0000167 ! peptide hormone secreting cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0070253 ! somatostatin secretion @@ -15989,6 +16177,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000174 name: steroid hormone secreting cell +def: "Any secretory cell that is capable of some steroid hormone secretion." [FBC:Autogenerated] is_a: CL:0000151 ! secretory cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0035929 ! steroid hormone secretion @@ -16012,6 +16201,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000177 name: testosterone secreting cell +def: "Any secretory cell that is capable of some testosterone secretion." [FBC:Autogenerated] is_a: CL:0000151 ! secretory cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0035936 ! testosterone secretion @@ -16038,6 +16228,7 @@ relationship: part_of UBERON:0005212 ! Leydig cell region of testis [Term] id: CL:0000179 name: progesterone secreting cell +def: "Any secretory cell that is capable of some progesterone secretion." [FBC:Autogenerated] is_a: CL:0000174 ! steroid hormone secreting cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0042701 ! progesterone secretion @@ -16081,7 +16272,6 @@ xref: CALOHA:TS-2379 xref: FMA:67799 is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0000183 ! contractile cell -is_a: CL:0002078 ! meso-epithelial cell [Term] id: CL:0000187 @@ -16093,7 +16283,6 @@ synonym: "myocyte" EXACT [] xref: BTO:0000888 xref: BTO:0000902 xref: CALOHA:TS-2032 -xref: FBbt:00005074 xref: FMA:67328 xref: WBbt:0003675 is_a: CL:0000183 ! contractile cell @@ -16192,6 +16381,7 @@ relationship: capable_of GO:0050974 ! detection of mechanical stimulus involved [Term] id: CL:0000200 name: touch receptor cell +def: "Any neuron that is capable of some detection of mechanical stimulus involved in sensory perception of touch." [FBC:Autogenerated] is_a: CL:0000199 ! mechanoreceptor cell intersection_of: CL:0000540 ! neuron intersection_of: capable_of GO:0050976 ! detection of mechanical stimulus involved in sensory perception of touch @@ -16218,6 +16408,7 @@ relationship: capable_of GO:0050907 ! detection of chemical stimulus involved in [Term] id: CL:0000207 name: olfactory receptor cell +def: "Any neuron that is capable of some detection of chemical stimulus involved in sensory perception of smell." [FBC:Autogenerated] synonym: "odorant receptor cell" EXACT [] synonym: "olfactory receptor neuron" EXACT [] synonym: "olfactory sensory neuron" EXACT [] @@ -16388,6 +16579,7 @@ relationship: has_characteristic PATO:0001407 ! mononucleate [Term] id: CL:0000227 name: binucleate cell +def: "Any cell that has characteristic some binucleate." [FBC:Autogenerated] is_a: CL:0000228 ! multinucleate cell intersection_of: CL:0000000 ! cell intersection_of: has_characteristic PATO:0001406 ! binucleate @@ -16573,6 +16765,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000255 name: eukaryotic cell +def: "Any cell that only exists in Eukaryota." [FBC:Autogenerated] subset: cellxgene_subset xref: MESH:D005057 is_a: CL:0000000 ! cell @@ -16583,6 +16776,7 @@ relationship: only_in_taxon NCBITaxon:2759 ! Eukaryota [Term] id: CL:0000257 name: Eumycetozoan cell +def: "Any cell that only exists in Eumycetozoa." [FBC:Autogenerated] is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: only_in_taxon NCBITaxon:142796 ! Eumycetozoa @@ -16591,6 +16785,7 @@ relationship: only_in_taxon NCBITaxon:142796 ! Eumycetozoa [Term] id: CL:0000287 name: eye photoreceptor cell +def: "Any photoreceptor cell that is part of some eye." [FBC:Autogenerated] subset: cellxgene_subset subset: eye_upper_slim subset: human_reference_atlas @@ -16624,7 +16819,6 @@ def: "A mature sexual reproductive cell having a single set of unpaired chromoso synonym: "haploid germ cell" RELATED [] synonym: "haploid nucleated cell" EXACT [] xref: CALOHA:TS-0395 -xref: FBbt:00005412 xref: FMA:18649 is_a: CL:0000413 ! haploid cell is_a: CL:0000586 {is_inferred="true"} ! germ cell @@ -16712,6 +16906,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000319 name: mucus secreting cell +def: "Any secretory cell that is capable of some mucus secretion." [FBC:Autogenerated] subset: cellxgene_subset synonym: "mucous cell" EXACT [] xref: BTO:0003689 @@ -16748,6 +16943,7 @@ is_a: CL:0000499 ! stromal cell [Term] id: CL:0000329 name: oxygen accumulating cell +def: "Any cell that is capable of some oxygen transport." [FBC:Autogenerated] is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell intersection_of: capable_of GO:0015671 ! oxygen transport @@ -16833,6 +17029,7 @@ relationship: part_of UBERON:0001776 ! optic choroid [Term] id: CL:0000349 name: extraembryonic cell +def: "Any cell that is part of some extraembryonic structure." [FBC:Autogenerated] subset: general_cell_types_upper_slim is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell @@ -16842,6 +17039,7 @@ relationship: part_of UBERON:0000478 ! extraembryonic structure [Term] id: CL:0000350 name: amnioserosal cell +def: "Any extraembryonic cell that is part of some amnioserosa." [FBC:Autogenerated] is_a: CL:0000349 ! extraembryonic cell intersection_of: CL:0000349 ! extraembryonic cell intersection_of: part_of UBERON:0010302 ! amnioserosa @@ -16919,6 +17117,13 @@ intersection_of: part_of UBERON:0002049 ! vasculature relationship: part_of UBERON:0002049 ! vasculature relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: CL:0000361 +name: gastrula cell +def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [MESH:D005775] +is_a: CL:0000007 ! early embryonic cell (metazoa) +relationship: part_of UBERON:0004734 ! gastrula + [Term] id: CL:0000362 name: epidermal cell @@ -16950,6 +17155,14 @@ intersection_of: CL:0010017 ! zygote intersection_of: only_in_taxon NCBITaxon:33208 ! Metazoa relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +[Term] +id: CL:0000373 +name: histoblast +def: "A progenitor cell found in the larval epidermis of insects and that gives rise to the adult abdominal epidermis." [doi:10.1016/j.cub.2022.01.045] +is_a: CL:0000255 ! eukaryotic cell +is_a: CL:0011026 ! progenitor cell +relationship: only_in_taxon NCBITaxon:50557 ! Insecta + [Term] id: CL:0000377 name: tracheoblast @@ -16959,7 +17172,6 @@ is_a: CL:0000069 ! branched duct epithelial cell id: CL:0000385 name: prohemocyte (sensu Nematoda and Protostomia) def: "A precursor of mature hemocytes." [doi:10.1016/B978-012369493-5.50008-0] -xref: FBbt:00005062 is_a: CL:0008001 ! hematopoietic precursor cell relationship: never_in_taxon NCBITaxon:33511 ! Deuterostomia @@ -16972,7 +17184,6 @@ is_a: CL:0000630 ! supporting cell id: CL:0000387 name: hemocyte (sensu Arthropoda) def: "A blood cell of the circulatory system of arthropods." [doi:10.1016/B978-012369493-5.50008-0] -xref: FBbt:00005063 is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000390 ! blood cell (sensu Nematoda and Protostomia) relationship: develops_from CL:0000385 ! prohemocyte (sensu Nematoda and Protostomia) @@ -17006,6 +17217,7 @@ is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000397 name: ganglion interneuron +def: "Any interneuron that has its soma located in some ganglion." [FBC:Autogenerated] subset: cellxgene_subset is_a: CL:0000099 {is_inferred="true"} ! interneuron intersection_of: CL:0000099 ! interneuron @@ -17034,6 +17246,7 @@ is_a: CL:0000211 ! electrically active cell [Term] id: CL:0000408 name: male gamete +def: "Any male germ cell that has characteristic some haploid and is capable of some fertilization." [FBC:Autogenerated] xref: BTO:0001277 xref: CALOHA:TS-0949 is_a: CL:0000015 {is_inferred="true"} ! male germ cell @@ -17074,6 +17287,24 @@ def: "A cell involved in the elimination of metabolic and foreign toxins, and in xref: WBbt:0005812 is_a: CL:0000151 ! secretory cell +[Term] +id: CL:0000430 +name: xanthophore cell +def: "A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red." [SANBI:mhl] +synonym: "xanthophore" RELATED [] +is_a: CL:0000147 ! pigment cell +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from CL:0005002 ! xanthoblast + +[Term] +id: CL:0000431 +name: iridophore +def: "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platelets or iridisomes. The color-generating components produce a silver, gold, or iridescent color." [SANBI:mhl] +synonym: "guanophore" RELATED [] +is_a: CL:0000147 ! pigment cell +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from CL:0005001 ! iridoblast + [Term] id: CL:0000432 name: reticular cell @@ -17122,7 +17353,6 @@ id: CL:0000441 name: follicle stem cell (sensu Arthropoda) def: "A stem cell that gives rise to the follicle cells that surround the oocyte in female arthropods." [doi:10.1016/B978-012369493-5.50005-5, doi:10.1038/s41467-020-19361-0, doi:10.1242/dev.121.11.3797] synonym: "somatic stem cell" BROAD [doi:10.1016/j.devcel.2005.08.012] -xref: FBbt:00004903 is_a: CL:0000036 ! epithelial fate stem cell is_a: CL:0000255 ! eukaryotic cell relationship: only_in_taxon NCBITaxon:6656 {IAO:0000233="https://github.com/obophenotype/cell-ontology/issues/1943"} ! Arthropoda @@ -17130,6 +17360,7 @@ relationship: only_in_taxon NCBITaxon:6656 {IAO:0000233="https://github.com/obop [Term] id: CL:0000443 name: calcitonin secreting cell +def: "Any secretory cell that is capable of some calcitonin secretion." [FBC:Autogenerated] is_a: CL:0000167 ! peptide hormone secreting cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0036161 ! calcitonin secretion @@ -17205,7 +17436,6 @@ xref: FMA:83036 xref: MESH:D003713 is_a: CL:0000113 ! mononuclear phagocyte is_a: CL:0000145 ! professional antigen presenting cell -is_a: PR:000050567 intersection_of: CL:0000738 ! leukocyte intersection_of: capable_of GO:0001816 ! cytokine production intersection_of: capable_of GO:0002504 ! antigen processing and presentation of peptide or polysaccharide antigen via MHC class II @@ -17268,6 +17498,7 @@ relationship: capable_of GO:0048242 ! epinephrine secretion [Term] id: CL:0000456 name: mineralocorticoid secreting cell +def: "Any secretory cell that is capable of some mineralocorticoid secretion." [FBC:Autogenerated] is_a: CL:0000174 ! steroid hormone secreting cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0035931 ! mineralocorticoid secretion @@ -17304,6 +17535,7 @@ relationship: capable_of GO:0048243 ! norepinephrine secretion [Term] id: CL:0000460 name: glucocorticoid secreting cell +def: "Any secretory cell that is capable of some glucocorticoid secretion." [FBC:Autogenerated] is_a: CL:0000174 ! steroid hormone secreting cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0035933 ! glucocorticoid secretion @@ -17335,7 +17567,6 @@ name: follicle cell of egg chamber def: "A somatic epithelial cell of the insect egg chamber." [] synonym: "follicle cell" BROAD [] synonym: "ovarian follicle cell" BROAD [] -xref: FBbt:00004904 is_a: CL:0000255 ! eukaryotic cell is_a: CL:0000500 ! follicular epithelial cell is_a: CL:2000064 ! ovarian surface epithelial cell @@ -17346,7 +17577,6 @@ relationship: only_in_taxon NCBITaxon:50557 {source="https://github.com/obopheno id: CL:0000482 name: juvenile hormone secreting cell def: "An endocrine cell that secretes juvenile hormone." [GO:tfm] -xref: FBbt:00058020 is_a: CL:0000151 ! secretory cell intersection_of: CL:0000151 ! secretory cell intersection_of: capable_of GO:0045443 ! juvenile hormone secretion @@ -17522,6 +17752,7 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: CL:0000521 name: fungal cell +def: "Any cell that only exists in Fungi." [FBC:Autogenerated] is_a: CL:0000255 ! eukaryotic cell intersection_of: CL:0000000 ! cell intersection_of: only_in_taxon NCBITaxon:4751 ! Fungi @@ -17575,7 +17806,6 @@ subset: human_reference_atlas synonym: "nerve cell" EXACT [] xref: BTO:0000938 xref: CALOHA:TS-0683 -xref: FBbt:00005106 xref: FMA:54527 xref: VHOG:0001483 xref: WBbt:0003679 @@ -17612,7 +17842,6 @@ xref: FMA:62863 xref: MESH:D008214 xref: VHOG:0001535 is_a: CL:0000842 ! mononuclear cell -is_a: PR:000050567 intersection_of: CL:0000738 ! leukocyte intersection_of: has_characteristic PATO:0001407 ! mononucleate intersection_of: has_characteristic PATO:0040072 ! high nuclear/cytoplasmic ratio @@ -17637,7 +17866,6 @@ synonym: "rubriblast" EXACT [ISBN:0721601464] xref: FMA:83518 is_a: CL:0000764 {is_inferred="true"} ! erythroid lineage cell is_a: CL:0002242 ! nucleate cell -is_a: PR:000050567 intersection_of: CL:0000764 ! erythroid lineage cell intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule intersection_of: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -17683,7 +17911,6 @@ synonym: "early normoblast" EXACT [ISBN:0721601464] synonym: "prorubricyte" EXACT [ISBN:0721601464] xref: FMA:83505 is_a: CL:0000765 {is_inferred="true"} ! erythroblast -is_a: PR:000050567 intersection_of: CL:0000765 ! erythroblast intersection_of: has_part CL:0017503 ! basophilic cytoplasm intersection_of: has_part GO:0000792 ! heterochromatin @@ -17704,7 +17931,6 @@ synonym: "polychromatophilic normoblast" EXACT [ISBN:0721601464] synonym: "rubricyte" EXACT [ISBN:0721601464] xref: FMA:83506 is_a: CL:0000765 {is_inferred="true"} ! erythroblast -is_a: PR:000050567 intersection_of: CL:0000765 ! erythroblast intersection_of: has_part CL:0017504 ! polychromatophilic cytoplasm intersection_of: has_part GO:0000792 ! heterochromatin @@ -17831,7 +18057,6 @@ is_a: CL:0000763 ! myeloid cell is_a: CL:0001012 ! CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor is_a: CL:0011026 ! progenitor cell is_a: CL:1001610 ! bone marrow hematopoietic cell -is_a: PR:000050567 intersection_of: CL:0002032 ! hematopoietic oligopotent progenitor cell intersection_of: capable_of GO:0030225 ! macrophage differentiation intersection_of: capable_of GO:0030851 ! granulocyte differentiation @@ -17861,7 +18086,6 @@ xref: BTO:0001173 xref: CALOHA:TS-0864 xref: MESH:D012156 is_a: CL:0000764 {is_inferred="true"} ! erythroid lineage cell -is_a: PR:000050567 intersection_of: CL:0000764 ! erythroid lineage cell intersection_of: capable_of GO:0071971 ! extracellular exosome assembly intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -17902,7 +18126,6 @@ xref: BTO:0004657 xref: FMA:83551 is_a: CL:0000763 ! myeloid cell is_a: CL:0002194 {is_inferred="true"} ! monopoietic cell -is_a: PR:000050567 is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002194 ! monopoietic cell intersection_of: capable_of GO:0030224 ! monocyte differentiation @@ -17958,7 +18181,6 @@ synonym: "angioblast" EXACT [] synonym: "chondroplast" EXACT [] is_a: CL:0000134 {is_inferred="true"} ! mesenchymal stem cell is_a: CL:0011026 ! progenitor cell -is_a: PR:000050567 intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: has_plasma_membrane_part PR:000001444 ! cadherin-5 intersection_of: has_plasma_membrane_part PR:000002112 ! vascular endothelial growth factor receptor 2 @@ -18003,7 +18225,6 @@ xref: SCTID:176770005 is_a: CL:0000443 {is_inferred="true"} ! calcitonin secreting cell is_a: CL:0000458 ! serotonin secreting cell is_a: CL:0000710 {is_inferred="true"} ! neurecto-epithelial cell -is_a: PR:000050567 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: CL:0000710 ! neurecto-epithelial cell @@ -18032,6 +18253,14 @@ is_a: CL:0010009 ! camera-type eye photoreceptor cell relationship: develops_from CL:0002672 ! retinal progenitor cell relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: CL:0000574 +name: erythrophore +def: "A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance." [SANBI:mhl] +is_a: CL:0000147 ! pigment cell +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from CL:0005004 ! pigment erythroblast + [Term] id: CL:0000575 name: corneal epithelial cell @@ -18170,7 +18399,6 @@ name: GABAergic neuron def: "A neuron that uses GABA as a vesicular neurotransmitter" [GOC:tfm] subset: cellxgene_subset synonym: "GABA-ergic neuron" EXACT [] -xref: FBbt:00007228 xref: FMA:84788 xref: MESH:D059330 xref: WBbt:0005190 @@ -18193,6 +18421,40 @@ is_a: CL:0000150 ! glandular epithelial cell is_a: CL:0000154 ! protein secreting cell relationship: part_of UBERON:0009842 ! glandular acinus +[Term] +id: CL:0000623 +name: natural killer cell +def: "A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [GOC:add, ISBN:0781735149, PMID:15771571] +subset: cellxgene_subset +subset: general_cell_types_upper_slim +subset: human_reference_atlas +synonym: "large granular lymphocyte" BROAD [] +synonym: "NK cell" EXACT [] +synonym: "null cell" BROAD [] +xref: BTO:0000914 +xref: BTO:0004716 +xref: CALOHA:TS-0664 +xref: FMA:63147 +xref: FMA:83601 +xref: MESH:D007694 +xref: VHOG:0001697 +is_a: CL:0001067 ! group 1 innate lymphoid cell +intersection_of: CL:0001067 ! group 1 innate lymphoid cell +intersection_of: capable_of GO:0002228 ! natural killer cell mediated immunity +intersection_of: capable_of GO:0050776 ! regulation of immune response +intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule +intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon +intersection_of: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 +intersection_of: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule +relationship: capable_of GO:0002228 ! natural killer cell mediated immunity +relationship: capable_of GO:0050776 ! regulation of immune response +relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule +relationship: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon +relationship: CL:4030046 PR:000001289 ! lacks_plasma_membrane_part membrane-spanning 4-domains subfamily A member 1 +relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule +relationship: develops_from CL:0000825 ! pro-NK cell +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens + [Term] id: CL:0000626 name: olfactory granule cell @@ -18245,7 +18507,6 @@ xref: CALOHA:TS-0452 xref: FMA:67763 is_a: CL:0000057 ! fibroblast is_a: CL:0000327 ! extracellular matrix secreting cell -is_a: PR:000050567 is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0002320 ! connective tissue cell intersection_of: has_plasma_membrane_part PR:000007939 ! glial fibrillary acidic protein @@ -18447,7 +18708,6 @@ name: secondary spermatocyte def: "One of the two haploid cells into which a primary spermatocyte divides, and which in turn gives origin to spermatids." [GOC:tfm, ISBN:0721662544] xref: BTO:0000709 xref: CALOHA:TS-2195 -xref: FBbt:00004941 xref: FMA:72293 is_a: CL:0000017 ! spermatocyte is_a: CL:0000413 ! haploid cell @@ -18522,7 +18782,6 @@ name: glutamatergic neuron def: "A neuron that is capable of some neurotansmission by glutamate secretion." [] subset: cellxgene_subset subset: human_reference_atlas -xref: FBbt:00100291 xref: WBbt:0006829 is_a: CL:0000151 ! secretory cell is_a: CL:0000540 ! neuron @@ -18556,6 +18815,7 @@ relationship: develops_from CL:0000710 ! neurecto-epithelial cell [Term] id: CL:0000691 name: stellate interneuron +def: "Any interneuron that has characteristic some stellate morphology." [FBC:Autogenerated] subset: BDS_subset is_a: CL:0000099 ! interneuron is_a: CL:0000104 ! multipolar neuron @@ -18581,7 +18841,6 @@ def: "A neuron that releases dopamine as a neurotransmitter." [GOC:dhill] subset: cellxgene_subset synonym: "dopaminergic cell" EXACT [] xref: BTO:0004032 -xref: FBbt:00005131 xref: FMA:84787 xref: MESH:D059290 xref: WBbt:0006746 @@ -18645,6 +18904,7 @@ relationship: develops_from CL:0000133 ! neurectodermal cell [Term] id: CL:0000712 name: stratum granulosum cell +def: "Any epidermal cell that is part of some stratum granulosum of epidermis." [FBC:Autogenerated] is_a: CL:0000362 ! epidermal cell intersection_of: CL:0000362 ! epidermal cell intersection_of: part_of UBERON:0002069 ! stratum granulosum of epidermis @@ -19207,6 +19467,73 @@ relationship: has_plasma_membrane_part GO:0071753 ! IgM immunoglobulin complex relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: CL:0000819 +name: B-1 B cell +def: "A B cell of distinct lineage and surface marker expression. B-1 B cells are thought to be the primary source of natural IgM immunoglobulin, that is, IgM produced in large quantities without prior antigenic stimulation and generally reactive against various microorganisms, as well as the source of T-independent IgA immunoglobulin in the mucosal areas. These cells are CD43-positive." [GO_REF:0000031, GOC:add, GOC:dsd, http://en.wikipedia.org/wiki/B-1_cell, PMID:11861604, PMID:20933013, PMID:21220451] +comment: There are small numbers of B-1 cells found in the lymph nodes and spleen, while larger numbers can be found in the peritoneal and pleural cavities. B-1 B cells are reportedly CD11b-positive, CD20-positive, CD21-positive, CD27-positive, CD44-positive, CD45RB-positive, CD48-positive, CD70-negative, CD150-positive, CD244-negative, CD352-positive, sIgM-positive, and sIgD-low. +subset: cellxgene_subset +synonym: "B-1 B lymphocyte" EXACT [] +synonym: "B-1 B-cell" EXACT [] +synonym: "B-1 B-lymphocyte" EXACT [] +synonym: "B-1 cell" EXACT [] +synonym: "B1 B cell" EXACT [] +synonym: "B1 B lymphocyte" EXACT [] +synonym: "B1 B-cell" EXACT [] +synonym: "B1 B-lymphocyte" EXACT [] +synonym: "B1 cell" EXACT [] +is_a: CL:0000785 {is_inferred="true"} ! mature B cell +intersection_of: CL:0000785 ! mature B cell +intersection_of: capable_of GO:0045087 ! innate immune response +intersection_of: has_high_plasma_membrane_amount GO:0071753 ! IgM immunoglobulin complex +intersection_of: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +intersection_of: has_plasma_membrane_part PR:000001879 ! leukosialin +relationship: capable_of GO:0045087 ! innate immune response +relationship: has_high_plasma_membrane_amount GO:0071753 ! IgM immunoglobulin complex +relationship: has_plasma_membrane_part PR:000001014 ! receptor-type tyrosine-protein phosphatase C isoform CD45RABC +relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +relationship: has_plasma_membrane_part PR:000001879 ! leukosialin + +[Term] +id: CL:0000820 +name: B-1a B cell +def: "A B-1 B cell that has the phenotype CD5-positive." [GOC:add, PMID:11861604] +subset: cellxgene_subset +synonym: "B-1a B lymphocyte" EXACT [] +synonym: "B-1a B-cell" EXACT [] +synonym: "B-1a B-lymphocyte" EXACT [] +synonym: "B1a B cell" EXACT [] +synonym: "B1a B lymphocyte" EXACT [] +synonym: "B1a B-cell" EXACT [] +synonym: "B1a B-lymphocyte" EXACT [] +synonym: "B1a cell" EXACT [] +synonym: "CD5(+) B1 cell" EXACT [] +synonym: "CD5+ B1 cell" EXACT [] +synonym: "CD5-positive B1 cell" EXACT [] +is_a: CL:0000819 {is_inferred="true"} ! B-1 B cell +intersection_of: CL:0000819 ! B-1 B cell +intersection_of: has_plasma_membrane_part PR:000001839 ! T-cell surface glycoprotein CD5 +relationship: has_plasma_membrane_part PR:000001839 ! T-cell surface glycoprotein CD5 + +[Term] +id: CL:0000821 +name: B-1b B cell +def: "A B-1 B cell that has the phenotype CD5-negative, but having other phenotypic attributes of a B-1 B cell." [GOC:add, PMID:11861604] +subset: cellxgene_subset +synonym: "B-1b B lymphocyte" EXACT [] +synonym: "B-1b B-cell" EXACT [] +synonym: "B-1b B-lymphocyte" EXACT [] +synonym: "B1b B cell" EXACT [] +synonym: "B1b B lymphocyte" EXACT [] +synonym: "B1b B-cell" EXACT [] +synonym: "B1b B-lymphocyte" EXACT [] +synonym: "B1b cell" EXACT [] +is_a: CL:0000819 {is_inferred="true"} ! B-1 B cell +intersection_of: CL:0000819 ! B-1 B cell +intersection_of: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 +relationship: CL:4030046 PR:000001839 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD5 + [Term] id: CL:0000822 name: B-2 B cell @@ -19229,6 +19556,48 @@ intersection_of: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-dom relationship: CL:4030046 PR:000001879 ! lacks_plasma_membrane_part leukosialin relationship: has_plasma_membrane_part PR:000001289 ! membrane-spanning 4-domains subfamily A member 1 +[Term] +id: CL:0000823 +name: immature natural killer cell +def: "A natural killer cell that is developmentally immature and expresses natural killer cell receptors (NKR)." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12457618] +comment: In mouse the NKR are Ly49 molecules and in human these cells express KIR molecules. +subset: cellxgene_subset +synonym: "immature NK cell" EXACT [] +synonym: "p-NK" RELATED [PMID:12457618] +is_a: CL:0000623 ! natural killer cell +is_a: CL:0001082 ! immature innate lymphoid cell +intersection_of: CL:0000623 ! natural killer cell +intersection_of: has_characteristic PATO:0001501 ! immature +disjoint_from: CL:0000937 ! pre-natural killer cell +relationship: develops_from CL:0000937 ! pre-natural killer cell +relationship: has_characteristic PATO:0001501 ! immature + +[Term] +id: CL:0000825 +name: pro-NK cell +def: "A lymphoid progenitor cell that is committed to the natural killer cell lineage, expressing CD122 (IL-15) receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules. In human this cell has the phenotype CD34-positive, CD45RA-positive, CD10-positive, CD117-negative, and CD161 negative." [GO_REF:0000031, GOC:add, GOC:pam, PMID:11532393, PMID:12457618, PMID:15032583, PMID:15766674] +comment: Most markers only described for human pro NK cells. +synonym: "natural killer cell progenitor" EXACT [] +synonym: "NKP" EXACT [PMID:12457618, PMID:15032583, PMID:15766674] +synonym: "null cell" RELATED [PMID:11532393] +synonym: "preNK cell" RELATED [PMID:11532393] +synonym: "pro-natural killer cell" EXACT [] +is_a: CL:0000838 {is_inferred="true"} ! lymphoid lineage restricted progenitor cell +intersection_of: CL:0000838 ! lymphoid lineage restricted progenitor cell +intersection_of: CL:4030046 PR:000001874 ! lacks_plasma_membrane_part KLRB1-like protein +intersection_of: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor +intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule +intersection_of: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA +intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +intersection_of: has_plasma_membrane_part PR:000001898 ! neprilysin +relationship: CL:4030046 PR:000001874 ! lacks_plasma_membrane_part KLRB1-like protein +relationship: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor +relationship: develops_from CL:0000051 ! common lymphoid progenitor +relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule +relationship: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA +relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +relationship: has_plasma_membrane_part PR:000001898 ! neprilysin + [Term] id: CL:0000826 name: pro-B cell @@ -19247,7 +19616,6 @@ synonym: "progenitor B-cell" EXACT [] synonym: "progenitor B-lymphocyte" EXACT [] xref: BTO:0003104 is_a: CL:0000838 {is_inferred="true"} ! lymphoid lineage restricted progenitor cell -is_a: PR:000050567 intersection_of: CL:0000838 ! lymphoid lineage restricted progenitor cell intersection_of: has_part PR:000001903 ! paired box protein PAX-5 intersection_of: has_part PR:000006611 ! DNA nucleotidylexotransferase @@ -19311,7 +19679,6 @@ xref: BTO:0000187 xref: FMA:83524 is_a: CL:0000763 ! myeloid cell is_a: CL:0002191 {is_inferred="true"} ! granulocytopoietic cell -is_a: PR:000050567 is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002191 ! granulocytopoietic cell intersection_of: CL:4030045 GO:0042582 ! lacks_part azurophil granule @@ -19337,7 +19704,6 @@ synonym: "MPP" EXACT [] xref: BTO:0000725 xref: CALOHA:TS-0448 is_a: CL:0008001 ! hematopoietic precursor cell -is_a: PR:000050567 intersection_of: CL:0000988 ! hematopoietic cell intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule intersection_of: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -19540,7 +19906,6 @@ def: "A neuron that releases serotonin as a neurotransmitter." [SANBI:mhl] synonym: "5-HT neuron" EXACT [] synonym: "5-hydroxytryptamine neuron" EXACT [] synonym: "serotinergic neuron" RELATED [] -xref: FBbt:00005133 xref: MESH:D059326 xref: WBbt:0006837 is_a: CL:0000458 ! serotonin secreting cell @@ -19611,7 +19976,6 @@ subset: cellxgene_subset subset: human_reference_atlas synonym: "inflammatory monocyte" EXACT [] is_a: CL:0000576 {is_inferred="true"} ! monocyte -is_a: PR:000050567 intersection_of: CL:0000576 ! monocyte intersection_of: capable_of GO:0002548 ! monocyte chemotaxis intersection_of: capable_of GO:0006909 ! phagocytosis @@ -19634,7 +19998,6 @@ id: CL:0000864 name: tissue-resident macrophage def: "A macrophage constitutively resident in a particular tissue under non-inflammatory conditions, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [GO_REF:0000031, GOC:ana, PMID:19770654] subset: cellxgene_subset -subset: human_reference_atlas synonym: "fixed macrophage" EXACT [] synonym: "resting histiocyte" EXACT [] xref: FMA:84642 @@ -19643,7 +20006,6 @@ is_a: CL:0000235 {is_inferred="true"} ! macrophage intersection_of: CL:0000235 ! macrophage intersection_of: part_of UBERON:0000479 ! tissue relationship: part_of UBERON:0000479 ! tissue -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0000878 @@ -19665,7 +20027,6 @@ def: "A border associated macrophage that is adjacent to a small blood vessel of synonym: "pvMΦ" RELATED OMO:0003000 [PMID:37232741] is_a: CL:4033054 ! perivascular cell is_a: CL:4042003 {is_inferred="true"} ! border associated macrophage -is_a: PR:000050567 intersection_of: CL:4042003 ! border associated macrophage intersection_of: has_plasma_membrane_part PR:000001483 ! low affinity immunoglobulin gamma Fc region receptor III intersection_of: has_plasma_membrane_part PR:000001889 ! CD14 molecule @@ -19683,7 +20044,6 @@ def: "An immature myeloid leukocyte of heterogeneous phenotype found particularl comment: Markers: Mouse: CD11b+GR1+CD31+; Human: CD34+ CD33+CD15-CD13+. (According to some reports in humans these cells are iNOS+ARG1+IL13+IFNg+); location: In cancerous tissue; in the blood and lymphoid organs in sepsis. subset: blood_and_immune_upper_slim is_a: CL:0000766 {is_inferred="true"} ! myeloid leukocyte -is_a: PR:000050567 intersection_of: CL:0000766 ! myeloid leukocyte intersection_of: capable_of GO:0050777 ! negative regulation of immune response intersection_of: has_characteristic PATO:0001501 ! immature @@ -19730,7 +20090,6 @@ synonym: "DN1 thymocyte" EXACT [] synonym: "double negative 1" EXACT [] synonym: "preT.DN1.Th" EXACT [] is_a: CL:0000827 {is_inferred="true"} ! pro-T cell -is_a: PR:000050567 is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: CL:0000827 ! pro-T cell intersection_of: CL:4030046 PR:000001004 ! lacks_plasma_membrane_part CD4 molecule @@ -19774,6 +20133,22 @@ relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth fact relationship: has_plasma_membrane_part PR:000002979 ! lymphocyte antigen 6A-2/6E-1 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: CL:0000937 +name: pre-natural killer cell +def: "Cell committed to natural killer cell lineage that has the phenotype CD122-positive, CD34-positive, and CD117-positive. This cell type lacks expression of natural killer receptor proteins." [GO_REF:0000031, GOC:add, GOC:dsd, GOC:pam, GOC:tfm, PMID:16551251, PMID:17100874] +comment: These cells are also reportedly CD7-low, CD10-negative, CD45RA-positive, alpha-4-beta-7 integrin-high. +subset: cellxgene_subset +synonym: "pre-NK cell" EXACT [] +is_a: CL:0000623 ! natural killer cell +intersection_of: CL:0000623 ! natural killer cell +intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule +intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: has_plasma_membrane_part PR:000001003 ! CD34 molecule +relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor + [Term] id: CL:0000941 name: thymic conventional dendritic cell @@ -20274,7 +20649,6 @@ comment: Cell markers are associated with mouse hematopoietic stem cell. Origina synonym: "LSK stem cell" EXACT [] synonym: "Sca1-positive hematopoietic stem cell" EXACT [] is_a: CL:0000037 {is_inferred="true"} ! hematopoietic stem cell -is_a: PR:000050567 intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC intersection_of: CL:4030046 PR:000001084 ! lacks_plasma_membrane_part T-cell surface glycoprotein CD8 alpha chain @@ -20326,7 +20700,6 @@ synonym: "CD10-positive common lymphocyte progenitor" EXACT [] synonym: "CD10-positive common lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor is_a: CL:0000995 ! CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor -is_a: PR:000050567 intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule intersection_of: has_plasma_membrane_part PR:000001015 ! receptor-type tyrosine-protein phosphatase C isoform CD45RA @@ -20347,7 +20720,6 @@ comment: These markers are associated with human cells. Originally described in is_a: CL:0000576 {is_inferred="true"} ! monocyte is_a: CL:0000839 ! myeloid lineage restricted progenitor cell is_a: CL:0001019 ! CD115-positive monocyte OR common dendritic progenitor -is_a: PR:000050567 intersection_of: CL:0000576 ! monocyte intersection_of: has_plasma_membrane_part PR:000001012 ! integrin alpha-M intersection_of: has_plasma_membrane_part PR:000002062 ! macrophage colony-stimulating factor 1 receptor @@ -20386,7 +20758,6 @@ subset: cellxgene_subset synonym: "CD133-positive hematopoietic stem cell" EXACT [PMID:16140871] xref: CALOHA:TS-0448 is_a: CL:0000037 {is_inferred="true"} ! hematopoietic stem cell -is_a: PR:000050567 intersection_of: CL:0000037 ! hematopoietic stem cell intersection_of: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 intersection_of: CL:4030046 PR:000001408 ! lacks_plasma_membrane_part ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 @@ -20417,7 +20788,6 @@ synonym: "CD217-positive common lymphocyte progenitor" EXACT [] synonym: "CD217-positive common lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor is_a: CL:0001030 ! CD117-positive common myeloid progenitor OR CD217-positive common lymphoid progenitor -is_a: PR:000050567 intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: CL:4030046 PR:000001014 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RABC intersection_of: has_low_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor @@ -20466,7 +20836,6 @@ comment: These markers are associated with human cells. Originally described in synonym: "CD7-negative lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor is_a: CL:0001012 ! CD7-negative lymphoid progenitor OR granulocyte monocyte progenitor -is_a: PR:000050567 intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA intersection_of: CL:4030046 PR:000001836 ! lacks_plasma_membrane_part CD7 molecule @@ -20483,7 +20852,6 @@ def: "CD7-positive lymphoid progenitor cell is a lymphoid progenitor cell that i comment: These markers are associated with human cells. Originally described in the dendritic cell ontology (DC_CL:0000040)(PMID:19243617). synonym: "CD7-positive lymphoid precursor" EXACT [] is_a: CL:0000051 {is_inferred="true"} ! common lymphoid progenitor -is_a: PR:000050567 intersection_of: CL:0000051 ! common lymphoid progenitor intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA intersection_of: has_plasma_membrane_part PR:000001003 ! CD34 molecule @@ -20504,7 +20872,6 @@ synonym: "common dendritic precursor" EXACT [] synonym: "pro-DCs" EXACT [PMID:21219184] is_a: CL:0000763 ! myeloid cell is_a: CL:0001019 ! CD115-positive monocyte OR common dendritic progenitor -is_a: PR:000050567 is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0002031 ! hematopoietic lineage restricted progenitor cell intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -20635,7 +21002,6 @@ subset: cellxgene_subset subset: human_reference_atlas synonym: "monocyte" NARROW [PMID:22343568] is_a: CL:0000576 ! monocyte -is_a: PR:000050567 intersection_of: CL:0000576 ! monocyte intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon @@ -20678,7 +21044,6 @@ synonym: "myeloid stem cell" RELATED [ISBN:0878932437] synonym: "pluripotent stem cell (bone marrow)" RELATED [ISBN:0878932437] is_a: CL:0000049 ! common myeloid progenitor is_a: CL:0011026 ! progenitor cell -is_a: PR:000050567 intersection_of: CL:0000049 ! common myeloid progenitor intersection_of: capable_of GO:0002573 ! myeloid leukocyte differentiation intersection_of: capable_of GO:0043011 ! myeloid dendritic cell differentiation @@ -20730,6 +21095,27 @@ relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: has_characteristic PATO:0001401 ! oligopotent creation_date: 2010-01-06T03:43:27Z +[Term] +id: CL:0001065 +name: innate lymphoid cell +def: "A lymphocyte that lacks characteristic T cell, B cell, myeloid cell, and dendritic cell markers, that functions as part of the innate immune response to produce cytokines and other effector responses." [GOC:add, GOC:dsd, PMID:23292121, PMID:23348417] +subset: blood_and_immune_upper_slim +subset: cellxgene_subset +subset: human_reference_atlas +is_a: CL:0000542 ! lymphocyte +intersection_of: CL:0000542 ! lymphocyte +intersection_of: capable_of GO:0001816 ! cytokine production +intersection_of: capable_of GO:0045087 ! innate immune response +intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule +intersection_of: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon +relationship: capable_of GO:0001816 ! cytokine production +relationship: capable_of GO:0045087 ! innate immune response +relationship: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule +relationship: CL:4030046 PR:000001020 ! lacks_plasma_membrane_part CD3 epsilon +relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dcterms-date "2017-01-30T20:20:48Z" xsd:dateTime + [Term] id: CL:0001066 name: erythroid progenitor cell, mammalian @@ -20743,7 +21129,6 @@ synonym: "colony forming unit erythroid" RELATED [] synonym: "erythroid stem cell" RELATED [] xref: BTO:0004911 is_a: CL:0000038 ! erythroid progenitor cell -is_a: PR:000050567 intersection_of: CL:0000038 ! erythroid progenitor cell intersection_of: capable_of GO:0030218 ! erythrocyte differentiation intersection_of: CL:4030046 PR:000001002 ! lacks_plasma_membrane_part CD19 molecule @@ -20772,6 +21157,84 @@ relationship: CL:4030046 PR:000001889 ! lacks_plasma_membrane_part CD14 molecule relationship: CL:4030046 PR:000002978 ! lacks_plasma_membrane_part lymphocyte antigen 6G relationship: has_plasma_membrane_part PR:000001945 ! transferrin receptor protein 1 +[Term] +id: CL:0001067 +name: group 1 innate lymphoid cell +def: "An innate lymphoid cell that is capable of producing the type 1 cytokine IFN-gamma, but not Th2 or Th17 cell-associated cytokines." [GOC:add, GOC:dsd, PMID:23348417] +subset: human_reference_atlas +is_a: CL:0001065 ! innate lymphoid cell +intersection_of: CL:0001065 ! innate lymphoid cell +intersection_of: capable_of GO:0032609 ! type II interferon production +relationship: capable_of GO:0032609 ! type II interferon production +relationship: dc-contributor https://orcid.org/0000-0001-9990-8331 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dcterms-date "2017-01-30T20:42:44Z" xsd:dateTime + +[Term] +id: CL:0001072 +name: CD34-negative, CD117-positive innate lymphoid cell, human +def: "An innate lymphoid cell in the human with the phenotype CD34-negative, CD117-positive, and a precusor to NK cells, ILC2 cells, and ILC3 cells." [GOC:add, PMID:30193847, PMID:31201208] +synonym: "CD34-negative, CD117-positive ILC" EXACT [] +synonym: "CD34-negative, CD117-positive ILCP" EXACT [] +synonym: "CD34-negative, CD117-positive innate lymphoid cell precusor" EXACT [] +is_a: CL:0001082 ! immature innate lymphoid cell +intersection_of: CL:0001065 ! innate lymphoid cell +intersection_of: CL:4030046 PR:P28906 ! lacks_plasma_membrane_part hematopoietic progenitor cell antigen CD34 (human) +intersection_of: has_characteristic PATO:0001501 ! immature +intersection_of: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) +intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: CL:4030046 PR:P28906 ! lacks_plasma_membrane_part hematopoietic progenitor cell antigen CD34 (human) +relationship: develops_from CL:0001074 ! CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human +relationship: has_characteristic PATO:0001501 ! immature +relationship: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) +relationship: in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: CL:0001073 +name: CD34-negative, CD56-positive, CD117-positive innate lymphoid cell, human +def: "An innate lymphoid cell in the human with the phenotype CD34-negative, CD56-positive, CD117-positive.Thie cell type may include precusors to NK cells and ILC3 cells." [GOC:add, PMID:30193847, PMID:31201208] +synonym: "CD34-negative, CD56-positive, CD117-positive ILC" EXACT [] +synonym: "CD34-negative, CD56-positive, CD117-positive ILCP" EXACT [] +synonym: "CD34-negative, CD56-positive, CD117-positive innate lymphoid cell precursor" EXACT [] +is_a: CL:0001072 ! CD34-negative, CD117-positive innate lymphoid cell, human +intersection_of: CL:0001072 ! CD34-negative, CD117-positive innate lymphoid cell, human +intersection_of: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) +intersection_of: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) +intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) +relationship: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) +relationship: in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: CL:0001074 +name: CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human +def: "An innate lymphoid cell precursor in the human with the phenotype CD34-positive, CD56-positive, CD117-positive.Thie cell type may include precusors to NK cells and ILC3 cells." [GOC:add, PMID:30193847] +subset: cellxgene_subset +synonym: "CD34-positive, CD56-positive, CD117-positive CILP" EXACT [] +is_a: CL:0001082 ! immature innate lymphoid cell +intersection_of: CL:0001065 ! innate lymphoid cell +intersection_of: has_characteristic PATO:0001501 ! immature +intersection_of: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) +intersection_of: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) +intersection_of: has_plasma_membrane_part PR:P28906 ! hematopoietic progenitor cell antigen CD34 (human) +intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: has_characteristic PATO:0001501 ! immature +relationship: has_plasma_membrane_part PR:P10721 ! mast/stem cell growth factor receptor Kit (human) +relationship: has_plasma_membrane_part PR:P13591 ! neural cell adhesion molecule 1 (human) +relationship: has_plasma_membrane_part PR:P28906 ! hematopoietic progenitor cell antigen CD34 (human) +relationship: in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: CL:0001082 +name: immature innate lymphoid cell +def: "An innate lyphoid cell with an immature phenotype." [GOC:add] +subset: cellxgene_subset +synonym: "immature ILC" EXACT [] +is_a: CL:0001065 ! innate lymphoid cell +intersection_of: CL:0001065 ! innate lymphoid cell +intersection_of: has_characteristic PATO:0001501 ! immature +relationship: has_characteristic PATO:0001501 ! immature + [Term] id: CL:0001200 name: lymphocyte of B lineage, CD19-positive @@ -20916,7 +21379,6 @@ name: CD34-positive, CD38-positive megakaryocyte erythroid progenitor cell def: "A megakaryocyte erythroid progenitor cell is CD34-positive, CD38-positive and is IL3-receptor alpha-negative and CD45RA-negative." [GOC:tfm, PMID:12615892, PMID:190227700] comment: Markers are associated with human cell type. is_a: CL:0000050 {is_inferred="true"} ! megakaryocyte-erythroid progenitor cell -is_a: PR:000050567 intersection_of: CL:0000050 ! megakaryocyte-erythroid progenitor cell intersection_of: CL:4030046 PR:000001015 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C isoform CD45RA intersection_of: CL:4030046 PR:000001865 ! lacks_plasma_membrane_part interleukin-3 receptor class 2 alpha chain @@ -20935,7 +21397,6 @@ name: Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell def: "A megakaryocyte erythroid progenitor cell that is Kit-positive and is Sca1-negative, CD34-negative, CD90-negative, IL7r-alpha-negative and Fcgr II/III-low." [GOC:tfm, http://www.immgen.org/index_content.html, PMID:12615892, PMID:19022770] comment: Markers are associated with mouse cells. is_a: CL:0000050 {is_inferred="true"} ! megakaryocyte-erythroid progenitor cell -is_a: PR:000050567 intersection_of: CL:0000050 ! megakaryocyte-erythroid progenitor cell intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule intersection_of: CL:4030046 PR:000001479 ! lacks_plasma_membrane_part low affinity immunoglobulin gamma Fc region receptor II @@ -20980,7 +21441,6 @@ def: "A progenitor cell that can give rise to plasmacytoid and myeloid dendritic comment: Markers are associated with mouse cells. synonym: "murine MDP" EXACT [] is_a: CL:0002009 {is_inferred="true"} ! macrophage dendritic cell progenitor -is_a: PR:000050567 intersection_of: CL:0002009 ! macrophage dendritic cell progenitor intersection_of: has_high_plasma_membrane_amount PR:000002065 ! mast/stem cell growth factor receptor intersection_of: has_plasma_membrane_part PR:000001206 ! CX3C chemokine receptor 1 @@ -21089,7 +21549,6 @@ name: Kit-negative, Ly-76 high orthochromatophilic erythroblasts def: "An orthochromatophilic erythroblast that is ter119-high, CD71-low, and Kit-negative." [GOC:ak, GOC:tfm, PMID:19805084] comment: Cell surface markers associated with mouse cells. is_a: CL:0000552 {is_inferred="true"} ! orthochromatic erythroblast -is_a: PR:000050567 intersection_of: CL:0000552 ! orthochromatic erythroblast intersection_of: CL:4030046 PR:000001869 ! lacks_plasma_membrane_part interleukin-7 receptor subunit alpha intersection_of: CL:4030046 PR:000002065 ! lacks_plasma_membrane_part mast/stem cell growth factor receptor @@ -21111,7 +21570,6 @@ name: CD71-negative, GlyA-positive orthochromatic erythroblast def: "An erythroblast that is GlyA-positive and CD71-negative." [GOC:ak, GOC:tfm, PMID:1638021] comment: Markers associated with human cells. is_a: CL:0000552 {is_inferred="true"} ! orthochromatic erythroblast -is_a: PR:000050567 intersection_of: CL:0000552 ! orthochromatic erythroblast intersection_of: CL:4030046 PR:000001945 ! lacks_plasma_membrane_part transferrin receptor protein 1 intersection_of: has_plasma_membrane_part PR:000001460 ! glycophorin-A @@ -21153,7 +21611,6 @@ name: GlyA-positive erythrocyte def: "An enucleate erythrocyte that is GlyA-positive." [GOC:ak, GOC:tfm, PMID:20134094] comment: Marker is associated with human cell types. is_a: CL:0000595 {is_inferred="true"} ! enucleate erythrocyte -is_a: PR:000050567 intersection_of: CL:0000595 ! enucleate erythrocyte intersection_of: has_plasma_membrane_part PR:000001460 ! glycophorin-A relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -21167,7 +21624,6 @@ name: Ly-76 high positive erythrocyte def: "An enucleate erythrocyte that is Lyg-76-high." [GOC:ak, GOC:tfm, PMID:19805084] comment: Marker is associated with mouse cell types. is_a: CL:0000595 {is_inferred="true"} ! enucleate erythrocyte -is_a: PR:000050567 intersection_of: CL:0000595 ! enucleate erythrocyte intersection_of: has_high_plasma_membrane_amount PR:000002981 ! lymphocyte antigen 76 (mouse) relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -21661,7 +22117,7 @@ creation_date: 2010-06-29T11:50:47Z [Term] id: CL:0002075 -name: brush cell of trachebronchial tree +name: brush cell of tracheobronchial tree def: "Infrequent type of columnar epithelial cell. This cell is characterized by the presence of a tuft of blunt, squat microvilli (approximately 120-140/cell) on the cell surface. The microvilli contain filaments that stretch into the underlying cytoplasm. They have a distinctive pear shape with a wide base and a narrow microvillous apex. Function not known." [GOC:tfm, ISBN:0517223651, PMID:15817800] subset: cellxgene_subset synonym: "pulmonary brush cell" RELATED [] @@ -21834,6 +22290,19 @@ relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2010-07-22T03:26:00Z +[Term] +id: CL:0002090 +name: polar body +def: "One of two small cells formed by the first and second meiotic division of oocytes." [GOC:tfm, http://en.wikipedia.org/wiki/Polar_body, ISBN:068340007X] +xref: EHDAA2:0004716 +xref: FMA:85543 +xref: MESH:D059705 +xref: WBbt:0008429 +xref: XAO:0000262 +is_a: CL:0000021 ! female germ cell +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 +creation_date: 2010-08-23T09:49:53Z + [Term] id: CL:0002092 name: bone marrow cell @@ -22683,7 +23152,7 @@ name: brush cell of lobular bronchiole def: "A brush cell found in the epithelium of lobular bronchiole." [GOC:tfm] xref: FMA:263220 is_a: CL:0000082 ! epithelial cell of lung -is_a: CL:0002075 ! brush cell of trachebronchial tree +is_a: CL:0002075 ! brush cell of tracheobronchial tree intersection_of: CL:0002204 ! brush cell intersection_of: part_of UBERON:8600001 ! epithelium of lobular bronchiole relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -22696,7 +23165,7 @@ name: brush cell of terminal bronchiole def: "A brush cell of the epithelium in the terminal bronchiole." [GOC:tfm] xref: FMA:263228 is_a: CL:0000082 ! epithelial cell of lung -is_a: CL:0002075 ! brush cell of trachebronchial tree +is_a: CL:0002075 ! brush cell of tracheobronchial tree intersection_of: CL:0002204 ! brush cell intersection_of: part_of UBERON:0001958 ! terminal bronchiole epithelium relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -22711,7 +23180,7 @@ subset: cellxgene_subset subset: human_reference_atlas xref: FMA:263224 is_a: CL:0000307 {is_inferred="true"} ! tracheal epithelial cell -is_a: CL:0002075 {is_inferred="true"} ! brush cell of trachebronchial tree +is_a: CL:0002075 {is_inferred="true"} ! brush cell of tracheobronchial tree intersection_of: CL:0002204 ! brush cell intersection_of: part_of UBERON:0001901 ! epithelium of trachea relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -22725,7 +23194,7 @@ name: brush cell of bronchus def: "A brush cell found in the epithelium of bronchus." [GOC:tfm] subset: human_reference_atlas xref: FMA:263226 -is_a: CL:0002075 ! brush cell of trachebronchial tree +is_a: CL:0002075 ! brush cell of tracheobronchial tree is_a: CL:0002328 ! bronchial epithelial cell intersection_of: CL:0002204 ! brush cell intersection_of: part_of UBERON:0002031 ! epithelium of bronchus @@ -23243,7 +23712,7 @@ creation_date: 2010-09-13T02:37:23Z [Term] id: CL:0002301 name: type B synovial cell -def: "A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles." [GOC:tfm, ISBN:0517223651, PMID:34433485, PMID:34772990] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-0819-0473"} +def: "A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles." [GOC:tfm, ISBN:0517223651, PMID:34433485, PMID:34772990] {terms:contributor="https://orcid.org/0000-0002-0819-0473"} comment: Type B synovial cells play a key role in the pathogenesis of chronic inflammatory diseases, such as rheumatoid arthritis, and are essential for the maintenance of normal joint functions. Fibroblast-like synoviocytes from different joints have different properties, which may contribute to the characteristic pattern of joint involvement in different types of arthritis. {xref="https://en.wikipedia.org/wiki/Fibroblast-like_synoviocyte", xref="PMID:34433485"} synonym: "fibroblast-like synoviocyte" EXACT [] synonym: "synovial fibroblast" EXACT [PMID:23147896] @@ -23577,6 +24046,31 @@ is_a: CL:0002261 ! endothelial cell of viscerocranial mucosa relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 creation_date: 2010-09-20T02:52:54Z +[Term] +id: CL:0002338 +name: CD56-positive, CD161-positive immature natural killer cell, human +def: "A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-positive, CD117-positive, CD122-positive,and CD161-positive." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12457618] +comment: Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as a representative example (PRO at this time lacks a KIR superfamily). +subset: cellxgene_subset +synonym: "p-NK" RELATED [PMID:12457618] +is_a: CL:0000823 ! immature natural killer cell +intersection_of: CL:0000823 ! immature natural killer cell +intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule +intersection_of: has_plasma_membrane_part PR:000001024 ! neural cell adhesion molecule 1 +intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +intersection_of: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein +intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 +relationship: develops_from CL:0002344 ! CD56-negative, CD161-positive immature natural killer cell, human +relationship: has_plasma_membrane_part PR:000001024 ! neural cell adhesion molecule 1 +relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +relationship: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein +relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: in_taxon NCBITaxon:9606 ! Homo sapiens +creation_date: 2010-09-21T10:06:53Z + [Term] id: CL:0002339 name: prostate stem cell @@ -23601,6 +24095,29 @@ relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2010-09-20T03:34:10Z +[Term] +id: CL:0002344 +name: CD56-negative, CD161-positive immature natural killer cell, human +def: "A natural killer cell that is developmentally immature, has the phenotype CD34-negative, CD56-negative, CD117-positive, CD122-positive,and CD161-positive." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12457618] +comment: Human markers; killer cell immunoglobulin-like receptor 2DL1 is used as a representative example (PRO at this time lacks a KIR superfamily). +synonym: "p-NK" RELATED [PMID:12457618] +is_a: CL:0000823 ! immature natural killer cell +intersection_of: CL:0000823 ! immature natural killer cell +intersection_of: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule +intersection_of: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 +intersection_of: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +intersection_of: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein +intersection_of: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +intersection_of: in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: CL:4030046 PR:000001003 ! lacks_plasma_membrane_part CD34 molecule +relationship: CL:4030046 PR:000001024 ! lacks_plasma_membrane_part neural cell adhesion molecule 1 +relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 +relationship: has_plasma_membrane_part PR:000001381 ! interleukin-2 receptor subunit beta +relationship: has_plasma_membrane_part PR:000001874 ! KLRB1-like protein +relationship: has_plasma_membrane_part PR:000002065 ! mast/stem cell growth factor receptor +relationship: in_taxon NCBITaxon:9606 ! Homo sapiens +creation_date: 2010-09-20T04:33:11Z + [Term] id: CL:0002350 name: endocardial cell @@ -23645,7 +24162,6 @@ id: CL:0002353 name: fetal liver hematopoietic progenitor cell def: "A hematopoietic stem cell that resides in the fetal liver. In mice, this cell type is first observed at E10.5. This cell type is MHC-positive, HSA-positive, AA4.1-positive, CD45-positive, Sca-1 positive, CD150-positive, CD48-negative and CD244-negative." [GOC:tfm, ISBN:978-1-60327-346-6, PMID:16569764] is_a: CL:0002352 {is_inferred="true"} ! gestational hematopoietic stem cell -is_a: PR:000050567 is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: CL:0002352 ! gestational hematopoietic stem cell intersection_of: CL:4030046 PR:000001308 ! lacks_plasma_membrane_part CD48 molecule @@ -23674,7 +24190,6 @@ name: yolk sac hematopoietic stem cell def: "A hematopoietic stem found in the yolk sac. In mice, this cell type is Sca-1-negative, CD45-negative, MHC-negative, HSA-positive, AA4.1-positive, CD44-positive." [doi:10.1097/MOH.0b013e3282f97ae1, GOC:tfm] synonym: "hemangioblast precursor" EXACT [] is_a: CL:0002352 {is_inferred="true"} ! gestational hematopoietic stem cell -is_a: PR:000050567 intersection_of: CL:0002352 ! gestational hematopoietic stem cell intersection_of: CL:4030046 GO:0042611 ! lacks_plasma_membrane_part MHC protein complex intersection_of: CL:4030046 PR:000001006 ! lacks_plasma_membrane_part receptor-type tyrosine-protein phosphatase C @@ -23827,7 +24342,6 @@ name: myotube def: "A transversely striated, synctial muscle cell, formed by the fusion of myoblasts." [GOC:dos, GOC:tfm, ISBN:0323052908, PMID:22274696] synonym: "myotubule" EXACT [] synonym: "single cell sarcomere" EXACT [] -xref: FBbt:00005812 is_a: CL:0000228 ! multinucleate cell is_a: CL:0000737 ! striated muscle cell intersection_of: CL:0000187 ! muscle cell @@ -23872,7 +24386,6 @@ name: immature Schwann cell def: "A glial cell that develops from a Schwann cell precursor. The immature Schwann cell is embedded among neurons (axons) with minimal extracellular spaces separating them from nerve cell membranes and has a basal lamina. Cells can survive without an axon present. Immature Schwann cell can be found communally ensheathing large groups of axons." [GOC:cvs, GOC:tfm, ISBN:0721662544] subset: cellxgene_subset synonym: "Schwann cell" BROAD [] -xref: ZFA:0001725 is_a: CL:0002573 ! Schwann cell is_a: UBERON:0010313 ! neural crest-derived structure relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 @@ -24059,7 +24572,6 @@ subset: human_reference_atlas synonym: "ETP" EXACT [] synonym: "preT.ETP.Th" EXACT [] is_a: CL:0000827 {is_inferred="true"} ! pro-T cell -is_a: PR:000050567 intersection_of: CL:0000827 ! pro-T cell intersection_of: CL:4030046 PR:000001380 ! lacks_plasma_membrane_part interleukin-2 receptor subunit alpha intersection_of: has_plasma_membrane_part PR:000001307 ! CD44 molecule @@ -24083,7 +24595,7 @@ subset: human_reference_atlas synonym: "O-2A/OPC" RELATED OMO:0003000 [PMID:24133281] synonym: "O2A/OPC" RELATED OMO:0003000 [PMID:11756508] synonym: "oligodendrocyte-type 2 astrocyte (O-2A) progenitor cell" BROAD [PMID:2253328] -synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [PMID:24133281] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-0819-0473"} +synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [PMID:24133281] {terms:contributor="https://orcid.org/0000-0002-0819-0473"} xref: MESH:D000073637 is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) is_a: CL:0011026 ! progenitor cell @@ -24432,7 +24944,7 @@ creation_date: 2011-02-08T01:37:59Z [Term] id: CL:0002523 name: mesonephric podocyte -def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the mesonephros." [GOC:tfm] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-2244-7917"} +def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the mesonephros." [GOC:tfm] {terms:contributor="https://orcid.org/0000-0002-2244-7917"} synonym: "mesonephric glomerular visceral epithelial cell" EXACT [ZFA:0001674] is_a: CL:0000653 ! podocyte intersection_of: CL:0000653 ! podocyte @@ -24547,14 +25059,12 @@ creation_date: 2011-02-28T01:47:47Z id: CL:0002541 name: chorionic membrane mesenchymal stem cell def: "A mesenchymal stem cell of the chorionic membrane." [GOC:tfm] -subset: human_reference_atlas is_a: CL:0000134 ! mesenchymal stem cell is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0000134 ! mesenchymal stem cell intersection_of: part_of UBERON:0003124 ! chorion membrane relationship: dc-contributor https://orcid.org/0000-0003-1980-3228 relationship: part_of UBERON:0003124 ! chorion membrane -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2011-02-28T03:04:35Z [Term] @@ -24638,6 +25148,7 @@ creation_date: 2011-02-28T05:03:44Z [Term] id: CL:0002551 name: fibroblast of dermis +def: "Any skin fibroblast that is part of some dermis." [FBC:Autogenerated] is_a: CL:0002620 {is_inferred="true"} ! skin fibroblast intersection_of: CL:0002620 ! skin fibroblast intersection_of: part_of UBERON:0002067 ! dermis @@ -24648,6 +25159,7 @@ creation_date: 2011-02-28T05:05:33Z [Term] id: CL:0002552 name: fibroblast of gingiva +def: "Any fibroblast that is part of some gingiva." [FBC:Autogenerated] is_a: CL:0000057 {is_inferred="true"} ! fibroblast intersection_of: CL:0000057 ! fibroblast intersection_of: part_of UBERON:0001828 ! gingiva @@ -25134,6 +25646,7 @@ creation_date: 2011-03-06T05:43:24Z [Term] id: CL:0002598 name: bronchial smooth muscle cell +def: "Any smooth muscle cell that is part of some bronchus." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas xref: BTO:0004402 @@ -25183,6 +25696,7 @@ creation_date: 2011-03-06T05:53:28Z [Term] id: CL:0002602 name: annulus pulposus cell +def: "Any connective tissue cell that is part of some annulus fibrosus disci intervertebralis." [FBC:Autogenerated] synonym: "anulus pulposus cell" EXACT [] is_a: CL:0002320 {is_inferred="true"} ! connective tissue cell intersection_of: CL:0002320 ! connective tissue cell @@ -25401,6 +25915,7 @@ creation_date: 2011-03-14T12:31:49Z [Term] id: CL:0002621 name: gingival epithelial cell +def: "Any epithelial cell that is part of some gingival epithelium." [FBC:Autogenerated] is_a: CL:0002251 ! epithelial cell of alimentary canal intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0001949 ! gingival epithelium @@ -25451,6 +25966,7 @@ creation_date: 2011-03-15T11:59:23Z [Term] id: CL:0002631 name: epithelial cell of upper respiratory tract +def: "Any respiratory epithelial cell that is part of some upper respiratory tract." [FBC:Autogenerated] is_a: CL:0002368 {is_inferred="true"} ! respiratory epithelial cell intersection_of: CL:0002368 ! respiratory epithelial cell intersection_of: part_of UBERON:0001557 ! upper respiratory tract @@ -25461,6 +25977,7 @@ creation_date: 2011-06-21T12:28:55Z [Term] id: CL:0002632 name: epithelial cell of lower respiratory tract +def: "Any respiratory epithelial cell that is part of some lower respiratory tract." [FBC:Autogenerated] subset: cellxgene_subset is_a: CL:0002368 {is_inferred="true"} ! respiratory epithelial cell intersection_of: CL:0002368 ! respiratory epithelial cell @@ -25674,6 +26191,34 @@ intersection_of: CL:0000099 ! interneuron intersection_of: has_soma_location UBERON:0002240 ! spinal cord relationship: has_soma_location UBERON:0002240 ! spinal cord +[Term] +id: CL:0005001 +name: iridoblast +def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore." [CL:CVS] +comment: Derived from UBERON:0002342 neural crest. +is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0011026 ! progenitor cell +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from CL:0000333 ! migratory neural crest cell + +[Term] +id: CL:0005002 +name: xanthoblast +def: "A non-terminally differentiated cell that differentiates into a xanthophore." [CL:CVS] +is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0011026 ! progenitor cell +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from CL:0000333 ! migratory neural crest cell + +[Term] +id: CL:0005004 +name: pigment erythroblast +def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore." [CL:CVS] +is_a: CL:0000055 ! non-terminally differentiated cell +is_a: CL:0011026 ! progenitor cell +is_a: UBERON:0010313 ! neural crest-derived structure +relationship: develops_from CL:0000333 ! migratory neural crest cell + [Term] id: CL:0005006 name: ionocyte @@ -25683,6 +26228,17 @@ subset: human_reference_atlas is_a: CL:0000066 ! epithelial cell relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: CL:0005007 +name: Kolmer-Agduhr neuron +def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons." [PMID:18680739] +synonym: "KA cell" EXACT [] +synonym: "KA interneuron" EXACT [PMID:15539490] +synonym: "KA neuron" EXACT [PMID:9634146] +synonym: "Kolmer-Agduhr cell" EXACT [] +is_a: CL:0005000 ! spinal cord interneuron +is_a: CL:0011005 ! GABAergic interneuron + [Term] id: CL:0005008 name: macular hair cell @@ -25825,6 +26381,40 @@ relationship: develops_from CL:0000133 ! neurectodermal cell relationship: part_of UBERON:0002342 ! neural crest creation_date: 2012-06-27T08:27:35Z +[Term] +id: CL:0007005 +name: notochordal cell +def: "Cell that is part of the notochord." [GO_REF:0000034] +comment: NOTE: TO DO, notochord development still needs work. +is_a: CL:0000000 ! cell +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: develops_from CL:0007006 ! chordamesodermal cell +relationship: part_of UBERON:0002328 ! notochord +creation_date: 2012-06-27T08:47:31Z + +[Term] +id: CL:0007006 +name: chordamesodermal cell +def: "Mesodermal cell that is axially located and gives rise to the cells of the notochord." [GO_REF:0000034] +synonym: "axial mesodermal cell" EXACT [] +is_a: CL:0000222 ! mesodermal cell +is_a: UBERON:0004120 ! mesoderm-derived structure +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: part_of UBERON:0004880 ! chordamesoderm +creation_date: 2012-06-27T08:52:41Z + +[Term] +id: CL:0007008 +name: notochordal vacuole cell +def: "Notochordal cell that is inner portion of the notochord and becomes vacuolated as development proceeds." [CL:MAH] +synonym: "chordablast" EXACT [GO_REF:0000034] +synonym: "chordoblast" EXACT [PMID:14574572] +is_a: CL:0007005 ! notochordal cell +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +creation_date: 2012-06-27T09:29:30Z + [Term] id: CL:0007009 name: prechondroblast @@ -25916,7 +26506,6 @@ relationship: has_part GO:0030017 ! sarcomere id: CL:0008004 name: somatic muscle cell def: "A muscle cell that is part of some somatic muscle." [GOC:dos] -xref: FBbt:00005073 is_a: CL:0000187 ! muscle cell [Term] @@ -25938,7 +26527,6 @@ relationship: has_part GO:0030017 ! sarcomere id: CL:0008007 name: visceral muscle cell def: "A muscle cell that is part of some visceral muscle." [GOC:dos] -xref: FBbt:00005070 is_a: CL:0000187 ! muscle cell intersection_of: CL:0000187 ! muscle cell intersection_of: part_of UBERON:8600004 ! visceral muscle tissue @@ -26003,6 +26591,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0008021 name: anterior lateral line ganglion neuron +def: "Any neuron that has its soma located in some anterior lateral line ganglion." [FBC:Autogenerated] is_a: CL:2000031 ! lateral line ganglion neuron intersection_of: CL:0000540 ! neuron intersection_of: has_soma_location UBERON:2001391 ! anterior lateral line ganglion @@ -26046,7 +26635,6 @@ relationship: capable_of GO:0061533 ! norepinephrine secretion, neurotransmissio id: CL:0008026 name: open tracheal system tracheocyte def: "An epithelial cell that is part of the epithelium of a tracheal tube in an open tracheal system, such as that found in insects." [GOC:dos] -xref: FBbt:00005038 is_a: CL:0000066 ! epithelial cell intersection_of: CL:0000066 ! epithelial cell intersection_of: part_of UBERON:0003127 ! open tracheal system trachea @@ -26055,6 +26643,7 @@ relationship: part_of UBERON:0003127 ! open tracheal system trachea [Term] id: CL:0008028 name: visual system neuron +def: "Any neuron that is capable of part of some visual perception." [FBC:Autogenerated] is_a: CL:0000540 ! neuron intersection_of: CL:0000540 ! neuron intersection_of: capable_of_part_of GO:0007601 ! visual perception @@ -26103,6 +26692,7 @@ creation_date: 2020-02-29T17:33:55Z [Term] id: CL:0008035 name: microcirculation associated smooth muscle cell +def: "Any vascular associated smooth muscle cell that is part of some microcirculatory vessel." [FBC:Autogenerated] is_a: CL:0000359 ! vascular associated smooth muscle cell is_a: CL:0008034 ! mural cell intersection_of: CL:0000359 ! vascular associated smooth muscle cell @@ -27079,6 +27669,7 @@ relationship: part_of UBERON:0002353 ! bundle of His [Term] id: CL:0010006 name: cardiac blood vessel endothelial cell +def: "Any blood vessel endothelial cell that is part of some heart." [FBC:Autogenerated] is_a: CL:0000071 ! blood vessel endothelial cell is_a: CL:0010008 ! cardiac endothelial cell intersection_of: CL:0000071 ! blood vessel endothelial cell @@ -27088,6 +27679,7 @@ relationship: part_of UBERON:0000948 ! heart [Term] id: CL:0010007 name: His-Purkinje system cell +def: "Any cell that is part of some His-Purkinje system." [FBC:Autogenerated] is_a: CL:0002494 ! cardiocyte is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: CL:0000000 ! cell @@ -27097,6 +27689,7 @@ relationship: part_of UBERON:0004146 ! His-Purkinje system [Term] id: CL:0010008 name: cardiac endothelial cell +def: "Any endothelial cell that is part of some heart." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas is_a: CL:0000115 ! endothelial cell @@ -27109,6 +27702,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0010009 name: camera-type eye photoreceptor cell +def: "Any photoreceptor cell that is part of some camera-type eye." [FBC:Autogenerated] synonym: "camera type eye photoreceptor cell" EXACT [] is_a: CL:0000287 ! eye photoreceptor cell is_a: CL:0009004 ! retinal cell @@ -27122,6 +27716,7 @@ relationship: part_of UBERON:0000966 {seeAlso="https://github.com/obophenotype/c [Term] id: CL:0010010 name: cerebellar stellate cell +def: "Any stellate neuron that has its soma located in some cerebellum." [FBC:Autogenerated] is_a: CL:0000122 ! stellate neuron is_a: CL:1001611 ! cerebellar neuron intersection_of: CL:0000122 ! stellate neuron @@ -27176,6 +27771,7 @@ relationship: seeAlso https://github.com/obophenotype/cell-ontology/issues/786 [Term] id: CL:0010020 name: cardiac glial cell +def: "Any glial cell that is part of some heart." [FBC:Autogenerated] is_a: CL:0000125 ! glial cell is_a: CL:0002494 ! cardiocyte is_a: UBERON:0004120 ! mesoderm-derived structure @@ -27186,6 +27782,7 @@ relationship: part_of UBERON:0000948 ! heart [Term] id: CL:0010021 name: cardiac myoblast +def: "Any myoblast that develops into some cardiac muscle cell." [FBC:Autogenerated] xref: MESH:D032386 is_a: CL:0000056 ! myoblast intersection_of: CL:0000056 ! myoblast @@ -27454,6 +28051,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:0013000 name: forebrain radial glial cell +def: "Any radial glial cell that is part of some forebrain." [FBC:Autogenerated] subset: cellxgene_subset is_a: CL:0000681 ! radial glial cell intersection_of: CL:0000681 ! radial glial cell @@ -27762,6 +28360,7 @@ property_value: dcterms-date "2020-10-15T12:47:46Z" xsd:dateTime [Term] id: CL:1000001 name: retrotrapezoid nucleus neuron +def: "Any neuron that has its soma located in some retrotrapezoid nucleus." [FBC:Autogenerated] is_a: CL:2000029 ! central nervous system neuron intersection_of: CL:0000540 ! neuron intersection_of: has_soma_location UBERON:0009918 ! retrotrapezoid nucleus @@ -27771,6 +28370,7 @@ relationship: has_soma_location UBERON:0009918 ! retrotrapezoid nucleus [Term] id: CL:1000022 name: mesonephric nephron tubule epithelial cell +def: "Any epithelial cell that is part of some mesonephric nephron tubule." [FBC:Autogenerated] is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -27781,6 +28381,7 @@ relationship: part_of UBERON:0005329 ! mesonephric nephron tubule [Term] id: CL:1000042 name: forebrain neuroblast +def: "Any neuroblast (sensu Vertebrata) that is part of some forebrain." [FBC:Autogenerated] is_a: CL:0000031 ! neuroblast (sensu Vertebrata) is_a: CL:0002319 ! neural cell is_a: UBERON:0004121 ! ectoderm-derived structure @@ -27791,6 +28392,7 @@ relationship: part_of UBERON:0001890 ! forebrain [Term] id: CL:1000050 name: lateral line nerve glial cell +def: "Any glial cell that is part of some lateral line nerve." [FBC:Autogenerated] is_a: CL:0000125 ! glial cell intersection_of: CL:0000125 ! glial cell intersection_of: part_of UBERON:0008906 ! lateral line nerve @@ -27799,6 +28401,7 @@ relationship: part_of UBERON:0008906 ! lateral line nerve [Term] id: CL:1000073 name: spinal cord radial glial cell +def: "Any radial glial cell that is part of some spinal cord." [FBC:Autogenerated] is_a: CL:0000681 ! radial glial cell intersection_of: CL:0000681 ! radial glial cell intersection_of: part_of UBERON:0002240 ! spinal cord @@ -27807,6 +28410,7 @@ relationship: part_of UBERON:0002240 ! spinal cord [Term] id: CL:1000090 name: pronephric nephron tubule epithelial cell +def: "Any epithelial cell that is part of some pronephric nephron tubule." [FBC:Autogenerated] is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -27817,6 +28421,7 @@ relationship: part_of UBERON:0005310 ! pronephric nephron tubule [Term] id: CL:1000123 name: metanephric nephron tubule epithelial cell +def: "Any epithelial cell that is part of some metanephric nephron tubule." [FBC:Autogenerated] is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -27827,6 +28432,7 @@ relationship: part_of UBERON:0005146 ! metanephric nephron tubule [Term] id: CL:1000143 name: lung goblet cell +def: "Any goblet cell that is part of some lung." [FBC:Autogenerated] subset: cellxgene_subset is_a: CL:0000082 ! epithelial cell of lung is_a: CL:0002370 ! respiratory goblet cell @@ -27851,6 +28457,7 @@ relationship: part_of UBERON:0000946 ! cardiac valve [Term] id: CL:1000217 name: growth plate cartilage chondrocyte +def: "Any chondrocyte that is part of some growth plate cartilage." [FBC:Autogenerated] is_a: CL:0000138 ! chondrocyte intersection_of: CL:0000138 ! chondrocyte intersection_of: part_of UBERON:0004129 ! growth plate cartilage @@ -27859,6 +28466,7 @@ relationship: part_of UBERON:0004129 ! growth plate cartilage [Term] id: CL:1000222 name: stomach neuroendocrine cell +def: "Any neuroendocrine cell that is part of some stomach." [FBC:Autogenerated] is_a: CL:0000164 ! enteroendocrine cell is_a: CL:0000165 ! neuroendocrine cell is_a: CL:0002659 ! glandular cell of stomach @@ -27893,6 +28501,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000236 name: posterior lateral line nerve glial cell +def: "Any glial cell that is part of some posterior lateral line nerve." [FBC:Autogenerated] is_a: CL:1000050 ! lateral line nerve glial cell intersection_of: CL:0000125 ! glial cell intersection_of: part_of UBERON:2000175 ! posterior lateral line nerve @@ -27901,6 +28510,7 @@ relationship: part_of UBERON:2000175 ! posterior lateral line nerve [Term] id: CL:1000239 name: anterior lateral line nerve glial cell +def: "Any glial cell that is part of some anterior lateral line nerve." [FBC:Autogenerated] is_a: CL:1000050 ! lateral line nerve glial cell intersection_of: CL:0000125 ! glial cell intersection_of: part_of UBERON:2000425 ! anterior lateral line nerve @@ -27909,6 +28519,7 @@ relationship: part_of UBERON:2000425 ! anterior lateral line nerve [Term] id: CL:1000245 name: posterior lateral line ganglion neuron +def: "Any neuron that has its soma located in some posterior lateral line ganglion." [FBC:Autogenerated] is_a: CL:2000031 ! lateral line ganglion neuron intersection_of: CL:0000540 ! neuron intersection_of: has_soma_location UBERON:2001314 ! posterior lateral line ganglion @@ -27917,6 +28528,7 @@ relationship: has_soma_location UBERON:2001314 ! posterior lateral line ganglion [Term] id: CL:1000271 name: lung ciliated cell +def: "Any ciliated cell that is part of some lung." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas is_a: CL:4030034 ! respiratory ciliated cell @@ -27928,6 +28540,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000272 name: lung secretory cell +def: "Any secretory cell that is part of some lung." [FBC:Autogenerated] subset: cellxgene_subset is_a: CL:0000151 ! secretory cell is_a: UBERON:0004119 ! endoderm-derived structure @@ -28936,6 +29549,7 @@ name: myoepithelial cell of dilator pupillae def: "A myoepithelial cell that is part of the dilatator pupillae." [GOC:tfm] xref: FMA:70619 is_a: CL:0000185 {is_inferred="true"} ! myoepithelial cell +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: CL:0000185 ! myoepithelial cell intersection_of: part_of UBERON:0001608 ! dilatator pupillae @@ -29380,6 +29994,7 @@ relationship: part_of UBERON:0001231 ! nephron tubule [Term] id: CL:1000510 name: kidney glomerular epithelial cell +def: "Any kidney epithelial cell that is part of some glomerular epithelium." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001023 is_a: CL:1000746 ! glomerular cell @@ -29435,6 +30050,7 @@ relationship: part_of UBERON:0004203 ! cortical collecting duct [Term] id: CL:1000550 name: kidney papillary duct principal epithelial cell +def: "Any kidney cell that is part of some papillary duct." [FBC:Autogenerated] subset: kidney_upper_slim xref: KUPO:0001064 is_a: CL:1001225 ! kidney collecting duct cell @@ -29445,6 +30061,7 @@ relationship: part_of UBERON:0005167 ! papillary duct [Term] id: CL:1000596 name: inner renal cortex cell +def: "Any kidney cell that is part of some juxtamedullary cortex." [FBC:Autogenerated] xref: KUPO:0001111 is_a: CL:0002681 ! kidney cortical cell intersection_of: CL:1000497 ! kidney cell @@ -29468,6 +30085,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000600 name: lower urinary tract cell +def: "Any cell that is part of some lower urinary tract." [FBC:Autogenerated] xref: KUPO:0001115 is_a: CL:0000000 ! cell intersection_of: CL:0000000 ! cell @@ -29477,6 +30095,7 @@ relationship: part_of UBERON:0001556 ! lower urinary tract [Term] id: CL:1000601 name: ureteral cell +def: "Any cell that is part of some ureter." [FBC:Autogenerated] xref: KUPO:0001116 is_a: CL:0000000 ! cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -29487,6 +30106,7 @@ relationship: part_of UBERON:0000056 ! ureter [Term] id: CL:1000606 name: kidney nerve cell +def: "Any neuron that has its soma located in some kidney." [FBC:Autogenerated] xref: KUPO:0001015 is_a: CL:1000500 ! kidney interstitial cell is_a: CL:2000032 ! peripheral nervous system neuron @@ -29498,6 +30118,7 @@ relationship: has_soma_location UBERON:0002113 ! kidney [Term] id: CL:1000612 name: kidney corpuscule cell +def: "Any renal cortical epithelial cell that is part of some renal corpuscle." [FBC:Autogenerated] subset: kidney_upper_slim xref: KUPO:0001021 is_a: CL:0002584 {is_inferred="true"} ! renal cortical epithelial cell @@ -29509,6 +30130,7 @@ relationship: part_of UBERON:0001229 ! renal corpuscle [Term] id: CL:1000615 name: kidney cortex tubule cell +def: "Any kidney tubule cell that is part of some renal cortex tubule." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001024 is_a: CL:0002584 ! renal cortical epithelial cell @@ -29521,6 +30143,7 @@ relationship: part_of UBERON:0006853 ! renal cortex tubule [Term] id: CL:1000616 name: kidney outer medulla cell +def: "Any kidney medulla cell that is part of some outer medulla of kidney." [FBC:Autogenerated] xref: KUPO:0001025 is_a: CL:1000504 {is_inferred="true"} ! kidney medulla cell intersection_of: CL:1000504 ! kidney medulla cell @@ -29530,6 +30153,7 @@ relationship: part_of UBERON:0001293 ! outer medulla of kidney [Term] id: CL:1000617 name: kidney inner medulla cell +def: "Any kidney medulla cell that is part of some inner medulla of kidney." [FBC:Autogenerated] xref: KUPO:0001026 is_a: CL:1000504 {is_inferred="true"} ! kidney medulla cell intersection_of: CL:1000504 ! kidney medulla cell @@ -29539,6 +30163,7 @@ relationship: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: CL:1000618 name: juxtaglomerular complex cell +def: "Any kidney cortical cell that is part of some juxtaglomerular apparatus." [FBC:Autogenerated] subset: kidney_upper_slim synonym: "juxtaglomerulus cell" EXACT [GO:0072052] xref: KUPO:0001028 @@ -29586,6 +30211,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000702 name: kidney pelvis smooth muscle cell +def: "Any smooth muscle cell that is part of some kidney pelvis smooth muscle." [FBC:Autogenerated] xref: KUPO:0001113 is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell is_a: CL:1000505 {is_inferred="true"} ! kidney pelvis cell @@ -29596,6 +30222,7 @@ relationship: part_of UBERON:0004227 ! kidney pelvis smooth muscle [Term] id: CL:1000703 name: kidney pelvis urothelial cell +def: "Any kidney epithelial cell that is part of some kidney pelvis urothelium." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001114 is_a: CL:0000731 ! urothelial cell @@ -29608,6 +30235,7 @@ relationship: part_of UBERON:0004788 ! kidney pelvis urothelium [Term] id: CL:1000706 name: ureter urothelial cell +def: "Any urothelial cell that is part of some urothelium of ureter." [FBC:Autogenerated] xref: KUPO:0001117 is_a: CL:0000731 {is_inferred="true"} ! urothelial cell is_a: CL:1000601 {is_inferred="true"} ! ureteral cell @@ -29619,6 +30247,7 @@ relationship: part_of UBERON:0001254 ! urothelium of ureter [Term] id: CL:1000708 name: ureter adventitial cell +def: "Any ureteral cell that is part of some adventitia of ureter." [FBC:Autogenerated] subset: human_reference_atlas xref: KUPO:0001119 is_a: CL:0000115 ! endothelial cell @@ -29632,6 +30261,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000714 name: kidney cortex collecting duct principal cell +def: "Any renal principal cell that is part of some cortical collecting duct." [FBC:Autogenerated] subset: human_reference_atlas xref: KUPO:0001130 is_a: CL:1000549 {is_inferred="true"} ! kidney cortex collecting duct epithelial cell @@ -29657,6 +30287,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000718 name: kidney inner medulla collecting duct principal cell +def: "Any renal principal cell that is part of some inner medullary collecting duct." [FBC:Autogenerated] subset: human_reference_atlas xref: KUPO:0001134 is_a: CL:1000547 {is_inferred="true"} ! kidney inner medulla collecting duct epithelial cell @@ -29669,6 +30300,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000721 name: kidney papillary duct principal cell +def: "Any renal principal cell that is part of some papillary duct." [FBC:Autogenerated] xref: KUPO:0001137 is_a: CL:1000550 {is_inferred="true"} ! kidney papillary duct principal epithelial cell is_a: CL:1001431 ! kidney collecting duct principal cell @@ -29679,6 +30311,7 @@ relationship: part_of UBERON:0005167 ! papillary duct [Term] id: CL:1000746 name: glomerular cell +def: "Any kidney corpuscule cell that is part of some renal glomerulus." [FBC:Autogenerated] xref: KUPO:0001036 is_a: CL:1000612 {is_inferred="true"} ! kidney corpuscule cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -29689,6 +30322,7 @@ relationship: part_of UBERON:0000074 ! renal glomerulus [Term] id: CL:1000768 name: kidney connecting tubule epithelial cell +def: "Any nephron tubule epithelial cell that is part of some renal connecting tubule." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas subset: kidney_upper_slim @@ -29726,6 +30360,7 @@ relationship: part_of UBERON:0005213 ! outer renal medulla interstitium [Term] id: CL:1000838 name: kidney proximal convoluted tubule epithelial cell +def: "Any epithelial cell of proximal tubule that is part of some proximal convoluted tubule." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001045 is_a: CL:0002306 {is_inferred="true"} ! epithelial cell of proximal tubule @@ -29736,6 +30371,7 @@ relationship: part_of UBERON:0001287 ! proximal convoluted tubule [Term] id: CL:1000839 name: kidney proximal straight tubule epithelial cell +def: "Any epithelial cell of proximal tubule that is part of some proximal straight tubule." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001046 is_a: CL:0002306 {is_inferred="true"} ! epithelial cell of proximal tubule @@ -29748,6 +30384,7 @@ relationship: part_of UBERON:0001290 ! proximal straight tubule [Term] id: CL:1000849 name: kidney distal convoluted tubule epithelial cell +def: "Any epithelial cell of distal tubule that is part of some distal convoluted tubule." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas subset: kidney_upper_slim @@ -29761,6 +30398,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1000850 name: macula densa epithelial cell +def: "Any epithelial cell of distal tubule that is part of some macula densa." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas xref: KUPO:0001057 @@ -29787,6 +30425,7 @@ relationship: participates_in GO:0008015 ! blood circulation [Term] id: CL:1000891 name: kidney arterial blood vessel cell +def: "Any kidney blood vessel cell that is part of some kidney arterial blood vessel." [FBC:Autogenerated] subset: kidney_upper_slim xref: KUPO:0001029 is_a: CL:1000854 {is_inferred="true"} ! kidney blood vessel cell @@ -29797,6 +30436,7 @@ relationship: part_of UBERON:0003644 ! kidney arterial blood vessel [Term] id: CL:1000892 name: kidney capillary endothelial cell +def: "Any kidney blood vessel cell that is part of some kidney capillary." [FBC:Autogenerated] subset: cellxgene_subset subset: kidney_upper_slim xref: KUPO:0001030 @@ -29809,6 +30449,7 @@ relationship: part_of UBERON:0003527 ! kidney capillary [Term] id: CL:1000893 name: kidney venous blood vessel cell +def: "Any kidney blood vessel cell that is part of some renal vein." [FBC:Autogenerated] subset: kidney_upper_slim xref: KUPO:0001031 is_a: CL:1000854 {is_inferred="true"} ! kidney blood vessel cell @@ -29819,6 +30460,7 @@ relationship: part_of UBERON:0001140 ! renal vein [Term] id: CL:1000909 name: kidney loop of Henle epithelial cell +def: "Any nephron tubule epithelial cell that is part of some loop of Henle." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001047 is_a: CL:1000494 {is_inferred="true"} ! nephron tubule epithelial cell @@ -29829,16 +30471,20 @@ relationship: part_of UBERON:0001288 ! loop of Henle [Term] id: CL:1000979 name: ureter smooth muscle cell +def: "Any smooth muscle cell that is part of some muscular coat of ureter." [FBC:Autogenerated] +subset: human_reference_atlas xref: KUPO:0001118 is_a: CL:0000192 {is_inferred="true"} ! smooth muscle cell is_a: CL:1000601 {is_inferred="true"} ! ureteral cell intersection_of: CL:0000192 ! smooth muscle cell intersection_of: part_of UBERON:0006855 ! muscular coat of ureter relationship: part_of UBERON:0006855 ! muscular coat of ureter +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001005 name: glomerular capillary endothelial cell +def: "Any kidney capillary endothelial cell that is part of some glomerular capillary endothelium." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas xref: KUPO:0001037 @@ -29854,6 +30500,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001006 name: kidney afferent arteriole cell +def: "Any kidney arterial blood vessel cell that is part of some renal afferent arteriole." [FBC:Autogenerated] xref: KUPO:0001038 is_a: CL:1000612 ! kidney corpuscule cell is_a: CL:1000891 {is_inferred="true"} ! kidney arterial blood vessel cell @@ -29864,6 +30511,7 @@ relationship: part_of UBERON:0004639 ! renal afferent arteriole [Term] id: CL:1001009 name: kidney efferent arteriole cell +def: "Any kidney arterial blood vessel cell that is part of some renal efferent arteriole." [FBC:Autogenerated] xref: KUPO:0001041 is_a: CL:1000612 ! kidney corpuscule cell is_a: CL:1000891 {is_inferred="true"} ! kidney arterial blood vessel cell @@ -29874,6 +30522,7 @@ relationship: part_of UBERON:0004640 ! renal efferent arteriole [Term] id: CL:1001016 name: kidney loop of Henle ascending limb epithelial cell +def: "Any kidney loop of Henle epithelial cell that is part of some ascending limb of loop of Henle." [FBC:Autogenerated] subset: cellxgene_subset subset: kidney_upper_slim xref: KUPO:0001048 @@ -29886,6 +30535,7 @@ relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle [Term] id: CL:1001021 name: kidney loop of Henle descending limb epithelial cell +def: "Any kidney loop of Henle epithelial cell that is part of some descending limb of loop of Henle." [FBC:Autogenerated] subset: kidney_upper_slim xref: KUPO:0001053 is_a: CL:1000909 {is_inferred="true"} ! kidney loop of Henle epithelial cell @@ -29923,6 +30573,7 @@ relationship: part_of UBERON:0004726 ! vasa recta [Term] id: CL:1001045 name: kidney cortex artery cell +def: "Any kidney arterial blood vessel cell that is part of some renal cortex artery." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001077 is_a: CL:1000891 {is_inferred="true"} ! kidney arterial blood vessel cell @@ -29933,6 +30584,7 @@ relationship: part_of UBERON:0005268 ! renal cortex artery [Term] id: CL:1001052 name: kidney cortex vein cell +def: "Any kidney venous blood vessel cell that is part of some renal cortex vein." [FBC:Autogenerated] xref: KUPO:0001084 is_a: CL:1000893 {is_inferred="true"} ! kidney venous blood vessel cell intersection_of: CL:1000893 ! kidney venous blood vessel cell @@ -29969,6 +30621,7 @@ is_a: CL:1000893 ! kidney venous blood vessel cell [Term] id: CL:1001096 name: kidney afferent arteriole endothelial cell +def: "Any endothelial cell that is part of some renal afferent arteriole." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas xref: KUPO:0001039 @@ -29983,6 +30636,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001097 name: kidney afferent arteriole smooth muscle cell +def: "Any smooth muscle cell that is part of some renal afferent arteriole." [FBC:Autogenerated] xref: KUPO:0001040 is_a: CL:0008035 ! microcirculation associated smooth muscle cell is_a: CL:1001006 ! kidney afferent arteriole cell @@ -29994,6 +30648,7 @@ relationship: part_of UBERON:0004639 ! renal afferent arteriole [Term] id: CL:1001099 name: kidney efferent arteriole endothelial cell +def: "Any endothelial cell that is part of some renal efferent arteriole." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas xref: KUPO:0001042 @@ -30007,6 +30662,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001100 name: kidney efferent arteriole smooth muscle cell +def: "Any smooth muscle cell that is part of some renal efferent arteriole." [FBC:Autogenerated] xref: KUPO:0001043 is_a: CL:0008035 ! microcirculation associated smooth muscle cell is_a: CL:1001009 ! kidney efferent arteriole cell @@ -30088,6 +30744,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001123 name: kidney outer medulla peritubular capillary cell +def: "Any peritubular capillary endothelial cell that is part of some outer renal medulla peritubular capillary." [FBC:Autogenerated] xref: KUPO:0001066 is_a: CL:1000616 {is_inferred="true"} ! kidney outer medulla cell is_a: CL:1001033 {is_inferred="true"} ! peritubular capillary endothelial cell @@ -30098,6 +30755,7 @@ relationship: part_of UBERON:0006341 ! outer renal medulla peritubular capillary [Term] id: CL:1001124 name: kidney cortex peritubular capillary cell +def: "Any peritubular capillary endothelial cell that is part of some renal cortex peritubular capillary." [FBC:Autogenerated] xref: KUPO:0001067 is_a: CL:1001033 {is_inferred="true"} ! peritubular capillary endothelial cell intersection_of: CL:1001033 ! peritubular capillary endothelial cell @@ -30107,6 +30765,7 @@ relationship: part_of UBERON:0006851 ! renal cortex peritubular capillary [Term] id: CL:1001126 name: inner renal medulla vasa recta cell +def: "Any vasa recta cell that is part of some inner renal medulla vasa recta." [FBC:Autogenerated] xref: KUPO:0001069 is_a: CL:1000617 {is_inferred="true"} ! kidney inner medulla cell is_a: CL:1001036 {is_inferred="true"} ! vasa recta cell @@ -30117,6 +30776,7 @@ relationship: part_of UBERON:0004776 ! inner renal medulla vasa recta [Term] id: CL:1001127 name: outer renal medulla vasa recta cell +def: "Any vasa recta cell that is part of some outer renal medulla vasa recta." [FBC:Autogenerated] xref: KUPO:0001070 is_a: CL:1000616 {is_inferred="true"} ! kidney outer medulla cell is_a: CL:1001036 {is_inferred="true"} ! vasa recta cell @@ -30141,6 +30801,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001135 name: arcuate artery cell +def: "Any kidney cortex artery cell that is part of some kidney arcuate artery." [FBC:Autogenerated] xref: KUPO:0001078 is_a: CL:1001045 {is_inferred="true"} ! kidney cortex artery cell intersection_of: CL:1001045 ! kidney cortex artery cell @@ -30150,6 +30811,7 @@ relationship: part_of UBERON:0001552 ! kidney arcuate artery [Term] id: CL:1001138 name: interlobular artery cell +def: "Any kidney cortex artery cell that is part of some interlobular artery." [FBC:Autogenerated] xref: KUPO:0001081 is_a: CL:1001045 {is_inferred="true"} ! kidney cortex artery cell intersection_of: CL:1001045 ! kidney cortex artery cell @@ -30159,6 +30821,7 @@ relationship: part_of UBERON:0004723 ! interlobular artery [Term] id: CL:1001142 name: arcuate vein cell +def: "Any kidney cortex vein cell that is part of some kidney arcuate vein." [FBC:Autogenerated] xref: KUPO:0001085 is_a: CL:1001052 {is_inferred="true"} ! kidney cortex vein cell intersection_of: CL:1001052 ! kidney cortex vein cell @@ -30168,6 +30831,7 @@ relationship: part_of UBERON:0004719 ! kidney arcuate vein [Term] id: CL:1001145 name: interlobular vein cell +def: "Any kidney cortex vein cell that is part of some renal interlobular vein." [FBC:Autogenerated] xref: KUPO:0001088 is_a: CL:1001052 {is_inferred="true"} ! kidney cortex vein cell intersection_of: CL:1001052 ! kidney cortex vein cell @@ -30177,6 +30841,7 @@ relationship: part_of UBERON:0005168 ! renal interlobular vein [Term] id: CL:1001209 name: inner medulla vasa recta ascending limb cell +def: "Any vasa recta ascending limb cell that is part of some inner medulla vasa recta ascending limb." [FBC:Autogenerated] xref: KUPO:0001075 is_a: CL:1001126 {is_inferred="true"} ! inner renal medulla vasa recta cell is_a: CL:1001131 {is_inferred="true"} ! vasa recta ascending limb cell @@ -30187,6 +30852,7 @@ relationship: part_of UBERON:0009092 ! inner medulla vasa recta ascending limb [Term] id: CL:1001210 name: outer medulla vasa recta ascending limb cell +def: "Any vasa recta ascending limb cell that is part of some outer medulla vasa recta ascending limb." [FBC:Autogenerated] xref: KUPO:0001076 is_a: CL:1001127 {is_inferred="true"} ! outer renal medulla vasa recta cell is_a: CL:1001131 {is_inferred="true"} ! vasa recta ascending limb cell @@ -30197,6 +30863,7 @@ relationship: part_of UBERON:0009093 ! outer medulla vasa recta ascending limb [Term] id: CL:1001213 name: arcuate artery endothelial cell +def: "Any endothelial cell that is part of some kidney arcuate artery." [FBC:Autogenerated] xref: KUPO:0001079 is_a: CL:1000413 {is_inferred="true"} ! endothelial cell of artery is_a: CL:1001135 ! arcuate artery cell @@ -30207,6 +30874,7 @@ relationship: part_of UBERON:0001552 ! kidney arcuate artery [Term] id: CL:1001214 name: arcuate artery smooth muscle cell +def: "Any smooth muscle cell that is part of some kidney arcuate artery." [FBC:Autogenerated] xref: KUPO:0001080 is_a: CL:1001064 ! kidney artery smooth muscle cell is_a: CL:1001135 ! arcuate artery cell @@ -30217,6 +30885,7 @@ relationship: part_of UBERON:0001552 ! kidney arcuate artery [Term] id: CL:1001216 name: interlobulary artery endothelial cell +def: "Any endothelial cell that is part of some interlobular artery." [FBC:Autogenerated] xref: KUPO:0001082 is_a: CL:1000413 ! endothelial cell of artery is_a: CL:1001138 ! interlobular artery cell @@ -30227,6 +30896,7 @@ relationship: part_of UBERON:0004723 ! interlobular artery [Term] id: CL:1001217 name: interlobulary artery smooth muscle cell +def: "Any smooth muscle cell that is part of some interlobular artery." [FBC:Autogenerated] xref: KUPO:0001083 is_a: CL:1001064 ! kidney artery smooth muscle cell is_a: CL:1001138 ! interlobular artery cell @@ -30237,6 +30907,7 @@ relationship: part_of UBERON:0004723 ! interlobular artery [Term] id: CL:1001220 name: arcuate vein endothelial cell +def: "Any endothelial cell that is part of some kidney arcuate vein." [FBC:Autogenerated] xref: KUPO:0001086 is_a: CL:0002543 ! vein endothelial cell is_a: CL:1001142 ! arcuate vein cell @@ -30247,6 +30918,7 @@ relationship: part_of UBERON:0004719 ! kidney arcuate vein [Term] id: CL:1001221 name: arcuate vein smooth muscle cell +def: "Any smooth muscle cell that is part of some kidney arcuate vein." [FBC:Autogenerated] xref: KUPO:0001087 is_a: CL:1001068 ! kidney venous system smooth muscle cell is_a: CL:1001142 ! arcuate vein cell @@ -30257,6 +30929,7 @@ relationship: part_of UBERON:0004719 ! kidney arcuate vein [Term] id: CL:1001223 name: interlobulary vein endothelial cell +def: "Any endothelial cell that is part of some renal interlobular vein." [FBC:Autogenerated] xref: KUPO:0001089 is_a: CL:0002543 ! vein endothelial cell is_a: CL:1001145 ! interlobular vein cell @@ -30267,6 +30940,7 @@ relationship: part_of UBERON:0005168 ! renal interlobular vein [Term] id: CL:1001224 name: interlobulary vein smooth muscle cell +def: "Any smooth muscle cell that is part of some renal interlobular vein." [FBC:Autogenerated] xref: KUPO:0001090 is_a: CL:1001068 ! kidney venous system smooth muscle cell is_a: CL:1001145 ! interlobular vein cell @@ -30303,6 +30977,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001286 name: inner medulla vasa recta descending limb cell +def: "Any vasa recta descending limb cell that is part of some inner medulla vasa recta descending limb." [FBC:Autogenerated] xref: KUPO:0001072 is_a: CL:1001126 {is_inferred="true"} ! inner renal medulla vasa recta cell is_a: CL:1001285 {is_inferred="true"} ! vasa recta descending limb cell @@ -30313,6 +30988,7 @@ relationship: part_of UBERON:0009089 ! inner medulla vasa recta descending limb [Term] id: CL:1001287 name: outer medulla vasa recta descending limb cell +def: "Any vasa recta descending limb cell that is part of some outer medulla vasa recta descending limb." [FBC:Autogenerated] xref: KUPO:0001073 is_a: CL:1001127 {is_inferred="true"} ! outer renal medulla vasa recta cell is_a: CL:1001285 {is_inferred="true"} ! vasa recta descending limb cell @@ -30337,6 +31013,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001319 name: bladder cell +def: "Any cell that is part of some urinary bladder." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas xref: KUPO:0001120 @@ -30350,6 +31027,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001320 name: urethra cell +def: "Any cell that is part of some urethra." [FBC:Autogenerated] xref: KUPO:0001123 is_a: CL:1000600 ! lower urinary tract cell is_a: UBERON:0004120 ! mesoderm-derived structure @@ -30378,6 +31056,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:1001430 name: urethra urothelial cell +def: "Any urothelial cell that is part of some urethra urothelium." [FBC:Autogenerated] subset: cellxgene_subset xref: KUPO:0001124 is_a: CL:0000731 {is_inferred="true"} ! urothelial cell @@ -30390,6 +31069,7 @@ relationship: part_of UBERON:0004787 ! urethra urothelium [Term] id: CL:1001431 name: kidney collecting duct principal cell +def: "Any renal principal cell that is part of some collecting duct of renal tubule." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas xref: KUPO:0001128 @@ -30492,6 +31172,7 @@ relationship: part_of UBERON:0001160 ! fundus of stomach [Term] id: CL:1001567 name: lung endothelial cell +def: "Any endothelial cell of vascular tree that is part of some lung." [FBC:Autogenerated] synonym: "endothelial cell of lung" RELATED [] synonym: "pulmonary vessel endothelial cell" RELATED [] is_a: CL:0000082 ! epithelial cell of lung @@ -30505,6 +31186,7 @@ relationship: part_of UBERON:0002048 ! lung [Term] id: CL:1001568 name: pulmonary artery endothelial cell +def: "Any endothelial cell of vascular tree that is part of some pulmonary artery." [FBC:Autogenerated] subset: cellxgene_subset subset: human_reference_atlas synonym: "PAEC cell" RELATED [BTO:0001141] @@ -31219,7 +31901,6 @@ creation_date: 2014-06-04T17:08:47Z id: CL:2000019 name: compound eye photoreceptor cell def: "Any photoreceptor cell that is part of a compound eye." [GOC:TermGenie] -xref: FBbt:00004211 is_a: CL:0000287 ! eye photoreceptor cell intersection_of: CL:0000210 ! photoreceptor cell intersection_of: part_of UBERON:0000018 ! compound eye @@ -31361,6 +32042,7 @@ id: CL:2000032 name: peripheral nervous system neuron def: "A neuron that is part of a peripheral nervous system." [GOC:TermGenie, ISBN:0721662544] subset: cellxgene_subset +subset: human_reference_atlas synonym: "peripheral neuron" EXACT [] synonym: "PNS neuron" EXACT [] xref: FMA:84664 @@ -31369,6 +32051,7 @@ intersection_of: CL:0000540 ! neuron intersection_of: has_soma_location UBERON:0000010 ! peripheral nervous system relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: has_soma_location UBERON:0000010 ! peripheral nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2014-06-25T02:28:17Z [Term] @@ -31470,13 +32153,15 @@ creation_date: 2014-07-09T00:24:53Z [Term] id: CL:2000045 name: foreskin melanocyte -def: "Any melanocyte that is part of a prepuce of penis." [GOC:TermGenie] -is_a: CL:0000148 ! melanocyte +def: "Any melanocyte of skin that is part of a skin of prepuce of penis." [GOC:TermGenie] +synonym: "melanocyte of foreskin" EXACT [] +is_a: CL:1000458 ! melanocyte of skin is_a: UBERON:0004120 ! mesoderm-derived structure -intersection_of: CL:0000148 ! melanocyte -intersection_of: part_of UBERON:0001332 ! prepuce of penis +intersection_of: CL:1000458 ! melanocyte of skin +intersection_of: part_of UBERON:0001471 ! skin of prepuce of penis +relationship: dc-contributor https://orcid.org/0009-0000-8480-9277 relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 -relationship: part_of UBERON:0001332 ! prepuce of penis +relationship: part_of UBERON:0001471 ! skin of prepuce of penis creation_date: 2014-07-09T00:45:07Z [Term] @@ -31648,12 +32333,14 @@ id: CL:2000062 name: placental villus capillary endothelial cell def: "Any capillary endothelial cell that is part of a placenta." [GOC:TermGenie] comment: http://www.ncbi.nlm.nih.gov/books/NBK53245/ +subset: human_reference_atlas is_a: CL:0002144 ! capillary endothelial cell is_a: CL:0009092 ! endothelial cell of placenta intersection_of: CL:0002144 ! capillary endothelial cell intersection_of: part_of UBERON:0010005 ! placental labyrinth villous relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:0010005 ! placental labyrinth villous +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens creation_date: 2014-10-07T17:55:56Z [Term] @@ -31891,18 +32578,6 @@ relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 relationship: part_of UBERON:1000021 ! skin of face creation_date: 2014-12-02T19:10:40Z -[Term] -id: CL:2000082 -name: melanocyte of foreskin -def: "Any melanocyte of skin that is part of a skin of prepuce of penis." [GOC:TermGenie] -is_a: CL:1000458 ! melanocyte of skin -is_a: CL:2000045 ! foreskin melanocyte -intersection_of: CL:1000458 ! melanocyte of skin -intersection_of: part_of UBERON:0001471 ! skin of prepuce of penis -relationship: dc-contributor https://www.wikidata.org/entity/Q35563349 -relationship: part_of UBERON:0001471 ! skin of prepuce of penis -creation_date: 2014-12-02T19:10:45Z - [Term] id: CL:2000083 name: hair follicle dermal papilla cell of scalp @@ -32168,7 +32843,7 @@ property_value: dc-contributor "https://orcid.org/0000-0002-7073-9172" xsd:strin [Term] id: CL:4023038 name: L6b glutamatergic cortical neuron -def: "A glutamatergic neuron with a soma found in cortical layer 6b. They are transcriptomically related to corticothalamic-projecting neurons but have differential projections to the thalamus or anterior cingulate." [DOI:10.1101/2020.10.19.34312, PMID:30382198] +def: "A glutamatergic neuron with a soma found in cortical layer 6b. They are transcriptomically related to corticothalamic-projecting neurons but have differential projections to the thalamus or anterior cingulate." [DOI:10.1101/2020.10.19.34312, PMID:30382198, PMID:37824655] subset: BDS_subset subset: cellxgene_subset xref: ILX:0770163 @@ -32182,6 +32857,7 @@ relationship: has_soma_location UBERON:8440003 ! cortical layer VIb [Term] id: CL:4023039 name: amygdala excitatory neuron +def: "Any neuron that has its soma located in some amygdala and is capable of some glutamate secretion, neurotransmission." [FBC:Autogenerated] comment: An excitatory neuron that is located in the amygdala. {xref="DOI:10.1101/2022.10.12.511898"} subset: human_reference_atlas is_a: CL:0000679 ! glutamatergic neuron @@ -32197,6 +32873,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: CL:4023057 name: cerebellar inhibitory GABAergic interneuron +def: "Any GABAergic interneuron that has its soma located in some cerebellar cortex." [FBC:Autogenerated] comment: A GABAergic interneuron whose soma is located in the cerebellar cortex. {xref="DOI:10.1101/2022.10.12.511898"} subset: human_reference_atlas is_a: CL:0000402 ! CNS interneuron @@ -32468,7 +33145,7 @@ property_value: dcterms-date "2022-07-08T11:39:38Z" xsd:dateTime [Term] id: CL:4030008 name: pronephric podocyte -def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the pronephros." [PMID:10322630] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0002-2244-7917"} +def: "A specialized epithelial cell that contains \"feet\" that interdigitate with the \"feet\" of other glomerular epithelial cells in the pronephros." [PMID:10322630] {terms:contributor="https://orcid.org/0000-0002-2244-7917"} synonym: "pronephric glomerular visceral epithelial cell" EXACT [ZFA:0001673] is_a: CL:0000653 ! podocyte intersection_of: CL:0000653 ! podocyte @@ -32479,7 +33156,7 @@ property_value: dcterms-date "2022-03-11T14:38:32Z" xsd:dateTime [Term] id: CL:4030012 name: kidney loop of Henle short descending thin limb epithelial cell -def: "Epithelial cell of the descending thin limb of the short loop (cortical) nephron limited to the outer medulla (mainly inner strip). It is known in some mammalian species that the short descending limb of the loop of Henle selectively expresses the serine protease Corin, the homeobox TF Uncx, and the urea channel Slc14a2." [PMID:33769951] {http://purl.org/dc/terms/contributor="https://orcid.org/0000-0003-2804-127X"} +def: "Epithelial cell of the descending thin limb of the short loop (cortical) nephron limited to the outer medulla (mainly inner strip). It is known in some mammalian species that the short descending limb of the loop of Henle selectively expresses the serine protease Corin, the homeobox TF Uncx, and the urea channel Slc14a2." [PMID:33769951] {terms:contributor="https://orcid.org/0000-0003-2804-127X"} subset: human_reference_atlas synonym: "epithelial cell of the descending thin limb of the short loop of Henle" EXACT [] is_a: CL:1001111 ! kidney loop of Henle thin descending limb epithelial cell @@ -32721,7 +33398,6 @@ def: "A(n) myoepithelial cell that is part of a(n) bronchus submucosal gland." [ subset: human_reference_atlas is_a: CL:0000185 ! myoepithelial cell is_a: CL:0002328 ! bronchial epithelial cell -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: CL:0000185 ! myoepithelial cell intersection_of: part_of UBERON:8410043 ! bronchus submucosal gland relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -32916,7 +33592,6 @@ def: "A myoepithelial cell that is part of a submucosal gland of the trachea." [ subset: human_reference_atlas is_a: CL:0000185 ! myoepithelial cell is_a: CL:0000307 ! tracheal epithelial cell -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: CL:0000185 ! myoepithelial cell intersection_of: part_of UBERON:0005203 ! trachea gland relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 @@ -33079,12 +33754,14 @@ id: CL:4033064 name: uterine resident macrophage def: "A tissue-resident macrophage that is part of the uterus." [PMID:36113384] comment: Uterine macrophages are reported to be evenly distributed throughout the endometrial stroma but with aggregations observed close to the lumen of superficial secretory glands. {xref="PMID:36113384"} +subset: human_reference_atlas synonym: "uterine macrophage" BROAD [PMID:36113384] is_a: CL:0000864 ! tissue-resident macrophage intersection_of: CL:0000864 ! tissue-resident macrophage intersection_of: part_of UBERON:0000995 ! uterus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0000995 ! uterus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-08T16:05:09Z" xsd:dateTime [Term] @@ -33112,7 +33789,7 @@ synonym: "fetal pre-type II alveolar epithelial cell" EXACT [PMID:12114192] is_a: CL:0000322 ! pneumocyte relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 property_value: dcterms-date "2023-06-02T09:19:31Z" xsd:dateTime -property_value: note "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350)." xsd:string +property_value: oboInOwl:note "According to PMID:1316350 this cell type does not yet produce surfactant. According to PMID:9109447 and PMID:12114192 this cell type produces low levels of surfactant that can be increased by administration of very low-density lipoproteins. This cell type is of medical relevance, as a central feature of the fetal respiratory distress syndrome seems to be the presence in the lung of abundant pre-type II alveolar epithelial cells (PMID:1316350)." xsd:string [Term] id: CL:4040004 @@ -33323,7 +34000,7 @@ id: GO:0000278 name: mitotic cell cycle namespace: biological_process alt_id: GO:0007067 -def: "Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent." [GOC:mah, ISBN:0815316194, Reactome:69278] +def: "Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent." [GOC:mah, ISBN:0815316194] comment: Note that this term should not be confused with 'GO:0140014 ; mitotic nuclear division'. 'GO:0000278 ; mitotic cell cycle represents the entire mitotic cell cycle, while 'GO:0140014 ; mitotic nuclear division' specifically represents the actual nuclear division step of the mitotic cell cycle. subset: goslim_chembl subset: goslim_drosophila @@ -34645,6 +35322,20 @@ intersection_of: occurs_in CL:0000236 ! B cell relationship: occurs_in CL:0000236 ! B cell relationship: part_of GO:0042113 ! B cell activation +[Term] +id: GO:0001770 +name: establishment of natural killer cell polarity +namespace: biological_process +def: "The directed orientation of natural killer cell signaling molecules and associated membrane rafts towards a chemokine gradient or a contact point with a cell displaying natural killer cell activating ligands." [GOC:mgi_curators, PMID:12615886, PMID:9759849] +synonym: "establishment of NK cell polarity" EXACT [] +synonym: "natural killer cell polarization" EXACT [] +synonym: "NK cell polarization" EXACT [] +is_a: GO:0001767 ! establishment of lymphocyte polarity +intersection_of: GO:0030010 ! establishment of cell polarity +intersection_of: occurs_in CL:0000623 ! natural killer cell +relationship: occurs_in CL:0000623 ! natural killer cell +relationship: part_of GO:0030101 ! natural killer cell activation + [Term] id: GO:0001773 name: myeloid dendritic cell activation @@ -34701,6 +35392,20 @@ relationship: acts_on_population_of CL:0000084 ! T cell relationship: part_of GO:0042592 ! homeostatic process relationship: part_of GO:0043029 ! T cell homeostasis +[Term] +id: GO:0001779 +name: natural killer cell differentiation +namespace: biological_process +def: "The process in which a relatively unspecialized cell acquires the specialized features of a natural killer cell." [GOC:add, ISBN:0781735149] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "natural killer cell development" RELATED [GOC:add] +synonym: "NK cell differentiation" EXACT [] +is_a: GO:0030098 ! lymphocyte differentiation +is_a: GO:0030101 ! natural killer cell activation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000623 ! natural killer cell +relationship: results_in_acquisition_of_features_of CL:0000623 ! natural killer cell + [Term] id: GO:0001780 name: neutrophil homeostasis @@ -34775,6 +35480,18 @@ intersection_of: GO:0006915 ! apoptotic process intersection_of: occurs_in CL:0000236 ! B cell relationship: occurs_in CL:0000236 ! B cell +[Term] +id: GO:0001787 +name: natural killer cell proliferation +namespace: biological_process +def: "The expansion of a natural killer cell population by cell division." [GOC:add, ISBN:0781735149] +synonym: "NK cell proliferation" EXACT [] +is_a: GO:0030101 ! natural killer cell activation +is_a: GO:0046651 ! lymphocyte proliferation +intersection_of: GO:0008283 ! cell population proliferation +intersection_of: acts_on_population_of CL:0000623 ! natural killer cell +relationship: acts_on_population_of CL:0000623 ! natural killer cell + [Term] id: GO:0001816 name: cytokine production @@ -35234,6 +35951,185 @@ synonym: "tissue maintenance" NARROW [GOC:add] is_a: GO:0060249 ! anatomical structure homeostasis relationship: part_of GO:0048871 ! multicellular organismal-level homeostasis +[Term] +id: GO:0001906 +name: cell killing +namespace: biological_process +def: "Any process in an organism that results in the killing of its own cells or those of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." [GOC:add] +subset: goslim_pir +synonym: "necrosis" RELATED [] +is_a: GO:0009987 ! cellular process +disjoint_from: GO:0044848 ! biological phase + +[Term] +id: GO:0001909 +name: leukocyte mediated cytotoxicity +namespace: biological_process +def: "The directed killing of a target cell by a leukocyte." [GO_REF:0000022, GOC:add, ISBN:0781735149, PMID:11911826] +comment: Note that this term and its children describe contact-dependent killing of target cells by lymphocytes and myeloid cells of the immune system. +synonym: "immune cell mediated cell death" EXACT [] +synonym: "immune cell mediated cell killing" EXACT [] +synonym: "immune cell mediated cytotoxicity" EXACT [] +synonym: "leucocyte mediated cytotoxicity" EXACT [] +is_a: GO:0001906 ! cell killing +is_a: GO:0002443 ! leukocyte mediated immunity +intersection_of: GO:0001906 ! cell killing +intersection_of: process_has_causal_agent CL:0000738 ! leukocyte +relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata +relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: process_has_causal_agent CL:0000738 ! leukocyte + +[Term] +id: GO:0001910 +name: regulation of leukocyte mediated cytotoxicity +namespace: biological_process +def: "Any process that modulates the frequency, rate, or extent of leukocyte mediated cytotoxicity." [GOC:add, ISBN:0781735149, PMID:11911826] +synonym: "regulation of immune cell mediated cell death" EXACT [] +synonym: "regulation of immune cell mediated cell killing" EXACT [] +synonym: "regulation of immune cell mediated cytotoxicity" EXACT [] +synonym: "regulation of leucocyte mediated cytotoxicity" EXACT [] +is_a: GO:0002703 ! regulation of leukocyte mediated immunity +is_a: GO:0031341 ! regulation of cell killing +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0001909 ! leukocyte mediated cytotoxicity +relationship: regulates GO:0001909 ! leukocyte mediated cytotoxicity + +[Term] +id: GO:0001911 +name: negative regulation of leukocyte mediated cytotoxicity +namespace: biological_process +def: "Any process that stops, prevents, or reduces the rate of leukocyte mediated cytotoxicity." [GOC:add, ISBN:0781735149, PMID:11911826] +synonym: "down regulation of leukocyte mediated cytotoxicity" EXACT [] +synonym: "down-regulation of leukocyte mediated cytotoxicity" EXACT [] +synonym: "downregulation of leukocyte mediated cytotoxicity" EXACT [] +synonym: "inhibition of leukocyte mediated cytotoxicity" NARROW [] +synonym: "negative regulation of immune cell mediated cytotoxicity" EXACT [] +synonym: "negative regulation of leucocyte mediated cytotoxicity" EXACT [] +is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity +is_a: GO:0002704 ! negative regulation of leukocyte mediated immunity +is_a: GO:0031342 ! negative regulation of cell killing +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0001909 ! leukocyte mediated cytotoxicity +relationship: negatively_regulates GO:0001909 ! leukocyte mediated cytotoxicity + +[Term] +id: GO:0001912 +name: positive regulation of leukocyte mediated cytotoxicity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of leukocyte mediated cytotoxicity." [GOC:add, ISBN:0781735149, PMID:11911826] +synonym: "activation of leukocyte mediated cytotoxicity" NARROW [] +synonym: "positive regulation of immune cell mediated cytotoxicity" EXACT [] +synonym: "positive regulation of leucocyte mediated cytotoxicity" EXACT [] +synonym: "stimulation of leukocyte mediated cytotoxicity" NARROW [] +synonym: "up regulation of leukocyte mediated cytotoxicity" EXACT [] +synonym: "up-regulation of leukocyte mediated cytotoxicity" EXACT [] +synonym: "upregulation of leukocyte mediated cytotoxicity" EXACT [] +is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity +is_a: GO:0002705 ! positive regulation of leukocyte mediated immunity +is_a: GO:0031343 ! positive regulation of cell killing +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0001909 ! leukocyte mediated cytotoxicity +relationship: positively_regulates GO:0001909 ! leukocyte mediated cytotoxicity + +[Term] +id: GO:0001913 +name: T cell mediated cytotoxicity +namespace: biological_process +def: "The directed killing of a target cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors." [GOC:add, GOC:pr, ISBN:0781735149, PMID:11911826] +comment: Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in the induction of apoptosis in the target cell. Note that both CD4 and CD8 positive T cells can mediate apoptosis of target cells, independently of their definition as 'helper' T cells or not. +synonym: "T cell mediated apoptosis" EXACT [] +synonym: "T cell mediated cell death" EXACT [] +synonym: "T cell mediated cell killing" EXACT [] +synonym: "T cell mediated cytolysis" RELATED [] +synonym: "T lymphocyte mediated cytotoxicity" EXACT [] +synonym: "T-cell mediated apoptosis" EXACT [] +synonym: "T-cell mediated cell death" EXACT [] +synonym: "T-cell mediated cell killing" EXACT [] +synonym: "T-cell mediated cytotoxicity" EXACT [] +synonym: "T-lymphocyte mediated cytotoxicity" EXACT [] +is_a: GO:0001909 ! leukocyte mediated cytotoxicity +is_a: GO:0002456 ! T cell mediated immunity +intersection_of: GO:0001906 ! cell killing +intersection_of: process_has_causal_agent CL:0000084 ! T cell +relationship: process_has_causal_agent CL:0000084 ! T cell + +[Term] +id: GO:0001914 +name: regulation of T cell mediated cytotoxicity +namespace: biological_process +def: "Any process that modulates the frequency, rate, or extent of T cell mediated cytotoxicity." [GOC:add, ISBN:0781735149] +synonym: "regulation of T cell mediated apoptosis" EXACT [] +synonym: "regulation of T cell mediated cell death" EXACT [] +synonym: "regulation of T cell mediated cell killing" EXACT [] +synonym: "regulation of T cell mediated cytolysis" RELATED [] +synonym: "regulation of T lymphocyte mediated cytotoxicity" EXACT [] +synonym: "regulation of T-cell mediated apoptosis" EXACT [] +synonym: "regulation of T-cell mediated cell death" EXACT [] +synonym: "regulation of T-cell mediated cell killing" EXACT [] +synonym: "regulation of T-cell mediated cytolysis" RELATED [] +synonym: "regulation of T-cell mediated cytotoxicity" EXACT [] +synonym: "regulation of T-lymphocyte mediated cytotoxicity" EXACT [] +is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity +is_a: GO:0002709 ! regulation of T cell mediated immunity +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0001913 ! T cell mediated cytotoxicity +relationship: regulates GO:0001913 ! T cell mediated cytotoxicity + +[Term] +id: GO:0001915 +name: negative regulation of T cell mediated cytotoxicity +namespace: biological_process +def: "Any process that stops, prevents, or reduces the rate of T cell mediated cytotoxicity." [GOC:add, ISBN:0781735149] +synonym: "down regulation of T cell mediated cytotoxicity" EXACT [] +synonym: "down-regulation of T cell mediated cytotoxicity" EXACT [] +synonym: "downregulation of T cell mediated cytotoxicity" EXACT [] +synonym: "inhibition of T cell mediated cytotoxicity" NARROW [] +synonym: "negative regulation of T cell mediated apoptosis" EXACT [] +synonym: "negative regulation of T cell mediated cell death" EXACT [] +synonym: "negative regulation of T cell mediated cell killing" EXACT [] +synonym: "negative regulation of T cell mediated cytolysis" RELATED [] +synonym: "negative regulation of T lymphocyte mediated cytotoxicity" EXACT [] +synonym: "negative regulation of T-cell mediated apoptosis" EXACT [] +synonym: "negative regulation of T-cell mediated cell death" EXACT [] +synonym: "negative regulation of T-cell mediated cell killing" EXACT [] +synonym: "negative regulation of T-cell mediated cytolysis" RELATED [] +synonym: "negative regulation of T-cell mediated cytotoxicity" EXACT [] +synonym: "negative regulation of T-lymphocyte mediated cytotoxicity" EXACT [] +is_a: GO:0001911 ! negative regulation of leukocyte mediated cytotoxicity +is_a: GO:0001914 ! regulation of T cell mediated cytotoxicity +is_a: GO:0002710 ! negative regulation of T cell mediated immunity +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0001913 ! T cell mediated cytotoxicity +relationship: negatively_regulates GO:0001913 ! T cell mediated cytotoxicity + +[Term] +id: GO:0001916 +name: positive regulation of T cell mediated cytotoxicity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity." [GOC:add, ISBN:0781735149] +synonym: "activation of T cell mediated cytotoxicity" NARROW [] +synonym: "positive regulation of T cell mediated apoptosis" EXACT [] +synonym: "positive regulation of T cell mediated cell death" EXACT [] +synonym: "positive regulation of T cell mediated cell killing" EXACT [] +synonym: "positive regulation of T cell mediated cytolysis" RELATED [] +synonym: "positive regulation of T lymphocyte mediated cytotoxicity" EXACT [] +synonym: "positive regulation of T-cell mediated apoptosis" EXACT [] +synonym: "positive regulation of T-cell mediated cell death" EXACT [] +synonym: "positive regulation of T-cell mediated cell killing" EXACT [] +synonym: "positive regulation of T-cell mediated cytolysis" RELATED [] +synonym: "positive regulation of T-cell mediated cytotoxicity" EXACT [] +synonym: "positive regulation of T-lymphocyte mediated cytotoxicity" EXACT [] +synonym: "stimulation of T cell mediated cytotoxicity" NARROW [] +synonym: "up regulation of T cell mediated cytotoxicity" EXACT [] +synonym: "up-regulation of T cell mediated cytotoxicity" EXACT [] +synonym: "upregulation of T cell mediated cytotoxicity" EXACT [] +is_a: GO:0001912 ! positive regulation of leukocyte mediated cytotoxicity +is_a: GO:0001914 ! regulation of T cell mediated cytotoxicity +is_a: GO:0002711 ! positive regulation of T cell mediated immunity +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0001913 ! T cell mediated cytotoxicity +relationship: positively_regulates GO:0001913 ! T cell mediated cytotoxicity + [Term] id: GO:0001917 name: photoreceptor inner segment @@ -35244,6 +36140,90 @@ is_a: GO:0110165 ! cellular anatomical entity relationship: part_of CL:0000210 ! photoreceptor cell relationship: part_of CL:0000540 ! neuron +[Term] +id: GO:0001922 +name: B-1 B cell homeostasis +namespace: biological_process +def: "The process of regulating the proliferation and elimination of B cells of the B-1 subset such that the total number of B-1 B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity." [GOC:add, ISBN:0781735149] +comment: Note that this term represents the return of B-1 B cell levels to stable numbers following an immune response, as well as the proliferation and elimination of B-1 B cells in a organism required to maintain stable numbers in the absence of an outside stimulus. +synonym: "B-1 B lymphocyte homeostasis" EXACT [] +synonym: "B-1 B-cell homeostasis" EXACT [] +synonym: "B-1 B-lymphocyte homeostasis" EXACT [] +is_a: GO:0001782 ! B cell homeostasis +intersection_of: GO:0048872 ! homeostasis of number of cells +intersection_of: acts_on_population_of CL:0000819 ! B-1 B cell +relationship: acts_on_population_of CL:0000819 ! B-1 B cell + +[Term] +id: GO:0001923 +name: B-1 B cell differentiation +namespace: biological_process +def: "The process in which a hemopoietic stem cell acquires the specialized features of a B-1 B cell. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity." [GOC:add, ISBN:0781735149] +synonym: "B-1 B cell development" RELATED [GOC:add] +synonym: "B-1 B lymphocyte differentiation" EXACT [] +synonym: "B-1 B-cell differentiation" EXACT [] +synonym: "B-1 B-lymphocyte differentiation" EXACT [] +is_a: GO:0002335 ! mature B cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000819 ! B-1 B cell +relationship: results_in_acquisition_of_features_of CL:0000819 ! B-1 B cell + +[Term] +id: GO:0001924 +name: regulation of B-1 B cell differentiation +namespace: biological_process +def: "Any process that modulates the frequency, rate, or extent of B-1 B cell differentiation. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity." [GOC:add, ISBN:0781735149] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "regulation of B-1 B cell development" RELATED [GOC:add] +synonym: "regulation of B-1 B lymphocyte differentiation" EXACT [] +synonym: "regulation of B-1 B-cell differentiation" EXACT [] +synonym: "regulation of B-1 B-lymphocyte differentiation" EXACT [] +is_a: GO:0045577 ! regulation of B cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0001923 ! B-1 B cell differentiation +relationship: regulates GO:0001923 ! B-1 B cell differentiation + +[Term] +id: GO:0001925 +name: negative regulation of B-1 B cell differentiation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the rate of B-1 B cell differentiation." [GOC:add, ISBN:0781735149] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "down regulation of B-1 B cell differentiation" EXACT [] +synonym: "down-regulation of B-1 B cell differentiation" EXACT [] +synonym: "downregulation of B-1 B cell differentiation" EXACT [] +synonym: "inhibition of B-1 B cell differentiation" NARROW [] +synonym: "negative regulation of B-1 B cell development" RELATED [GOC:add] +synonym: "negative regulation of B-1 B lymphocyte differentiation" EXACT [] +synonym: "negative regulation of B-1 B-cell differentiation" EXACT [] +synonym: "negative regulation of B-1 B-lymphocyte differentiation" EXACT [] +is_a: GO:0001924 ! regulation of B-1 B cell differentiation +is_a: GO:0045578 ! negative regulation of B cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0001923 ! B-1 B cell differentiation +relationship: negatively_regulates GO:0001923 ! B-1 B cell differentiation + +[Term] +id: GO:0001926 +name: positive regulation of B-1 B cell differentiation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of B-1 B cell differentiation." [GOC:add, ISBN:0781735149] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "activation of B-1 B cell differentiation" NARROW [] +synonym: "positive regulation of B-1 B cell development" RELATED [GOC:add] +synonym: "positive regulation of B-1 B lymphocyte differentiation" EXACT [] +synonym: "positive regulation of B-1 B-cell differentiation" EXACT [] +synonym: "positive regulation of B-1 B-lymphocyte differentiation" EXACT [] +synonym: "stimulation of B-1 B cell differentiation" NARROW [] +synonym: "up regulation of B-1 B cell differentiation" EXACT [] +synonym: "up-regulation of B-1 B cell differentiation" EXACT [] +synonym: "upregulation of B-1 B cell differentiation" EXACT [] +is_a: GO:0001924 ! regulation of B-1 B cell differentiation +is_a: GO:0045579 ! positive regulation of B cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0001923 ! B-1 B cell differentiation +relationship: positively_regulates GO:0001923 ! B-1 B cell differentiation + [Term] id: GO:0001932 name: regulation of protein phosphorylation @@ -36304,6 +37284,31 @@ intersection_of: positively_regulates GO:0002775 ! antimicrobial peptide product relationship: positively_regulates GO:0002775 ! antimicrobial peptide production relationship: positively_regulates GO:0019730 ! antimicrobial humoral response +[Term] +id: GO:0002227 +name: innate immune response in mucosa +namespace: biological_process +def: "Any process of the innate immune response that takes place in the mucosal tissues." [GOC:add, PMID:10719665, PMID:15971105] +is_a: GO:0002385 ! mucosal immune response +is_a: GO:0045087 ! innate immune response +intersection_of: GO:0045087 ! innate immune response +intersection_of: occurs_in UBERON:0000344 ! mucosa +relationship: in_taxon NCBITaxon:7711 {all_only="true"} ! Chordata +relationship: occurs_in UBERON:0000344 ! mucosa +relationship: only_in_taxon NCBITaxon:7711 ! Chordata + +[Term] +id: GO:0002228 +name: natural killer cell mediated immunity +namespace: biological_process +def: "The promotion of an immune response by natural killer cells through direct recognition of target cells or through the release of cytokines." [GO_REF:0000022, GOC:add, ISBN:0781735149] +synonym: "NK cell mediated immunity" EXACT [] +is_a: GO:0002449 ! lymphocyte mediated immunity +is_a: GO:0045087 ! innate immune response +intersection_of: GO:0002376 ! immune system process +intersection_of: process_has_causal_agent CL:0000623 ! natural killer cell +relationship: process_has_causal_agent CL:0000623 ! natural killer cell + [Term] id: GO:0002232 name: leukocyte chemotaxis involved in inflammatory response @@ -36721,6 +37726,16 @@ intersection_of: GO:0030154 ! cell differentiation intersection_of: results_in_acquisition_of_features_of CL:0000838 ! lymphoid lineage restricted progenitor cell relationship: results_in_acquisition_of_features_of CL:0000838 ! lymphoid lineage restricted progenitor cell +[Term] +id: GO:0002321 +name: natural killer cell progenitor differentiation +namespace: biological_process +def: "The process in which a precursor cell type acquires the specialized features of a natural killer cell progenitor." [GOC:add, PMID:16551251, PMID:16551264] +is_a: GO:0002320 ! lymphoid progenitor cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000825 ! pro-NK cell +relationship: results_in_acquisition_of_features_of CL:0000825 ! pro-NK cell + [Term] id: GO:0002322 name: B cell proliferation involved in immune response @@ -36736,6 +37751,47 @@ intersection_of: GO:0042100 ! B cell proliferation intersection_of: part_of GO:0006955 ! immune response relationship: part_of GO:0006955 ! immune response +[Term] +id: GO:0002323 +name: natural killer cell activation involved in immune response +namespace: biological_process +def: "The change in morphology and behavior of a natural killer cell resulting from exposure a cytokine, chemokine, cellular ligand, or soluble factor, leading to the initiation or perpetuation of an immune response." [GOC:add, PMID:15032583] +synonym: "natural killer cell activation during immune response" RELATED [GOC:tb] +synonym: "NK cell activation during immune response" RELATED [] +is_a: GO:0002285 ! lymphocyte activation involved in immune response +is_a: GO:0030101 ! natural killer cell activation +intersection_of: GO:0030101 ! natural killer cell activation +intersection_of: part_of GO:0006955 ! immune response +relationship: part_of GO:0006955 ! immune response + +[Term] +id: GO:0002324 +name: natural killer cell proliferation involved in immune response +namespace: biological_process +def: "The expansion of a natural killer cell population by cell division as part of an immune response." [GOC:add, PMID:15032583] +synonym: "natural killer cell proliferation during immune response" RELATED [GOC:tb] +synonym: "NK cell proliferation during immune response" RELATED [] +is_a: GO:0001787 ! natural killer cell proliferation +is_a: GO:0002323 ! natural killer cell activation involved in immune response +intersection_of: GO:0001787 ! natural killer cell proliferation +intersection_of: part_of GO:0006955 ! immune response +relationship: part_of GO:0006955 ! immune response + +[Term] +id: GO:0002325 +name: natural killer cell differentiation involved in immune response +namespace: biological_process +def: "The process in which a naive natural killer cell acquires the specialized features of an effector natural killer T cell as part of an immune response." [GOC:add, PMID:11698225] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "natural killer cell development involved in immune response" RELATED [GOC:add] +synonym: "natural killer cell differentiation during immune response" RELATED [GOC:tb] +synonym: "NK cell differentiation during immune response" RELATED [] +is_a: GO:0001779 ! natural killer cell differentiation +is_a: GO:0002323 ! natural killer cell activation involved in immune response +intersection_of: GO:0001779 ! natural killer cell differentiation +intersection_of: part_of GO:0006955 ! immune response +relationship: part_of GO:0006955 ! immune response + [Term] id: GO:0002327 name: immature B cell differentiation @@ -36806,6 +37862,36 @@ intersection_of: GO:0030154 ! cell differentiation intersection_of: results_in_acquisition_of_features_of CL:0000785 ! mature B cell relationship: results_in_acquisition_of_features_of CL:0000785 ! mature B cell +[Term] +id: GO:0002337 +name: B-1a B cell differentiation +namespace: biological_process +def: "The process in which B cells acquire the specialized features of B-1a B cells. B-1a B cells are B-1 cells that express CD5 and arise from fetal liver precursors." [GOC:jal, ISBN:0781735149] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "B-1a B cell development" RELATED [GOC:add] +synonym: "B-1a B lymphocyte differentiation" EXACT [] +synonym: "B-1a B-cell differentiation" EXACT [] +synonym: "B-1a B-lymphocyte differentiation" EXACT [] +is_a: GO:0001923 ! B-1 B cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000820 ! B-1a B cell +relationship: results_in_acquisition_of_features_of CL:0000820 ! B-1a B cell + +[Term] +id: GO:0002338 +name: B-1b B cell differentiation +namespace: biological_process +def: "The process in which B cells acquire the specialized features of B-1b B cells. B-1b B cells are B-1 cells that do not express CD5." [GOC:jal, ISBN:0781735149] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "B-1b B cell development" RELATED [GOC:add] +synonym: "B-1b B lymphocyte differentiation" EXACT [] +synonym: "B-1b B-cell differentiation" EXACT [] +synonym: "B-1b B-lymphocyte differentiation" EXACT [] +is_a: GO:0001923 ! B-1 B cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000821 ! B-1b B cell +relationship: results_in_acquisition_of_features_of CL:0000821 ! B-1b B cell + [Term] id: GO:0002339 name: B cell selection @@ -36870,6 +37956,19 @@ intersection_of: part_of GO:0042592 ! homeostatic process relationship: acts_on_population_of CL:0000236 ! B cell relationship: part_of GO:0042592 ! homeostatic process +[Term] +id: GO:0002359 +name: B-1 B cell proliferation +namespace: biological_process +def: "The expansion of a B-1 B cell by cell division. Follows B cell activation." [GOC:jal] +synonym: "B-1 B lymphocyte proliferation" EXACT [] +synonym: "B-1 B-cell proliferation" EXACT [] +synonym: "B-1 B-lymphocyte proliferation" EXACT [] +is_a: GO:0042100 ! B cell proliferation +intersection_of: GO:0008283 ! cell population proliferation +intersection_of: acts_on_population_of CL:0000819 ! B-1 B cell +relationship: acts_on_population_of CL:0000819 ! B-1 B cell + [Term] id: GO:0002366 name: leukocyte activation involved in immune response @@ -36935,6 +38034,20 @@ intersection_of: GO:0001816 ! cytokine production intersection_of: process_has_causal_agent CL:0000084 ! T cell relationship: process_has_causal_agent CL:0000084 ! T cell +[Term] +id: GO:0002370 +name: natural killer cell cytokine production +namespace: biological_process +def: "Any process that contributes to cytokine production by a natural killer cell." [GOC:add, ISBN:0781735149] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select one of the 'regulation' children terms. +subset: gocheck_do_not_annotate +synonym: "NK cell cytokine production" EXACT [] +is_a: GO:0002228 ! natural killer cell mediated immunity +is_a: GO:0002367 ! cytokine production involved in immune response +intersection_of: GO:0001816 ! cytokine production +intersection_of: process_has_causal_agent CL:0000623 ! natural killer cell +relationship: process_has_causal_agent CL:0000623 ! natural killer cell + [Term] id: GO:0002371 name: dendritic cell cytokine production @@ -37026,6 +38139,18 @@ relationship: in_taxon NCBITaxon:7742 {all_only="true"} ! Vertebrata +[Term] +id: GO:0002385 +name: mucosal immune response +namespace: biological_process +alt_id: GO:0002386 +alt_id: GO:0002422 +def: "An immune response taking place in mucosal tissues, including those of the intestinal tract, nasal and upper respiratory tract, and genital tract." [GO_REF:0000022, GOC:jal, ISBN:0781735149] +synonym: "immune response in MALT" NARROW [] +synonym: "immune response in mucosal-associated lymphoid tissue" NARROW [] +synonym: "immune response in urogenital tract" NARROW [] +is_a: GO:0002251 ! organ or tissue specific immune response + [Term] id: GO:0002387 name: immune response in gut-associated lymphoid tissue @@ -38594,6 +39719,61 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0019724 ! B cell mediated immunity relationship: positively_regulates GO:0019724 ! B cell mediated immunity +[Term] +id: GO:0002715 +name: regulation of natural killer cell mediated immunity +namespace: biological_process +alt_id: GO:0045845 +def: "Any process that modulates the frequency, rate, or extent of natural killer cell mediated immunity." [GOC:add] +synonym: "regulation of natural killer cell activity" RELATED [] +synonym: "regulation of NK cell mediated immunity" EXACT [] +is_a: GO:0002706 ! regulation of lymphocyte mediated immunity +is_a: GO:0045088 ! regulation of innate immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0002228 ! natural killer cell mediated immunity +relationship: regulates GO:0002228 ! natural killer cell mediated immunity + +[Term] +id: GO:0002716 +name: negative regulation of natural killer cell mediated immunity +namespace: biological_process +alt_id: GO:0030102 +def: "Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell mediated immunity." [GOC:add] +synonym: "down regulation of natural killer cell mediated immunity" EXACT [] +synonym: "down-regulation of natural killer cell mediated immunity" EXACT [] +synonym: "downregulation of natural killer cell mediated immunity" EXACT [] +synonym: "inhibition of natural killer cell mediated immunity" NARROW [] +synonym: "negative regulation of natural killer cell activity" RELATED [] +synonym: "negative regulation of NK cell activity" RELATED [] +synonym: "negative regulation of NK cell mediated immunity" EXACT [] +is_a: GO:0002707 ! negative regulation of lymphocyte mediated immunity +is_a: GO:0002715 ! regulation of natural killer cell mediated immunity +is_a: GO:0045824 ! negative regulation of innate immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0002228 ! natural killer cell mediated immunity +relationship: negatively_regulates GO:0002228 ! natural killer cell mediated immunity + +[Term] +id: GO:0002717 +name: positive regulation of natural killer cell mediated immunity +namespace: biological_process +alt_id: GO:0045846 +def: "Any process that activates or increases the frequency, rate, or extent of natural killer cell mediated immunity." [GOC:add] +synonym: "activation of natural killer cell mediated immunity" NARROW [] +synonym: "positive regulation of natural killer cell activity" RELATED [] +synonym: "positive regulation of NK cell activity" RELATED [] +synonym: "positive regulation of NK cell mediated immunity" EXACT [] +synonym: "stimulation of natural killer cell mediated immunity" NARROW [] +synonym: "up regulation of natural killer cell mediated immunity" EXACT [] +synonym: "up-regulation of natural killer cell mediated immunity" EXACT [] +synonym: "upregulation of natural killer cell mediated immunity" EXACT [] +is_a: GO:0002708 ! positive regulation of lymphocyte mediated immunity +is_a: GO:0002715 ! regulation of natural killer cell mediated immunity +is_a: GO:0045089 ! positive regulation of innate immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0002228 ! natural killer cell mediated immunity +relationship: positively_regulates GO:0002228 ! natural killer cell mediated immunity + [Term] id: GO:0002718 name: regulation of cytokine production involved in immune response @@ -38759,6 +39939,53 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0002369 ! T cell cytokine production relationship: positively_regulates GO:0002369 ! T cell cytokine production +[Term] +id: GO:0002727 +name: regulation of natural killer cell cytokine production +namespace: biological_process +def: "Any process that modulates the frequency, rate, or extent of natural killer cell cytokine production." [GOC:add] +synonym: "regulation of NK cell cytokine production" EXACT [] +is_a: GO:0002715 ! regulation of natural killer cell mediated immunity +is_a: GO:0002718 ! regulation of cytokine production involved in immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0002370 ! natural killer cell cytokine production +relationship: regulates GO:0002370 ! natural killer cell cytokine production + +[Term] +id: GO:0002728 +name: negative regulation of natural killer cell cytokine production +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell cytokine production." [GOC:add] +synonym: "down regulation of natural killer cell cytokine production" EXACT [] +synonym: "down-regulation of natural killer cell cytokine production" EXACT [] +synonym: "downregulation of natural killer cell cytokine production" EXACT [] +synonym: "inhibition of natural killer cell cytokine production" NARROW [] +synonym: "negative regulation of NK cell cytokine production" EXACT [] +is_a: GO:0002716 ! negative regulation of natural killer cell mediated immunity +is_a: GO:0002719 ! negative regulation of cytokine production involved in immune response +is_a: GO:0002727 ! regulation of natural killer cell cytokine production +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0002370 ! natural killer cell cytokine production +relationship: negatively_regulates GO:0002370 ! natural killer cell cytokine production + +[Term] +id: GO:0002729 +name: positive regulation of natural killer cell cytokine production +namespace: biological_process +def: "Any process that activates or increases the frequency, rate, or extent of natural killer cell cytokine production." [GOC:add] +synonym: "activation of natural killer cell cytokine production" NARROW [] +synonym: "positive regulation of NK cell cytokine production" EXACT [] +synonym: "stimulation of natural killer cell cytokine production" NARROW [] +synonym: "up regulation of natural killer cell cytokine production" EXACT [] +synonym: "up-regulation of natural killer cell cytokine production" EXACT [] +synonym: "upregulation of natural killer cell cytokine production" EXACT [] +is_a: GO:0002717 ! positive regulation of natural killer cell mediated immunity +is_a: GO:0002720 ! positive regulation of cytokine production involved in immune response +is_a: GO:0002727 ! regulation of natural killer cell cytokine production +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0002370 ! natural killer cell cytokine production +relationship: positively_regulates GO:0002370 ! natural killer cell cytokine production + [Term] id: GO:0002730 name: regulation of dendritic cell cytokine production @@ -39808,7 +41035,7 @@ relationship: part_of GO:0003091 ! renal water homeostasis id: GO:0003104 name: positive regulation of glomerular filtration namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of glomerular filtration. Glomerular filtration is the processs whereby blood is filtered by the glomerulus into the renal tubule." [GOC:mtg_cardio] +def: "Any process that activates or increases the frequency, rate or extent of glomerular filtration. Glomerular filtration is the process whereby blood is filtered by the glomerulus into the renal tubule." [GOC:mtg_cardio] is_a: GO:0003093 ! regulation of glomerular filtration is_a: GO:0051240 ! positive regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation @@ -39819,7 +41046,7 @@ relationship: positively_regulates GO:0003094 ! glomerular filtration id: GO:0003105 name: negative regulation of glomerular filtration namespace: biological_process -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of glomerular filtration. Glomerular filtration is the processs whereby blood is filtered by the glomerulus into the renal tubule." [GOC:mtg_cardio] +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of glomerular filtration. Glomerular filtration is the process whereby blood is filtered by the glomerulus into the renal tubule." [GOC:mtg_cardio] is_a: GO:0003093 ! regulation of glomerular filtration is_a: GO:0051241 ! negative regulation of multicellular organismal process intersection_of: GO:0065007 ! biological regulation @@ -42467,9 +43694,8 @@ name: nuclear steroid receptor activity namespace: molecular_function def: "Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function." [GOC:signaling, PMID:14708019] synonym: "steroid hormone receptor activity" BROAD [] -is_a: GO:0000981 ! DNA-binding transcription factor activity, RNA polymerase II-specific -is_a: GO:0038023 ! signaling receptor activity -relationship: part_of GO:0043401 ! steroid hormone mediated signaling pathway +is_a: GO:0004879 ! nuclear receptor activity +relationship: part_of GO:0043401 ! steroid hormone receptor signaling pathway property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16717" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26957" xsd:anyURI @@ -43028,6 +44254,51 @@ xref: Reactome:R-HSA-8987255 "IL26:IL10RB:p-TYK2:IL20RA:p-JAK1:STAT1,STAT3 phos is_a: GO:0004713 ! protein tyrosine kinase activity is_a: GO:0019199 ! transmembrane receptor protein kinase activity +[Term] +id: GO:0004879 +name: nuclear receptor activity +namespace: molecular_function +alt_id: GO:0003708 +alt_id: GO:0004880 +alt_id: GO:0004882 +alt_id: GO:0004884 +alt_id: GO:0004886 +alt_id: GO:0004887 +alt_id: GO:0008434 +alt_id: GO:0038050 +alt_id: GO:0038051 +alt_id: GO:0038052 +def: "A DNA-binding transcription factor activity regulated by binding to a ligand that modulates the transcription of specific gene sets transcribed by RNA polymerase II. Nuclear receptor ligands are usually lipid-based (such as a steroid hormone) and the binding of the ligand to its receptor often occurs in the cytosol, which leads to its translocation to the nucleus." [GOC:txnOH-2018, PMID:23457262] +comment: Usage guidance: Nuclear receptors are a protein family defined by the presence of a C4-type zinc finger DNA-binding domain and a ligand binding domain. For nuclear receptors, the DNA binding motif is most often referred to as a response element. GO:0004879 is intended for annotation of nuclear receptors that regulate transcription by binding directly to DNA. When the nuclear receptor functions by binding to other transcription factors or transcription factor complexes, consider instead annotating to 'GO:0030374 ; nuclear receptor transcription coactivator activity' or GO:0140536 ; nuclear corepressor activity. +synonym: "1,25-(OH)2D3 receptor activity" NARROW [Wikipedia:Calcitriol] +synonym: "9-cis retinoic acid receptor activity" NARROW [] +synonym: "androgen receptor activity" NARROW [] +synonym: "calcitriol receptor activity" NARROW [] +synonym: "ecdysteroid hormone receptor activity" NARROW [] +synonym: "estrogen nuclear receptor activity" NARROW [GOC:bf] +synonym: "glucocorticoid receptor activity" NARROW [GOC:bf] +synonym: "juvenile hormone receptor activity" NARROW [] +synonym: "ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity" EXACT [] +synonym: "ligand-dependent nuclear receptor activity" RELATED [GOC:bf] +synonym: "ligand-dependent transcription factor activity" RELATED [GOC:bf] +synonym: "nuclear hormone receptor" NARROW [] +synonym: "retinoic acid receptor activity" NARROW [] +synonym: "retinoid-X receptor activity" NARROW [GOC:bf] +synonym: "RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding" NARROW [] +synonym: "RNA polymerase II transcription factor activity, glucocorticoid-activated sequence-specific DNA binding" NARROW [] +synonym: "RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding" EXACT [] +synonym: "RXR" NARROW [] +synonym: "thyroid hormone receptor activity" NARROW [] +synonym: "vitamin A receptor activity" NARROW [] +synonym: "vitamin D receptor activity" NARROW [] +synonym: "vitamin D3 receptor activity" NARROW [GOC:bf, Wikipedia:Calcitriol_receptor] +is_a: GO:0000981 ! DNA-binding transcription factor activity, RNA polymerase II-specific +is_a: GO:0038023 ! signaling receptor activity +is_a: GO:0098531 ! ligand-activated transcription factor activity +relationship: part_of GO:0030522 ! intracellular receptor signaling pathway +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/19518" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/20253" xsd:anyURI + [Term] id: GO:0004883 name: nuclear glucocorticoid receptor activity @@ -43038,7 +44309,7 @@ is_a: GO:0003707 ! nuclear steroid receptor activity intersection_of: GO:0038023 ! signaling receptor activity intersection_of: has_primary_input CHEBI:24261 ! glucocorticoid relationship: has_primary_input CHEBI:24261 ! glucocorticoid -relationship: part_of GO:0042921 ! intracellular glucocorticoid receptor signaling pathway +relationship: part_of GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway relationship: part_of GO:0043402 ! glucocorticoid mediated signaling pathway property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/16717" xsd:anyURI @@ -43090,7 +44361,7 @@ alt_id: GO:0001623 alt_id: GO:0001624 alt_id: GO:0001625 alt_id: GO:0016526 -def: "Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:bf, http://www.iuphar-db.org, Wikipedia:GPCR] +def: "Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex." [GOC:bf, Wikipedia:GPCR] subset: goslim_chembl synonym: "EBV-induced receptor" NARROW [] synonym: "Epstein-Barr Virus-induced receptor activity" NARROW [] @@ -43298,7 +44569,7 @@ id: GO:0005215 name: transporter activity namespace: molecular_function alt_id: GO:0005478 -def: "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." [GOC:ai, GOC:dgf] +def: "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, accross or in between cells." [GOC:ai, GOC:dgf] comment: Some transporters, such as certain members of the SLC family, are referred to as 'carriers'; however GO uses carrier with a different meaning: a carrier binds to and transports the substance (see GO:0140104 molecular carrier activity), whereas a transporter forms some pore that allows the passing of molecules. subset: gocheck_do_not_annotate subset: goslim_agr @@ -43316,6 +44587,7 @@ subset: goslim_prokaryote subset: goslim_prokaryote_ribbon synonym: "carrier" RELATED [] is_a: GO:0003674 ! molecular_function +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27621" xsd:anyURI [Term] id: GO:0005275 @@ -43589,7 +44861,6 @@ name: binding namespace: molecular_function def: "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732] comment: Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. -subset: gocheck_do_not_annotate subset: goslim_pir subset: goslim_plant synonym: "ligand" NARROW [] @@ -43699,9 +44970,10 @@ relationship: has_primary_input CHEBI:30616 ! ATP(4-) [Term] id: GO:0005536 -name: glucose binding +name: D-glucose binding namespace: molecular_function -def: "Binding to D- or L-enantiomers of glucose." [GOC:jl] +def: "Binding to D-enantiomers of glucose." [GOC:jl] +synonym: "glucose binding" BROAD [] is_a: GO:0048029 ! monosaccharide binding intersection_of: GO:0005488 ! binding intersection_of: has_primary_input CHEBI:4167 ! D-glucopyranose @@ -44171,6 +45443,19 @@ synonym: "vesicular component" RELATED [NIF_Subcellular:sao138219748] xref: NIF_Subcellular:sao819927218 is_a: GO:0031410 ! cytoplasmic vesicle +[Term] +id: GO:0005811 +name: lipid droplet +namespace: cellular_component +def: "An intracellular non-membrane-bounded organelle comprising a matrix of coalesced lipids surrounded by a phospholipid monolayer. May include associated proteins." [GOC:mah, GOC:tb] +comment: Note that this term does not refer to vesicles, but instead to structures in which lipids do not necessarily form bilayers. +subset: goslim_chembl +subset: goslim_generic +synonym: "adiposome" EXACT [] +synonym: "lipid body" EXACT [] +synonym: "lipid particle" EXACT [] +is_a: GO:0043232 ! intracellular non-membrane-bounded organelle + [Term] id: GO:0005829 name: cytosol @@ -44287,7 +45572,7 @@ relationship: part_of GO:0005737 ! cytoplasm id: GO:0005882 name: intermediate filament namespace: cellular_component -def: "A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins." [http://www.cytochemistry.net/Cell-biology/intermediate_filaments.htm, ISBN:0198506732] +def: "A cytoskeletal structure that forms a distinct elongated structure, characteristically 10 nm in diameter, that occurs in the cytoplasm of eukaryotic cells. Intermediate filaments form a fibrous system, composed of chemically heterogeneous subunits and involved in mechanically integrating the various components of the cytoplasmic space. Intermediate filaments may be divided into five chemically distinct classes: Type I, acidic keratins; Type II, basic keratins; Type III, including desmin, vimentin and others; Type IV, neurofilaments and related filaments; and Type V, lamins." [ISBN:0198506732, PMID:17493611, PMID:17551517, PMID:7979242] synonym: "intermediate filament associated protein" RELATED [] synonym: "type I intermediate filament associated protein" RELATED [] synonym: "type II intermediate filament associated protein" RELATED [] @@ -44298,6 +45583,19 @@ is_a: GO:0099513 ! polymeric cytoskeletal fiber relationship: part_of GO:0005856 ! cytoskeleton relationship: part_of GO:0045111 ! intermediate filament cytoskeleton +[Term] +id: GO:0005883 +name: neurofilament +namespace: cellular_component +def: "A type of intermediate filament found in the core of neuronal axons. Neurofilaments are heteropolymers composed of three type IV polypeptides: NF-L, NF-M, and NF-H (for low, middle, and high molecular weight). Neurofilaments are responsible for the radial growth of an axon and determine axonal diameter." [ISBN:0198506732, ISBN:0716731363, ISBN:0815316194] +synonym: "type IV intermediate filament" EXACT [] +xref: NIF_Subcellular:sao1316272517 +xref: Wikipedia:Neurofilament +is_a: GO:0005882 ! intermediate filament +relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa +relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: part_of GO:0005737 ! cytoplasm + [Term] id: GO:0005884 name: actin filament @@ -44487,7 +45785,6 @@ subset: goslim_yeast synonym: "carbohydrate metabolism" EXACT [] xref: Wikipedia:Carbohydrate_metabolism is_a: GO:0044238 ! primary metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:16646 ! carbohydrate relationship: has_primary_input_or_output CHEBI:16646 ! carbohydrate @@ -44821,7 +46118,6 @@ synonym: "aldehyde metabolism" EXACT [] synonym: "alkanal metabolic process" EXACT [] synonym: "alkanal metabolism" EXACT [] is_a: GO:0044237 ! cellular metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:17478 ! aldehyde relationship: has_primary_input_or_output CHEBI:17478 ! aldehyde @@ -44835,7 +46131,6 @@ subset: goslim_pir synonym: "organic acid metabolism" EXACT [] is_a: GO:0044237 ! cellular metabolic process is_a: GO:0044281 ! small molecule metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:64709 ! organic acid relationship: has_primary_input_or_output CHEBI:64709 ! organic acid @@ -44950,7 +46245,6 @@ synonym: "nucleobase, nucleoside and nucleotide metabolic process" RELATED [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" RELATED [GOC:dph, GOC:tb] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] is_a: GO:0044238 ! primary metabolic process -is_a: GO:1901360 ! organic cyclic compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:61120 ! nucleobase-containing molecular entity relationship: has_primary_input_or_output CHEBI:61120 ! nucleobase-containing molecular entity @@ -45149,8 +46443,6 @@ synonym: "DNA breakdown" EXACT [] synonym: "DNA catabolism" EXACT [] synonym: "DNA degradation" EXACT [] is_a: GO:0006259 ! DNA metabolic process -is_a: GO:0009057 ! macromolecule catabolic process -is_a: GO:0034655 ! nucleobase-containing compound catabolic process is_a: GO:0141188 ! nucleic acid catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:16991 ! deoxyribonucleic acid @@ -45327,9 +46619,7 @@ subset: goslim_yeast synonym: "RNA breakdown" EXACT [] synonym: "RNA catabolism" EXACT [] synonym: "RNA degradation" EXACT [] -is_a: GO:0009057 ! macromolecule catabolic process is_a: GO:0016070 ! RNA metabolic process -is_a: GO:0034655 ! nucleobase-containing compound catabolic process is_a: GO:0141188 ! nucleic acid catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:33697 ! ribonucleic acid @@ -45578,7 +46868,7 @@ namespace: biological_process def: "The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another." [GOC:go_curators] subset: goslim_pir synonym: "peptide metabolism" EXACT [] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:60466 ! peptide zwitterion relationship: has_primary_input_or_output CHEBI:60466 ! peptide zwitterion @@ -45602,7 +46892,6 @@ synonym: "cellular amino acid and derivative metabolic process" RELATED [] synonym: "cellular amino acid metabolic process" EXACT [] synonym: "cellular amino acid metabolism" EXACT [] is_a: GO:0044238 ! primary metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:35238 ! amino acid zwitterion relationship: has_primary_input_or_output CHEBI:35238 ! amino acid zwitterion @@ -45788,7 +47077,7 @@ synonym: "acetylcholine breakdown" EXACT [] synonym: "acetylcholine catabolism" EXACT [] synonym: "acetylcholine degradation" EXACT [] is_a: GO:0008291 ! acetylcholine metabolic process -is_a: GO:1901575 ! organic substance catabolic process +is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:15355 ! acetylcholine relationship: has_primary_input CHEBI:15355 ! acetylcholine @@ -45924,7 +47213,6 @@ subset: goslim_yeast synonym: "lipid metabolism" EXACT [] xref: Wikipedia:Lipid_metabolism is_a: GO:0044238 ! primary metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:18059 ! lipid relationship: has_primary_input_or_output CHEBI:18059 ! lipid @@ -46116,7 +47404,6 @@ synonym: "steroidogenesis" EXACT [] xref: Wikipedia:Steroid_metabolisms#Steroid_biosynthesis is_a: GO:0008202 ! steroid metabolic process is_a: GO:0008610 ! lipid biosynthetic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:35341 ! steroid relationship: has_primary_output CHEBI:35341 ! steroid @@ -46161,7 +47448,7 @@ relationship: has_primary_output CHEBI:64600 ! C21-steroid hormone id: GO:0006701 name: progesterone biosynthetic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants." [GOC:jl, http://www.cogsci.princeton.edu/] +def: "The chemical reactions and pathways resulting in the formation of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants." [GOC:jl, PMID:14613534] synonym: "progesterone anabolism" EXACT [] synonym: "progesterone biosynthesis" EXACT [] synonym: "progesterone formation" EXACT [] @@ -46215,7 +47502,6 @@ synonym: "steroid catabolism" EXACT [] synonym: "steroid degradation" EXACT [] is_a: GO:0008202 ! steroid metabolic process is_a: GO:0016042 ! lipid catabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:35341 ! steroid relationship: has_primary_input CHEBI:35341 ! steroid @@ -46224,7 +47510,7 @@ relationship: has_primary_input CHEBI:35341 ! steroid id: GO:0006709 name: progesterone catabolic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants." [GOC:jl, http://www.cogsci.princeton.edu/] +def: "The chemical reactions and pathways resulting in the breakdown of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants." [GOC:jl, PMID:11392024] synonym: "progesterone breakdown" EXACT [] synonym: "progesterone catabolism" EXACT [] synonym: "progesterone degradation" EXACT [] @@ -46485,7 +47771,7 @@ id: GO:0006805 name: xenobiotic metabolic process namespace: biological_process alt_id: GO:0017144 -def: "The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical." [GOC:cab2, GOC:krc] +def: "The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical." [GOC:cab2, GOC:krc] subset: goslim_chembl subset: goslim_pir synonym: "drug metabolic process" RELATED [] @@ -46739,7 +48025,7 @@ alt_id: GO:0006866 def: "The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_pir subset: goslim_yeast -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion @@ -46752,7 +48038,7 @@ def: "The directed movement of lipids into, out of or within a cell, or between subset: goslim_drosophila subset: goslim_pir subset: goslim_yeast -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:18059 ! lipid relationship: has_primary_input CHEBI:18059 ! lipid @@ -46855,7 +48141,7 @@ name: exocytosis namespace: biological_process alt_id: GO:0016194 alt_id: GO:0016195 -def: "A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell." [GOC:mah, ISBN:0716731363, PMID:22323285] +def: "A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for example of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell." [GOC:mah, ISBN:0716731363, PMID:22323285] subset: goslim_yeast synonym: "nonselective vesicle exocytosis" RELATED [] synonym: "vesicle exocytosis" EXACT [] @@ -48455,7 +49741,7 @@ relationship: results_in_development_of UBERON:0009571 ! ventral midline id: GO:0007419 name: ventral cord development namespace: biological_process -def: "The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms." [GOC:bf, GOC:go_curators, http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/S/Spemann.html] +def: "The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms." [GOC:bf, GOC:go_curators, PMID:30826502] is_a: GO:0048513 ! animal organ development intersection_of: GO:0048856 ! anatomical structure development intersection_of: results_in_development_of UBERON:0000934 ! ventral nerve cord @@ -48680,13 +49966,25 @@ relationship: part_of GO:0035216 ! haltere disc development id: GO:0007482 name: haltere development namespace: biological_process -def: "The process whose specific outcome is the progression of the haltere over time, from its formation to the mature structure. The haltere is the club-shaped 'balancers' found on each side of the metathorax among the true flies (Diptera). They are the much-modified hind wings." [GOC:jid, http://www.earthlife.net] +def: "The process whose specific outcome is the progression of the haltere over time, from its formation to the mature structure. The haltere is the club-shaped 'balancers' found on each side of the metathorax among the true flies (Diptera). They are the much-modified hind wings." [GOC:jid, PMID:32659004] is_a: GO:0048737 ! imaginal disc-derived appendage development intersection_of: GO:0048856 ! anatomical structure development intersection_of: results_in_development_of UBERON:0000987 ! haltere relationship: part_of GO:0035216 ! haltere disc development relationship: results_in_development_of UBERON:0000987 ! haltere +[Term] +id: GO:0007488 +name: histoblast morphogenesis +namespace: biological_process +def: "The process in which the anatomical structures derived from the histoblast disc are generated and organized. This includes the transformation of histoblast cells into adult structures during pupal metamorphosis. Histoblast cells are cells founded in the embryo that are the progenitors to the adult abdomen." [GOC:bf, ISBN:0879694238] +synonym: "histoblast metamorphosis" EXACT [] +is_a: GO:0000902 ! cell morphogenesis +is_a: GO:0007560 ! imaginal disc morphogenesis +intersection_of: GO:0009653 ! anatomical structure morphogenesis +intersection_of: results_in_morphogenesis_of CL:0000373 ! histoblast +relationship: results_in_morphogenesis_of CL:0000373 ! histoblast + [Term] id: GO:0007492 name: endoderm development @@ -48934,7 +50232,7 @@ relationship: only_in_taxon NCBITaxon:40674 ! Mammalia id: GO:0007566 name: embryo implantation namespace: biological_process -def: "Attachment of the blastocyst to the uterine lining." [GOC:isa_complete, http://www.medterms.com] +def: "Attachment of the blastocyst to the uterine lining." [GOC:isa_complete, PMID:10882512] synonym: "blastocyst implantation" EXACT [] is_a: GO:0022414 ! reproductive process relationship: part_of GO:0007275 ! multicellular organism development @@ -49419,7 +50717,7 @@ id: GO:0008134 name: transcription factor binding namespace: molecular_function def: "Binding to a transcription factor, a protein required to initiate or regulate transcription." [ISBN:0198506732] -comment: Note that this term should not be used for direct annotation. Please consier one of the more specific descendants, GO:0140297 ; DNA-binding transcription factor binding, GO:0140296 ; general transcription initiation factor binding or GO:0001221 ; transcription coregulator binding. +comment: Note that this term should not be used for direct annotation. Please consider one of the more specific descendants, GO:0140297 ; DNA-binding transcription factor binding, GO:0140296 ; general transcription initiation factor binding or GO:0001221 ; transcription coregulator binding. subset: gocheck_do_not_annotate subset: goslim_agr subset: goslim_chembl @@ -49503,7 +50801,6 @@ def: "The chemical reactions and pathways involving steroids, compounds with a 1 synonym: "steroid metabolism" EXACT [] xref: Wikipedia:Steroid_metabolism is_a: GO:0006629 ! lipid metabolic process -is_a: GO:1901360 ! organic cyclic compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:35341 ! steroid relationship: has_primary_input_or_output CHEBI:35341 ! steroid @@ -50115,7 +51412,7 @@ synonym: "lipid formation" EXACT [] synonym: "lipid synthesis" EXACT [] synonym: "lipogenesis" EXACT [GOC:sl] is_a: GO:0006629 ! lipid metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:18059 ! lipid relationship: has_primary_output CHEBI:18059 ! lipid @@ -50130,7 +51427,7 @@ def: "The directed movement of carbohydrate into, out of or within a cell, or be subset: goslim_pir subset: goslim_yeast synonym: "sugar transport" NARROW [] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:16646 ! carbohydrate relationship: has_primary_input CHEBI:16646 ! carbohydrate @@ -50169,7 +51466,7 @@ synonym: "amino acid synthesis" EXACT [] synonym: "cellular amino acid biosynthetic process" EXACT [] xref: Wikipedia:Amino_acid_synthesis is_a: GO:0006520 ! amino acid metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:35238 ! amino acid zwitterion relationship: has_primary_output CHEBI:35238 ! amino acid zwitterion @@ -50232,8 +51529,8 @@ synonym: "macromolecule breakdown" EXACT [] synonym: "macromolecule catabolism" EXACT [] synonym: "macromolecule degradation" EXACT [] synonym: "multicellular organismal macromolecule catabolic process" NARROW [] +is_a: GO:0009056 ! catabolic process is_a: GO:0043170 ! macromolecule metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:33694 ! biomacromolecule relationship: has_primary_input CHEBI:33694 ! biomacromolecule @@ -50276,7 +51573,6 @@ synonym: "macromolecule formation" EXACT [] synonym: "macromolecule synthesis" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:0044249 ! cellular biosynthetic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:33694 ! biomacromolecule relationship: has_primary_output CHEBI:33694 ! biomacromolecule @@ -50310,7 +51606,7 @@ synonym: "amino acid catabolism" EXACT [] synonym: "amino acid degradation" EXACT [] synonym: "cellular amino acid catabolic process" EXACT [] is_a: GO:0006520 ! amino acid metabolic process -is_a: GO:1901575 ! organic substance catabolic process +is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion @@ -50351,7 +51647,6 @@ synonym: "aromatic amino acid family metabolic process" EXACT [] synonym: "aromatic amino acid family metabolism" EXACT [] is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0006520 ! amino acid metabolic process -is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:33856 ! aromatic amino acid @@ -50371,7 +51666,6 @@ synonym: "aromatic amino acid family synthesis" EXACT [] xref: MetaCyc:COMPLETE-ARO-PWY is_a: GO:0009072 ! aromatic amino acid metabolic process is_a: GO:0016053 ! organic acid biosynthetic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:33856 ! aromatic amino acid @@ -50387,7 +51681,6 @@ synonym: "aromatic amino acid family catabolism" EXACT [] synonym: "aromatic amino acid family degradation" EXACT [] is_a: GO:0009072 ! aromatic amino acid metabolic process is_a: GO:0016054 ! organic acid catabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:33856 ! aromatic amino acid @@ -50562,7 +51855,6 @@ namespace: biological_process def: "The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] synonym: "nucleoside diphosphate metabolism" EXACT [] is_a: GO:0006793 ! phosphorus metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) relationship: has_primary_input_or_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) @@ -50576,8 +51868,8 @@ synonym: "nucleoside diphosphate anabolism" EXACT [] synonym: "nucleoside diphosphate biosynthesis" EXACT [] synonym: "nucleoside diphosphate formation" EXACT [] synonym: "nucleoside diphosphate synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0009132 ! nucleoside diphosphate metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) relationship: has_primary_output CHEBI:57930 ! nucleoside 5'-diphosphate(3-) @@ -50590,8 +51882,8 @@ def: "The chemical reactions and pathways resulting in the breakdown of a nucleo synonym: "nucleoside diphosphate breakdown" EXACT [] synonym: "nucleoside diphosphate catabolism" EXACT [] synonym: "nucleoside diphosphate degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0009132 ! nucleoside diphosphate metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:57930 ! nucleoside 5'-diphosphate(3-) relationship: has_primary_input CHEBI:57930 ! nucleoside 5'-diphosphate(3-) @@ -50643,7 +51935,6 @@ namespace: biological_process def: "The chemical reactions and pathways involving a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar." [GOC:go_curators, ISBN:0198506732] synonym: "nucleoside triphosphate metabolism" EXACT [] is_a: GO:0006793 ! phosphorus metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) relationship: has_primary_input_or_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) @@ -50657,8 +51948,8 @@ synonym: "nucleoside triphosphate anabolism" EXACT [] synonym: "nucleoside triphosphate biosynthesis" EXACT [] synonym: "nucleoside triphosphate formation" EXACT [] synonym: "nucleoside triphosphate synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0009141 ! nucleoside triphosphate metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) relationship: has_primary_output CHEBI:61557 ! nucleoside 5'-triphoshate(4-) @@ -50671,8 +51962,8 @@ def: "The chemical reactions and pathways resulting in the breakdown of a nucleo synonym: "nucleoside triphosphate breakdown" EXACT [] synonym: "nucleoside triphosphate catabolism" EXACT [] synonym: "nucleoside triphosphate degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0009141 ! nucleoside triphosphate metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:61557 ! nucleoside 5'-triphoshate(4-) relationship: has_primary_input CHEBI:61557 ! nucleoside 5'-triphoshate(4-) @@ -51195,7 +52486,6 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "response to water stimulus" EXACT [GOC:dos] is_a: GO:0001101 ! response to acid chemical is_a: GO:0009628 ! response to abiotic stimulus -is_a: GO:0010035 ! response to inorganic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:15377 ! water @@ -51511,7 +52801,6 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "growth regulator" RELATED [] synonym: "response to hormone stimulus" EXACT [GOC:dos] is_a: GO:0009719 ! response to endogenous stimulus -is_a: GO:0010033 ! response to organic substance relationship: never_in_taxon NCBITaxon:4751 ! Fungi relationship: never_in_taxon NCBITaxon:4890 ! Ascomycota @@ -51521,7 +52810,6 @@ name: response to carbohydrate namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus." [GOC:jl] synonym: "response to carbohydrate stimulus" EXACT [GOC:dos] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:16646 ! carbohydrate @@ -52065,48 +53353,21 @@ intersection_of: GO:0030261 ! chromosome condensation intersection_of: part_of GO:0051321 ! meiotic cell cycle relationship: part_of GO:0051321 ! meiotic cell cycle -[Term] -id: GO:0010033 -name: response to organic substance -namespace: biological_process -alt_id: GO:1990367 -def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus." [GOC:sm, PMID:23356676] -comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. -subset: gocheck_do_not_annotate -synonym: "process resulting in tolerance to organic substance" NARROW [] -is_a: GO:0042221 ! response to chemical -intersection_of: GO:0042221 ! response to chemical -intersection_of: has_primary_input CHEBI:50860 ! organic molecular entity -relationship: has_primary_input CHEBI:50860 ! organic molecular entity -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27194" xsd:anyURI - [Term] id: GO:0010034 name: response to acetate namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus." [GOC:sm] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:30089 ! acetate relationship: has_primary_input CHEBI:30089 ! acetate -[Term] -id: GO:0010035 -name: response to inorganic substance -namespace: biological_process -def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus." [GOC:sm] -is_a: GO:0042221 ! response to chemical -intersection_of: GO:0050896 ! response to stimulus -intersection_of: has_primary_input CHEBI:24835 ! inorganic molecular entity -relationship: has_primary_input CHEBI:24835 ! inorganic molecular entity - [Term] id: GO:0010037 name: response to carbon dioxide namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus." [GOC:sm] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide @@ -52120,7 +53381,7 @@ def: "Any process that results in a change in state or activity of a cell or an synonym: "heavy metal sensitivity/resistance" RELATED [] synonym: "response to heavy metal" NARROW [] synonym: "response to metal" EXACT [] -is_a: GO:0010035 ! response to inorganic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:25213 ! metal cation relationship: has_primary_input CHEBI:25213 ! metal cation @@ -52208,7 +53469,6 @@ def: "Any process that results in a change in state or activity of a cell or an comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. subset: gocheck_do_not_annotate synonym: "response to organic nitrogen" EXACT [] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:35352 ! organonitrogen compound @@ -54025,7 +55285,7 @@ relationship: results_in_formation_of_anatomical_entity UBERON:0002328 ! notocho id: GO:0014029 name: neural crest formation namespace: biological_process -def: "The formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation procedes." [GOC:dh, GOC:ef] +def: "The formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds." [GOC:dh, GOC:ef] is_a: GO:0001837 ! epithelial to mesenchymal transition is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis intersection_of: GO:0048646 ! anatomical structure formation involved in morphogenesis @@ -54445,7 +55705,7 @@ name: response to organic cyclic compound namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus." [GOC:ef] synonym: "response to organic cyclic substance" EXACT [GOC:mah] -is_a: GO:0010033 ! response to organic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:33832 ! organic cyclic compound relationship: has_primary_input CHEBI:33832 ! organic cyclic compound @@ -54790,7 +56050,7 @@ is_a: GO:0014819 ! regulation of skeletal muscle contraction id: GO:0014853 name: regulation of excitatory postsynaptic membrane potential involved in skeletal muscle contraction namespace: biological_process -def: "Any process, involved in skeletal muscle contraction, that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP). Excitatory postsynaptic potential (EPSP) is a temporay increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential." [GOC:ef, GOC:mtg_muscle] +def: "Any process, involved in skeletal muscle contraction, that modulates the establishment or extent of the excitatory postsynaptic potential (EPSP). Excitatory postsynaptic potential (EPSP) is a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell. The flow of ions that causes an EPSP is an excitatory postsynaptic current (EPSC) and makes it easier for the neuron to fire an action potential." [GOC:ef, GOC:mtg_muscle] synonym: "regulation of excitatory post-synaptic membrane potential involved in skeletal muscle contraction" EXACT [] is_a: GO:0098815 ! modulation of excitatory postsynaptic potential intersection_of: GO:0098815 ! modulation of excitatory postsynaptic potential @@ -55076,7 +56336,6 @@ subset: goslim_yeast synonym: "enzyme transport" NARROW [] is_a: GO:0008104 ! protein localization is_a: GO:0045184 ! establishment of protein localization -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input PR:000000001 ! protein @@ -55600,20 +56859,6 @@ intersection_of: has_primary_input CHEBI:24835 ! inorganic molecular entity relationship: has_primary_input CHEBI:24835 ! inorganic molecular entity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/14372" xsd:anyURI -[Term] -id: GO:0015351 -name: bilirubin secondary active transmembrane transporter activity -namespace: molecular_function -def: "Enables the transfer of bilirubin from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters." [GOC:mtg_transport] -synonym: "bilirubin porter activity" RELATED [] -synonym: "bilitranslocase" NARROW [] -is_a: GO:0015127 ! bilirubin transmembrane transporter activity -is_a: GO:0015291 ! secondary active transmembrane transporter activity -intersection_of: GO:0015291 ! secondary active transmembrane transporter activity -intersection_of: has_primary_input CHEBI:57977 ! bilirubin(2-) -relationship: has_primary_input CHEBI:57977 ! bilirubin(2-) -relationship: part_of GO:0015723 ! bilirubin transport - [Term] id: GO:0015355 name: secondary active monocarboxylate transmembrane transporter activity @@ -55801,7 +57046,7 @@ id: GO:0015695 name: organic cation transport namespace: biological_process def: "The directed movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage." [GOC:ai] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:25697 ! organic cation relationship: has_primary_input CHEBI:25697 ! organic cation @@ -55814,7 +57059,6 @@ alt_id: GO:0015845 def: "The directed movement into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore of quaternary ammonium compounds, any compound that can be regarded as derived from ammonium hydroxide or an ammonium salt by replacement of all four hydrogen atoms of the NH4+ ion by organic groups." [GOC:ai, ISBN:0198506732] synonym: "quaternary amine transport" EXACT [] synonym: "quaternary ammonium compound transport" EXACT [] -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:26469 ! quaternary nitrogen compound @@ -55847,7 +57091,7 @@ id: GO:0015711 name: organic anion transport namespace: biological_process def: "The directed movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage." [GOC:ai, GOC:krc] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:25696 ! organic anion relationship: has_primary_input CHEBI:25696 ! organic anion @@ -55916,7 +57160,7 @@ id: GO:0015748 name: organophosphate ester transport namespace: biological_process def: "The directed movement of organophosphate esters into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organophosphate esters are small organic molecules containing phosphate ester bonds." [GOC:mcc] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:25703 ! organic phosphate relationship: has_primary_input CHEBI:25703 ! organic phosphate @@ -56063,7 +57307,6 @@ namespace: biological_process def: "The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] subset: goslim_pir is_a: GO:0042886 ! amide transport -is_a: GO:0071702 ! organic substance transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion relationship: has_primary_input CHEBI:60466 ! peptide zwitterion @@ -56075,7 +57318,6 @@ namespace: biological_process def: "The directed movement of amines, including polyamines, organic compounds containing one or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai, ISBN:0198506732] subset: goslim_pir synonym: "amine/polyamine transport" RELATED [] -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:32952 ! amine @@ -56087,7 +57329,6 @@ name: monoamine transport namespace: biological_process alt_id: GO:0015873 def: "The directed movement of monoamines, organic compounds that contain one amino group that is connected to an aromatic ring by an ethylene group (-CH2-CH2-), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:63534 ! monoamine @@ -56099,7 +57340,7 @@ name: organic acid transport namespace: biological_process def: "The directed movement of organic acids, any acidic compound containing carbon in covalent linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [ISBN:0198506732] subset: goslim_pir -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:64709 ! organic acid relationship: has_primary_input CHEBI:64709 ! organic acid @@ -56110,7 +57351,7 @@ name: organic hydroxy compound transport namespace: biological_process def: "The directed movement of an organic hydroxy compound (organic alcohol) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An organic hydroxy compound is an organic compound having at least one hydroxy group attached to a carbon atom." [GOC:ai] synonym: "organic alcohol transport" EXACT [] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:33822 ! organic hydroxy compound relationship: has_primary_input CHEBI:33822 ! organic hydroxy compound @@ -56121,7 +57362,6 @@ name: nucleobase transport namespace: biological_process def: "The directed movement of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [ISBN:0198506732] synonym: "nucleobase transmembrane transport" EXACT [GOC:mah] -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:18282 ! nucleobase @@ -56282,7 +57522,7 @@ id: GO:0015895 name: alkane transport namespace: biological_process def: "The directed movement of alkanes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Alkanes are saturated aliphatic hydrocarbon compounds." [GOC:ai] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:18310 ! alkane relationship: has_primary_input CHEBI:18310 ! alkane @@ -56345,7 +57585,6 @@ def: "The directed movement of nucleobases, nucleosides, nucleotides and nucleic subset: goslim_pir subset: goslim_yeast synonym: "nucleobase, nucleoside, nucleotide and nucleic acid transport" RELATED [GOC:dph, GOC:tb] -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity @@ -56441,7 +57680,7 @@ synonym: "multicellular organism lipid catabolic process" NARROW [] synonym: "multicellular organismal lipid catabolic process" NARROW [] xref: Wikipedia:Lipid_catabolism is_a: GO:0006629 ! lipid metabolic process -is_a: GO:1901575 ! organic substance catabolic process +is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:18059 ! lipid relationship: has_primary_input CHEBI:18059 ! lipid @@ -56532,7 +57771,7 @@ synonym: "carbohydrate biosynthesis" EXACT [] synonym: "carbohydrate formation" EXACT [] synonym: "carbohydrate synthesis" EXACT [] is_a: GO:0005975 ! carbohydrate metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:16646 ! carbohydrate relationship: has_primary_output CHEBI:16646 ! carbohydrate @@ -56553,7 +57792,7 @@ synonym: "catabolic carbohydrate metabolism" EXACT [] synonym: "multicellular organismal carbohydrate catabolic process" NARROW [] synonym: "single-organism carbohydrate catabolic process" RELATED [] is_a: GO:0005975 ! carbohydrate metabolic process -is_a: GO:1901575 ! organic substance catabolic process +is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:16646 ! carbohydrate relationship: has_primary_input CHEBI:16646 ! carbohydrate @@ -56572,7 +57811,6 @@ synonym: "organic acid synthesis" EXACT [] is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0044249 ! cellular biosynthetic process is_a: GO:0044283 ! small molecule biosynthetic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:64709 ! organic acid relationship: has_primary_output CHEBI:64709 ! organic acid @@ -56588,7 +57826,6 @@ synonym: "organic acid degradation" EXACT [] is_a: GO:0006082 ! organic acid metabolic process is_a: GO:0044248 ! cellular catabolic process is_a: GO:0044282 ! small molecule catabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:64709 ! organic acid relationship: has_primary_input CHEBI:64709 ! organic acid @@ -57447,7 +58684,6 @@ synonym: "hydroxybenzene metabolic process" EXACT [] synonym: "hydroxybenzene metabolism" EXACT [] synonym: "phenol-containing compound metabolism" EXACT [] xref: UM-BBD_pathwayID:phe -is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:33853 ! phenols @@ -57649,7 +58885,6 @@ name: response to pheromone namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus." [GOC:jl] synonym: "pheromone response" EXACT [] -is_a: GO:0010033 ! response to organic substance [Term] id: GO:0019293 @@ -57790,7 +59025,6 @@ synonym: "phenol-containing compound catabolism" EXACT [] synonym: "phenol-containing compound degradation" EXACT [] xref: MetaCyc:PHENOLDEG-PWY is_a: GO:0018958 ! phenol-containing compound metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901616 ! organic hydroxy compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:33853 ! phenols @@ -58009,7 +59243,6 @@ def: "The chemical reactions and pathways involving organophosphates, any phosph subset: goslim_pombe synonym: "organophosphate metabolism" EXACT [] is_a: GO:0006793 ! phosphorus metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:25710 ! organophosphorus compound relationship: has_primary_input_or_output CHEBI:25710 ! organophosphorus compound @@ -58077,7 +59310,6 @@ name: choline metabolic process namespace: biological_process def: "The chemical reactions and pathways involving choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine." [GOC:jl, ISBN:0192801023] synonym: "choline metabolism" EXACT [] -is_a: GO:0071704 ! organic substance metabolic process is_a: GO:0097164 ! ammonium ion metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:15354 ! choline @@ -58172,7 +59404,7 @@ name: one-carbon compound transport namespace: biological_process def: "The directed movement of one-carbon compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai] synonym: "one carbon compound transport" EXACT [] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:64708 ! one-carbon compound relationship: has_primary_input CHEBI:64708 ! one-carbon compound @@ -58790,7 +60022,7 @@ relationship: results_in_development_of UBERON:0001646 ! abducens nerve id: GO:0021561 name: facial nerve development namespace: biological_process -def: "The process whose specific outcome is the progression of the facial nerve over time, from its formation to the mature structure. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives off nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] +def: "The process whose specific outcome is the progression of the facial nerve over time, from its formation to the mature structure. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial ophthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives off nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] synonym: "CN VII development" RELATED [GOC:cls] synonym: "cranial nerve 7 development" EXACT [GOC:cls] synonym: "cranial nerve VII development" EXACT [GOC:cls] @@ -59256,7 +60488,7 @@ relationship: results_in_formation_of_anatomical_entity UBERON:0002019 ! accesso id: GO:0021610 name: facial nerve morphogenesis namespace: biological_process -def: "The process in which the anatomical structure of the facial nerve is generated and organized. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] +def: "The process in which the anatomical structure of the facial nerve is generated and organized. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial ophthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] synonym: "CN VII morphogenesis" RELATED [] is_a: GO:0021602 ! cranial nerve morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis @@ -59268,7 +60500,7 @@ relationship: results_in_morphogenesis_of UBERON:0001647 ! facial nerve id: GO:0021611 name: facial nerve formation namespace: biological_process -def: "The process that gives rise to the facial nerve. This process pertains to the initial formation of a structure from unspecified parts. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] +def: "The process that gives rise to the facial nerve. This process pertains to the initial formation of a structure from unspecified parts. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial ophthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] synonym: "CN VII biosynthesis" RELATED [] synonym: "CN VII formation" RELATED [] is_a: GO:0021603 ! cranial nerve formation @@ -59281,7 +60513,7 @@ relationship: results_in_formation_of_anatomical_entity UBERON:0001647 ! facial id: GO:0021613 name: facial nerve maturation namespace: biological_process -def: "A developmental process, independent of morphogenetic (shape) change, that is required for the facial nerve to attain its fully functional state. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial opthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] +def: "A developmental process, independent of morphogenetic (shape) change, that is required for the facial nerve to attain its fully functional state. This sensory and motor nerve supplies the muscles of facial expression and the expression and taste at the anterior two-thirds of the tongue. The principal branches are the superficial ophthalmic, buccal, palatine and hyomandibular. The main trunk synapses within pterygopalatine ganglion in the parotid gland and this ganglion then gives of nerve branches which supply the lacrimal gland and the mucous secreting glands of the nasal and oral cavities." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, ISBN:0838580343] synonym: "CN VII maturation" RELATED [] is_a: GO:0021605 ! cranial nerve maturation intersection_of: GO:0021700 ! developmental maturation @@ -60265,7 +61497,7 @@ relationship: results_in_maturation_of UBERON:0007247 ! nucleus of superior oliv id: GO:0021723 name: medullary reticular formation development namespace: biological_process -def: "The process whose specific outcome is the progression of the medullary reticular formation over time, from its formation to the mature structure. The medullary reticular formation is a series of brain nuclei located in the medulla oblongata." [GO_REF:0000021, GOC:cjm, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid, http://www.brainspan.org, Wikipedia:Rhombencephalon] +def: "The process whose specific outcome is the progression of the medullary reticular formation over time, from its formation to the mature structure. The medullary reticular formation is a series of brain nuclei located in the medulla oblongata." [GO_REF:0000021, GOC:cjm, GOC:cls, GOC:curators, GOC:dgh, GOC:dph, GOC:jid, https://www.ncbi.nlm.nih.gov/books/NBK556102/, Wikipedia:Rhombencephalon] synonym: "rhombencephalic reticular formation development" BROAD [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development @@ -62273,7 +63505,7 @@ relationship: process_has_causal_agent GO:0005884 ! actin filament id: GO:0030030 name: cell projection organization namespace: biological_process -def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, GOC:mah, http://www.cogsci.princeton.edu/~wn/] +def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, GOC:mah, PMID:16318917] subset: goslim_prokaryote synonym: "cell projection organisation" EXACT [] synonym: "cell projection organization and biogenesis" RELATED [GOC:mah] @@ -62288,7 +63520,7 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i id: GO:0030031 name: cell projection assembly namespace: biological_process -def: "Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, GOC:mah, http://www.cogsci.princeton.edu/~wn/] +def: "Formation of a prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, GOC:mah, PMID:18391171] synonym: "cell projection biogenesis" RELATED [GOC:mah] synonym: "formation of a cell surface projection" EXACT [] is_a: GO:0022607 ! cellular component assembly @@ -62352,7 +63584,7 @@ relationship: results_in_transport_along GO:0005884 ! actin filament id: GO:0030054 name: cell junction namespace: cellular_component -def: "A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella." [GOC:aruk, GOC:bc, GOC:mah, http://www.vivo.colostate.edu/hbooks/cmb/cells/pmemb/junctions_a.html, ISBN:0198506732, PMID:26820516, PMID:28096264] +def: "A cellular component that forms a specialized region of connection between two or more cells, or between a cell and the extracellular matrix, or between two membrane-bound components of a cell, such as flagella." [GOC:aruk, GOC:bc, GOC:mah, ISBN:0198506732, PMID:26820516, PMID:28096264] subset: goslim_agr subset: goslim_drosophila subset: goslim_flybase_ribbon @@ -62394,7 +63626,7 @@ intersection_of: has_primary_input PR:000009054 ! insulin gene translation produ relationship: has_primary_input PR:000009054 ! insulin gene translation product relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/11255#issuecomment-426191045" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/11255" xsd:anyURI [Term] id: GO:0030097 @@ -62452,6 +63684,17 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0006897 ! endocytosis relationship: regulates GO:0006897 ! endocytosis +[Term] +id: GO:0030101 +name: natural killer cell activation +namespace: biological_process +def: "The change in morphology and behavior of a natural killer cell in response to a cytokine, chemokine, cellular ligand, or soluble factor." [GOC:mgi_curators, ISBN:0781735149] +synonym: "NK cell activation" EXACT [] +is_a: GO:0046649 ! lymphocyte activation +intersection_of: GO:0001775 ! cell activation +intersection_of: has_primary_input CL:0000623 ! natural killer cell +relationship: has_primary_input CL:0000623 ! natural killer cell + [Term] id: GO:0030103 name: vasopressin secretion @@ -62625,7 +63868,7 @@ relationship: has_primary_input CHEBI:37396 ! proteoglycan id: GO:0030168 name: platelet activation namespace: biological_process -def: "A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug." [http://www.graylab.ac.uk/omd/] +def: "A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug." [PMID:27403440] synonym: "blood coagulation, platelet activation" EXACT [GOC:add, GOC:pde] is_a: GO:0001775 ! cell activation intersection_of: GO:0001775 ! cell activation @@ -63488,13 +64731,14 @@ relationship: negatively_regulates GO:0030282 ! bone mineralization [Term] id: GO:0030518 -name: intracellular steroid hormone receptor signaling pathway +name: nuclear receptor-mediated steroid hormone signaling pathway namespace: biological_process -def: "The series of molecular signals initiated by a steroid binding to an intracellular steroid hormone receptor." [GOC:mah, GOC:signaling] +def: "A nuclear receptor-mediated signaling pathway initiated by a steroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [GOC:mah, GOC:signaling] +synonym: "intracellular steroid hormone receptor signaling pathway" EXACT [] synonym: "steroid hormone receptor signaling pathway" BROAD [GOC:bf] synonym: "steroid hormone receptor signalling pathway" BROAD [GOC:bf] -is_a: GO:0043401 ! steroid hormone mediated signaling pathway -is_a: GO:0141193 ! nuclear receptor signaling pathway +is_a: GO:0043401 ! steroid hormone receptor signaling pathway +is_a: GO:0141193 ! nuclear receptor-mediated signaling pathway [Term] id: GO:0030522 @@ -63504,7 +64748,7 @@ def: "The series of molecular signals initiated by a ligand binding to a recepto synonym: "intracellular receptor mediated signaling pathway" EXACT [] synonym: "intracellular receptor-mediated signaling pathway" EXACT [] synonym: "intracellular receptor-mediated signalling pathway" EXACT [] -is_a: GO:0007165 ! signal transduction +is_a: GO:0035556 ! intracellular signal transduction [Term] id: GO:0030539 @@ -64023,6 +65267,53 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0030855 ! epithelial cell differentiation relationship: positively_regulates GO:0030855 ! epithelial cell differentiation +[Term] +id: GO:0030863 +name: cortical cytoskeleton +namespace: cellular_component +def: "The portion of the cytoskeleton that lies just beneath the plasma membrane." [GOC:mah] +is_a: GO:0005856 ! cytoskeleton +relationship: part_of GO:0005938 ! cell cortex + +[Term] +id: GO:0030864 +name: cortical actin cytoskeleton +namespace: cellular_component +def: "The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane." [GOC:mah] +is_a: GO:0030863 ! cortical cytoskeleton +intersection_of: GO:0030863 ! cortical cytoskeleton +intersection_of: part_of GO:0015629 ! actin cytoskeleton +relationship: part_of GO:0015629 ! actin cytoskeleton + +[Term] +id: GO:0030865 +name: cortical cytoskeleton organization +namespace: biological_process +def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane." [GOC:dph, GOC:jl, GOC:mah] +synonym: "cortical cytoskeleton organisation" EXACT [] +synonym: "cortical cytoskeleton organization and biogenesis" RELATED [GOC:mah] +is_a: GO:0007010 ! cytoskeleton organization +intersection_of: GO:0016043 ! cellular component organization +intersection_of: results_in_organization_of GO:0030863 ! cortical cytoskeleton +relationship: results_in_organization_of GO:0030863 ! cortical cytoskeleton + +[Term] +id: GO:0030866 +name: cortical actin cytoskeleton organization +namespace: biological_process +alt_id: GO:0033109 +def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of actin-based cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane." [GOC:dph, GOC:jl, GOC:mah, GOC:pf] +synonym: "actin cortex stabilization" EXACT [] +synonym: "cortical actin cytoskeleton organisation" EXACT [] +synonym: "cortical actin cytoskeleton organization and biogenesis" RELATED [GOC:mah] +synonym: "cortical actin cytoskeleton stabilization" EXACT [] +synonym: "cortical resistance" RELATED [] +is_a: GO:0030036 ! actin cytoskeleton organization +is_a: GO:0030865 ! cortical cytoskeleton organization +intersection_of: GO:0016043 ! cellular component organization +intersection_of: results_in_organization_of GO:0030864 ! cortical actin cytoskeleton +relationship: results_in_organization_of GO:0030864 ! cortical actin cytoskeleton + [Term] id: GO:0030878 name: thyroid gland development @@ -64145,7 +65436,7 @@ relationship: positively_regulates GO:0042100 ! B cell proliferation id: GO:0030900 name: forebrain development namespace: biological_process -def: "The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions)." [http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=forebrain] +def: "The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions)." [PMID:4975589, PMID:4992177] synonym: "prosencephalon development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development @@ -64157,7 +65448,7 @@ relationship: results_in_development_of UBERON:0001890 ! forebrain id: GO:0030901 name: midbrain development namespace: biological_process -def: "The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)." [http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=midbrain] +def: "The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)." [PMID:4975589, PMID:4992177] synonym: "mesencephalon development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development @@ -64169,7 +65460,7 @@ relationship: results_in_development_of UBERON:0001891 ! midbrain id: GO:0030902 name: hindbrain development namespace: biological_process -def: "The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium)." [http://www2.merriam-webster.com/cgi-bin/mwmednlm?book=Medical&va=hindbrain] +def: "The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium)." [PMID:4975589, PMID:4992177] synonym: "rhombencephalon development" EXACT [] is_a: GO:0048856 ! anatomical structure development intersection_of: GO:0048856 ! anatomical structure development @@ -64998,6 +66289,47 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0006906 ! vesicle fusion relationship: positively_regulates GO:0006906 ! vesicle fusion +[Term] +id: GO:0031341 +name: regulation of cell killing +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of cell killing, the process in which a cell brings about the death of another cell, either in the same or a different organism." [GOC:mah] +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0001906 ! cell killing +relationship: regulates GO:0001906 ! cell killing + +[Term] +id: GO:0031342 +name: negative regulation of cell killing +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of cell killing." [GOC:mah] +synonym: "down regulation of cell killing" EXACT [] +synonym: "down-regulation of cell killing" EXACT [] +synonym: "downregulation of cell killing" EXACT [] +synonym: "inhibition of cell killing" NARROW [] +is_a: GO:0031341 ! regulation of cell killing +is_a: GO:0048523 ! negative regulation of cellular process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0001906 ! cell killing +relationship: negatively_regulates GO:0001906 ! cell killing + +[Term] +id: GO:0031343 +name: positive regulation of cell killing +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of cell killing." [GOC:mah] +synonym: "activation of cell killing" NARROW [] +synonym: "stimulation of cell killing" NARROW [] +synonym: "up regulation of cell killing" EXACT [] +synonym: "up-regulation of cell killing" EXACT [] +synonym: "upregulation of cell killing" EXACT [] +is_a: GO:0031341 ! regulation of cell killing +is_a: GO:0048522 ! positive regulation of cellular process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0001906 ! cell killing +relationship: positively_regulates GO:0001906 ! cell killing + [Term] id: GO:0031344 name: regulation of cell projection organization @@ -65387,6 +66719,21 @@ intersection_of: GO:0005488 ! binding intersection_of: has_primary_input PR:000001206 ! CX3C chemokine receptor 1 relationship: has_primary_input PR:000001206 ! CX3C chemokine receptor 1 +[Term] +id: GO:0031887 +name: lipid droplet transport along microtubule +namespace: biological_process +def: "The directed movement of a lipid droplet along a microtubule, mediated by motor proteins." [PMID:9491895] +synonym: "adiposome transport along microtubule" EXACT [] +synonym: "lipid body transport along microtubule" EXACT [] +synonym: "lipid particle transport along microtubule" EXACT [] +is_a: GO:0072384 ! organelle transport along microtubule +intersection_of: GO:0006810 ! transport +intersection_of: has_primary_input GO:0005811 ! lipid droplet +intersection_of: results_in_transport_along GO:0005874 ! microtubule +relationship: has_primary_input GO:0005811 ! lipid droplet +relationship: results_in_transport_along GO:0005874 ! microtubule + [Term] id: GO:0031943 name: regulation of glucocorticoid metabolic process @@ -65530,12 +66877,12 @@ relationship: positively_regulates GO:0006713 ! glucocorticoid catabolic process [Term] id: GO:0031958 -name: intracellular corticosteroid receptor signaling pathway +name: nuclear receptor-mediated corticosteroid signaling pathway namespace: biological_process -def: "The series of molecular signals initiated by corticosteroid binding to its nuclear receptor inside the cell, and ending with the regulation of a downstream cellular process, e.g. transcription." [GOC:mah, PMID:11027914, PMID:12606724] -synonym: "corticosteroid receptor signaling pathway" BROAD [] +def: "A nuclear receptor-mediated signaling pathway initiated by a corticosteroid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [PMID:11027914, PMID:12606724] synonym: "corticosteroid receptor signalling pathway" BROAD [] -is_a: GO:0030518 ! intracellular steroid hormone receptor signaling pathway +synonym: "intracellular corticosteroid receptor signaling pathway" EXACT [] +is_a: GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway [Term] id: GO:0031960 @@ -65624,6 +66971,17 @@ intersection_of: GO:0040011 ! locomotion intersection_of: part_of GO:0007626 ! locomotory behavior relationship: part_of GO:0007626 ! locomotory behavior +[Term] +id: GO:0032019 +name: mitochondrial cloud +namespace: cellular_component +def: "A prominent mass in the cytoplasm of previtellogenic oocytes. The cloud contains both mitochondria and electron-dense granulofibrillar material (GFM) and is the source of germinal granule material." [PMID:6541166] +synonym: "Balbiani body" EXACT [] +synonym: "mitochondrial aggregate" RELATED [] +is_a: GO:0043232 ! intracellular non-membrane-bounded organelle +relationship: part_of CL:0000023 ! oocyte +relationship: part_of GO:0005737 ! cytoplasm + [Term] id: GO:0032024 name: positive regulation of insulin secretion @@ -67305,6 +68663,79 @@ intersection_of: GO:0015031 ! protein transport intersection_of: occurs_in GO:0016020 ! membrane relationship: occurs_in GO:0016020 ! membrane +[Term] +id: GO:0032609 +name: type II interferon production +namespace: biological_process +alt_id: GO:0042095 +alt_id: GO:0072643 +def: "The appearance of interferon-gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Interferon-gamma is also known as type II interferon." [GOC:add, GOC:mah, PMID:15546383] +subset: gocheck_do_not_annotate +synonym: "IFNG production" EXACT [GOC:mah] +synonym: "interferon-gamma biosynthetic process" NARROW [] +synonym: "interferon-gamma production" EXACT [] +synonym: "interferon-gamma secretion" NARROW [] +synonym: "type II IFN production" EXACT [GOC:mah] +is_a: GO:0001816 ! cytokine production + +[Term] +id: GO:0032649 +name: regulation of type II interferon production +namespace: biological_process +alt_id: GO:0045072 +alt_id: GO:1902713 +def: "Any process that modulates the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon." [GOC:add, GOC:mah, PMID:15546383] +synonym: "regulation of interferon-gamma biosynthetic process" NARROW [] +synonym: "regulation of interferon-gamma production" EXACT [] +synonym: "regulation of interferon-gamma secretion" NARROW [] +is_a: GO:0001817 ! regulation of cytokine production +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0032609 ! type II interferon production +relationship: regulates GO:0032609 ! type II interferon production + +[Term] +id: GO:0032689 +name: negative regulation of type II interferon production +namespace: biological_process +alt_id: GO:0045077 +alt_id: GO:1902714 +def: "Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon." [GOC:add, GOC:mah, PMID:15546383] +synonym: "down regulation of interferon-gamma production" EXACT [] +synonym: "down-regulation of interferon-gamma production" EXACT [] +synonym: "downregulation of interferon-gamma production" EXACT [] +synonym: "inhibition of interferon-gamma production" NARROW [] +synonym: "negative regulation of interferon-gamma biosynthetic process" NARROW [] +synonym: "negative regulation of interferon-gamma production" EXACT [] +synonym: "negative regulation of interferon-gamma secretion" NARROW [] +is_a: GO:0001818 ! negative regulation of cytokine production +is_a: GO:0032649 ! regulation of type II interferon production +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0032609 ! type II interferon production +relationship: negatively_regulates GO:0032609 ! type II interferon production + +[Term] +id: GO:0032729 +name: positive regulation of type II interferon production +namespace: biological_process +alt_id: GO:0045078 +alt_id: GO:1902715 +def: "Any process that activates or increases the frequency, rate, or extent of interferon-gamma production. Interferon-gamma is also known as type II interferon." [GOC:add, GOC:mah, PMID:15546383] +synonym: "activation of interferon-gamma production" NARROW [] +synonym: "positive regulation of interferon-gamma biosynthetic process" NARROW [] +synonym: "positive regulation of interferon-gamma production" EXACT [] +synonym: "positive regulation of interferon-gamma secretion" NARROW [] +synonym: "stimulation of interferon-gamma production" NARROW [] +synonym: "up regulation of interferon-gamma production" EXACT [] +synonym: "up-regulation of interferon-gamma production" EXACT [] +synonym: "upregulation of interferon-gamma production" EXACT [] +is_a: GO:0001819 ! positive regulation of cytokine production +is_a: GO:0032649 ! regulation of type II interferon production +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0032609 ! type II interferon production +relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa +relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: positively_regulates GO:0032609 ! type II interferon production + [Term] id: GO:0032774 name: RNA biosynthetic process @@ -67321,9 +68752,7 @@ synonym: "RNA anabolism" EXACT [] synonym: "RNA biosynthesis" EXACT [] synonym: "RNA formation" EXACT [] synonym: "RNA synthesis" EXACT [] -is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0016070 ! RNA metabolic process -is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process is_a: GO:0141187 ! nucleic acid biosynthetic process intersection_of: GO:0009059 ! macromolecule biosynthetic process intersection_of: has_primary_output CHEBI:33697 ! ribonucleic acid @@ -67409,6 +68838,264 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0048242 ! epinephrine secretion relationship: positively_regulates GO:0048242 ! epinephrine secretion +[Term] +id: GO:0032814 +name: regulation of natural killer cell activation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of natural killer cell activation." [GOC:mah] +synonym: "regulation of NK cell activation" EXACT [] +is_a: GO:0051249 ! regulation of lymphocyte activation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0030101 ! natural killer cell activation +relationship: regulates GO:0030101 ! natural killer cell activation + +[Term] +id: GO:0032815 +name: negative regulation of natural killer cell activation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell activation." [GOC:mah] +synonym: "down regulation of natural killer cell activation" EXACT [] +synonym: "down-regulation of natural killer cell activation" EXACT [] +synonym: "downregulation of natural killer cell activation" EXACT [] +synonym: "inhibition of natural killer cell activation" NARROW [] +synonym: "negative regulation of NK cell activation" EXACT [] +is_a: GO:0032814 ! regulation of natural killer cell activation +is_a: GO:0051250 ! negative regulation of lymphocyte activation +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0030101 ! natural killer cell activation +relationship: negatively_regulates GO:0030101 ! natural killer cell activation + +[Term] +id: GO:0032816 +name: positive regulation of natural killer cell activation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell activation." [GOC:mah] +synonym: "activation of natural killer cell activation" NARROW [] +synonym: "positive regulation of NK cell activation" EXACT [] +synonym: "stimulation of natural killer cell activation" NARROW [] +synonym: "up regulation of natural killer cell activation" EXACT [] +synonym: "up-regulation of natural killer cell activation" EXACT [] +synonym: "upregulation of natural killer cell activation" EXACT [] +is_a: GO:0032814 ! regulation of natural killer cell activation +is_a: GO:0051251 ! positive regulation of lymphocyte activation +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0030101 ! natural killer cell activation +relationship: positively_regulates GO:0030101 ! natural killer cell activation + +[Term] +id: GO:0032817 +name: regulation of natural killer cell proliferation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of natural killer cell proliferation." [GOC:mah] +synonym: "regulation of NK cell proliferation" EXACT [] +is_a: GO:0032814 ! regulation of natural killer cell activation +is_a: GO:0050670 ! regulation of lymphocyte proliferation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0001787 ! natural killer cell proliferation +relationship: regulates GO:0001787 ! natural killer cell proliferation + +[Term] +id: GO:0032818 +name: negative regulation of natural killer cell proliferation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation." [GOC:mah] +synonym: "down regulation of natural killer cell proliferation" EXACT [] +synonym: "down-regulation of natural killer cell proliferation" EXACT [] +synonym: "downregulation of natural killer cell proliferation" EXACT [] +synonym: "inhibition of natural killer cell proliferation" NARROW [] +synonym: "negative regulation of NK cell proliferation" EXACT [] +is_a: GO:0032815 ! negative regulation of natural killer cell activation +is_a: GO:0032817 ! regulation of natural killer cell proliferation +is_a: GO:0050672 ! negative regulation of lymphocyte proliferation +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0001787 ! natural killer cell proliferation +relationship: negatively_regulates GO:0001787 ! natural killer cell proliferation + +[Term] +id: GO:0032819 +name: positive regulation of natural killer cell proliferation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell proliferation." [GOC:mah] +synonym: "activation of natural killer cell proliferation" NARROW [] +synonym: "positive regulation of NK cell proliferation" EXACT [] +synonym: "stimulation of natural killer cell proliferation" NARROW [] +synonym: "up regulation of natural killer cell proliferation" EXACT [] +synonym: "up-regulation of natural killer cell proliferation" EXACT [] +synonym: "upregulation of natural killer cell proliferation" EXACT [] +is_a: GO:0032816 ! positive regulation of natural killer cell activation +is_a: GO:0032817 ! regulation of natural killer cell proliferation +is_a: GO:0050671 ! positive regulation of lymphocyte proliferation +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0001787 ! natural killer cell proliferation +relationship: positively_regulates GO:0001787 ! natural killer cell proliferation + +[Term] +id: GO:0032820 +name: regulation of natural killer cell proliferation involved in immune response +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of natural killer cell proliferation as part of an immune response." [GOC:mah] +synonym: "regulation of natural killer cell proliferation during immune response" RELATED [GOC:tb] +synonym: "regulation of NK cell proliferation during immune response" RELATED [] +is_a: GO:0002697 ! regulation of immune effector process +is_a: GO:0032817 ! regulation of natural killer cell proliferation +is_a: GO:0050776 ! regulation of immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0002324 ! natural killer cell proliferation involved in immune response +relationship: regulates GO:0002324 ! natural killer cell proliferation involved in immune response +relationship: regulates GO:0006955 ! immune response + +[Term] +id: GO:0032821 +name: negative regulation of natural killer cell proliferation involved in immune response +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation as part of an immune response." [GOC:mah] +synonym: "down regulation of natural killer cell proliferation during immune response" RELATED [] +synonym: "down-regulation of natural killer cell proliferation during immune response" RELATED [] +synonym: "downregulation of natural killer cell proliferation during immune response" RELATED [] +synonym: "inhibition of natural killer cell proliferation during immune response" NARROW [] +synonym: "negative regulation of natural killer cell proliferation during immune response" RELATED [GOC:tb] +synonym: "negative regulation of NK cell proliferation during immune response" RELATED [] +is_a: GO:0002698 ! negative regulation of immune effector process +is_a: GO:0032818 ! negative regulation of natural killer cell proliferation +is_a: GO:0032820 ! regulation of natural killer cell proliferation involved in immune response +is_a: GO:0050777 ! negative regulation of immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response +relationship: negatively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response +relationship: negatively_regulates GO:0006955 ! immune response + +[Term] +id: GO:0032822 +name: positive regulation of natural killer cell proliferation involved in immune response +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell proliferation as part of an immune response." [GOC:mah] +synonym: "activation of natural killer cell proliferation during immune response" NARROW [] +synonym: "positive regulation of natural killer cell proliferation during immune response" RELATED [GOC:tb] +synonym: "positive regulation of NK cell proliferation during immune response" RELATED [] +synonym: "stimulation of natural killer cell proliferation during immune response" NARROW [] +synonym: "up regulation of natural killer cell proliferation during immune response" RELATED [] +synonym: "up-regulation of natural killer cell proliferation during immune response" RELATED [] +synonym: "upregulation of natural killer cell proliferation during immune response" RELATED [] +is_a: GO:0002699 ! positive regulation of immune effector process +is_a: GO:0032819 ! positive regulation of natural killer cell proliferation +is_a: GO:0032820 ! regulation of natural killer cell proliferation involved in immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response +relationship: positively_regulates GO:0002324 ! natural killer cell proliferation involved in immune response + +[Term] +id: GO:0032823 +name: regulation of natural killer cell differentiation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of natural killer cell differentiation." [GOC:mah] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "regulation of natural killer cell development" RELATED [GOC:add] +synonym: "regulation of NK cell differentiation" EXACT [] +is_a: GO:0032814 ! regulation of natural killer cell activation +is_a: GO:0045619 ! regulation of lymphocyte differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0001779 ! natural killer cell differentiation +relationship: regulates GO:0001779 ! natural killer cell differentiation + +[Term] +id: GO:0032824 +name: negative regulation of natural killer cell differentiation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation." [GOC:mah] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "down regulation of natural killer cell differentiation" EXACT [] +synonym: "down-regulation of natural killer cell differentiation" EXACT [] +synonym: "downregulation of natural killer cell differentiation" EXACT [] +synonym: "inhibition of natural killer cell differentiation" NARROW [] +synonym: "negative regulation of natural killer cell development" RELATED [GOC:add] +synonym: "negative regulation of NK cell differentiation" EXACT [] +is_a: GO:0032815 ! negative regulation of natural killer cell activation +is_a: GO:0032823 ! regulation of natural killer cell differentiation +is_a: GO:0045620 ! negative regulation of lymphocyte differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0001779 ! natural killer cell differentiation +relationship: negatively_regulates GO:0001779 ! natural killer cell differentiation + +[Term] +id: GO:0032825 +name: positive regulation of natural killer cell differentiation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation." [GOC:mah] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "activation of natural killer cell differentiation" NARROW [] +synonym: "positive regulation of natural killer cell development" RELATED [GOC:add] +synonym: "positive regulation of NK cell differentiation" EXACT [] +synonym: "stimulation of natural killer cell differentiation" NARROW [] +synonym: "up regulation of natural killer cell differentiation" EXACT [] +synonym: "up-regulation of natural killer cell differentiation" EXACT [] +synonym: "upregulation of natural killer cell differentiation" EXACT [] +is_a: GO:0032816 ! positive regulation of natural killer cell activation +is_a: GO:0032823 ! regulation of natural killer cell differentiation +is_a: GO:0045621 ! positive regulation of lymphocyte differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0001779 ! natural killer cell differentiation +relationship: positively_regulates GO:0001779 ! natural killer cell differentiation + +[Term] +id: GO:0032826 +name: regulation of natural killer cell differentiation involved in immune response +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of natural killer cell differentiation as part of an immune response." [GOC:mah] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "regulation of natural killer cell development involved in immune response" RELATED [GOC:add] +synonym: "regulation of natural killer cell differentiation during immune response" RELATED [GOC:tb] +synonym: "regulation of NK cell differentiation during immune response" RELATED [] +is_a: GO:0002697 ! regulation of immune effector process +is_a: GO:0032823 ! regulation of natural killer cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0002325 ! natural killer cell differentiation involved in immune response +relationship: regulates GO:0002325 ! natural killer cell differentiation involved in immune response + +[Term] +id: GO:0032827 +name: negative regulation of natural killer cell differentiation involved in immune response +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell differentiation as part of an immune response." [GOC:mah] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "down regulation of natural killer cell differentiation during immune response" RELATED [] +synonym: "down-regulation of natural killer cell differentiation during immune response" RELATED [] +synonym: "downregulation of natural killer cell differentiation during immune response" RELATED [] +synonym: "inhibition of natural killer cell differentiation during immune response" NARROW [] +synonym: "negative regulation of natural killer cell development involved in immune response" RELATED [GOC:add] +synonym: "negative regulation of natural killer cell differentiation during immune response" RELATED [GOC:tb] +synonym: "negative regulation of NK cell differentiation during immune response" RELATED [] +is_a: GO:0002698 ! negative regulation of immune effector process +is_a: GO:0032824 ! negative regulation of natural killer cell differentiation +is_a: GO:0032826 ! regulation of natural killer cell differentiation involved in immune response +is_a: GO:0050777 ! negative regulation of immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response +relationship: negatively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response +relationship: negatively_regulates GO:0006955 ! immune response + +[Term] +id: GO:0032828 +name: positive regulation of natural killer cell differentiation involved in immune response +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell differentiation as part of an immune response." [GOC:mah] +comment: Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'. +synonym: "activation of natural killer cell differentiation during immune response" NARROW [] +synonym: "positive regulation of natural killer cell development involved in immune response" RELATED [GOC:add] +synonym: "positive regulation of natural killer cell differentiation during immune response" RELATED [GOC:tb] +synonym: "positive regulation of NK cell differentiation during immune response" RELATED [] +synonym: "stimulation of natural killer cell differentiation during immune response" NARROW [] +synonym: "up regulation of natural killer cell differentiation during immune response" RELATED [] +synonym: "up-regulation of natural killer cell differentiation during immune response" RELATED [] +synonym: "upregulation of natural killer cell differentiation during immune response" RELATED [] +is_a: GO:0002699 ! positive regulation of immune effector process +is_a: GO:0032825 ! positive regulation of natural killer cell differentiation +is_a: GO:0032826 ! regulation of natural killer cell differentiation involved in immune response +is_a: GO:0050778 ! positive regulation of immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response +relationship: positively_regulates GO:0002325 ! natural killer cell differentiation involved in immune response +relationship: positively_regulates GO:0006955 ! immune response + [Term] id: GO:0032835 name: glomerulus development @@ -67493,7 +69180,6 @@ id: GO:0032870 name: cellular response to hormone stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus." [GOC:mah] -is_a: GO:0071310 ! cellular response to organic substance is_a: GO:0071495 ! cellular response to endogenous stimulus [Term] @@ -68022,7 +69708,6 @@ def: "The chemical reactions and pathways involving tetrapyrroles, natural pigme subset: goslim_pombe subset: goslim_prokaryote synonym: "tetrapyrrole metabolism" EXACT [] -is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:26932 ! tetrapyrrole @@ -68038,7 +69723,6 @@ synonym: "tetrapyrrole biosynthesis" EXACT [] synonym: "tetrapyrrole formation" EXACT [] synonym: "tetrapyrrole synthesis" EXACT [] is_a: GO:0033013 ! tetrapyrrole metabolic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:26932 ! tetrapyrrole @@ -68053,7 +69737,6 @@ synonym: "tetrapyrrole breakdown" EXACT [] synonym: "tetrapyrrole catabolism" EXACT [] synonym: "tetrapyrrole degradation" EXACT [] is_a: GO:0033013 ! tetrapyrrole metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:26932 ! tetrapyrrole @@ -68487,10 +70170,10 @@ namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway." [GOC:mah] synonym: "regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] synonym: "regulation of steroid hormone receptor signalling pathway" BROAD [] -is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:1902531 ! regulation of intracellular signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0030518 ! intracellular steroid hormone receptor signaling pathway -relationship: regulates GO:0030518 ! intracellular steroid hormone receptor signaling pathway +intersection_of: regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway +relationship: regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway [Term] id: GO:0033144 @@ -68499,11 +70182,11 @@ namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway." [GOC:mah] synonym: "negative regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] synonym: "negative regulation of steroid hormone receptor signalling pathway" BROAD [GOC:bf] -is_a: GO:0009968 ! negative regulation of signal transduction is_a: GO:0033143 ! regulation of intracellular steroid hormone receptor signaling pathway +is_a: GO:1902532 ! negative regulation of intracellular signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0030518 ! intracellular steroid hormone receptor signaling pathway -relationship: negatively_regulates GO:0030518 ! intracellular steroid hormone receptor signaling pathway +intersection_of: negatively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway +relationship: negatively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway [Term] id: GO:0033145 @@ -68512,11 +70195,11 @@ namespace: biological_process def: "Any process that activates or increases the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway." [GOC:mah] synonym: "positive regulation of steroid hormone receptor signaling pathway" BROAD [GOC:bf] synonym: "positive regulation of steroid hormone receptor signalling pathway" BROAD [] -is_a: GO:0009967 ! positive regulation of signal transduction is_a: GO:0033143 ! regulation of intracellular steroid hormone receptor signaling pathway +is_a: GO:1902533 ! positive regulation of intracellular signal transduction intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0030518 ! intracellular steroid hormone receptor signaling pathway -relationship: positively_regulates GO:0030518 ! intracellular steroid hormone receptor signaling pathway +intersection_of: positively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway +relationship: positively_regulates GO:0030518 ! nuclear receptor-mediated steroid hormone signaling pathway [Term] id: GO:0033151 @@ -68576,7 +70259,7 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus." [GOC:sl] synonym: "response to adenosine 5'-triphosphate" EXACT [] synonym: "response to adenosine triphosphate" EXACT [] -is_a: GO:0010033 ! response to organic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:30616 ! ATP(4-) relationship: has_primary_input CHEBI:30616 ! ATP(4-) @@ -68709,6 +70392,18 @@ intersection_of: GO:0005488 ! binding intersection_of: has_primary_input CHEBI:15354 ! choline relationship: has_primary_input CHEBI:15354 ! choline +[Term] +id: GO:0033268 +name: node of Ranvier +namespace: cellular_component +def: "An axon part that is a gap in the myelin where voltage-gated sodium channels cluster and saltatory conduction is executed." [GOC:mh] +synonym: "node of Ranvier axon" RELATED [NIF_Subcellular:sao188049490] +xref: NIF_Subcellular:birnlex_1152_2 +xref: Wikipedia:Nodes_of_Ranvier +is_a: GO:0110165 ! cellular anatomical entity +relationship: part_of GO:0030424 ! axon +relationship: part_of GO:0044304 ! main axon + [Term] id: GO:0033278 name: cell proliferation in midbrain @@ -69239,6 +70934,19 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0033687 ! osteoblast proliferation relationship: positively_regulates GO:0033687 ! osteoblast proliferation +[Term] +id: GO:0033693 +name: neurofilament bundle assembly +namespace: biological_process +def: "The assembly of neurofilaments into bundles, in which the filaments are longitudinally oriented, with numerous crossbridges between them. Neurofilament bundles may be cross-linked to each other, to membrane-bounded organelles or other cytoskeletal structures such as microtubules." [PMID:11034913, PMID:11264295] +synonym: "NF bundle assembly" EXACT [] +is_a: GO:0045110 ! intermediate filament bundle assembly +intersection_of: GO:0022607 ! cellular component assembly +intersection_of: results_in_organization_of GO:0005883 ! neurofilament +relationship: in_taxon NCBITaxon:33208 {all_only="true"} ! Metazoa +relationship: only_in_taxon NCBITaxon:33208 ! Metazoa +relationship: results_in_organization_of GO:0005883 ! neurofilament + [Term] id: GO:0033750 name: ribosome localization @@ -69269,7 +70977,7 @@ id: GO:0033993 name: response to lipid namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus." [GOC:sl] -is_a: GO:0010033 ! response to organic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:18059 ! lipid relationship: has_primary_input CHEBI:18059 ! lipid @@ -69302,7 +71010,7 @@ name: response to cytokine namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus." [GOC:sl] synonym: "response to cytokine stimulus" EXACT [GOC:dos] -is_a: GO:0010033 ! response to organic substance +is_a: GO:1901652 ! response to peptide [Term] id: GO:0034101 @@ -69638,6 +71346,23 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0034349 ! glial cell apoptotic process relationship: positively_regulates GO:0034349 ! glial cell apoptotic process +[Term] +id: GO:0034389 +name: lipid droplet organization +namespace: biological_process +def: "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle." [GOC:dph, GOC:jl, GOC:mah, PMID:18093937, PMID:18250201] +synonym: "adiposome organization" EXACT [] +synonym: "lipid body organization" EXACT [] +synonym: "lipid particle organisation" EXACT [] +synonym: "lipid particle organization" EXACT [] +synonym: "lipid particle organization and biogenesis" BROAD [GOC:mah] +is_a: GO:0006996 ! organelle organization +intersection_of: GO:0016043 ! cellular component organization +intersection_of: results_in_organization_of GO:0005811 ! lipid droplet +relationship: results_in_organization_of GO:0005811 ! lipid droplet +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/13534" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/15963" xsd:anyURI + [Term] id: GO:0034390 name: smooth muscle cell apoptotic process @@ -69813,7 +71538,7 @@ synonym: "nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis" EXAC synonym: "nucleobase, nucleoside, nucleotide and nucleic acid formation" EXACT [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid synthesis" NARROW [] is_a: GO:0006139 ! nucleobase-containing compound metabolic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:61120 ! nucleobase-containing molecular entity relationship: has_primary_output CHEBI:61120 ! nucleobase-containing molecular entity @@ -69829,7 +71554,7 @@ synonym: "nucleobase, nucleoside, nucleotide and nucleic acid catabolic process" synonym: "nucleobase, nucleoside, nucleotide and nucleic acid catabolism" EXACT [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid degradation" EXACT [] is_a: GO:0006139 ! nucleobase-containing compound metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process +is_a: GO:0009056 ! catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity relationship: has_primary_input CHEBI:61120 ! nucleobase-containing molecular entity @@ -70426,7 +72151,7 @@ relationship: part_of GO:0007275 ! multicellular organism development id: GO:0035190 name: syncytial nuclear migration namespace: biological_process -def: "The directed movement of nuclei within the syncytial embryo of insects. These precise temporal and spatial patterns of nuclear movement are coordinated with mitotic divisons and are required during blastoderm formation to reposition dividing nuclei from the interior of the syncytial embryo to the cortex." [GOC:bf, ISBN:0879694238, PMID:8314839] +def: "The directed movement of nuclei within the syncytial embryo of insects. These precise temporal and spatial patterns of nuclear movement are coordinated with mitotic divisions and are required during blastoderm formation to reposition dividing nuclei from the interior of the syncytial embryo to the cortex." [GOC:bf, ISBN:0879694238, PMID:8314839] is_a: GO:0007097 ! nuclear migration intersection_of: GO:0007097 ! nuclear migration intersection_of: occurs_in CL:0000228 ! multinucleate cell @@ -70581,7 +72306,7 @@ is_a: GO:0007268 ! chemical synaptic transmission id: GO:0035260 name: internal genitalia morphogenesis namespace: biological_process -def: "The process in which the anatomical structures of the internal genitalia are generated and organized. The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals." [http://www.ndif.org/Terms/genitalia.html] +def: "The process in which the anatomical structures of the internal genitalia are generated and organized. The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals." [PMID:24793987, PMID:25247640] is_a: GO:0035112 ! genitalia morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis intersection_of: results_in_morphogenesis_of UBERON:0004175 ! internal genitalia @@ -70591,7 +72316,7 @@ relationship: results_in_morphogenesis_of UBERON:0004175 ! internal genitalia id: GO:0035261 name: external genitalia morphogenesis namespace: biological_process -def: "The process in which the anatomical structures of the external genitalia are generated and organized. The external genitalia are the outer sex organs, such as the penis or vulva in mammals." [http://www.ndif.org/Terms/genitalia.html] +def: "The process in which the anatomical structures of the external genitalia are generated and organized. The external genitalia are the outer sex organs, such as the penis or vulva in mammals." [PMID:24793987, PMID:25247640] is_a: GO:0035112 ! genitalia morphogenesis intersection_of: GO:0009653 ! anatomical structure morphogenesis intersection_of: results_in_morphogenesis_of UBERON:0004176 ! external genitalia @@ -71216,11 +72941,10 @@ creation_date: 2011-03-11T10:04:12Z id: GO:0035735 name: intraciliary transport involved in cilium assembly namespace: biological_process -def: "The bidirectional movement of large protein complexes along microtubules within a cilium that contributes to cilium assembly." [GOC:bf, GOC:cilia, Reactome:R-HSA-5620924.2] +def: "The bidirectional movement of large protein complexes along microtubules within a cilium that contributes to cilium assembly." [GOC:bf, GOC:cilia] synonym: "intraciliary transport involved in cilium morphogenesis" RELATED [] synonym: "intraflagellar transport" BROAD [] synonym: "intraflagellar transport involved in cilium morphogenesis" RELATED [] -xref: Reactome:R-HSA-5620924.2 is_a: GO:0042073 ! intraciliary transport intersection_of: GO:0042073 ! intraciliary transport intersection_of: part_of GO:0060271 ! cilium assembly @@ -71240,6 +72964,18 @@ relationship: part_of GO:0001745 ! compound eye morphogenesis created_by: bf creation_date: 2011-03-17T10:57:03Z +[Term] +id: GO:0035747 +name: natural killer cell chemotaxis +namespace: biological_process +def: "The directed movement of a natural killer cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis)." [CL:0000623, GOC:BHF] +is_a: GO:0048247 ! lymphocyte chemotaxis +intersection_of: GO:0006935 ! chemotaxis +intersection_of: results_in_movement_of CL:0000623 ! natural killer cell +relationship: results_in_movement_of CL:0000623 ! natural killer cell +created_by: bf +creation_date: 2011-03-17T02:40:10Z + [Term] id: GO:0035754 name: B cell chemotaxis @@ -71584,7 +73320,7 @@ creation_date: 2011-05-10T10:44:09Z id: GO:0035846 name: oviduct epithelium development namespace: biological_process -def: "The progression of the oviduct epithelium over time from its initial formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism. The oviduct epithelium is the specialized epithelium that lines the oviduct." [GOC:yaf, http://www.thefreedictionary.com/oviduct] +def: "The progression of the oviduct epithelium over time from its initial formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism. The oviduct epithelium is the specialized epithelium that lines the oviduct." [GOC:yaf, PMID:34496237] synonym: "fallopian tube epithelium development" NARROW [GOC:yaf] is_a: GO:0003006 ! developmental process involved in reproduction is_a: GO:0060429 ! epithelium development @@ -71613,7 +73349,7 @@ creation_date: 2011-05-10T10:57:45Z id: GO:0035848 name: oviduct morphogenesis namespace: biological_process -def: "The process in which anatomical structures of the oviduct are generated and organized. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism." [GOC:yaf, http://www.thefreedictionary.com/oviduct] +def: "The process in which anatomical structures of the oviduct are generated and organized. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism." [GOC:yaf, PMID:22918811] synonym: "fallopian tube morphogenesis" NARROW [GOC:yaf] is_a: GO:0009887 ! animal organ morphogenesis is_a: GO:0035239 ! tube morphogenesis @@ -72100,6 +73836,17 @@ is_a: GO:0001957 ! intramembranous ossification created_by: bf creation_date: 2011-12-19T01:49:38Z +[Term] +id: GO:0036074 +name: metaplastic ossification +namespace: biological_process +def: "Direct ossification in which bone formation occurs as result of the direct transformation of non-bone cells into bone cells without cell division." [GO_REF:0000034] +comment: Some intramembranous ossification may also be classified as metaplastic; the former classifies based on tissue type location, and the latter based on mechanism/cell division. +synonym: "metaplasia" RELATED [GO_REF:0000034] +is_a: GO:0036072 ! direct ossification +created_by: bf +creation_date: 2011-12-19T01:50:35Z + [Term] id: GO:0036075 name: replacement ossification @@ -72154,7 +73901,7 @@ creation_date: 2012-01-26T01:58:10Z id: GO:0036135 name: Schwann cell migration namespace: biological_process -def: "The orderly movement of a Schwann cell from one site to another. A Schwann cell is a glial cell that ensheathes axons of neuron in the peripheral nervous system and is necessary for their maintainance and function." [CL:0002573, PMID:20335460] +def: "The orderly movement of a Schwann cell from one site to another. A Schwann cell is a glial cell that ensheathes axons of neuron in the peripheral nervous system and is necessary for their maintenance and function." [CL:0002573, PMID:20335460] is_a: GO:0008347 ! glial cell migration intersection_of: GO:0016477 ! cell migration intersection_of: results_in_movement_of CL:0002573 ! Schwann cell @@ -73110,7 +74857,7 @@ id: GO:0042073 name: intraciliary transport namespace: biological_process alt_id: GO:0035734 -def: "The bidirectional movement of large protein complexes along microtubules within a cilium, mediated by motor proteins." [GOC:cilia, GOC:kmv, PMID:17981739, PMID:18180368, PMID:22869374, Reactome:R-HSA-5620924.2] +def: "The bidirectional movement of large protein complexes along microtubules within a cilium, mediated by motor proteins." [GOC:cilia, GOC:kmv, PMID:17981739, PMID:18180368, PMID:22869374] comment: Note that we deem cilium and microtubule-based flagellum to be equivalent. synonym: "IFT" RELATED [] synonym: "intraflagellar transport" EXACT [] @@ -73140,7 +74887,7 @@ relationship: results_in_transport_along GO:0005874 ! microtubule id: GO:0042074 name: cell migration involved in gastrulation namespace: biological_process -def: "The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression)." [GOC:jl, http://www.cellmigration.org/, ISBN:0878932437] +def: "The migration of individual cells within the blastocyst to help establish the multi-layered body plan of the organism (gastrulation). For example, the migration of cells from the surface to the interior of the embryo (ingression)." [GOC:jl, PMID:16099638] is_a: GO:0001667 ! ameboidal-type cell migration intersection_of: GO:0016477 ! cell migration intersection_of: part_of GO:0007369 ! gastrulation @@ -73491,7 +75238,7 @@ name: xenobiotic catabolic process namespace: biological_process alt_id: GO:0042737 alt_id: GO:0042738 -def: "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organim exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical." [GOC:jl, GOC:krc] +def: "The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical." [GOC:jl, GOC:krc] subset: goslim_prokaryote synonym: "drug breakdown" RELATED [] synonym: "drug catabolic process" RELATED [] @@ -73517,7 +75264,6 @@ subset: goslim_pir synonym: "ketone metabolism" EXACT [] is_a: GO:0044237 ! cellular metabolic process is_a: GO:0044281 ! small molecule metabolic process -is_a: GO:0071704 ! organic substance metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:17087 ! ketone relationship: has_primary_input_or_output CHEBI:17087 ! ketone @@ -73534,7 +75280,6 @@ synonym: "ketone synthesis" EXACT [] is_a: GO:0042180 ! cellular ketone metabolic process is_a: GO:0044249 ! cellular biosynthetic process is_a: GO:0044283 ! small molecule biosynthetic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:17087 ! ketone relationship: has_primary_output CHEBI:17087 ! ketone @@ -73550,7 +75295,6 @@ synonym: "ketone degradation" EXACT [] is_a: GO:0042180 ! cellular ketone metabolic process is_a: GO:0044248 ! cellular catabolic process is_a: GO:0044282 ! small molecule catabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:17087 ! ketone relationship: has_primary_input CHEBI:17087 ! ketone @@ -73683,6 +75427,46 @@ intersection_of: results_in_assembly_of GO:0005840 ! ribosome relationship: part_of GO:0042254 ! ribosome biogenesis relationship: results_in_assembly_of GO:0005840 ! ribosome +[Term] +id: GO:0042267 +name: natural killer cell mediated cytotoxicity +namespace: biological_process +def: "The directed killing of a target cell by a natural killer cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors." [GOC:add, GOC:pr] +comment: Note that either or both mechanisms mentioned in the definition may be used in this process. Note that both granule release and the engagement of death receptors on target cells result in induction of apoptosis in the target cell. +synonym: "killer activity" RELATED [] +synonym: "natural killer cell mediated cell death" EXACT [] +synonym: "natural killer cell mediated cell killing" EXACT [] +synonym: "natural killer cell mediated cytolysis" RELATED [] +synonym: "natural killer-cell mediated cytolysis" RELATED [] +synonym: "NK cell mediated cell death" EXACT [] +synonym: "NK cell mediated cell killing" EXACT [] +synonym: "NK cell mediated cytolysis" RELATED [] +synonym: "NK cell mediated cytotoxicity" EXACT [] +is_a: GO:0001909 ! leukocyte mediated cytotoxicity +is_a: GO:0002228 ! natural killer cell mediated immunity +intersection_of: GO:0001906 ! cell killing +intersection_of: process_has_causal_agent CL:0000623 ! natural killer cell +relationship: process_has_causal_agent CL:0000623 ! natural killer cell + +[Term] +id: GO:0042269 +name: regulation of natural killer cell mediated cytotoxicity +namespace: biological_process +def: "Any process that modulates the frequency, rate, or extent of natural killer cell mediated cytotoxicity." [GOC:add, ISBN:0781735149] +synonym: "regulation of natural killer cell mediated cell death" EXACT [] +synonym: "regulation of natural killer cell mediated cell killing" EXACT [] +synonym: "regulation of natural killer cell mediated cytolysis" RELATED [] +synonym: "regulation of natural killer-cell mediated cytolysis" RELATED [] +synonym: "regulation of NK cell mediated cell death" EXACT [] +synonym: "regulation of NK cell mediated cell killing" EXACT [] +synonym: "regulation of NK cell mediated cytolysis" RELATED [] +synonym: "regulation of NK cell mediated cytotoxicity" RELATED [] +is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity +is_a: GO:0002715 ! regulation of natural killer cell mediated immunity +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0042267 ! natural killer cell mediated cytotoxicity +relationship: regulates GO:0042267 ! natural killer cell mediated cytotoxicity + [Term] id: GO:0042277 name: peptide binding @@ -74049,7 +75833,7 @@ def: "The chemical reactions and pathways involving epinephrine, a hormone produ synonym: "adrenaline metabolic process" EXACT [] synonym: "adrenaline metabolism" EXACT [] synonym: "epinephrine metabolism" EXACT [] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:71406 ! (R)-adrenaline(1+) relationship: has_primary_input_or_output CHEBI:71406 ! (R)-adrenaline(1+) @@ -74064,7 +75848,7 @@ synonym: "levarterenol metabolism" EXACT [] synonym: "noradrenaline metabolic process" EXACT [] synonym: "noradrenaline metabolism" EXACT [] synonym: "norepinephrine metabolism" EXACT [] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:72587 ! (R)-noradrenaline(1+) relationship: has_primary_input_or_output CHEBI:72587 ! (R)-noradrenaline(1+) @@ -74107,8 +75891,8 @@ synonym: "epinephrine anabolism" EXACT [] synonym: "epinephrine biosynthesis" EXACT [] synonym: "epinephrine formation" EXACT [] synonym: "epinephrine synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0042414 ! epinephrine metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:71406 ! (R)-adrenaline(1+) relationship: has_primary_output CHEBI:71406 ! (R)-adrenaline(1+) @@ -74123,8 +75907,8 @@ synonym: "adrenaline catabolism" EXACT [] synonym: "epinephrine breakdown" EXACT [] synonym: "epinephrine catabolism" EXACT [] synonym: "epinephrine degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0042414 ! epinephrine metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) relationship: has_primary_input CHEBI:71406 ! (R)-adrenaline(1+) @@ -74156,8 +75940,8 @@ synonym: "norepinephrine anabolism" EXACT [] synonym: "norepinephrine biosynthesis" EXACT [] synonym: "norepinephrine formation" EXACT [] synonym: "norepinephrine synthesis" EXACT [] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0042415 ! norepinephrine metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:72587 ! (R)-noradrenaline(1+) relationship: has_primary_output CHEBI:72587 ! (R)-noradrenaline(1+) @@ -74175,8 +75959,8 @@ synonym: "norepinephrine breakdown" EXACT [] synonym: "norepinephrine catabolism" EXACT [] synonym: "norepinephrine degradation" EXACT [] xref: Wikipedia:Norepinephrine#Degradation +is_a: GO:0009056 ! catabolic process is_a: GO:0042415 ! norepinephrine metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) relationship: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) @@ -74300,7 +76084,6 @@ synonym: "indole derivative metabolism" NARROW [] synonym: "indole-containing compound metabolism" EXACT [] synonym: "ketole metabolic process" EXACT [] synonym: "ketole metabolism" EXACT [] -is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:24828 ! indoles @@ -74318,7 +76101,6 @@ synonym: "indole-containing compound biosynthesis" EXACT [] synonym: "indole-containing compound formation" EXACT [] synonym: "indole-containing compound synthesis" EXACT [] is_a: GO:0042430 ! indole-containing compound metabolic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:24828 ! indoles @@ -74335,7 +76117,6 @@ synonym: "indole-containing compound breakdown" EXACT [] synonym: "indole-containing compound catabolism" EXACT [] synonym: "indole-containing compound degradation" EXACT [] is_a: GO:0042430 ! indole-containing compound metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:24828 ! indoles @@ -74406,7 +76187,7 @@ is_a: GO:0042445 ! hormone metabolic process id: GO:0042448 name: progesterone metabolic process namespace: biological_process -def: "The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants." [GOC:jl, http://www.cogsci.princeton.edu/] +def: "The chemical reactions and pathways involving progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants." [GOC:jl, PMID:11392024] synonym: "progesterone metabolism" EXACT [] is_a: GO:0008207 ! C21-steroid hormone metabolic process is_a: GO:0042180 ! cellular ketone metabolic process @@ -74756,7 +76537,7 @@ def: "The chemical reactions and pathways involving benzene, C6H6, a volatile, v synonym: "benzene and derivative metabolic process" EXACT [] synonym: "benzene and derivative metabolism" EXACT [] synonym: "benzene-containing compound metabolism" EXACT [GOC:mah] -is_a: GO:1901360 ! organic cyclic compound metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:22712 ! benzenes relationship: has_primary_input_or_output CHEBI:22712 ! benzenes @@ -75021,7 +76802,7 @@ relationship: results_in_growth_of UBERON:0000459 ! uterine wall id: GO:0042713 name: sperm ejaculation namespace: biological_process -def: "The expulsion of seminal fluid, thick white fluid containing spermatozoa, from the male genital tract." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] +def: "The expulsion of seminal fluid, thick white fluid containing spermatozoa, from the male genital tract." [GOC:jl, PMID:26385403] is_a: GO:0048609 ! multicellular organismal reproductive process relationship: part_of GO:0007320 ! insemination @@ -75049,14 +76830,14 @@ relationship: has_primary_input NCBITaxon:2 ! Bacteria id: GO:0042745 name: circadian sleep/wake cycle namespace: biological_process -def: "The cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm." [GOC:jl, http://www.sleepquest.com] +def: "The cycle from wakefulness through an orderly succession of sleep states and stages that occurs on an approximately 24 hour rhythm." [GOC:jl, PMID:26947521, PMID:33537937] is_a: GO:0048512 ! circadian behavior [Term] id: GO:0042748 name: circadian sleep/wake cycle, non-REM sleep namespace: biological_process -def: "All sleep stages in the circadian sleep/wake cycle other than REM sleep. These stages are characterized by a slowing of brain waves and other physiological functions." [GOC:jl, http://www.sleepquest.com] +def: "All sleep stages in the circadian sleep/wake cycle other than REM sleep. These stages are characterized by a slowing of brain waves and other physiological functions." [GOC:jl, PMID:33537937] is_a: GO:0022410 ! circadian sleep/wake cycle process relationship: part_of GO:0050802 ! circadian sleep/wake cycle, sleep @@ -75150,18 +76931,19 @@ relationship: part_of GO:0042886 ! amide transport [Term] id: GO:0042921 -name: intracellular glucocorticoid receptor signaling pathway +name: nuclear receptor-mediated glucocorticoid signaling pathway namespace: biological_process -def: "The series of molecular signals initiated by glucocorticoid binding to its nuclear receptor inside the cell, and ending with the regulation of a downstream cellular process, e.g. transcription." [GOC:mah] +def: "A nuclear receptor-mediated signaling pathway initiated by a glucocorticoid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [GOC:mah] synonym: "glucocorticoid receptor signaling pathway" BROAD [] synonym: "glucocorticoid receptor signalling pathway" BROAD [] -is_a: GO:0031958 ! intracellular corticosteroid receptor signaling pathway +synonym: "intracellular glucocorticoid receptor signaling pathway" EXACT [] +is_a: GO:0031958 ! nuclear receptor-mediated corticosteroid signaling pathway [Term] id: GO:0042923 name: neuropeptide binding namespace: molecular_function -def: "Interacting selectively and non-covalently and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators)." [http://www.wormbook.org/chapters/www_neuropeptides/neuropeptides.html] +def: "Interacting selectively and non-covalently and stoichiometrically with neuropeptides, peptides with direct synaptic effects (peptide neurotransmitters) or indirect modulatory effects on the nervous system (peptide neuromodulators)." [PMID:10414961, PMID:38337033] is_a: GO:0042277 ! peptide binding [Term] @@ -75191,9 +76973,9 @@ id: GO:0042953 name: lipoprotein transport namespace: biological_process def: "The directed movement of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:jl, ISBN:0198506732] +is_a: GO:0006810 ! transport is_a: GO:0044872 ! lipoprotein localization is_a: GO:0045184 ! establishment of protein localization -is_a: GO:0071702 ! organic substance transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:6495 ! lipoprotein relationship: has_primary_input CHEBI:6495 ! lipoprotein @@ -75216,7 +76998,7 @@ relationship: regulates GO:0006915 ! apoptotic process id: GO:0042995 name: cell projection namespace: cellular_component -def: "A prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] +def: "A prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, PMID:16318917] subset: goslim_agr subset: goslim_euk_cellular_processes_ribbon subset: goslim_flybase_ribbon @@ -75296,7 +77078,7 @@ relationship: process_has_causal_agent GO:0031982 ! vesicle id: GO:0043005 name: neuron projection namespace: cellular_component -def: "A prolongation or process extending from a nerve cell, e.g. an axon or dendrite." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] +def: "A prolongation or process extending from a nerve cell, e.g. an axon or dendrite." [GOC:jl, PMID:3077060] subset: goslim_pir synonym: "nerve fiber" RELATED [GOC:dph] synonym: "neurite" NARROW [] @@ -75456,7 +77238,7 @@ synonym: "peptide biosynthesis" EXACT [] synonym: "peptide formation" EXACT [] synonym: "peptide synthesis" EXACT [] is_a: GO:0006518 ! peptide metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process +is_a: GO:0009058 ! biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:60466 ! peptide zwitterion relationship: has_primary_output CHEBI:60466 ! peptide zwitterion @@ -75776,7 +77558,7 @@ synonym: "biopolymer metabolic process" EXACT [GOC:mtg_chebi_dec09] synonym: "macromolecule metabolism" EXACT [] synonym: "multicellular organismal macromolecule metabolic process" NARROW [] synonym: "organismal macromolecule metabolism" EXACT [] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:33694 ! biomacromolecule relationship: has_primary_input_or_output CHEBI:33694 ! biomacromolecule @@ -75792,7 +77574,6 @@ synonym: "peptide catabolism" EXACT [] synonym: "peptide degradation" EXACT [] is_a: GO:0006518 ! peptide metabolic process is_a: GO:0044248 ! cellular catabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion relationship: has_primary_input CHEBI:60466 ! peptide zwitterion @@ -75863,7 +77644,6 @@ alt_id: GO:0010237 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups." [GOC:ef, GOC:mlg] synonym: "response to amino acid stimulus" EXACT [GOC:dos] is_a: GO:0001101 ! response to acid chemical -is_a: GO:0010033 ! response to organic substance intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:35238 ! amino acid zwitterion relationship: has_primary_input CHEBI:35238 ! amino acid zwitterion @@ -76352,6 +78132,77 @@ relationship: positively_regulates GO:0002444 ! myeloid leukocyte mediated immun relationship: positively_regulates GO:0006955 ! immune response relationship: positively_regulates GO:0043312 ! neutrophil degranulation +[Term] +id: GO:0043320 +name: natural killer cell degranulation +namespace: biological_process +def: "The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a natural killer cell." [ISBN:0781735149] +synonym: "natural killer cell granule exocytosis" EXACT [] +synonym: "NK cell degranulation" EXACT [] +synonym: "NK cell granule exocytosis" EXACT [] +is_a: GO:0043299 ! leukocyte degranulation +intersection_of: GO:0045055 ! regulated exocytosis +intersection_of: occurs_in CL:0000623 ! natural killer cell +relationship: occurs_in CL:0000623 ! natural killer cell +relationship: part_of GO:0002323 ! natural killer cell activation involved in immune response +relationship: part_of GO:0042267 ! natural killer cell mediated cytotoxicity + +[Term] +id: GO:0043321 +name: regulation of natural killer cell degranulation +namespace: biological_process +def: "Any process that modulates the frequency, rate, or extent of natural killer cell degranulation." [ISBN:0781735149] +synonym: "regulation of natural killer cell granule exocytosis" EXACT [] +synonym: "regulation of NK cell degranulation" EXACT [] +synonym: "regulation of NK cell granule exocytosis" EXACT [] +is_a: GO:0042269 ! regulation of natural killer cell mediated cytotoxicity +is_a: GO:0043300 ! regulation of leukocyte degranulation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0043320 ! natural killer cell degranulation +relationship: regulates GO:0042267 ! natural killer cell mediated cytotoxicity +relationship: regulates GO:0043320 ! natural killer cell degranulation + +[Term] +id: GO:0043322 +name: negative regulation of natural killer cell degranulation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the rate of natural killer cell degranulation." [ISBN:0781735149] +synonym: "down regulation of natural killer cell degranulation" EXACT [] +synonym: "down-regulation of natural killer cell degranulation" EXACT [] +synonym: "downregulation of natural killer cell degranulation" EXACT [] +synonym: "inhibition of natural killer cell degranulation" NARROW [] +synonym: "negative regulation of natural killer cell granule exocytosis" EXACT [] +synonym: "negative regulation of NK cell degranulation" EXACT [] +synonym: "negative regulation of NK cell granule exocytosis" EXACT [] +is_a: GO:0043301 ! negative regulation of leukocyte degranulation +is_a: GO:0043321 ! regulation of natural killer cell degranulation +is_a: GO:0045953 ! negative regulation of natural killer cell mediated cytotoxicity +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0043320 ! natural killer cell degranulation +relationship: negatively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity +relationship: negatively_regulates GO:0043320 ! natural killer cell degranulation + +[Term] +id: GO:0043323 +name: positive regulation of natural killer cell degranulation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell degranulation." [ISBN:0781735149] +synonym: "activation of natural killer cell degranulation" NARROW [] +synonym: "positive regulation of natural killer cell granule exocytosis" EXACT [] +synonym: "positive regulation of NK cell degranulation" EXACT [] +synonym: "positive regulation of NK cell granule exocytosis" EXACT [] +synonym: "stimulation of natural killer cell degranulation" NARROW [] +synonym: "up regulation of natural killer cell degranulation" EXACT [] +synonym: "up-regulation of natural killer cell degranulation" EXACT [] +synonym: "upregulation of natural killer cell degranulation" EXACT [] +is_a: GO:0043302 ! positive regulation of leukocyte degranulation +is_a: GO:0043321 ! regulation of natural killer cell degranulation +is_a: GO:0045954 ! positive regulation of natural killer cell mediated cytotoxicity +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0043320 ! natural killer cell degranulation +relationship: positively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity +relationship: positively_regulates GO:0043320 ! natural killer cell degranulation + [Term] id: GO:0043324 name: pigment metabolic process involved in developmental pigmentation @@ -76470,10 +78321,11 @@ relationship: has_primary_input CHEBI:37396 ! proteoglycan [Term] id: GO:0043401 -name: steroid hormone mediated signaling pathway +name: steroid hormone receptor signaling pathway namespace: biological_process def: "The series of molecular signals mediated by a steroid hormone binding to a receptor." [PMID:12606724] synonym: "steroid hormone mediated signalling" EXACT [] +synonym: "steroid hormone-mediated signaling pathway" EXACT [] is_a: GO:0009755 ! hormone-mediated signaling pathway relationship: part_of GO:0071383 ! cellular response to steroid hormone stimulus @@ -76483,7 +78335,7 @@ name: glucocorticoid mediated signaling pathway namespace: biological_process def: "The series of molecular signals mediated by the detection of a glucocorticoid hormone." [PMID:15240347] synonym: "glucocorticoid mediated signalling" EXACT [] -is_a: GO:0043401 ! steroid hormone mediated signaling pathway +is_a: GO:0043401 ! steroid hormone receptor signaling pathway relationship: part_of GO:0071385 ! cellular response to glucocorticoid stimulus [Term] @@ -77351,13 +79203,14 @@ is_a: GO:0009987 ! cellular process id: GO:0044238 name: primary metabolic process namespace: biological_process -def: "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators, http://www.metacyc.org] +def: "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators] subset: gocheck_do_not_annotate subset: goslim_euk_cellular_processes_ribbon subset: goslim_pir subset: goslim_plant_ribbon subset: goslim_prokaryote_ribbon synonym: "primary metabolism" EXACT [] +xref: Wikipedia:Primary_metabolite is_a: GO:0008152 ! metabolic process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI @@ -77413,7 +79266,7 @@ is_a: GO:0044237 ! cellular metabolic process id: GO:0044258 name: intestinal lipid catabolic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown into fatty acids and monoglycerides of lipids in the small intestine. Lipids are broken down by lipases released by the pancreas." [GOC:jl, http://www.emc.maricopa.edu/] +def: "The chemical reactions and pathways resulting in the breakdown into fatty acids and monoglycerides of lipids in the small intestine. Lipids are broken down by lipases released by the pancreas." [GOC:jl, PMID:7018485] synonym: "intestinal lipid breakdown" EXACT [] synonym: "intestinal lipid catabolism" EXACT [] synonym: "intestinal lipid degradation" EXACT [] @@ -77511,6 +79364,20 @@ relationship: part_of CL:0000000 ! cell created_by: jl creation_date: 2010-02-05T10:37:16Z +[Term] +id: GO:0044304 +name: main axon +namespace: cellular_component +def: "The main axonal trunk, as opposed to the collaterals; i.e., excluding collaterals, terminal, spines, or dendrites." [NIF_Subcellular:sao1596975044] +synonym: "axon shaft" RELATED [PMID:11264310, PMID:24312009] +synonym: "axon trunk" EXACT [] +synonym: "axonal shaft" RELATED [PMID:11264310, PMID:24312009] +xref: NIF_Subcellular:sao1596975044 +is_a: GO:0110165 ! cellular anatomical entity +relationship: part_of GO:0030424 ! axon +created_by: jl +creation_date: 2010-02-05T03:48:17Z + [Term] id: GO:0044342 name: type B pancreatic cell proliferation @@ -77586,6 +79453,16 @@ relationship: results_in_assembly_of GO:0031514 ! motile cilium created_by: krc creation_date: 2015-02-06T17:23:23Z +[Term] +id: GO:0044464 +name: obsolete cell part +namespace: cellular_component +def: "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +synonym: "cellular subcomponent" EXACT [NIF_Subcellular:sao628508602] +synonym: "protoplast" RELATED [GOC:mah] +is_obsolete: true + [Term] id: GO:0044550 name: secondary metabolite biosynthetic process @@ -77823,6 +79700,50 @@ is_a: GO:0002376 ! immune system process relationship: has_participant CL:0000084 ! T cell relationship: part_of GO:0030217 ! T cell differentiation +[Term] +id: GO:0045087 +name: innate immune response +namespace: biological_process +alt_id: GO:0002226 +def: "Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens." [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_sensu] +synonym: "innate immunity" EXACT [GOC:pg] +synonym: "nonspecific immune response" EXACT [] +xref: Wikipedia:Innate_immune_system +is_a: GO:0006955 ! immune response +is_a: GO:0140546 ! defense response to symbiont +relationship: never_in_taxon NCBITaxon_Union:0000023 + +[Term] +id: GO:0045088 +name: regulation of innate immune response +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection." [GOC:ebc] +is_a: GO:0002831 ! regulation of response to biotic stimulus +is_a: GO:0031347 ! regulation of defense response +is_a: GO:0032101 ! regulation of response to external stimulus +is_a: GO:0050776 ! regulation of immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0045087 ! innate immune response +relationship: regulates GO:0045087 ! innate immune response + +[Term] +id: GO:0045089 +name: positive regulation of innate immune response +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection." [GOC:ebc] +synonym: "stimulation of innate immune response" NARROW [] +synonym: "up regulation of innate immune response" EXACT [] +synonym: "up-regulation of innate immune response" EXACT [] +synonym: "upregulation of innate immune response" EXACT [] +is_a: GO:0002833 ! positive regulation of response to biotic stimulus +is_a: GO:0031349 ! positive regulation of defense response +is_a: GO:0032103 ! positive regulation of response to external stimulus +is_a: GO:0045088 ! regulation of innate immune response +is_a: GO:0050778 ! positive regulation of immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0045087 ! innate immune response +relationship: positively_regulates GO:0045087 ! innate immune response + [Term] id: GO:0045095 name: keratin filament @@ -77890,7 +79811,6 @@ namespace: biological_process def: "The directed movement of azoles, heterocyclic compounds found in many biologically important substances, across a lipid bilayer, across a membrane." [GOC:go_curators, ISBN:3527307206, Wikipedia:Azole] synonym: "azole transport" RELATED [] is_a: GO:0055085 ! transmembrane transport -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:68452 ! azole @@ -80188,6 +82108,24 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0060047 ! heart contraction relationship: positively_regulates GO:0060047 ! heart contraction +[Term] +id: GO:0045824 +name: negative regulation of innate immune response +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the innate immune response." [GOC:go_curators] +synonym: "down regulation of innate immune response" EXACT [] +synonym: "down-regulation of innate immune response" EXACT [] +synonym: "downregulation of innate immune response" EXACT [] +synonym: "inhibition of innate immune response" NARROW [] +is_a: GO:0002832 ! negative regulation of response to biotic stimulus +is_a: GO:0031348 ! negative regulation of defense response +is_a: GO:0032102 ! negative regulation of response to external stimulus +is_a: GO:0045088 ! regulation of innate immune response +is_a: GO:0050777 ! negative regulation of immune response +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0045087 ! innate immune response +relationship: negatively_regulates GO:0045087 ! innate immune response + [Term] id: GO:0045827 name: negative regulation of isoprenoid metabolic process @@ -81091,6 +83029,53 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0006719 ! juvenile hormone catabolic process relationship: regulates GO:0006719 ! juvenile hormone catabolic process +[Term] +id: GO:0045953 +name: negative regulation of natural killer cell mediated cytotoxicity +namespace: biological_process +def: "Any process that stops, prevents, or reduces the rate of natural killer mediated cytotoxicity." [GOC:add, ISBN:0781735149] +synonym: "down regulation of natural killer cell mediated cytotoxicity" EXACT [] +synonym: "down-regulation of natural killer cell mediated cytotoxicity" EXACT [] +synonym: "downregulation of natural killer cell mediated cytotoxicity" EXACT [] +synonym: "inhibition of natural killer cell mediated cytotoxicity" NARROW [] +synonym: "negative regulation of natural killer cell mediated cell death" EXACT [] +synonym: "negative regulation of natural killer cell mediated cell killing" EXACT [] +synonym: "negative regulation of natural killer cell mediated cytolysis" RELATED [] +synonym: "negative regulation of NK cell mediated cell death" EXACT [] +synonym: "negative regulation of NK cell mediated cell killing" EXACT [] +synonym: "negative regulation of NK cell mediated cytolysis" RELATED [] +synonym: "negative regulation of NK cell mediated cytotoxicity" EXACT [] +is_a: GO:0001911 ! negative regulation of leukocyte mediated cytotoxicity +is_a: GO:0002716 ! negative regulation of natural killer cell mediated immunity +is_a: GO:0042269 ! regulation of natural killer cell mediated cytotoxicity +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity +relationship: negatively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity + +[Term] +id: GO:0045954 +name: positive regulation of natural killer cell mediated cytotoxicity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity." [GOC:add, ISBN:0781735149] +synonym: "activation of natural killer cell mediated cytotoxicity" NARROW [] +synonym: "positive regulation of natural killer cell mediated cell death" EXACT [] +synonym: "positive regulation of natural killer cell mediated cell killing" EXACT [] +synonym: "positive regulation of natural killer cell mediated cytolysis" RELATED [] +synonym: "positive regulation of NK cell mediated cell death" EXACT [] +synonym: "positive regulation of NK cell mediated cell killing" EXACT [] +synonym: "positive regulation of NK cell mediated cytolysis" RELATED [] +synonym: "positive regulation of NK cell mediated cytotoxicity" EXACT [] +synonym: "stimulation of natural killer cell mediated cytotoxicity" NARROW [] +synonym: "up regulation of natural killer cell mediated cytotoxicity" EXACT [] +synonym: "up-regulation of natural killer cell mediated cytotoxicity" EXACT [] +synonym: "upregulation of natural killer cell mediated cytotoxicity" EXACT [] +is_a: GO:0001912 ! positive regulation of leukocyte mediated cytotoxicity +is_a: GO:0002717 ! positive regulation of natural killer cell mediated immunity +is_a: GO:0042269 ! regulation of natural killer cell mediated cytotoxicity +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity +relationship: positively_regulates GO:0042267 ! natural killer cell mediated cytotoxicity + [Term] id: GO:0045963 name: negative regulation of dopamine metabolic process @@ -81589,7 +83574,6 @@ synonym: "nucleobase biosynthesis" EXACT [] synonym: "nucleobase formation" EXACT [] synonym: "nucleobase synthesis" EXACT [] is_a: GO:0009112 ! nucleobase metabolic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:18282 ! nucleobase @@ -81604,7 +83588,6 @@ synonym: "nucleobase breakdown" EXACT [] synonym: "nucleobase catabolism" EXACT [] synonym: "nucleobase degradation" EXACT [] is_a: GO:0009112 ! nucleobase metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:18282 ! nucleobase @@ -81706,7 +83689,6 @@ synonym: "aldehyde formation" EXACT [] synonym: "aldehyde synthesis" EXACT [] is_a: GO:0006081 ! cellular aldehyde metabolic process is_a: GO:0044249 ! cellular biosynthetic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:17478 ! aldehyde relationship: has_primary_output CHEBI:17478 ! aldehyde @@ -81721,7 +83703,6 @@ synonym: "aldehyde catabolism" EXACT [] synonym: "aldehyde degradation" EXACT [] is_a: GO:0006081 ! cellular aldehyde metabolic process is_a: GO:0044248 ! cellular catabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:17478 ! aldehyde relationship: has_primary_input CHEBI:17478 ! aldehyde @@ -81736,7 +83717,6 @@ synonym: "phenol-containing compound biosynthesis" EXACT [] synonym: "phenol-containing compound formation" EXACT [] synonym: "phenol-containing compound synthesis" EXACT [] is_a: GO:0018958 ! phenol-containing compound metabolic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process is_a: GO:1901617 ! organic hydroxy compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:33853 ! phenols @@ -81801,7 +83781,6 @@ synonym: "toluene formation" EXACT [] synonym: "toluene synthesis" EXACT [] is_a: GO:0018970 ! toluene metabolic process is_a: GO:0120251 ! hydrocarbon biosynthetic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:17578 ! toluene relationship: has_primary_output CHEBI:17578 ! toluene @@ -81974,8 +83953,8 @@ def: "The chemical reactions and pathways resulting in the breakdown of organoph synonym: "organophosphate breakdown" EXACT [] synonym: "organophosphate catabolism" EXACT [] synonym: "organophosphate degradation" EXACT [] +is_a: GO:0009056 ! catabolic process is_a: GO:0019637 ! organophosphate metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:25710 ! organophosphorus compound relationship: has_primary_input CHEBI:25710 ! organophosphorus compound @@ -82524,7 +84503,7 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organophosphorus stimulus. Organophosphorus is a compound containing phosphorus bound to an organic molecule; several organophosphorus compounds are used as insecticides, and they are highly toxic cholinesterase inhibitors." [ISBN:0721662544] synonym: "organophosphorus resistance" RELATED [] synonym: "organophosphorus susceptibility/resistance" RELATED [] -is_a: GO:0010033 ! response to organic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:25710 ! organophosphorus compound relationship: has_primary_input CHEBI:25710 ! organophosphorus compound @@ -85257,6 +87236,58 @@ subset: goslim_pir synonym: "tissue remodelling" EXACT [] is_a: GO:0032501 ! multicellular organismal process +[Term] +id: GO:0048773 +name: erythrophore differentiation +namespace: biological_process +def: "The process in which a relatively unspecialized cell acquires the specialized features of an erythrophore cell. Erythrophores are pigment cells derived from the neural crest. They contain pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives them an orange to red appearance." [GOC:jid, GOC:mh] +synonym: "erythrophore cell differentiation" EXACT [] +is_a: GO:0050931 ! pigment cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000574 ! erythrophore +relationship: results_in_acquisition_of_features_of CL:0000574 ! erythrophore + +[Term] +id: GO:0048778 +name: regulation of erythrophore differentiation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of erythrophore differentiation." [GOC:mh] +is_a: GO:0050932 ! regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0048773 ! erythrophore differentiation +relationship: regulates GO:0048773 ! erythrophore differentiation + +[Term] +id: GO:0048779 +name: negative regulation of erythrophore differentiation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of erythrophore differentiation." [GOC:mh] +synonym: "down regulation of erythrophore differentiation" EXACT [] +synonym: "down-regulation of erythrophore differentiation" EXACT [] +synonym: "downregulation of erythrophore differentiation" EXACT [] +synonym: "inhibition of erythrophore differentiation" NARROW [] +is_a: GO:0048778 ! regulation of erythrophore differentiation +is_a: GO:0050941 ! negative regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0048773 ! erythrophore differentiation +relationship: negatively_regulates GO:0048773 ! erythrophore differentiation + +[Term] +id: GO:0048780 +name: positive regulation of erythrophore differentiation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of erythrophore differentiation." [GOC:mh] +synonym: "activation of erythrophore differentiation" NARROW [] +synonym: "stimulation of erythrophore differentiation" NARROW [] +synonym: "up regulation of erythrophore differentiation" EXACT [] +synonym: "up-regulation of erythrophore differentiation" EXACT [] +synonym: "upregulation of erythrophore differentiation" EXACT [] +is_a: GO:0048778 ! regulation of erythrophore differentiation +is_a: GO:0050942 ! positive regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0048773 ! erythrophore differentiation +relationship: positively_regulates GO:0048773 ! erythrophore differentiation + [Term] id: GO:0048785 name: hatching gland development @@ -85267,6 +87298,47 @@ intersection_of: GO:0048856 ! anatomical structure development intersection_of: results_in_development_of UBERON:0002538 ! hatching gland relationship: results_in_development_of UBERON:0002538 ! hatching gland +[Term] +id: GO:0048786 +name: presynaptic active zone +namespace: cellular_component +def: "A specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, and a specialized cortical cytoskeletal matrix." [GOC:dh, GOC:dl, GOC:ef, GOC:jid, GOC:pr, PMID:3152289] +subset: goslim_synapse +synonym: "pre-synaptic active zone" EXACT [] +synonym: "pre-synaptic active zone component" NARROW [NIF_Subcellular:sao1911631652] +synonym: "presynaptic specialization" EXACT [] +xref: NIF_Subcellular:sao792027222 +is_a: GO:0110165 ! cellular anatomical entity +relationship: part_of GO:0045202 ! synapse +relationship: part_of GO:0098793 ! presynapse + +[Term] +id: GO:0048788 +name: cytoskeleton of presynaptic active zone +namespace: cellular_component +def: "The specialized cytoskeletal matrix of the presynaptic active zone. It has specialized functions in organizing synaptic events such as immobilisation or translocation of synaptic vesicles, and assembling active zone components. It is believed to form a molecular scaffold that organizes neurotransmitter release sites." [GOC:dh, GOC:dl, GOC:ef, GOC:jid, NIF_Subcellular:sao1470121605, PMID:10944438] +synonym: "active zone cytomatrix" EXACT [] +synonym: "CAZ" NARROW [] +synonym: "pre-synaptic cytoskeletal matrix assembled at active zones" EXACT [] +synonym: "pre-synaptic dense body" NARROW [NIF_Subcellular:sao1111202255, PMID:12575947] +synonym: "pre-synaptic ribbon" RELATED [ISBN:0716723808, NIF_Subcellular:sao1488888179] +synonym: "presynaptic cytomatrix assembled at active zones" EXACT [] +synonym: "presynaptic cytoskeletal matrix" EXACT syngo_official_label [] +synonym: "presynaptic cytoskeletal matrix assembled at active zones" EXACT [] +synonym: "presynaptic dense body" NARROW [PMID:16709774] +synonym: "presynaptic ribbon" RELATED [ISBN:0716723808, NIF_Subcellular:sao1488888179] +synonym: "ribbon" RELATED [NIF_Subcellular:sao1111202255, PMID:12575947] +synonym: "synaptic ribbon" NARROW [PMID:19264728] +synonym: "T-bar" NARROW [PMID:20127822] +synonym: "T-bar ribbon" NARROW [PMID:16384719] +xref: NIF_Subcellular:sao1470121605 +is_a: GO:0030863 ! cortical cytoskeleton +is_a: GO:0099569 ! presynaptic cytoskeleton +intersection_of: GO:0030863 ! cortical cytoskeleton +intersection_of: part_of GO:0098831 ! presynaptic active zone cytoplasmic component +relationship: part_of GO:0048786 ! presynaptic active zone +relationship: part_of GO:0098831 ! presynaptic active zone cytoplasmic component + [Term] id: GO:0048793 name: pronephros development @@ -87681,6 +89753,50 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: regulates GO:0050931 ! pigment cell differentiation relationship: regulates GO:0050931 ! pigment cell differentiation +[Term] +id: GO:0050935 +name: iridophore differentiation +namespace: biological_process +def: "The process in which a relatively unspecialized cell acquires the specialized features of an iridophore. Iridophores are pigment cells derived from the neural crest. They contain guanidine or other purine crystals deposited in stacks called reflecting platets or iridisomes. This gives them a silver, gold, or iridescent appearance." [GOC:jid, GOC:mh, PMID:11858836] +synonym: "iridophore cell differentiation" EXACT [] +is_a: GO:0050931 ! pigment cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000431 ! iridophore +relationship: results_in_acquisition_of_features_of CL:0000431 ! iridophore + +[Term] +id: GO:0050936 +name: xanthophore differentiation +namespace: biological_process +def: "The process in which a relatively unspecialized cell acquires the specialized features of a xanthophore cell. Xanthophores are pigment cells derived from the neural crest. They contain pteridine and/or carotenoid pigments in structures called pterinosomes or xanthosomes. This makes them yellow to orange in appearance." [GOC:jid, GOC:mh, PMID:11858836] +comment: Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. +synonym: "xanthophore cell differentiation" EXACT [] +is_a: GO:0050931 ! pigment cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0000430 ! xanthophore cell +relationship: results_in_acquisition_of_features_of CL:0000430 ! xanthophore cell + +[Term] +id: GO:0050937 +name: regulation of iridophore differentiation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of iridophore differentiation." [GOC:ai] +is_a: GO:0050932 ! regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0050935 ! iridophore differentiation +relationship: regulates GO:0050935 ! iridophore differentiation + +[Term] +id: GO:0050938 +name: regulation of xanthophore differentiation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of xanthophore differentiation." [GOC:ai] +comment: Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. +is_a: GO:0050932 ! regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0050936 ! xanthophore differentiation +relationship: regulates GO:0050936 ! xanthophore differentiation + [Term] id: GO:0050941 name: negative regulation of pigment cell differentiation @@ -87714,6 +89830,70 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0050931 ! pigment cell differentiation relationship: positively_regulates GO:0050931 ! pigment cell differentiation +[Term] +id: GO:0050943 +name: negative regulation of iridophore differentiation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of iridophore differentiation." [GOC:ai] +synonym: "down regulation of iridophore differentiation" EXACT [] +synonym: "down-regulation of iridophore differentiation" EXACT [] +synonym: "downregulation of iridophore differentiation" EXACT [] +synonym: "inhibition of iridophore differentiation" NARROW [] +is_a: GO:0050937 ! regulation of iridophore differentiation +is_a: GO:0050941 ! negative regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0050935 ! iridophore differentiation +relationship: negatively_regulates GO:0050935 ! iridophore differentiation + +[Term] +id: GO:0050944 +name: negative regulation of xanthophore differentiation +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of xanthophore differentiation." [GOC:ai] +comment: Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. +synonym: "down regulation of xanthophore differentiation" EXACT [] +synonym: "down-regulation of xanthophore differentiation" EXACT [] +synonym: "downregulation of xanthophore differentiation" EXACT [] +synonym: "inhibition of xanthophore differentiation" NARROW [] +is_a: GO:0050938 ! regulation of xanthophore differentiation +is_a: GO:0050941 ! negative regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0050936 ! xanthophore differentiation +relationship: negatively_regulates GO:0050936 ! xanthophore differentiation + +[Term] +id: GO:0050945 +name: positive regulation of iridophore differentiation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of iridophore differentiation." [GOC:ai] +synonym: "activation of iridophore differentiation" NARROW [] +synonym: "stimulation of iridophore differentiation" NARROW [] +synonym: "up regulation of iridophore differentiation" EXACT [] +synonym: "up-regulation of iridophore differentiation" EXACT [] +synonym: "upregulation of iridophore differentiation" EXACT [] +is_a: GO:0050937 ! regulation of iridophore differentiation +is_a: GO:0050942 ! positive regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0050935 ! iridophore differentiation +relationship: positively_regulates GO:0050935 ! iridophore differentiation + +[Term] +id: GO:0050946 +name: positive regulation of xanthophore differentiation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of xanthophore differentiation." [GOC:ai] +comment: Note that this term refers to xanthophores in the sense of specialized pigment-producing cells, and should not be confused with the cellular component term 'xanthophore ; GO:0031633', which refers to a subcellular structure. +synonym: "activation of xanthophore differentiation" NARROW [] +synonym: "stimulation of xanthophore differentiation" NARROW [] +synonym: "up regulation of xanthophore differentiation" EXACT [] +synonym: "up-regulation of xanthophore differentiation" EXACT [] +synonym: "upregulation of xanthophore differentiation" EXACT [] +is_a: GO:0050938 ! regulation of xanthophore differentiation +is_a: GO:0050942 ! positive regulation of pigment cell differentiation +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0050936 ! xanthophore differentiation +relationship: positively_regulates GO:0050936 ! xanthophore differentiation + [Term] id: GO:0050951 name: sensory perception of temperature stimulus @@ -87760,7 +89940,7 @@ is_a: GO:0050952 ! sensory perception of electrical stimulus id: GO:0050957 name: equilibrioception namespace: biological_process -def: "The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion." [http://www.medterms.com] +def: "The series of events required for an organism to receive an orientational stimulus, convert it to a molecular signal, and recognize and characterize the signal. Equilibrioception refers to a combination of processes by which an organism can perceive its orientation with respect to gravity. In animals, stimuli come from labyrinth system of the inner ears, monitoring the direction of motion; visual stimuli, with information on orientation and motion; pressure receptors, which tell the organism which body surfaces are in contact with the ground; and proprioceptive cues, which report which parts of the body are in motion." [PMID:29303967] synonym: "sensory perception of orientation with respect to gravity" EXACT [] xref: Wikipedia:Equilibrioception is_a: GO:0007600 ! sensory perception @@ -90363,7 +92543,7 @@ relationship: has_primary_input GO:0031982 ! vesicle id: GO:0051649 name: establishment of localization in cell namespace: biological_process -def: "Any process, occuring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." [GOC:ai, GOC:dos, GOC:dph, GOC:tb] +def: "Any process, occurring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." [GOC:ai, GOC:dos, GOC:dph, GOC:tb] synonym: "establishment of cellular localization" RELATED [GOC:dph, GOC:tb] synonym: "establishment of intracellular localization" NARROW [] synonym: "establishment of localisation in cell" EXACT [GOC:mah] @@ -91289,7 +93469,6 @@ name: imidazole-containing compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton." [GOC:curators] synonym: "imidazole metabolism" EXACT [] -is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:24780 ! imidazoles @@ -91304,7 +93483,6 @@ synonym: "imidazole breakdown" EXACT [] synonym: "imidazole catabolism" EXACT [] synonym: "imidazole degradation" EXACT [] is_a: GO:0052803 ! imidazole-containing compound metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:24780 ! imidazoles @@ -91796,7 +93974,7 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoprotein particle stimulus." [GOC:BHF, GOC:rl] synonym: "response to lipoprotein particle stimulus" EXACT [GOC:dos] is_a: GO:0009719 ! response to endogenous stimulus -is_a: GO:0010033 ! response to organic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:6495 ! lipoprotein relationship: has_primary_input CHEBI:6495 ! lipoprotein @@ -92019,11 +94197,22 @@ relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of GO:0062009 ! secondary palate development relationship: results_in_development_of UBERON:0001733 ! soft palate +[Term] +id: GO:0060034 +name: notochord cell differentiation +namespace: biological_process +def: "The process in which relatively unspecialized cells acquire specialized structural and/or functional features cells that make up the notochord. Differentiation includes the processes involved in commitment of a cell to a notochord cell fate." [GOC:dph] +is_a: GO:0030154 ! cell differentiation +intersection_of: GO:0030154 ! cell differentiation +intersection_of: results_in_acquisition_of_features_of CL:0007005 ! notochordal cell +relationship: part_of GO:0030903 ! notochord development +relationship: results_in_acquisition_of_features_of CL:0007005 ! notochordal cell + [Term] id: GO:0060037 name: pharyngeal system development namespace: biological_process -def: "The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the stucture it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GOC:dph] +def: "The process whose specific outcome is the progression of the pharyngeal system over time, from its formation to the mature structure. The pharyngeal system is a transient embryonic complex that is specific to vertebrates. It comprises the pharyngeal arches, bulges of tissues of mesoderm and neural crest derivation through which pass nerves and pharyngeal arch arteries. The arches are separated internally by pharyngeal pouches, evaginations of foregut endoderm, and externally by pharyngeal clefts, invaginations of surface ectoderm. The development of the system ends when the structure it contributes to are forming: the thymus, thyroid, parathyroids, maxilla, mandible, aortic arch, cardiac outflow tract, external and middle ear." [GOC:dph] is_a: GO:0048731 ! system development intersection_of: GO:0048856 ! anatomical structure development intersection_of: results_in_development_of UBERON:0008814 ! pharyngeal arch system @@ -92210,7 +94399,7 @@ relationship: results_in_development_of UBERON:0000995 ! uterus id: GO:0060066 name: oviduct development namespace: biological_process -def: "The reproductive developmental process whose specific outcome is the progression of an oviduct over time, from its formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism." [GOC:dph, GOC:ebc, http://www.thefreedictionary.com/oviduct] +def: "The reproductive developmental process whose specific outcome is the progression of an oviduct over time, from its formation to the mature structure. An oviduct is a tube through which an ova passes from the ovary to the uterus, or from the ovary to the outside of the organism." [GOC:dph, GOC:ebc, PMID:22918811, PMID:27875265] synonym: "fallopian tube development" NARROW [GOC:bf] synonym: "Mullerian tract development" RELATED [] is_a: GO:0035295 ! tube development @@ -92849,7 +95038,7 @@ id: GO:0060271 name: cilium assembly namespace: biological_process alt_id: GO:0042384 -def: "The assembly of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole." [GOC:BHF, GOC:cilia, GOC:dph, GOC:kmv, GOC:pr, GOC:vw, ISBN:0198506732, PMID:13978319, PMID:27350441, Reactome:R-HSA-5617833.2] +def: "The assembly of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole." [GOC:BHF, GOC:cilia, GOC:dph, GOC:kmv, GOC:pr, GOC:vw, ISBN:0198506732, PMID:13978319, PMID:27350441] comment: Note that we deem cilium and microtubule-based flagellum to be equivalent. synonym: "ciliogenesis" EXACT [] synonym: "cilium biogenesis" RELATED [GOC:mah] @@ -92857,7 +95046,6 @@ synonym: "cilium formation" EXACT [] synonym: "cilium morphogenesis" RELATED [] synonym: "cilium organization" RELATED [GOC:dph] synonym: "microtubule-based flagellum assembly" EXACT [] -xref: Reactome:R-HSA-5617833.2 is_a: GO:0044782 ! cilium organization is_a: GO:0070925 ! organelle assembly is_a: GO:0120031 ! plasma membrane bounded cell projection assembly @@ -93199,7 +95387,6 @@ namespace: biological_process alt_id: GO:1903717 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ammonium stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:23509267] synonym: "response to ammonia" EXACT [] -is_a: GO:0010035 ! response to inorganic substance is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:28938 ! ammonium @@ -93418,6 +95605,16 @@ intersection_of: results_in_morphogenesis_of UBERON:0002385 ! muscle tissue relationship: part_of GO:0048644 ! muscle organ morphogenesis relationship: results_in_morphogenesis_of UBERON:0002385 ! muscle tissue +[Term] +id: GO:0060417 +name: yolk +namespace: cellular_component +def: "The cytoplasmic part that serves as a nutrient reserve or energy source for the developing embryo." [GOC:dph, GOC:tb, PMID:18046696] +is_a: GO:0110165 ! cellular anatomical entity +relationship: in_taxon NCBITaxon:6072 {all_only="true"} ! Eumetazoa +relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +relationship: part_of GO:0005737 ! cytoplasm + [Term] id: GO:0060419 name: heart growth @@ -100938,6 +103135,65 @@ intersection_of: GO:0065007 ! biological regulation intersection_of: positively_regulates GO:0070242 ! thymocyte apoptotic process relationship: positively_regulates GO:0070242 ! thymocyte apoptotic process +[Term] +id: GO:0070246 +name: natural killer cell apoptotic process +namespace: biological_process +def: "Any apoptotic process in a natural killer cell, a lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation." [CL:0000623, GOC:add, GOC:mtg_apoptosis, PMID:15728472] +synonym: "natural killer cell apoptosis" NARROW [] +synonym: "NK cell apoptosis" EXACT [GOC:add] +is_a: GO:0070227 ! lymphocyte apoptotic process +intersection_of: GO:0006915 ! apoptotic process +intersection_of: occurs_in CL:0000623 ! natural killer cell +relationship: occurs_in CL:0000623 ! natural killer cell + +[Term] +id: GO:0070247 +name: regulation of natural killer cell apoptotic process +namespace: biological_process +def: "Any process that modulates the occurrence or rate of natural killer cell death by apoptotic process." [GOC:add, GOC:mtg_apoptosis, ISBN:0781765196] +synonym: "regulation of natural killer cell apoptosis" NARROW [] +synonym: "regulation of NK cell apoptosis" EXACT [GOC:add] +is_a: GO:0070228 ! regulation of lymphocyte apoptotic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0070246 ! natural killer cell apoptotic process +relationship: regulates GO:0070246 ! natural killer cell apoptotic process + +[Term] +id: GO:0070248 +name: negative regulation of natural killer cell apoptotic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell death by apoptotic process." [GOC:add, GOC:mtg_apoptosis, ISBN:0781765196] +synonym: "down regulation of natural killer cell apoptosis" EXACT [GOC:add] +synonym: "down-regulation of natural killer cell apoptosis" EXACT [GOC:add] +synonym: "downregulation of natural killer cell apoptosis" EXACT [GOC:add] +synonym: "inhibition of natural killer cell apoptosis" NARROW [GOC:add] +synonym: "negative regulation of natural killer cell apoptosis" NARROW [] +synonym: "negative regulation of NK cell apoptosis" EXACT [GOC:add] +is_a: GO:0070229 ! negative regulation of lymphocyte apoptotic process +is_a: GO:0070247 ! regulation of natural killer cell apoptotic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0070246 ! natural killer cell apoptotic process +relationship: negatively_regulates GO:0070246 ! natural killer cell apoptotic process + +[Term] +id: GO:0070249 +name: positive regulation of natural killer cell apoptotic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell death by apoptotic process." [GOC:add, GOC:mtg_apoptosis, ISBN:0781765196] +synonym: "activation of natural killer cell apoptosis" NARROW [GOC:add] +synonym: "positive regulation of natural killer cell apoptosis" NARROW [] +synonym: "positive regulation of NK cell apoptosis" EXACT [GOC:add] +synonym: "stimulation of natural killer cell apoptosis" NARROW [GOC:add] +synonym: "up regulation of natural killer cell apoptosis" EXACT [GOC:add] +synonym: "up-regulation of natural killer cell apoptosis" EXACT [GOC:add] +synonym: "upregulation of natural killer cell apoptosis" EXACT [GOC:add] +is_a: GO:0070230 ! positive regulation of lymphocyte apoptotic process +is_a: GO:0070247 ! regulation of natural killer cell apoptotic process +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0070246 ! natural killer cell apoptotic process +relationship: positively_regulates GO:0070246 ! natural killer cell apoptotic process + [Term] id: GO:0070253 name: somatostatin secretion @@ -101774,6 +104030,73 @@ relationship: results_in_assembly_of GO:0043226 ! organelle created_by: mah creation_date: 2009-09-15T03:00:51Z +[Term] +id: GO:0070942 +name: neutrophil mediated cytotoxicity +namespace: biological_process +def: "The directed killing of a target cell by a neutrophil." [GOC:add, ISBN:0781765196] +synonym: "neutrophil mediated cell killing" EXACT [GOC:add] +is_a: GO:0001909 ! leukocyte mediated cytotoxicity +is_a: GO:0002446 ! neutrophil mediated immunity +intersection_of: GO:0001906 ! cell killing +intersection_of: process_has_causal_agent CL:0000775 ! neutrophil +relationship: process_has_causal_agent CL:0000775 ! neutrophil +created_by: mah +creation_date: 2009-10-01T01:49:30Z + +[Term] +id: GO:0070948 +name: regulation of neutrophil mediated cytotoxicity +namespace: biological_process +def: "Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a target cell, the directed killing of a target cell by a neutrophil." [GOC:add, GOC:mah] +synonym: "regulation of neutrophil mediated cell killing" EXACT [GOC:add] +is_a: GO:0001910 ! regulation of leukocyte mediated cytotoxicity +is_a: GO:0002886 ! regulation of myeloid leukocyte mediated immunity +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0070942 ! neutrophil mediated cytotoxicity +relationship: regulates GO:0070942 ! neutrophil mediated cytotoxicity +created_by: mah +creation_date: 2009-10-01T02:14:36Z + +[Term] +id: GO:0070954 +name: negative regulation of neutrophil mediated cytotoxicity +namespace: biological_process +def: "Any process that decreases the frequency, rate or extent of the directed killing of a target cell by a neutrophil." [GOC:add, GOC:mah] +synonym: "down regulation of neutrophil mediated cytotoxicity" EXACT [GOC:mah] +synonym: "down-regulation of neutrophil mediated cytotoxicity" EXACT [GOC:mah] +synonym: "downregulation of neutrophil mediated cytotoxicity" EXACT [GOC:mah] +synonym: "inhibition of neutrophil mediated cytotoxicity" NARROW [GOC:mah] +synonym: "negative regulation of neutrophil mediated cell killing" EXACT [GOC:add] +is_a: GO:0001911 ! negative regulation of leukocyte mediated cytotoxicity +is_a: GO:0002887 ! negative regulation of myeloid leukocyte mediated immunity +is_a: GO:0070948 ! regulation of neutrophil mediated cytotoxicity +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0070942 ! neutrophil mediated cytotoxicity +relationship: negatively_regulates GO:0070942 ! neutrophil mediated cytotoxicity +created_by: mah +creation_date: 2009-10-01T02:20:17Z + +[Term] +id: GO:0070960 +name: positive regulation of neutrophil mediated cytotoxicity +namespace: biological_process +def: "Any process that increases the frequency, rate or extent of the directed killing of a target cell by a neutrophil." [GOC:add, GOC:mah] +synonym: "activation of neutrophil mediated cytotoxicity" NARROW [GOC:mah] +synonym: "positive regulation of neutrophil mediated cell killing" EXACT [GOC:add] +synonym: "stimulation of neutrophil mediated cytotoxicity" NARROW [GOC:mah] +synonym: "up regulation of neutrophil mediated cytotoxicity" EXACT [GOC:mah] +synonym: "up-regulation of neutrophil mediated cytotoxicity" EXACT [GOC:mah] +synonym: "upregulation of neutrophil mediated cytotoxicity" EXACT [GOC:mah] +is_a: GO:0001912 ! positive regulation of leukocyte mediated cytotoxicity +is_a: GO:0002888 ! positive regulation of myeloid leukocyte mediated immunity +is_a: GO:0070948 ! regulation of neutrophil mediated cytotoxicity +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0070942 ! neutrophil mediated cytotoxicity +relationship: positively_regulates GO:0070942 ! neutrophil mediated cytotoxicity +created_by: mah +creation_date: 2009-10-01T02:28:49Z + [Term] id: GO:0070977 name: bone maturation @@ -101930,16 +104253,6 @@ relationship: has_primary_input CHEBI:28044 ! phenylalanine created_by: mah creation_date: 2009-12-03T02:09:36Z -[Term] -id: GO:0071241 -name: cellular response to inorganic substance -namespace: biological_process -def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus." [GOC:mah] -is_a: GO:0010035 ! response to inorganic substance -is_a: GO:0070887 ! cellular response to chemical stimulus -created_by: mah -creation_date: 2009-12-03T02:35:49Z - [Term] id: GO:0071242 name: cellular response to ammonium ion @@ -101961,7 +104274,6 @@ name: cellular response to carbon dioxide namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon dioxide (CO2) stimulus." [GOC:mah] is_a: GO:0010037 ! response to carbon dioxide -is_a: GO:0071241 ! cellular response to inorganic substance is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus intersection_of: has_primary_input CHEBI:16526 ! carbon dioxide @@ -101977,7 +104289,7 @@ def: "Any process that results in a change in state or activity of a cell (in te synonym: "cellular response to heavy metal" NARROW [GOC:mah] synonym: "cellular response to metal" EXACT [GOC:mah] is_a: GO:0010038 ! response to metal ion -is_a: GO:0071241 ! cellular response to inorganic substance +is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus intersection_of: has_primary_input CHEBI:25213 ! metal cation relationship: has_primary_input CHEBI:25213 ! metal cation @@ -102012,23 +104324,12 @@ relationship: has_primary_input CHEBI:24875 ! iron cation created_by: mah creation_date: 2009-12-10T03:57:22Z -[Term] -id: GO:0071310 -name: cellular response to organic substance -namespace: biological_process -def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus." [GOC:mah] -is_a: GO:0010033 ! response to organic substance -is_a: GO:0070887 ! cellular response to chemical stimulus -created_by: mah -creation_date: 2009-12-10T04:46:04Z - [Term] id: GO:0071311 name: cellular response to acetate namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus." [GOC:mah] is_a: GO:0010034 ! response to acetate -is_a: GO:0071310 ! cellular response to organic substance is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus intersection_of: has_primary_input CHEBI:30089 ! acetate @@ -102070,7 +104371,6 @@ name: cellular response to carbohydrate stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus." [GOC:mah] is_a: GO:0009743 ! response to carbohydrate -is_a: GO:0071310 ! cellular response to organic substance is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus intersection_of: has_primary_input CHEBI:16646 ! carbohydrate @@ -102138,7 +104438,6 @@ name: cellular response to cytokine stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus." [GOC:mah] is_a: GO:0034097 ! response to cytokine -is_a: GO:0071310 ! cellular response to organic substance created_by: mah creation_date: 2009-12-11T02:41:12Z @@ -102258,7 +104557,7 @@ name: cellular response to lipid namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus." [GOC:mah] is_a: GO:0033993 ! response to lipid -is_a: GO:0071310 ! cellular response to organic substance +is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus intersection_of: has_primary_input CHEBI:18059 ! lipid relationship: has_primary_input CHEBI:18059 ! lipid @@ -102286,7 +104585,7 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus." [GOC:mah] synonym: "cellular response to organic cyclic substance" EXACT [GOC:mah] is_a: GO:0014070 ! response to organic cyclic compound -is_a: GO:0071310 ! cellular response to organic substance +is_a: GO:0070887 ! cellular response to chemical stimulus intersection_of: GO:0070887 ! cellular response to chemical stimulus intersection_of: has_primary_input CHEBI:33832 ! organic cyclic compound relationship: has_primary_input CHEBI:33832 ! organic cyclic compound @@ -102300,7 +104599,6 @@ namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond." [GOC:mah] synonym: "cellular response to organic nitrogen" EXACT [GOC:mah] is_a: GO:0010243 ! response to organonitrogen compound -is_a: GO:0071310 ! cellular response to organic substance is_a: GO:0071495 ! cellular response to endogenous stimulus is_a: GO:1901699 ! cellular response to nitrogen compound intersection_of: GO:0070887 ! cellular response to chemical stimulus @@ -102734,35 +105032,6 @@ relationship: results_in_maturation_of UBERON:0003050 ! olfactory placode created_by: mah creation_date: 2010-03-02T01:10:54Z -[Term] -id: GO:0071702 -name: organic substance transport -namespace: biological_process -def: "The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon." [GOC:mah] -is_a: GO:0006810 ! transport -intersection_of: GO:0006810 ! transport -intersection_of: has_primary_input CHEBI:50860 ! organic molecular entity -relationship: has_primary_input CHEBI:50860 ! organic molecular entity -created_by: mah -creation_date: 2010-03-08T02:15:14Z - -[Term] -id: GO:0071704 -name: organic substance metabolic process -namespace: biological_process -def: "The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon." [GOC:mah] -subset: gocheck_do_not_annotate -synonym: "organic molecular entity metabolic process" EXACT [] -synonym: "organic molecular entity metabolism" EXACT [] -synonym: "organic substance metabolism" EXACT [] -is_a: GO:0008152 ! metabolic process -intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:50860 ! organic molecular entity -relationship: has_primary_input_or_output CHEBI:50860 ! organic molecular entity -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: mah -creation_date: 2010-03-08T03:32:18Z - [Term] id: GO:0071705 name: nitrogen compound transport @@ -102964,7 +105233,6 @@ comment: Note that this term is not intended for use in annotating lateral movem synonym: "protein membrane transport" EXACT [] is_a: GO:0045184 ! establishment of protein localization is_a: GO:0055085 ! transmembrane transport -is_a: GO:0071702 ! organic substance transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:36080 ! protein intersection_of: results_in_transport_across GO:0016020 ! membrane @@ -103097,7 +105365,6 @@ def: "Any process that results in a change in state or activity of a cell or an comment: Note that epinephrine and norepinephrine are ligands for the same receptors, and there are multiple adrenergic receptors. synonym: "response to noradrenaline stimulus" EXACT [GOC:mah] synonym: "response to norepinephrine stimulus" EXACT [GOC:dos] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901698 ! response to nitrogen compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:72587 ! (R)-noradrenaline(1+) @@ -103190,8 +105457,6 @@ synonym: "DNA biosynthesis" EXACT [GOC:mah] synonym: "DNA formation" EXACT [GOC:mah] synonym: "DNA synthesis" EXACT [GOC:mah] is_a: GO:0006259 ! DNA metabolic process -is_a: GO:0009059 ! macromolecule biosynthetic process -is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process is_a: GO:0141187 ! nucleic acid biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:16991 ! deoxyribonucleic acid @@ -103240,7 +105505,7 @@ creation_date: 2010-10-18T03:44:18Z id: GO:0072001 name: renal system development namespace: biological_process -def: "The process whose specific outcome is the progression of the renal system over time, from its formation to the mature structure. The renal system maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels." [GOC:mtg_kidney_jan10, GOC:yaf, http://en.wikibooks.org/wiki/Human_Physiology/The_Urinary_System] +def: "The process whose specific outcome is the progression of the renal system over time, from its formation to the mature structure. The renal system maintains fluid balance and contributes to electrolyte balance, acid/base balance, and disposal of nitrogenous waste products. In humans, the renal system comprises a pair of kidneys, a pair of ureters, urinary bladder, urethra, sphincter muscle and associated blood vessels." [GOC:mtg_kidney_jan10, GOC:yaf, PMID:6996269] subset: gocheck_do_not_annotate synonym: "urinary system development" BROAD [GOC:yaf] synonym: "urinary tract development" BROAD [GOC:yaf, PMID:17881463] @@ -106141,7 +108406,6 @@ namespace: biological_process def: "The directed movement of modified amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah] subset: gocheck_do_not_annotate synonym: "amino acid derivative transport" EXACT [] -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:83821 ! amino acid derivative @@ -106278,8 +108542,8 @@ synonym: "toluene and derivative catabolic process" EXACT [GOC:mah] synonym: "toluene-containing compound breakdown" EXACT [GOC:mah] synonym: "toluene-containing compound catabolism" EXACT [GOC:mah] synonym: "toluene-containing compound degradation" EXACT [GOC:mah] +is_a: GO:0009056 ! catabolic process is_a: GO:0072490 ! toluene-containing compound metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:27024 ! toluenes relationship: has_primary_input CHEBI:27024 ! toluenes @@ -106307,7 +108571,6 @@ namespace: biological_process def: "The chemical reactions and pathways involving a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof." [GOC:mah] synonym: "purine and derivative metabolic process" EXACT [] synonym: "purine-containing compound metabolism" EXACT [GOC:mah] -is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901564 ! organonitrogen compound metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:26401 ! purines @@ -106326,7 +108589,6 @@ synonym: "purine-containing compound biosynthesis" EXACT [GOC:mah] synonym: "purine-containing compound formation" EXACT [GOC:mah] synonym: "purine-containing compound synthesis" EXACT [GOC:mah] is_a: GO:0072521 ! purine-containing compound metabolic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process is_a: GO:1901566 ! organonitrogen compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:26401 ! purines @@ -106344,7 +108606,6 @@ synonym: "purine-containing compound breakdown" EXACT [GOC:mah] synonym: "purine-containing compound catabolism" EXACT [GOC:mah] synonym: "purine-containing compound degradation" EXACT [GOC:mah] is_a: GO:0072521 ! purine-containing compound metabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process is_a: GO:1901565 ! organonitrogen compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:26401 ! purines @@ -106360,7 +108621,6 @@ def: "The process in which a purine-containing compound is transported across a comment: Note that this term is not intended for use in annotating lateral movement within membranes. synonym: "purine-containing compound membrane transport" EXACT [] is_a: GO:0055085 ! transmembrane transport -is_a: GO:0071702 ! organic substance transport is_a: GO:0071705 ! nitrogen compound transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:26401 ! purines @@ -107860,7 +110120,7 @@ creation_date: 2010-03-12T04:08:26Z id: GO:0090300 name: positive regulation of neural crest formation namespace: biological_process -def: "Any process that increases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation procedes." [GOC:tb] +def: "Any process that increases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds." [GOC:tb] is_a: GO:0010718 ! positive regulation of epithelial to mesenchymal transition is_a: GO:0090299 ! regulation of neural crest formation intersection_of: GO:0065007 ! biological regulation @@ -107873,7 +110133,7 @@ creation_date: 2010-03-12T04:08:26Z id: GO:0090301 name: negative regulation of neural crest formation namespace: biological_process -def: "Any process that decreases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation procedes." [GOC:tb] +def: "Any process that decreases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds." [GOC:tb] is_a: GO:0010719 ! negative regulation of epithelial to mesenchymal transition is_a: GO:0090299 ! regulation of neural crest formation intersection_of: GO:0065007 ! biological regulation @@ -108041,8 +110301,8 @@ id: GO:0090407 name: organophosphate biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the biosynthesis of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose." [GOC:chem_mtg] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0019637 ! organophosphate metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:25710 ! organophosphorus compound relationship: has_primary_output CHEBI:25710 ! organophosphorus compound @@ -108770,7 +111030,6 @@ namespace: biological_process alt_id: GO:1990335 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus." [GOC:pr, PMID:24014527] synonym: "process resulting in tolerance to alcohol" NARROW [] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:30879 ! alcohol @@ -108783,7 +111042,6 @@ id: GO:0097306 name: cellular response to alcohol namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus." [GOC:pr] -is_a: GO:0071310 ! cellular response to organic substance is_a: GO:0097305 ! response to alcohol is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus @@ -109225,11 +111483,10 @@ creation_date: 2016-03-29T17:39:45Z id: GO:0097711 name: ciliary basal body-plasma membrane docking namespace: biological_process -def: "The docking of a cytosolic centriole/basal body to the plasma membrane via the ciliary transition fibers. In some species this may happen via an intermediate step, by first docking to the ciliary vesicle via the ciliary transition fibers. The basal body-ciliary vesicle then relocates to the plasma membrane, followed by the ciliary vesicle fusing with the plasma membrane, effectively attaching the basal body to the plasma membrane." [GOC:cilia, PMID:13978319, PMID:23348840, PMID:23530209, PMID:25686250, PMID:26981235, Reactome:R-HSA-5620912.1] +def: "The docking of a cytosolic centriole/basal body to the plasma membrane via the ciliary transition fibers. In some species this may happen via an intermediate step, by first docking to the ciliary vesicle via the ciliary transition fibers. The basal body-ciliary vesicle then relocates to the plasma membrane, followed by the ciliary vesicle fusing with the plasma membrane, effectively attaching the basal body to the plasma membrane." [GOC:cilia, PMID:13978319, PMID:23348840, PMID:23530209, PMID:25686250, PMID:26981235] comment: Basal bodies in jawed vertebrates appear to first attach to a ciliary vesicle. It is unclear how specific this is to jawed vertebrates or if other organisms also employ this sequence. Some species like Giardia intestinalis do not relocate their basal bodies to the plasma membrane, but have their axonemes extend through the cytosol to then protrude out of the cell to form flagella. synonym: "anchoring of the basal body to the plasma membrane" RELATED [] synonym: "ciliary basal body docking" EXACT [] -xref: Reactome:R-HSA-5620912.1 is_a: GO:0140056 ! organelle localization by membrane tethering relationship: part_of GO:0060271 ! cilium assembly created_by: pr @@ -109239,7 +111496,7 @@ creation_date: 2016-08-05T16:12:33Z id: GO:0097712 name: vesicle targeting, trans-Golgi to periciliary membrane compartment namespace: biological_process -def: "The process in which vesicles formed at the trans-Golgi network are directed to the plasma membrane surrounding the base of the cilium, including the ciliary pocket, mediated by molecules at the vesicle membrane and target membrane surfaces." [GOC:cilia, PMID:20106869, PMID:23351793, PMID:24814148, PMID:26485645, Reactome:R-HSA-5620920.1] +def: "The process in which vesicles formed at the trans-Golgi network are directed to the plasma membrane surrounding the base of the cilium, including the ciliary pocket, mediated by molecules at the vesicle membrane and target membrane surfaces." [GOC:cilia, PMID:20106869, PMID:23351793, PMID:24814148, PMID:26485645] is_a: GO:0048199 ! vesicle targeting, to, from or within Golgi relationship: part_of GO:0060271 ! cilium assembly created_by: pr @@ -109445,6 +111702,18 @@ intersection_of: results_in_organization_of GO:0098522 ! neuromuscular junction relationship: part_of GO:0048741 ! skeletal muscle fiber development relationship: results_in_organization_of GO:0098522 ! neuromuscular junction of skeletal muscle fiber +[Term] +id: GO:0098531 +name: ligand-activated transcription factor activity +namespace: molecular_function +def: "A DNA-binding transcription factor activity regulated by binding to a ligand and that modulates the transcription of specific genes and gene sets. Examples include the lac and trp repressors in E.coli and steroid hormone receptors." [GOC:dos, PMID:25568920, PMID:8735275] +comment: For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity. +synonym: "direct ligand regulated sequence-specific DNA binding transcription factor activity" EXACT [] +synonym: "transcription factor activity, direct ligand regulated sequence-specific DNA binding" EXACT [] +is_a: GO:0003700 ! DNA-binding transcription factor activity +created_by: dos +creation_date: 2013-10-17T15:51:30Z + [Term] id: GO:0098542 name: defense response to other organism @@ -110234,6 +112503,18 @@ relationship: regulates GO:0007268 ! chemical synaptic transmission relationship: regulates GO:0050877 ! nervous system process relationship: regulates GO:0060079 ! excitatory postsynaptic potential +[Term] +id: GO:0098831 +name: presynaptic active zone cytoplasmic component +namespace: cellular_component +def: "A specialized region below the presynaptic membrane, characterized by electron-dense material, a specialized cytoskeletal matrix and accumulated (associated) synaptic vesicles." [GOC:dos] +subset: goslim_synapse +synonym: "cortex of presynaptic active zone" EXACT [] +synonym: "presynaptic zone cortex" EXACT [] +is_a: GO:0099738 ! cell cortex region +relationship: part_of GO:0045202 ! synapse +relationship: part_of GO:0048786 ! presynaptic active zone + [Term] id: GO:0098840 name: protein transport along microtubule @@ -110597,7 +112878,7 @@ relationship: results_in_transport_along GO:0005874 ! microtubule id: GO:0098960 name: postsynaptic neurotransmitter receptor activity namespace: molecular_function -def: "Neurotransmitter receptor activity occuring in the postsynaptic membrane during synaptic transmission." [GOC:dos, GOC:signaling] +def: "Neurotransmitter receptor activity occurring in the postsynaptic membrane during synaptic transmission." [GOC:dos, GOC:signaling] synonym: "neurotransmitter receptor activity involved in chemical synaptic transmission" EXACT [] is_a: GO:0030594 ! neurotransmitter receptor activity intersection_of: GO:0030594 ! neurotransmitter receptor activity @@ -110627,7 +112908,7 @@ relationship: results_in_transport_along GO:0005874 ! microtubule id: GO:0098962 name: regulation of postsynaptic neurotransmitter receptor activity namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity involved in synaptic transmission. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] +def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity involved in synaptic transmission. Modulation may be via an effect on ligand affinity, or effector function such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] subset: gocheck_do_not_annotate subset: goslim_synapse is_a: GO:0031644 ! regulation of nervous system process @@ -110886,7 +113167,7 @@ relationship: process_has_causal_agent CHEBI:60466 ! peptide zwitterion id: GO:0099083 name: retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission namespace: biological_process -def: "Modulation of synaptic transmittion by cell-cell signaling across the synaptic cleft from postsynapse to presynapse, mediated by a neuropeptide." [GOC:bf, GOC:dos, GOC:PARL, PMID:19448629] +def: "Modulation of synaptic transmission by cell-cell signaling across the synaptic cleft from postsynapse to presynapse, mediated by a neuropeptide." [GOC:bf, GOC:dos, GOC:PARL, PMID:19448629] comment: Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. subset: goslim_synapse is_a: GO:0099082 ! retrograde trans-synaptic signaling by neuropeptide @@ -110929,7 +113210,6 @@ def: "The transport of a protein driven by polymerization of a microtubule to wh is_a: GO:0007017 ! microtubule-based process is_a: GO:0045184 ! establishment of protein localization is_a: GO:0046907 ! intracellular transport -is_a: GO:0071702 ! organic substance transport is_a: GO:0099111 ! microtubule-based transport intersection_of: GO:0046907 ! intracellular transport intersection_of: has_part GO:0046785 ! microtubule polymerization @@ -111780,7 +114060,7 @@ relationship: results_in_transport_across GO:0005886 ! plasma membrane id: GO:0099601 name: regulation of neurotransmitter receptor activity namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity. Modulation may be via an effect on ligand affinity, or effector funtion such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] +def: "Any process that modulates the frequency, rate or extent of neurotransmitter receptor activity. Modulation may be via an effect on ligand affinity, or effector function such as ion selectivity or pore opening/closing in ionotropic receptors." [GOC:dos] subset: gocheck_do_not_annotate subset: goslim_synapse is_a: GO:0010469 ! regulation of signaling receptor activity @@ -112356,7 +114636,6 @@ id: GO:0110096 name: cellular response to aldehyde namespace: biological_process def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aldehyde stimulus." [GOC:vw, PMID:25656103] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901701 ! cellular response to oxygen-containing compound intersection_of: GO:0070887 ! cellular response to chemical stimulus intersection_of: has_primary_input CHEBI:17478 ! aldehyde @@ -113026,8 +115305,8 @@ synonym: "hydrocarbon anabolism" EXACT [GOC:krc] synonym: "hydrocarbon biosynthesis" EXACT [GOC:krc] synonym: "hydrocarbon formation" EXACT [GOC:krc] synonym: "hydrocarbon synthesis" EXACT [GOC:krc] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0120252 ! hydrocarbon metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:24632 ! hydrocarbon relationship: has_primary_output CHEBI:24632 ! hydrocarbon @@ -113041,7 +115320,7 @@ name: hydrocarbon metabolic process namespace: biological_process def: "The chemical reactions and pathways involving a hydrocarbon, a compound consisting of carbon and hydrogen only." [GOC:krc, Wikipedia:Hydrocarbon] synonym: "hydrocarbon metabolism" EXACT [GOC:krc] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:24632 ! hydrocarbon relationship: has_primary_input_or_output CHEBI:24632 ! hydrocarbon @@ -113057,8 +115336,8 @@ def: "The chemical reactions and pathways resulting in the breakdown of a hydroc synonym: "hydrocarbon breakdown" EXACT [GOC:krc] synonym: "hydrocarbon catabolism" EXACT [GOC:krc] synonym: "hydrocarbon degradation" EXACT [GOC:krc] +is_a: GO:0009056 ! catabolic process is_a: GO:0120252 ! hydrocarbon metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:24632 ! hydrocarbon relationship: has_primary_input CHEBI:24632 ! hydrocarbon @@ -113073,7 +115352,7 @@ namespace: biological_process def: "The chemical reactions and pathways involving an olefinic compound, any compound which contains a carbon-carbon double bond (aka C=C)." [GOC:krc] synonym: "alkene substituted compound metabolic process" EXACT [] synonym: "alkene substituted compound metabolism" EXACT [] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:78840 ! olefinic compound relationship: has_primary_input_or_output CHEBI:78840 ! olefinic compound @@ -113091,8 +115370,8 @@ synonym: "alkene substituted compound anabolism" EXACT [GOC:krc] synonym: "alkene substituted compound biosynthesis" EXACT [GOC:krc] synonym: "alkene substituted compound biosynthetic process" EXACT [GOC:krc] synonym: "alkene substituted compound synthesis" EXACT [GOC:krc] +is_a: GO:0009058 ! biosynthetic process is_a: GO:0120254 ! olefinic compound metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:78840 ! olefinic compound relationship: has_primary_output CHEBI:78840 ! olefinic compound @@ -113109,8 +115388,8 @@ synonym: "alkene substituted compound breakdown" EXACT [GOC:krc] synonym: "alkene substituted compound catabolic process" EXACT [GOC:krc] synonym: "alkene substituted compound catabolism" EXACT [GOC:krc] synonym: "alkene substituted compound degradation" EXACT [GOC:krc] +is_a: GO:0009056 ! catabolic process is_a: GO:0120254 ! olefinic compound metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:78840 ! olefinic compound relationship: has_primary_input CHEBI:78840 ! olefinic compound @@ -114117,11 +116396,14 @@ namespace: biological_process def: "The biosynthetic process resulting in the formation of a nucleic acid." [GOC:dph, GOC:tb] comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. subset: gocheck_do_not_annotate +is_a: GO:0009059 ! macromolecule biosynthetic process +is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process is_a: GO:0090304 ! nucleic acid metabolic process -intersection_of: GO:0008152 ! metabolic process +intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:33696 ! nucleic acid relationship: has_primary_output CHEBI:33696 ! nucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27408" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27633" xsd:anyURI created_by: pg creation_date: 2024-03-25T07:33:40Z @@ -114132,20 +116414,25 @@ namespace: biological_process def: "The cellular DNA metabolic process resulting in the breakdown of a nucleic acid." [GOC:curators] comment: This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term. subset: gocheck_do_not_annotate +is_a: GO:0009057 ! macromolecule catabolic process +is_a: GO:0034655 ! nucleobase-containing compound catabolic process is_a: GO:0090304 ! nucleic acid metabolic process -intersection_of: GO:0008152 ! metabolic process +intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:33696 ! nucleic acid relationship: has_primary_input CHEBI:33696 ! nucleic acid property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27408" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27633" xsd:anyURI created_by: pg creation_date: 2024-03-25T07:35:06Z [Term] id: GO:0141193 -name: nuclear receptor signaling pathway +name: nuclear receptor-mediated signaling pathway namespace: biological_process -def: "The series of molecular signals initiated by a signaling molecule binding to its nuclear receptor inside the cell, and ending with the regulation of a downstream cellular process, e.g. transcription." [PMID:25614732] +def: "The series of molecular signals initiated by a signaling molecule binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription." [PMID:25614732] +synonym: "nuclear receptor signaling pathway" EXACT [] is_a: GO:0030522 ! intracellular receptor signaling pathway +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27599" xsd:anyURI created_by: pg creation_date: 2024-04-12T13:08:13Z @@ -114537,6 +116824,31 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i created_by: rynl creation_date: 2022-08-19T23:18:54Z +[Term] +id: GO:0160077 +name: lipid droplet fusion +namespace: biological_process +def: "The process by which a single lipid droplet is created from the fusion of two or more lipid droplets." [PMID:34508658, PMID:36477540] +is_a: GO:0034389 ! lipid droplet organization +is_a: GO:0048284 ! organelle fusion +intersection_of: GO:0009987 ! cellular process +intersection_of: results_in_fusion_of GO:0005811 ! lipid droplet +relationship: results_in_fusion_of GO:0005811 ! lipid droplet +created_by: rynl +creation_date: 2023-01-31T00:34:32Z + +[Term] +id: GO:0160078 +name: negative regulation of lipid droplet fusion +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of lipid droplet fusion." [PMID:36477540] +is_a: GO:0010639 ! negative regulation of organelle organization +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0160077 ! lipid droplet fusion +relationship: negatively_regulates GO:0160077 ! lipid droplet fusion +created_by: rynl +creation_date: 2023-01-31T00:52:25Z + [Term] id: GO:0160093 name: chordate pharynx development @@ -116823,7 +119135,7 @@ def: "The chemical reactions and pathways involving an acetate ester, any carbox synonym: "acetate ester metabolism" EXACT [GOC:TermGenie] synonym: "acetyl ester metabolic process" EXACT [CHEBI:47622] synonym: "acetyl ester metabolism" EXACT [CHEBI:47622] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:47622 ! acetate ester relationship: has_primary_input_or_output CHEBI:47622 ! acetate ester @@ -116841,8 +119153,8 @@ synonym: "acetate ester formation" EXACT [GOC:TermGenie] synonym: "acetate ester synthesis" EXACT [GOC:TermGenie] synonym: "acetyl ester biosynthesis" EXACT [CHEBI:47622] synonym: "acetyl ester biosynthetic process" EXACT [CHEBI:47622] +is_a: GO:0009058 ! biosynthetic process is_a: GO:1900619 ! acetate ester metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:47622 ! acetate ester relationship: has_primary_output CHEBI:47622 ! acetate ester @@ -116950,7 +119262,6 @@ synonym: "benzene catabolism" EXACT [GOC:TermGenie] synonym: "benzene degradation" EXACT [GOC:TermGenie] is_a: GO:0018910 ! benzene metabolic process is_a: GO:0120253 ! hydrocarbon catabolic process -is_a: GO:1901361 ! organic cyclic compound catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:16716 ! benzene relationship: has_primary_input CHEBI:16716 ! benzene @@ -116968,7 +119279,6 @@ synonym: "benzene formation" EXACT [GOC:TermGenie] synonym: "benzene synthesis" EXACT [GOC:TermGenie] is_a: GO:0018910 ! benzene metabolic process is_a: GO:0120251 ! hydrocarbon biosynthetic process -is_a: GO:1901362 ! organic cyclic compound biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:16716 ! benzene relationship: has_primary_output CHEBI:16716 ! benzene @@ -117127,7 +119437,7 @@ subset: goslim_generic subset: goslim_mouse subset: goslim_prokaryote synonym: "carbohydrate derivative metabolism" EXACT [GOC:TermGenie] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:63299 ! carbohydrate derivative relationship: has_primary_input_or_output CHEBI:63299 ! carbohydrate derivative @@ -117142,8 +119452,8 @@ def: "The chemical reactions and pathways resulting in the breakdown of carbohyd synonym: "carbohydrate derivative breakdown" EXACT [GOC:TermGenie] synonym: "carbohydrate derivative catabolism" EXACT [GOC:TermGenie] synonym: "carbohydrate derivative degradation" EXACT [GOC:TermGenie] +is_a: GO:0009056 ! catabolic process is_a: GO:1901135 ! carbohydrate derivative metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:63299 ! carbohydrate derivative relationship: has_primary_input CHEBI:63299 ! carbohydrate derivative @@ -117159,8 +119469,8 @@ synonym: "carbohydrate derivative anabolism" EXACT [GOC:TermGenie] synonym: "carbohydrate derivative biosynthesis" EXACT [GOC:TermGenie] synonym: "carbohydrate derivative formation" EXACT [GOC:TermGenie] synonym: "carbohydrate derivative synthesis" EXACT [GOC:TermGenie] +is_a: GO:0009058 ! biosynthetic process is_a: GO:1901135 ! carbohydrate derivative metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:63299 ! carbohydrate derivative relationship: has_primary_output CHEBI:63299 ! carbohydrate derivative @@ -117703,7 +120013,7 @@ id: GO:1901264 name: carbohydrate derivative transport namespace: biological_process def: "The directed movement of a carbohydrate derivative into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:bf, GOC:jl, GOC:TermGenie] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:63299 ! carbohydrate derivative relationship: has_primary_input CHEBI:63299 ! carbohydrate derivative @@ -117891,52 +120201,6 @@ relationship: negatively_regulates GO:0001944 ! vasculature development created_by: bf creation_date: 2012-09-06T09:17:24Z -[Term] -id: GO:1901360 -name: organic cyclic compound metabolic process -namespace: biological_process -def: "The chemical reactions and pathways involving organic cyclic compound." [GOC:TermGenie] -synonym: "organic cyclic compound metabolism" EXACT [GOC:TermGenie] -is_a: GO:0071704 ! organic substance metabolic process -intersection_of: GO:0008152 ! metabolic process -intersection_of: has_primary_input_or_output CHEBI:33832 ! organic cyclic compound -relationship: has_primary_input_or_output CHEBI:33832 ! organic cyclic compound -created_by: bf -creation_date: 2012-09-14T09:03:51Z - -[Term] -id: GO:1901361 -name: organic cyclic compound catabolic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of organic cyclic compound." [GOC:TermGenie] -synonym: "organic cyclic compound breakdown" EXACT [GOC:TermGenie] -synonym: "organic cyclic compound catabolism" EXACT [GOC:TermGenie] -synonym: "organic cyclic compound degradation" EXACT [GOC:TermGenie] -is_a: GO:1901360 ! organic cyclic compound metabolic process -is_a: GO:1901575 ! organic substance catabolic process -intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:33832 ! organic cyclic compound -relationship: has_primary_input CHEBI:33832 ! organic cyclic compound -created_by: bf -creation_date: 2012-09-14T09:05:04Z - -[Term] -id: GO:1901362 -name: organic cyclic compound biosynthetic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of organic cyclic compound." [GOC:TermGenie] -synonym: "organic cyclic compound anabolism" EXACT [GOC:TermGenie] -synonym: "organic cyclic compound biosynthesis" EXACT [GOC:TermGenie] -synonym: "organic cyclic compound formation" EXACT [GOC:TermGenie] -synonym: "organic cyclic compound synthesis" EXACT [GOC:TermGenie] -is_a: GO:1901360 ! organic cyclic compound metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process -intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:33832 ! organic cyclic compound -relationship: has_primary_output CHEBI:33832 ! organic cyclic compound -created_by: bf -creation_date: 2012-09-14T09:05:22Z - [Term] id: GO:1901363 name: heterocyclic compound binding @@ -117954,7 +120218,7 @@ id: GO:1901374 name: acetate ester transport namespace: biological_process def: "The directed movement of an acetate ester into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:TermGenie] -is_a: GO:0071702 ! organic substance transport +is_a: GO:0006810 ! transport intersection_of: GO:0006810 ! transport intersection_of: has_primary_input CHEBI:47622 ! acetate ester relationship: has_primary_input CHEBI:47622 ! acetate ester @@ -118327,7 +120591,6 @@ id: GO:1901425 name: response to formic acid namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a formic acid stimulus." [GOC:mengo_curators, GOC:TermGenie] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:15740 ! formate @@ -119019,7 +121282,7 @@ namespace: biological_process def: "The chemical reactions and pathways involving organonitrogen compound." [GOC:pr, GOC:TermGenie] subset: gocheck_do_not_annotate synonym: "organonitrogen compound metabolism" EXACT [GOC:TermGenie] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound relationship: has_primary_input_or_output CHEBI:35352 ! organonitrogen compound @@ -119036,8 +121299,8 @@ subset: gocheck_do_not_annotate synonym: "organonitrogen compound breakdown" EXACT [GOC:TermGenie] synonym: "organonitrogen compound catabolism" EXACT [GOC:TermGenie] synonym: "organonitrogen compound degradation" EXACT [GOC:TermGenie] +is_a: GO:0009056 ! catabolic process is_a: GO:1901564 ! organonitrogen compound metabolic process -is_a: GO:1901575 ! organic substance catabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:35352 ! organonitrogen compound relationship: has_primary_input CHEBI:35352 ! organonitrogen compound @@ -119055,8 +121318,8 @@ synonym: "organonitrogen compound anabolism" EXACT [GOC:TermGenie] synonym: "organonitrogen compound biosynthesis" EXACT [GOC:TermGenie] synonym: "organonitrogen compound formation" EXACT [GOC:TermGenie] synonym: "organonitrogen compound synthesis" EXACT [GOC:TermGenie] +is_a: GO:0009058 ! biosynthetic process is_a: GO:1901564 ! organonitrogen compound metabolic process -is_a: GO:1901576 ! organic substance biosynthetic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:35352 ! organonitrogen compound relationship: has_primary_output CHEBI:35352 ! organonitrogen compound @@ -119064,49 +121327,6 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i created_by: pr creation_date: 2012-11-04T15:18:00Z -[Term] -id: GO:1901575 -name: organic substance catabolic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of an organic substance, any molecular entity containing carbon." [GOC:pr, GOC:TermGenie] -subset: gocheck_do_not_annotate -synonym: "organic molecular entity catabolic process" EXACT [] -synonym: "organic substance breakdown" EXACT [] -synonym: "organic substance catabolism" EXACT [] -synonym: "organic substance degradation" EXACT [] -is_a: GO:0009056 ! catabolic process -is_a: GO:0071704 ! organic substance metabolic process -intersection_of: GO:0009056 ! catabolic process -intersection_of: has_primary_input CHEBI:50860 ! organic molecular entity -relationship: has_primary_input CHEBI:50860 ! organic molecular entity -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: pr -creation_date: 2012-11-05T11:04:36Z - -[Term] -id: GO:1901576 -name: organic substance biosynthetic process -namespace: biological_process -def: "The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon." [GOC:pr, GOC:TermGenie] -subset: gocheck_do_not_annotate -synonym: "organic molecular entity anabolism" EXACT [GOC:TermGenie] -synonym: "organic molecular entity biosynthesis" EXACT [GOC:TermGenie] -synonym: "organic molecular entity biosynthetic process" EXACT [] -synonym: "organic molecular entity formation" EXACT [GOC:TermGenie] -synonym: "organic molecular entity synthesis" EXACT [GOC:TermGenie] -synonym: "organic substance anabolism" EXACT [] -synonym: "organic substance biosynthesis" EXACT [] -synonym: "organic substance formation" EXACT [] -synonym: "organic substance synthesis" EXACT [] -is_a: GO:0009058 ! biosynthetic process -is_a: GO:0071704 ! organic substance metabolic process -intersection_of: GO:0009058 ! biosynthetic process -intersection_of: has_primary_output CHEBI:50860 ! organic molecular entity -relationship: has_primary_output CHEBI:50860 ! organic molecular entity -property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26424" xsd:anyURI -created_by: pr -creation_date: 2012-11-05T11:04:40Z - [Term] id: GO:1901577 name: regulation of alkane biosynthetic process @@ -119339,7 +121559,7 @@ name: organic hydroxy compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving organic hydroxy compound." [GOC:pr, GOC:TermGenie] synonym: "organic hydroxy compound metabolism" EXACT [GOC:TermGenie] -is_a: GO:0071704 ! organic substance metabolic process +is_a: GO:0008152 ! metabolic process intersection_of: GO:0008152 ! metabolic process intersection_of: has_primary_input_or_output CHEBI:33822 ! organic hydroxy compound relationship: has_primary_input_or_output CHEBI:33822 ! organic hydroxy compound @@ -119354,7 +121574,7 @@ def: "The chemical reactions and pathways resulting in the breakdown of organic synonym: "organic hydroxy compound breakdown" EXACT [GOC:TermGenie] synonym: "organic hydroxy compound catabolism" EXACT [GOC:TermGenie] synonym: "organic hydroxy compound degradation" EXACT [GOC:TermGenie] -is_a: GO:1901575 ! organic substance catabolic process +is_a: GO:0009056 ! catabolic process is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0009056 ! catabolic process intersection_of: has_primary_input CHEBI:33822 ! organic hydroxy compound @@ -119371,7 +121591,7 @@ synonym: "organic hydroxy compound anabolism" EXACT [GOC:TermGenie] synonym: "organic hydroxy compound biosynthesis" EXACT [GOC:TermGenie] synonym: "organic hydroxy compound formation" EXACT [GOC:TermGenie] synonym: "organic hydroxy compound synthesis" EXACT [GOC:TermGenie] -is_a: GO:1901576 ! organic substance biosynthetic process +is_a: GO:0009058 ! biosynthetic process is_a: GO:1901615 ! organic hydroxy compound metabolic process intersection_of: GO:0009058 ! biosynthetic process intersection_of: has_primary_output CHEBI:33822 ! organic hydroxy compound @@ -119551,7 +121771,7 @@ id: GO:1901652 name: response to peptide namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide stimulus." [GOC:pr, GOC:TermGenie] -is_a: GO:0010033 ! response to organic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:60466 ! peptide zwitterion relationship: has_primary_input CHEBI:60466 ! peptide zwitterion @@ -119578,7 +121798,6 @@ namespace: biological_process alt_id: GO:1990369 def: "A response that results in a state of tolerance to ketone." [GOC:mengo_curators, PMID:23356676] synonym: "process resulting in tolerance to ketone" NARROW [] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:17087 ! ketone @@ -122761,7 +124980,7 @@ namespace: biological_process alt_id: GO:1990373 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkane stimulus." [GO_REF:0000071, GOC:mengo_curators, GOC:TermGenie, PMID:22958739, PMID:23826995] synonym: "process resulting in tolerance to alkane" NARROW [] -is_a: GO:0010033 ! response to organic substance +is_a: GO:0042221 ! response to chemical intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:18310 ! alkane relationship: has_primary_input CHEBI:18310 ! alkane @@ -127623,6 +129842,40 @@ relationship: part_of GO:0014057 ! positive regulation of acetylcholine secretio created_by: kmv creation_date: 2015-03-19T15:28:47Z +[Term] +id: GO:1904071 +name: presynaptic active zone assembly +namespace: biological_process +def: "The aggregation, arrangement and bonding together of a set of components to form a presynaptic active zone. The presynaptic active zone is a specialized region of the plasma membrane and cell cortex of a presynaptic neuron; encompasses a region of the plasma membrane where synaptic vesicles dock and fuse, and a specialized cortical cytoskeletal matrix." [GO_REF:0000079, GOC:pr, GOC:TermGenie, PMID:10769383] +synonym: "pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "presynaptic active zone formation" EXACT [GOC:TermGenie] +is_a: GO:0022607 ! cellular component assembly +is_a: GO:1990709 ! presynaptic active zone organization +intersection_of: GO:0022607 ! cellular component assembly +intersection_of: results_in_assembly_of GO:0048786 ! presynaptic active zone +relationship: part_of GO:0099054 ! presynapse assembly +relationship: results_in_assembly_of GO:0048786 ! presynaptic active zone +created_by: pr +creation_date: 2015-03-20T10:36:27Z + +[Term] +id: GO:1904072 +name: presynaptic active zone disassembly +namespace: biological_process +def: "The disaggregation of a presynaptic active zone into its constituent components." [GO_REF:0000079, GOC:pr, GOC:TermGenie, ISBN:9780387325606] +synonym: "pre-synaptic active zone component disassembly" NARROW [GOC:TermGenie] +synonym: "pre-synaptic active zone disassembly" EXACT [GOC:TermGenie] +is_a: GO:0022411 ! cellular component disassembly +is_a: GO:1990709 ! presynaptic active zone organization +intersection_of: GO:0022411 ! cellular component disassembly +intersection_of: results_in_disassembly_of GO:0048786 ! presynaptic active zone +relationship: results_in_disassembly_of GO:0048786 ! presynaptic active zone +created_by: pr +creation_date: 2015-03-20T10:36:33Z + [Term] id: GO:1904073 name: regulation of trophectodermal cell proliferation @@ -129415,7 +131668,6 @@ name: response to glycoprotein namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glycoprotein stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:14597422] synonym: "response to glycoproteins" EXACT [] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus intersection_of: has_primary_input CHEBI:17089 ! glycoprotein @@ -132125,7 +134377,6 @@ id: GO:1905144 name: response to acetylcholine namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetylcholine stimulus." [GO_REF:0000071, GOC:TermGenie, PMID:21238497] -is_a: GO:0010033 ! response to organic substance is_a: GO:1901698 ! response to nitrogen compound is_a: GO:1901700 ! response to oxygen-containing compound intersection_of: GO:0050896 ! response to stimulus @@ -133932,6 +136183,109 @@ relationship: results_in_movement_of CL:0000235 ! macrophage created_by: sl creation_date: 2016-09-30T22:17:45Z +[Term] +id: GO:1905518 +name: regulation of presynaptic active zone assembly +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of presynaptic active zone assembly." [GO_REF:0000058, GOC:BHF, GOC:rl, GOC:TermGenie, PMID:15797875] +synonym: "regulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "regulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "regulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +is_a: GO:0051128 ! regulation of cellular component organization +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:1904071 ! presynaptic active zone assembly +relationship: regulates GO:1904071 ! presynaptic active zone assembly +created_by: rl +creation_date: 2016-10-01T09:37:51Z + +[Term] +id: GO:1905519 +name: negative regulation of presynaptic active zone assembly +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of presynaptic active zone assembly." [GO_REF:0000058, GOC:BHF, GOC:rl, GOC:TermGenie, PMID:15797875] +synonym: "down regulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "down regulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "down regulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "down regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "down regulation of presynaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "down regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "down-regulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "down-regulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "down-regulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "down-regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "down-regulation of presynaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "down-regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "downregulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "downregulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "downregulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "downregulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "downregulation of presynaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "downregulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "inhibition of pre-synaptic active zone assembly" NARROW [GOC:TermGenie] +synonym: "inhibition of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "inhibition of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "inhibition of pre-synaptic active zone formation" NARROW [GOC:TermGenie] +synonym: "inhibition of presynaptic active zone assembly" NARROW [GOC:TermGenie] +synonym: "inhibition of presynaptic active zone formation" NARROW [GOC:TermGenie] +synonym: "negative regulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "negative regulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "negative regulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "negative regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "negative regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +is_a: GO:1905518 ! regulation of presynaptic active zone assembly +is_a: GO:1905607 ! negative regulation of presynapse assembly +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:1904071 ! presynaptic active zone assembly +relationship: negatively_regulates GO:0099054 ! presynapse assembly +relationship: negatively_regulates GO:1904071 ! presynaptic active zone assembly +created_by: rl +creation_date: 2016-10-01T09:38:00Z + +[Term] +id: GO:1905520 +name: positive regulation of presynaptic active zone assembly +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of presynaptic active zone assembly." [GO_REF:0000058, GOC:BHF, GOC:rl, GOC:TermGenie, PMID:15797875] +synonym: "activation of pre-synaptic active zone assembly" NARROW [GOC:TermGenie] +synonym: "activation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "activation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "activation of pre-synaptic active zone formation" NARROW [GOC:TermGenie] +synonym: "activation of presynaptic active zone assembly" NARROW [GOC:TermGenie] +synonym: "activation of presynaptic active zone formation" NARROW [GOC:TermGenie] +synonym: "positive regulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "positive regulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "positive regulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "positive regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "positive regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "up regulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "up regulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "up regulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "up regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "up regulation of presynaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "up regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "up-regulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "up-regulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "up-regulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "up-regulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "up-regulation of presynaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "up-regulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "upregulation of pre-synaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "upregulation of pre-synaptic active zone component assembly" NARROW [GOC:TermGenie] +synonym: "upregulation of pre-synaptic active zone component formation" NARROW [GOC:TermGenie] +synonym: "upregulation of pre-synaptic active zone formation" EXACT [GOC:TermGenie] +synonym: "upregulation of presynaptic active zone assembly" EXACT [GOC:TermGenie] +synonym: "upregulation of presynaptic active zone formation" EXACT [GOC:TermGenie] +is_a: GO:1905518 ! regulation of presynaptic active zone assembly +is_a: GO:1905608 ! positive regulation of presynapse assembly +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:1904071 ! presynaptic active zone assembly +relationship: positively_regulates GO:0099054 ! presynapse assembly +relationship: positively_regulates GO:1904071 ! presynaptic active zone assembly +created_by: rl +creation_date: 2016-10-01T09:38:07Z + [Term] id: GO:1905521 name: regulation of macrophage migration @@ -134573,6 +136927,23 @@ relationship: results_in_disassembly_of GO:0005634 ! nucleus created_by: pr creation_date: 2016-11-14T13:38:57Z +[Term] +id: GO:1905691 +name: lipid droplet disassembly +namespace: biological_process +def: "The disaggregation of a lipid particle into its constituent components." [GO_REF:0000079, GOC:autophagy, GOC:pr, GOC:TermGenie] +synonym: "adiposome disassembly" EXACT [GOC:TermGenie] +synonym: "lipid body disassembly" EXACT [GOC:TermGenie] +synonym: "lipid droplet reserve breakdown" EXACT [PMID:30003614] +synonym: "lipid particle disassembly" EXACT [GOC:TermGenie] +is_a: GO:0034389 ! lipid droplet organization +is_a: GO:1903008 ! organelle disassembly +intersection_of: GO:0022411 ! cellular component disassembly +intersection_of: results_in_disassembly_of GO:0005811 ! lipid droplet +relationship: results_in_disassembly_of GO:0005811 ! lipid droplet +created_by: pr +creation_date: 2016-11-14T13:39:06Z + [Term] id: GO:1905720 name: cytoplasmic microtubule bundle @@ -135805,6 +138176,25 @@ relationship: results_in_transport_across GO:0005886 ! plasma membrane created_by: mah creation_date: 2013-02-07T13:01:29Z +[Term] +id: GO:1990044 +name: protein localization to lipid droplet +namespace: biological_process +def: "A process in which a protein is transported to, or maintained in, a location on or within a lipid droplet." [GOC:sart, PMID:22505614] +synonym: "protein localisation to adiposome" EXACT [] +synonym: "protein localisation to lipid body" EXACT [] +synonym: "protein localisation to lipid droplet" EXACT [] +synonym: "protein localisation to lipid particle" EXACT [] +synonym: "protein localization to adiposome" EXACT [] +synonym: "protein localization to lipid body" EXACT [] +synonym: "protein localization to lipid particle" EXACT [] +is_a: GO:0033365 ! protein localization to organelle +intersection_of: GO:0008104 ! protein localization +intersection_of: has_target_end_location GO:0005811 ! lipid droplet +relationship: has_target_end_location GO:0005811 ! lipid droplet +created_by: sart +creation_date: 2013-02-15T12:40:57Z + [Term] id: GO:1990048 name: anterograde neuronal dense core vesicle transport @@ -136066,6 +138456,20 @@ intersection_of: acts_on_population_of CL:1000488 ! cholangiocyte relationship: acts_on_population_of CL:1000488 ! cholangiocyte creation_date: 2015-03-16T23:23:50Z +[Term] +id: GO:1990709 +name: presynaptic active zone organization +namespace: biological_process +def: "A process that results in the assembly, arrangement of constituent parts, or disassembly of a presynaptic active zone." [GOC:pr, PMID:16865347, PMID:17068967] +synonym: "presynaptic active zone organisation" EXACT [] +is_a: GO:0016043 ! cellular component organization +intersection_of: GO:0009987 ! cellular process +intersection_of: results_in_organization_of GO:0048786 ! presynaptic active zone +relationship: part_of GO:0050808 ! synapse organization +relationship: results_in_organization_of GO:0048786 ! presynaptic active zone +created_by: pr +creation_date: 2015-03-20T10:16:24Z + [Term] id: GO:1990739 name: granulosa cell proliferation @@ -137812,8 +140216,8 @@ def: "Any process that modulates the frequency, rate or extent of glucocorticoid synonym: "regulation of glucocorticoid receptor signalling pathway" EXACT [GOC:obol] is_a: GO:0033143 ! regulation of intracellular steroid hormone receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0042921 ! intracellular glucocorticoid receptor signaling pathway -relationship: regulates GO:0042921 ! intracellular glucocorticoid receptor signaling pathway +intersection_of: regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway +relationship: regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway created_by: vk creation_date: 2011-01-18T04:38:10Z @@ -137826,8 +140230,8 @@ synonym: "negative regulation of glucocorticoid receptor signalling pathway" EXA is_a: GO:0033144 ! negative regulation of intracellular steroid hormone receptor signaling pathway is_a: GO:2000322 ! regulation of glucocorticoid receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0042921 ! intracellular glucocorticoid receptor signaling pathway -relationship: negatively_regulates GO:0042921 ! intracellular glucocorticoid receptor signaling pathway +intersection_of: negatively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway +relationship: negatively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway created_by: vk creation_date: 2011-01-18T04:38:43Z @@ -137840,8 +140244,8 @@ synonym: "positive regulation of glucocorticoid receptor signalling pathway" EXA is_a: GO:0033145 ! positive regulation of intracellular steroid hormone receptor signaling pathway is_a: GO:2000322 ! regulation of glucocorticoid receptor signaling pathway intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042921 ! intracellular glucocorticoid receptor signaling pathway -relationship: positively_regulates GO:0042921 ! intracellular glucocorticoid receptor signaling pathway +intersection_of: positively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway +relationship: positively_regulates GO:0042921 ! nuclear receptor-mediated glucocorticoid signaling pathway created_by: vk creation_date: 2011-01-18T04:39:05Z @@ -138430,6 +140834,44 @@ relationship: positively_regulates GO:0035736 ! cell proliferation involved in c created_by: bf creation_date: 2011-03-18T02:19:54Z +[Term] +id: GO:2000501 +name: regulation of natural killer cell chemotaxis +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of natural killer cell chemotaxis." [GOC:BHF] +is_a: GO:1901623 ! regulation of lymphocyte chemotaxis +intersection_of: GO:0065007 ! biological regulation +intersection_of: regulates GO:0035747 ! natural killer cell chemotaxis +relationship: regulates GO:0035747 ! natural killer cell chemotaxis +created_by: bf +creation_date: 2011-03-21T10:09:23Z + +[Term] +id: GO:2000502 +name: negative regulation of natural killer cell chemotaxis +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of natural killer cell chemotaxis." [GOC:BHF] +is_a: GO:1901624 ! negative regulation of lymphocyte chemotaxis +is_a: GO:2000501 ! regulation of natural killer cell chemotaxis +intersection_of: GO:0065007 ! biological regulation +intersection_of: negatively_regulates GO:0035747 ! natural killer cell chemotaxis +relationship: negatively_regulates GO:0035747 ! natural killer cell chemotaxis +created_by: bf +creation_date: 2011-03-21T10:09:32Z + +[Term] +id: GO:2000503 +name: positive regulation of natural killer cell chemotaxis +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of natural killer cell chemotaxis." [GOC:BHF] +is_a: GO:0140131 ! positive regulation of lymphocyte chemotaxis +is_a: GO:2000501 ! regulation of natural killer cell chemotaxis +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0035747 ! natural killer cell chemotaxis +relationship: positively_regulates GO:0035747 ! natural killer cell chemotaxis +created_by: bf +creation_date: 2011-03-21T10:09:38Z + [Term] id: GO:2000508 name: regulation of dendritic cell chemotaxis @@ -139435,6 +141877,22 @@ relationship: regulates GO:0007625 ! grooming behavior created_by: rl creation_date: 2011-07-14T04:48:12Z +[Term] +id: GO:2000825 +name: positive regulation of androgen receptor activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of androgen receptor activity." [GOC:obol] +subset: gocheck_do_not_annotate +is_a: GO:0006357 ! regulation of transcription by RNA polymerase II +is_a: GO:0051091 ! positive regulation of DNA-binding transcription factor activity +is_a: GO:2000273 ! positive regulation of signaling receptor activity +intersection_of: GO:0065007 ! biological regulation +intersection_of: positively_regulates GO:0004879 ! nuclear receptor activity +relationship: positively_regulates GO:0004879 ! nuclear receptor activity +relationship: regulates GO:0006366 ! transcription by RNA polymerase II +created_by: yaf +creation_date: 2011-07-15T10:56:14Z + [Term] id: GO:2000826 name: regulation of heart morphogenesis @@ -147720,6 +150178,24 @@ xref: IUPHARobj:1695 xref: PIRSF:PIRSF001954 is_a: PR:000000001 ! protein +[Term] +id: PR:000001381 +name: interleukin-2 receptor subunit beta +namespace: protein +def: "A protein that is a translation product of the human IL2RB gene or a 1:1 ortholog thereof." [PRO:CNA] +comment: Category=gene. Requested by=CL. +synonym: "CD122" EXACT [] +synonym: "high affinity IL-2 receptor subunit beta" EXACT [] +synonym: "IL-2 receptor subunit beta" EXACT [] +synonym: "IL-2R subunit beta" EXACT [] +synonym: "IL-2RB" EXACT [] +synonym: "IL15RB" RELATED Gene-based [] +synonym: "IL2RB" EXACT PRO-short-label [PRO:DNx] +synonym: "p70-75" EXACT [] +synonym: "p75" BROAD [PRO:DNx] +xref: IUPHARobj:1696 +is_a: PR:000000001 ! protein + [Term] id: PR:000001408 name: ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 @@ -150558,6 +153034,30 @@ intersection_of: only_in_taxon NCBITaxon:9031 ! Gallus gallus relationship: has_gene_template http://www.ncbi.nlm.nih.gov/gene/396453 relationship: only_in_taxon NCBITaxon:9031 ! Gallus gallus +[Term] +id: PR:P14784 +name: interleukin-2 receptor subunit beta (human) +namespace: protein +def: "An interleukin-2 receptor subunit beta that is encoded in the genome of human." [PRO:CNA, UniProtKB:P14784] +comment: Category=organism-gene. +synonym: "CD122 (human)" EXACT [UniProtKB:P14784] +synonym: "high affinity IL-2 receptor subunit beta (human)" EXACT [UniProtKB:P14784] +synonym: "hIL2RB" EXACT PRO-short-label [PRO:DNx] +synonym: "IL-2 receptor subunit beta (human)" EXACT [UniProtKB:P14784] +synonym: "IL-2R subunit beta (human)" EXACT [UniProtKB:P14784] +synonym: "IL-2RB (human)" EXACT [UniProtKB:P14784] +synonym: "IL15RB" RELATED Gene-based [UniProtKB:P14784] +synonym: "IL2RB" RELATED Gene-based [UniProtKB:P14784] +synonym: "interleukin-15 receptor subunit beta (human)" EXACT [UniProtKB:P14784] +synonym: "p70-75 (human)" EXACT [UniProtKB:P14784] +synonym: "p75 (human)" BROAD [UniProtKB:P14784] +xref: UniProtKB:P14784 +is_a: PR:000001381 ! interleukin-2 receptor subunit beta +is_a: PR:000029067 ! Homo sapiens protein +intersection_of: PR:000001381 ! interleukin-2 receptor subunit beta +intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens +relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens + [Term] id: PR:P15379 name: CD44 antigen (mouse) @@ -150772,6 +153272,27 @@ intersection_of: PR:000001879 ! leukosialin intersection_of: only_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: PR:P16297 +name: interleukin-2 receptor subunit beta (mouse) +namespace: protein +def: "An interleukin-2 receptor subunit beta that is encoded in the genome of mouse." [OMA:P16297, PRO:DNx] +comment: Category=organism-gene. +synonym: "CD122 (mouse)" EXACT [UniProtKB:P16297] +synonym: "high affinity IL-2 receptor subunit beta (mouse)" EXACT [UniProtKB:P16297] +synonym: "IL-2 receptor subunit beta (mouse)" EXACT [UniProtKB:P16297] +synonym: "IL-2R subunit beta (mouse)" EXACT [UniProtKB:P16297] +synonym: "IL-2RB (mouse)" EXACT [UniProtKB:P16297] +synonym: "Il2rb" RELATED Gene-based [UniProtKB:P16297] +synonym: "mIL2RB" EXACT PRO-short-label [PRO:DNx] +synonym: "p70-75 (mouse)" EXACT [UniProtKB:P16297] +xref: UniProtKB:P16297 +is_a: PR:000001381 ! interleukin-2 receptor subunit beta +is_a: PR:000029032 ! Mus musculus protein +intersection_of: PR:000001381 ! interleukin-2 receptor subunit beta +intersection_of: only_in_taxon NCBITaxon:10090 ! Mus musculus +relationship: only_in_taxon NCBITaxon:10090 ! Mus musculus + [Term] id: PR:P16406 name: glutamyl aminopeptidase (mouse) @@ -152852,7 +155373,9 @@ relationship: continuous_with UBERON:0000996 ! vagina relationship: contributes_to_morphology_of UBERON:0000995 ! uterus relationship: part_of UBERON:0000995 ! uterus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: external_definition "The narrow caudal end of the uterus that opens into the vagina. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001359", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/uterine+cervix"} property_value: has_relational_adjective "cervical" xsd:string property_value: homology_notes "The evolution of mammals is associated with radical changes in their reproductive biology, particularly the structure and function of the female reproductive organs. These changes include the evolution of the uterus, cervix, vagina, placenta and specialized cell types associated with each of those structures.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001359", ontology="VHOG", source="DOI:10.1098/rspb.2004.2848 Lynch VJ, Roth JJ, Takahashi K, Dunn CW, Nonaka DF, Stopper GF, Wagner GP, Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals. Proceedings of the Royal Society of London, Series B (2004)", source="http://bgee.unil.ch/"} @@ -152944,7 +155467,7 @@ name: chemosensory organ subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] -xref: FBbt:00005157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: capable_of GO:0007606 ! sensory perception of chemical stimulus @@ -153117,7 +155640,7 @@ xref: EHDAA2:0001445 xref: EHDAA:2893 xref: EMAPA:16665 xref: EV:0100335 -xref: FBbt:00005098 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005098 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9903 xref: GAID:715 xref: MA:0000218 @@ -153319,7 +155842,7 @@ xref: EMAPA:35305 xref: EV:0100129 xref: FMA:16018 xref: MA:0001582 -xref: MESH:D007515 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D007515 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32509 xref: SCTID:361339003 xref: TAO:0001260 @@ -153364,7 +155887,7 @@ xref: EMAPA:35328 xref: EV:0100093 xref: FMA:16017 xref: MA:0002415 -xref: MESH:D046790 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D046790 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32546 xref: SCTID:248202004 xref: TAO:0001249 @@ -153403,9 +155926,9 @@ synonym: "insect eye" RELATED [] synonym: "Komplexauge" RELATED [BTO:0001921] synonym: "zusammengesetztes Auge" RELATED [BTO:0001921] xref: BTO:0001921 -xref: FBbt:00004508 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004508 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000217 -xref: IDOMAL:0002421 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002421 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TGMA:0000024 xref: Wikipedia:Compound_eye is_a: UBERON:0015165 ! multi-unit eye @@ -153483,7 +156006,7 @@ xref: CALOHA:TS-2043 xref: EHDAA2:0001824 xref: EHDAA:500 xref: EMAPA:35955 -xref: FBbt:00005155 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005155 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:63 xref: HAO:0000930 xref: MA:0000017 @@ -153498,8 +156021,8 @@ intersection_of: UBERON:0000062 ! organ intersection_of: capable_of GO:0050906 ! detection of stimulus involved in sensory perception relationship: capable_of GO:0050906 ! detection of stimulus involved in sensory perception relationship: part_of UBERON:0001032 ! sensory system +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000021 @@ -153622,7 +156145,7 @@ xref: EFO:0000799 xref: EHDAA2:0003193 xref: EMAPA:37283 {source="MA:th"} xref: EV:0100155 -xref: FBbt:00007000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000144 xref: MAT:0000023 xref: MESH:D005121 @@ -153684,6 +156207,10 @@ relationship: in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0002465 ! lymphoid system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b8/Illu_lymph_node_structure.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI property_value: homology_notes "Lymph nodes that are associated with the lymphatic system have evolved in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001273", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.630", source="http://bgee.unil.ch/"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/650" xsd:anyURI @@ -153993,12 +156520,12 @@ relationship: has_part UBERON:0001136 ! mesothelium relationship: has_part UBERON:0002384 ! connective tissue relationship: part_of NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000060 ! anatomical wall +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Ens.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png" xsd:anyURI property_value: external_definition "A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005425", ontology="TAO", source="Wikipedia:Serous_membrane"} property_value: external_definition "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]" xsd:string {source="Wikipedia:Serous_membrane"} property_value: external_ontology_notes "in FMA, SM = mesothelium + connective tissue. It excludes the cavity. Serous sac = SM + cavity. Note that the SM is a subtype of wall in FMA." xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000043 @@ -154076,7 +156603,7 @@ xref: FMA:5888 xref: MA:0000231 xref: MA:0000232 xref: MAT:0000162 -xref: MESH:D005727 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005727 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000162 xref: NCIT:C12462 xref: SCTID:244455004 @@ -154150,6 +156677,7 @@ relationship: develops_from UBERON:0003869 ! presumptive ganglion relationship: immediate_transformation_of UBERON:0003869 {source="Bgee:AN"} ! presumptive ganglion relationship: part_of UBERON:0001016 ! nervous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system." xsd:string property_value: external_definition "A ganglion is a cluster of neurons. It is part of a nervous system. It may include glial cells. The neurons are arranged in a specific constellation: neuronal somata are concentrated at the surface, thus forming a cell cortex, and neurites are concentrated in the centre of the ganglion to form the neuropil. A ganglion is a distinct unit but several ganglia may be anterio-posteriorly joined by connectives or transversally by commissures" xsd:string {source="PMID:21062451"} property_value: external_definition "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010426", ontology="AAO", source="AAO:EJS"} @@ -154157,7 +156685,6 @@ property_value: external_definition "Structures containing a collection of nerve property_value: external_definition "Subdivision of nervous system which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord. Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion (adapted from Foundational Model of Anatomy)[NLXANAT:100302]." xsd:string {source="NLXANAT:100302"} property_value: has_relational_adjective "ganglionic" xsd:string property_value: homology_notes "Cranial sensory placodes are focused areas of the head ectoderm of vertebrates that contribute to the development of the cranial sense organs and their associated ganglia. Placodes have long been considered a key character of vertebrates, and their evolution is proposed to have been essential for the evolution of an active predatory lifestyle by early vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000156", ontology="VHOG", source="DOI:10.1016/j.ydbio.2005.02.021 Mazet F, Hutt JA, Milloz J, Millard J, Graham A, Shimeld SM, Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes. Developmental Biology (2005)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000046 @@ -154265,8 +156792,14 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/21/Gray747.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0000053 @@ -154437,7 +156970,7 @@ synonym: "ducts" RELATED OMO:0003004 [XAO:0004000] synonym: "exocrine duct" NARROW [] synonym: "exocrine gland duct" NARROW [] xref: AAO:0011123 -xref: FBbt:00100314 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100314 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:30320 xref: galen:Duct xref: NCIT:C12948 @@ -154490,9 +157023,14 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0004907 ! lower digestive tract relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: homology_notes "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000054", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.566", source="http://bgee.unil.ch/"} [Term] @@ -154525,7 +157063,7 @@ xref: BILA:0000003 xref: CARO:0000003 xref: EHDAA2:0003003 xref: EMAPA:0 -xref: FBbt:00007001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:305751 xref: FMA:67135 xref: GAID:781 @@ -154761,11 +157299,11 @@ relationship: immediately_preceded_by UBERON:0000069 ! larval stage relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota relationship: part_of UBERON:0000092 ! post-embryonic stage relationship: simultaneous_with GO:0035209 {notes="may be better to model pupal development as including the pre-pupal stage"} ! pupal development -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/562" xsd:anyURI property_value: taxon_notes "The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago" xsd:string @@ -154889,7 +157427,7 @@ def: "The surface (external) layer of ectoderm which begins to proliferate short subset: pheno_slim synonym: "surface (external) ectoderm" EXACT [] synonym: "surface ectoderm" EXACT [MP:0012532] -xref: BTO:0006242 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006242 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001968 xref: EHDAA:1494 xref: EHDAA:350 @@ -154966,7 +157504,7 @@ xref: EHDAA2:0001054 xref: EHDAA:8136 xref: EMAPA:17968 xref: EV:0100101 -xref: FBbt:00004927 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004927 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45664 xref: GAID:386 xref: HAO:0000505 @@ -154986,7 +157524,8 @@ intersection_of: part_of UBERON:0003101 ! male organism disjoint_from: UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0003101 ! male organism relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: homology_notes "By far, sexual reproduction is the more common pattern among living vertebrate forms and its widespread occurrence suggests that it is the plesiomorphic, or primitive, reproductive mode among the vertebrates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000725", ontology="VHOG", source="ISBN:978-0792383369 Lombardi J, Comparative vertebrate reproduction (1998) p.43", source="http://bgee.unil.ch/"} [Term] @@ -155438,9 +157977,9 @@ xref: XAO:0000208 is_a: UBERON:0002050 ! embryonic structure relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} ! Danio rerio relationship: part_of UBERON:0004735 {source="https://orcid.org/0000-0003-3308-6245"} ! archenteron +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "A slit-like invagination on the dorsal side of the blastula surface of the embryo where the mesoderm and endoderm move inside the embryo at gatrulation.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000045", ontology="AAO", source="AAO:BJB"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: seeAlso "https://github.com/obophenotype/uberon/issues/660" xsd:anyURI property_value: taxon_notes "In protostome development, the first opening in development, the blastopore, becomes the animal's mouth; In deuterostome development, the blastopore becomes the animal's anus" xsd:string @@ -155562,7 +158101,7 @@ xref: BILS:0000106 xref: EFO:0001322 xref: EHDAA:27 xref: FBdv:00005288 -xref: IDOMAL:0000302 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000302 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12601 xref: PdumDv:0000100 xref: VHOG:0000745 @@ -155856,7 +158395,7 @@ def: "Cell layer consisting of lining cells that separates the central nervous s synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: http://uri.neuinfo.org/nif/nifstd/nlx_subcell_100205 -xref: MESH:D001812 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001812 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13194 xref: UMLS:C0005854 {source="ncithesaurus:Blood-Brain_Barrier"} xref: Wikipedia:Blood-brain_barrier @@ -155899,7 +158438,7 @@ synonym: "funiculus" EXACT [] synonym: "nerve fiber bundle" EXACT [FBbt:00005099] synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 -xref: FBbt:00005099 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005099 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NLX:147821 is_a: UBERON:0005162 ! multi cell part structure relationship: has_part GO:0043005 ! neuron projection @@ -156256,7 +158795,7 @@ xref: EMAPA:18256 xref: FMA:15703 xref: galen:AnalCanal xref: MA:0000330 -xref: MESH:D001003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12375 xref: SCTID:245438008 xref: UMLS:C0227411 {source="ncithesaurus:Anal_Canal"} @@ -156436,7 +158975,7 @@ xref: EFO:0000825 xref: EHDAA2:0001326 xref: EHDAA:542 xref: EMAPA:16262 -xref: FBbt:00003126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:49184 xref: GAID:75 xref: galen:Mouth @@ -156509,7 +159048,7 @@ xref: EMAPA:18399 xref: EV:0100057 xref: FMA:20292 xref: HAO:0000669 -xref: MESH:D009055 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009055 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12421 xref: SCTID:181220002 xref: TAO:0001027 @@ -156648,7 +159187,7 @@ id: UBERON:0000175 name: pleural effusion def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] xref: ENVO:02000033 -xref: MESH:D010996 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D010996 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ncithesaurus:Pleural_Effusion is_a: UBERON:0001087 ! pleural fluid relationship: located_in UBERON:0002402 ! pleural cavity @@ -156723,11 +159262,11 @@ relationship: part_of UBERON:0002390 ! hematopoietic system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000046", ontology="AAO"} property_value: curator_notes "This class excludes blood analogues, such as the insect analog of blood. See UBERON:0000179 haemolymphatic fluid." xsd:string +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: external_definition "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000007", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Highly specialized circulating tissue consisting of several types of cells suspended in a fluid medium known as plasma.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000046", ontology="AAO", source="AAO:LAP"} property_value: homology_notes "Recent findings strongly suggest that the molecular pathways involved in the development and function of blood cells are highly conserved among vertebrates and various invertebrates phyla. (...) There is now good reason to believe that, in vertebrates and invertebrates alike, blood cell lineages diverge from a common type of progenitor cell, the hemocytoblast.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000224", ontology="VHOG", source="DOI:10.1146/annurev.cellbio.22.010605.093317 Hartenstein V, Blood cells and blood cell development in the animal kingdom. Annual review of cell and developmental biology (2006) ", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0000179 @@ -156812,9 +159351,9 @@ relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: surrounded_by UBERON:0013118 ! sulcus of brain -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky +property_value: dc:contributor https://github.com/wdahdul property_value: seeAlso "https://github.com/obophenotype/uberon/issues/573" xsd:anyURI [Term] @@ -156834,7 +159373,7 @@ creation_date: 2009-04-10T08:15:44Z id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] -xref: FBbt:00007091 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007091 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000120 ! blood brain barrier intersection_of: UBERON:0000120 ! blood brain barrier intersection_of: composed_primarily_of CL:0000125 ! glial cell @@ -156924,7 +159463,7 @@ id: UBERON:0000207 name: compound eye corneal lens def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] synonym: "acellular lens" RELATED [] -xref: FBbt:00004199 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004199 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000304 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0005389 ! transparent eye structure @@ -157090,7 +159629,7 @@ synonym: "craniovertebral joint" EXACT [FMA:24939] synonym: "occipito atlantal joint" EXACT [] synonym: "occipito-atlantal joint" EXACT [] xref: FMA:24939 -xref: MESH:D001269 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001269 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32158 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto xref: SCTID:361831006 @@ -157223,7 +159762,8 @@ relationship: only_in_taxon NCBITaxon:32524 {source="Hymans"} ! Amniota relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounds UBERON:0000922 ! embryo property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI property_value: external_definition "A thin but tough extraembryonic membrane of reptiles, birds and mammals that lines the chorion and contains the fEtus and the amniotic fluid around it. [Biology_Online][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000721", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "amniotic" xsd:string property_value: homology_notes "Structures homologous to the four extraembryonic membranes of reptiles and birds appear in mammals: amnion, chorion, yolk sac, and allantois.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000721", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.187", source="http://bgee.unil.ch/"} @@ -157303,7 +159843,7 @@ xref: FMA:75000 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010962 ! extensor pre-muscle mass relationship: part_of UBERON:0000026 ! appendage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0000312 @@ -157514,7 +160054,7 @@ synonym: "fetus" NARROW [BTO:0000449] xref: BTO:0000449 xref: CALOHA:TS-0360 xref: EFO:0001323 -xref: FBbt:00005333 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005333 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63919 xref: GAID:552 xref: MESH:D005333 @@ -157897,8 +160437,8 @@ property_value: taxon_notes "In humans it is a tendon-like structure that has de id: UBERON:0000353 name: parenchyma def: "Functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues." [Wikipedia:Parenchyma] -xref: BTO:0000999 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} -xref: BTO:0001539 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0000999 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001539 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA:3015 xref: EHDAA:3905 xref: EHDAA:3999 @@ -158067,10 +160607,22 @@ relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: has_part UBERON:0004200 ! kidney pyramid relationship: part_of UBERON:0002113 ! kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: structure_notes "The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water" xsd:string @@ -158152,8 +160704,8 @@ xref: ZFA:0005271 is_a: UBERON:0014892 ! skeletal muscle organ, vertebrate relationship: develops_from UBERON:0010977 ! flexor pre-muscle mass relationship: part_of UBERON:0000026 ! appendage +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "A muscle that decreases the angle of a joint.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005271", ontology="TAO", source="ZFIN:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000368 @@ -158620,7 +161172,7 @@ xref: BTO:0001592 xref: EV:0100145 xref: FMA:76690 xref: galen:Meniscus -xref: MESH:D000072600 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000072600 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33096 xref: UMLS:C0224498 {source="ncithesaurus:Meniscus"} xref: Wikipedia:Meniscus_(anatomy) @@ -158714,9 +161266,9 @@ is_a: UBERON:0002360 ! meninx is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0007646 ! endomeninx relationship: immediate_transformation_of UBERON:0007646 ! endomeninx +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "check relationship to secondary meninx" xsd:string property_value: external_ontology_notes "in FMA/NIF this is a superclass of PM/AM - in BTO it is the mereological sum. We go with superclass here, as we are naming the class in the singular" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000392 @@ -159403,6 +161955,7 @@ id: UBERON:0000435 name: lateral tuberal nucleus def: "Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area." [BTO:0002481] comment: The lateral tuberal nucleus is specific to humans and higher primates, however, this term is sometimes used loosely. If using for rodents, please use tuberal nucleus (sensu Rodentia) instead. If refering to the nucleus lateralis tuberis of fish, please use nucleus lateralis tuberis system (sensu Teleostei) {xref="PMID:29976824", xref="PMID:29976812", xref="DOI:10.1016/0016-6480(71)90165-1", xref="PMID:1362279"} +subset: human_reference_atlas synonym: "lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "lateral tuberal nuclear complex" EXACT [BIRNLEX:1206] synonym: "lateral tuberal nuclei" EXACT [FMA:62336] @@ -159424,6 +161977,7 @@ xref: UMLS:C0086527 {source="BIRNLEX:1206"} is_a: UBERON:0006568 ! hypothalamic nucleus relationship: in_taxon NCBITaxon:9443 ! Primates relationship: part_of UBERON:0002430 ! lateral hypothalamic area +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0000437 @@ -159538,9 +162092,9 @@ xref: NCIT:C33040 xref: SCTID:64626006 xref: UMLS:C0229654 {source="ncithesaurus:Lymphoid_Follicle"} is_a: UBERON:0001744 {source="FMA"} ! lymphoid tissue +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: editor_note "introducing part_of to 'cortex of lymph node' as in issue 7 introduces equivalencies; the part_of has instead been added to 'lymph node follicle'" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan property_value: seeAlso "https://github.com/obophenotype/uberon/issues/6" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/7" xsd:anyURI @@ -159850,7 +162404,7 @@ xref: CALOHA:TS-2101 xref: CARO:0000004 xref: EHDAA2:0003004 xref: EMAPA:35178 -xref: FBbt:00007019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9669 xref: galen:BodySubstance xref: HAO:0000004 @@ -159884,7 +162438,7 @@ xref: AEO:0000005 xref: BILA:0000005 xref: CARO:0000005 xref: EHDAA2:0003005 -xref: FBbt:00007017 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5897 xref: HAO:0000005 xref: NCIT:C94478 @@ -159912,7 +162466,7 @@ xref: AEO:0000006 xref: BILA:0000006 xref: CARO:0000006 xref: EHDAA2:0003006 -xref: FBbt:00007016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 @@ -159937,7 +162491,7 @@ xref: AEO:0000007 xref: BILA:0000007 xref: CARO:0000007 xref: EHDAA2:0003007 -xref: FBbt:00007015 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67112 xref: HAO:0000007 xref: TAO:0001835 @@ -159974,11 +162528,11 @@ xref: EHDAA2:0003011 xref: EHDAA:392 xref: EMAPA:16103 xref: EV:0100000 -xref: FBbt:00004856 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004856 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 -xref: IDOMAL:0002460 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002460 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MA:0000003 xref: NCIT:C12919 xref: SCTID:278195005 @@ -160029,7 +162583,7 @@ xref: EHDAA2:0003191 xref: EHDAA:1 xref: EMAPA:25765 xref: EV:0100016 -xref: FBbt:00000001 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000001 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:256135 xref: galen:Organism xref: HAO:0000012 @@ -160067,8 +162621,8 @@ consider: FBbt:00007012 consider: FMA:86454 consider: GO:0044464 consider: HAO:0000014 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-1337158144 consider: NCIT:C34070 -consider: NIF_Subcellular:sao-1337158144 consider: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA consider: TGMA:0001834 consider: UMLS:C1178969 {source="ncithesaurus:Cell_Part"} @@ -160139,7 +162693,7 @@ xref: EHDAA2:0002007 xref: EHDAA:8146 xref: EMAPA:17972 xref: EV:0100102 -xref: FBbt:00004928 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004928 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7210 xref: GAID:396 xref: galen:Testis @@ -160198,7 +162752,7 @@ xref: EHDAA2:0000506 xref: EHDAA:8116 xref: EMAPA:17959 xref: EV:0100110 -xref: FBbt:00004864 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004864 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45663 xref: GAID:364 xref: HAO:0000324 @@ -160243,7 +162797,7 @@ xref: CARO:0000032 xref: EFO:0000808 xref: EHDAA2:0003032 xref: EMAPA:36031 -xref: FBbt:00007009 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7153 xref: galen:BodyPart xref: HAO:0000032 @@ -160285,7 +162839,7 @@ xref: AEO:0000040 xref: BILA:0000040 xref: CARO:0000040 xref: EHDAA2:0003040 -xref: FBbt:00007013 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007013 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 @@ -160304,7 +162858,7 @@ name: anatomical cluster def: "Anatomical group whose component anatomical structures lie in close proximity to each other." [FBbt:00007277] subset: common_anatomy subset: upper_level -xref: FBbt:00007277 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007277 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: VHOG:0001737 is_a: UBERON:0034923 ! disconnected anatomical group relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae @@ -160329,7 +162883,7 @@ xref: CALOHA:TS-2119 xref: CARO:0000042 xref: EHDAA2:0003042 xref: EHDAA:46 -xref: FBbt:00005835 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005835 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:85537 xref: HAO:0000042 xref: NCIT:C34055 @@ -160365,7 +162919,7 @@ xref: CALOHA:TS-2090 xref: CARO:0000043 xref: EHDAA2:0003043 xref: EMAPA:35868 -xref: FBbt:00007003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9637 xref: galen:Tissue xref: HAO:0000043 @@ -160399,7 +162953,7 @@ xref: BILA:0000054 xref: CARO:0000054 xref: EHDAA2:0003054 xref: HAO:0000054 -xref: IDOMAL:0002459 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0002459 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001512 xref: TGMA:0001846 xref: VHOG:0001724 @@ -160424,7 +162978,7 @@ xref: AEO:0000055 xref: BILA:0000055 xref: CARO:0000055 xref: EHDAA2:0003055 -xref: FBbt:00007010 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000055 xref: TAO:0001488 xref: TGMA:0001847 @@ -160494,7 +163048,7 @@ xref: CALOHA:TS-0288 xref: CARO:0000066 xref: EHDAA2:0003066 xref: EMAPA:32738 -xref: FBbt:00007005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 @@ -160563,7 +163117,7 @@ xref: AEO:0000068 xref: BILA:0000068 xref: CARO:0000068 xref: EHDAA2_RETIRED:0003068 -xref: FBbt:00007027 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007027 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45567 xref: HAO:0000068 xref: NCIT:C33552 @@ -160735,7 +163289,7 @@ synonym: "valva ileocaecalis" RELATED OMO:0003011 [Wikipedia:Ileocecal_valve] synonym: "valva ileocaecalis (valva ilealis)" EXACT [FMA:15973] xref: FMA:15973 xref: galen:IleocecalValve -xref: MESH:D007080 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D007080 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13066 xref: SCTID:362153007 xref: UMLS:C0020880 {source="ncithesaurus:Ileocecal_Valve"} @@ -160746,8 +163300,13 @@ is_a: UBERON:0011185 ! gastrointestinal sphincter relationship: part_of UBERON:0001073 {source="FMA"} ! ileocecal junction relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fc/Gray1075.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0000642 @@ -160906,7 +163465,7 @@ subset: uberon_slim subset: upper_level synonym: "segment" EXACT [FBbt:00000003] synonym: "serial element" EXACT [] -xref: FBbt:00000003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000929 xref: MAT:0000271 xref: MIAA:0000271 @@ -161014,7 +163573,7 @@ subset: uberon_slim subset: vertebrate_core synonym: "chorion" RELATED [] synonym: "chorion (egg)" EXACT [] -xref: FBbt:00000038 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000038 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TAO:0000329 xref: TGMA:0000681 xref: Wikipedia:Chorion_(egg) @@ -161059,11 +163618,11 @@ xref: EHDAA2:0000002 xref: EHDAA2_RETIRED:0003236 xref: EHDAA:38 xref: EMAPA:16039 -xref: FBbt:00000052 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000052 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69068 xref: GAID:963 xref: http://neurolex.org/wiki/Category\:Embryonic_organism -xref: IDOMAL:0000646 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: IDOMAL:0000646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MAT:0000226 xref: MESH:D004622 xref: MIAA:0000019 @@ -161102,7 +163661,7 @@ xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: EMAPA:36033 -xref: FBbt:00000110 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000110 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69069 xref: GAID:1303 xref: MESH:D005855 @@ -161138,7 +163697,7 @@ xref: EFO:0000414 xref: EHDAA2:0000428 xref: EMAPA:16069 xref: EV:0100003 -xref: FBbt:00000111 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000111 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 @@ -161179,7 +163738,7 @@ xref: EFO:0002545 xref: EHDAA2:0000436 xref: EMAPA:16062 xref: EV:0100005 -xref: FBbt:00000125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69071 xref: GAID:1305 xref: MAT:0000175 @@ -161225,7 +163784,7 @@ xref: EHDAA:160 xref: EHDAA:183 xref: EMAPA:16083 xref: EV:0100006 -xref: FBbt:00000126 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000126 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69072 xref: GAID:522 xref: MAT:0000174 @@ -161260,7 +163819,7 @@ subset: efo_slim subset: uberon_slim synonym: "MesEc" RELATED [] xref: EFO:0003336 -xref: FBbt:00000136 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000136 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000243 xref: MIAA:0000243 is_a: UBERON:0000923 ! germ layer @@ -161319,7 +163878,7 @@ synonym: "stomodeal-hypophyseal primordium" BROAD [XAO:0000269] xref: BTO:0004224 xref: EHDAA2:0001929 xref: EMAPA:16263 -xref: FBbt:00000439 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000439 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:295846 xref: NCIT:C34306 xref: TAO:0001290 @@ -161352,7 +163911,7 @@ synonym: "proctodaeum" EXACT [] xref: AAO:0011087 xref: EHDAA2:0000121 xref: EMAPA:25038 -xref: FBbt:00000123 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000123 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NCIT:C34278 xref: TAO:0000066 xref: UMLS:C0231054 {source="ncithesaurus:Proctodeum"} @@ -161366,14 +163925,14 @@ relationship: has_potential_to_develop_into UBERON:0001353 ! anal region relationship: located_in UBERON:0012469 {source="EHDAA2"} ! external anal region relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0007026 ! presumptive gut +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/mmc46 property_value: editor_note "removed WBbt:0006795 'proctodeum' - junction between the alimentary and genital tracts in the male." xsd:string property_value: external_definition "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000066", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011087", ontology="AAO", source="ZFA:0000066"} property_value: has_relational_adjective "proctodeal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 property_value: seeAlso "https://github.com/obophenotype/uberon/issues/685" xsd:anyURI [Term] @@ -161431,7 +163990,7 @@ subset: uberon_slim synonym: "ventral cord" EXACT [GO:0007419] xref: BTO:0002328 xref: EFO:0000896 -xref: FBbt:00005097 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005097 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000339 xref: MIAA:0000339 xref: NLX:146329 @@ -161492,8 +164051,14 @@ is_a: UBERON:0005341 {source="MP"} ! ventral commissure disjoint_from: UBERON:0000936 {source="lexical"} ! posterior commissure relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b4/Gray744.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: homology_notes "In all vertebrates the thin structure that connects the two halves of the telencephalon shows a ridge-like thickening at the basal side known as the anterior commissure.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001558", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20432.x", source="http://bgee.unil.ch/"} [Term] @@ -161553,9 +164118,9 @@ comment: Though inaginal discs are sometimes described as “epithelial sacs”, subset: uberon_slim synonym: "imaginal disk" RELATED [] xref: BTO:0004658 -xref: FBbt:00001761 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001761 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000064 -xref: MESH:D060227 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060227 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000064 xref: Wikipedia:Imaginal_disc is_a: UBERON:0000481 {source="FBbt text definition"} ! multi-tissue structure @@ -161631,6 +164196,7 @@ property_value: homology_notes "(...) an essentially similar sequence of events id: UBERON:0000942 name: frontal nerve (branch of ophthalmic) def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve] +subset: human_reference_atlas subset: uberon_slim synonym: "frontal nerve" EXACT [FMA:52638] synonym: "nervus frontalis" RELATED OMO:0003011 [Wikipedia:Frontal_nerve] @@ -161643,6 +164209,7 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0000348 {source="FMA"} ! ophthalmic nerve relationship: part_of UBERON:0000348 ! ophthalmic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/45/Gray787.png" xsd:anyURI [Term] @@ -161798,8 +164365,14 @@ relationship: located_in UBERON:0002224 {source="MA-modified"} ! thoracic cavity relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0010191 {source="EHDAA2"} ! aortic system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/91/Aorta_scheme.jpg" xsd:anyURI property_value: editor_note "This class is currently a mixed bag, encompassing (1) the entirety of the mammalian aorta together with (2) the developmental and phylogenetic homologs of its segments: the ventral aorta and dorsal aortae." xsd:string {source="WP"} property_value: external_definition "The main artery of the circulatory system which carries oxygenated blood from the heart to all the arteries of the body except those of the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010213", ontology="AAO", source="AAO:BJB"} @@ -161863,9 +164436,14 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO"} -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "Blood pumping organ composed of four chambers: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000114", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the circulatory system responsible for pumping blood; composed of three chambers--two atria and one ventricle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010210", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "cardiac" xsd:string @@ -161888,7 +164466,7 @@ xref: EFO:0002969 xref: EHDAA2:0002224 xref: EMAPA:35306 xref: EV:0100128 -xref: FBbt:00005068 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005068 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9668 xref: GAID:439 xref: MA:0000012 @@ -162029,7 +164607,7 @@ xref: EHDAA:2641 xref: EHDAA:6485 xref: EMAPA:16894 xref: EV:0100164 -xref: FBbt:00005095 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005095 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:50801 xref: GAID:571 xref: galen:Brain @@ -162063,14 +164641,22 @@ relationship: immediate_transformation_of UBERON:0006238 {source="Bgee:AN"} ! fu relationship: in_anterior_side_of UBERON:0000468 ! multicellular organism relationship: part_of UBERON:0001017 {source="FMA"} ! central nervous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: dc:contributor https://github.com/cmungall +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: editor_note "requires review for applicability to invertebrate structures, e.g. synganglion" xsd:string property_value: external_definition "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000008", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the central nervous system situated within the cranium and composed of both nerve cell bodies and nerve fibers.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010478", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The part of the central nervous system contained within the cranium, comprising the forebrain, midbrain, hindbrain, and metencephalon. It is derived from the anterior part of the embryonic neural tube (or the encephalon). Does not include retina. (CUMBO)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000157", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0000956 @@ -162216,6 +164802,9 @@ relationship: extends_fibers_into UBERON:0001908 ! optic tract relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001894 ! diencephalon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/1543%2CVisalius%27OpticChiasma.jpg" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "The point at which fibers of the optic nerves cross.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010622", ontology="AAO", source="AAO:DSM"} property_value: homology_notes "The chiasm has been studied in great detail in some animals, while in others relatively little or nothing is known. Although there are some gross architectural features that are conserved within some animals, such as birds and fish, the general picture is one of diversity. This review will attempt to consider the key features of such diversity of chiasmatic organisation in vertebrates and the mechanisms that sculpt them from the limited literature that is available. However, as so much research has been undertaken on the structure and development of the chiasm in laboratory animals, any review must consider the information that has been gleaned from them and hope that future studies will determine whether the features revealed in these animals, and the underlying mechanisms that generate them, have a common vertebrate plan.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000190", ontology="VHOG", source="DOI:10.1016/j.preteyeres.2005.04.005 Jeffery G, Erskine L, Variations in the architecture and development of the vertebrate optic chiasm. Progress in retinal and eye research (2005)", source="http://bgee.unil.ch/"} @@ -162267,6 +164856,7 @@ id: UBERON:0000962 name: nerve of cervical vertebra def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerves] comment: Innervates: sternohyoid muscle, sternothyroid muscle, omohyoid muscle[WP] +subset: human_reference_atlas subset: uberon_slim synonym: "cervical nerve" EXACT [FMA:5859] synonym: "cervical nerve tree" EXACT [] @@ -162284,12 +164874,13 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0002726 ! cervical spinal cord relationship: extends_fibers_into UBERON:0002726 ! cervical spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray795.png" xsd:anyURI [Term] id: UBERON:0000963 name: head sensillum -xref: FBbt:00004114 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004114 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum @@ -162502,7 +165093,7 @@ xref: BTO:0000439 xref: CALOHA:TS-0309 xref: EFO:0000827 xref: EV:0100336 -xref: FBbt:00005162 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:69 xref: MAT:0000140 xref: MESH:D005123 @@ -162527,7 +165118,7 @@ subset: uberon_slim synonym: "omatidia" RELATED OMO:0003004 [] synonym: "omatidium" EXACT [] xref: BTO:0001922 -xref: FBbt:00004510 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004510 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000666 xref: MAT:0000143 xref: MIAA:0000143 @@ -162547,7 +165138,7 @@ synonym: "feeler" RELATED [BTO:0000074] xref: AEO:0000198 xref: BTO:0000074 xref: EFO:0000874 -xref: FBbt:00004511 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004511 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000101 xref: MAT:0000086 xref: MIAA:0000086 @@ -162644,14 +165235,14 @@ relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0003252 {source="FMA"} ! thoracic rib cage relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of postzonal element (AAO:0000938)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000765", ontology="AAO"} +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/12/Illu_thoracic_cage.jpg" xsd:anyURI property_value: development_notes "While its developmental origins are similar to the ribs (from the myospetum and septum of the trunk region), it is often associated with the pectoral skeleton, due to both function and physical connections (i.e. the coracoid of archosaurs). It may be a single element or a series of smaller structure (sternebrae). Based on Kardong 2012. [PHENOSCAPE:ad]." xsd:string {source="WP"} property_value: editor_note "in EMAPA and EHDAA2 this is part of the skeleton of pectoral girdle; the classic def of pectoral girdle (see WP) excludes the rib cage and sternum" xsd:string property_value: external_definition "Single element that constitutes the postzonal area of the pectoral girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000765", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "sternal" xsd:string property_value: homology_notes "Fishes lack a sternum. (...) A sternum is absent in the first fossil tetrapods, but it is present in modern amphibians. (...) Thus, a sternum occurs in some modern amphibians, birds, mammals and archosaurs. However, its absence in the common ancestors to these groups means that it has arisen independently several times within the field of the midventral connective tissue.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000856", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.294", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "in birds, either ratite (no keel or carina) or carinate (keel and carina present)" xsd:string property_value: taxon_notes "It probably first evolved in early tetrapods as an extension of the pectoral girdle; it is not found in fish. In amphibians and reptiles it is typically a shield-shaped structure, often composed entirely of cartilage. It is absent in both turtles and snakes. In birds it is a relatively large bone and typically bears an enormous projecting keel to which the flight muscles are attached. Only in mammals does the sternum take on the elongated, segmented form seen in humans. In some mammals, such as opossums, the individual segments never fuse and remain separated by cartilagenous plates throughout life" xsd:string @@ -162697,12 +165288,12 @@ relationship: part_of UBERON:0001440 {source="FMA"} ! forelimb skeleton relationship: part_of UBERON:0003822 {source="FMA"} ! forelimb stylopod relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0007831 ! pectoral girdle skeleton +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/67/Illu_upper_extremity.jpg" xsd:anyURI property_value: external_definition "Paired, elongate, cylindrical bones of endochondral origin that extend from the pectoral girdle to the elbows.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000679", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "humeral" xsd:string property_value: homology_notes "Most anatomists now agree that the three proximal bones of the tetrapod limbs are homologous to the two or three proximal elements of the paired fin skeleton of other sarcopterygians, that is the humerus-femur, radius-tibia, and ulna-fibula.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001158", ontology="VHOG", source="ISBN:978-0198540472 Janvier P, Early vertebrates (1996) p.268", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0000977 @@ -162979,7 +165570,7 @@ synonym: "thoracic wing" RELATED [] synonym: "thorax wing" RELATED [OBOL:automatic] synonym: "wing" BROAD SENSU [FBbt:00004729] synonym: "wing of thorax" RELATED [OBOL:automatic] -xref: FBbt:00004729 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0001089 xref: TGMA:0000196 is_a: UBERON:0000023 ! wing @@ -163025,7 +165616,7 @@ subset: efo_slim subset: uberon_slim synonym: "balancer organ" RELATED [] xref: EFO:0000886 -xref: FBbt:00004783 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004783 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000203 xref: MIAA:0000203 xref: Wikipedia:Haltere @@ -163151,13 +165742,13 @@ xref: EHDAA2:0001603 xref: EHDAA:5923 xref: EMAPA:17381 xref: EV:0100100 -xref: FBbt:00004857 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004857 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7160 xref: GAID:363 xref: HAO:0000374 xref: HAO:0000895 xref: MA:0000326 -xref: MESH:D005835 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005835 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000305 xref: NCIT:C12841 xref: SCTID:278875001 @@ -163285,7 +165876,7 @@ xref: EHDAA2:0001360 xref: EHDAA:8124 xref: EMAPA:17962 xref: EV:0100111 -xref: FBbt:00004865 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004865 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7209 xref: GAID:367 xref: MA:0000384 @@ -163373,7 +165964,7 @@ synonym: "spermatheca" RELATED OMO:0003004 [] synonym: "spermathecae" RELATED OMO:0003004 [] xref: BTO:0001273 xref: EFO:0000977 -xref: FBbt:00004921 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004921 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000945 xref: MAT:0000168 xref: MIAA:0000168 @@ -163420,7 +166011,9 @@ relationship: only_in_taxon NCBITaxon:32525 ! Theria relationship: part_of UBERON:0004175 ! internal genitalia relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6a/Female_reproductive_system_lateral_nolabel.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI property_value: development_notes "Two uteruses usually form initially in a female fetus, and in placental mammals they may partially or completely fuse into a single uterus depending on the species. In many species with two uteruses, only one is functional. Humans and other higher primates such as chimpanzees, along with horses, usually have a single completely fused uterus, although in some individuals the uteruses may not have completely fused [Wikipedia:Uterus]" xsd:string property_value: external_definition "The hollow muscular organ in female mammals in which the blastocyst normally becomes embedded and in which the developing embryo and fetus is nourished. Its cavity opens into the vagina below and into a uterine tube on either side. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001137", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/uterus"} @@ -163551,7 +166144,9 @@ relationship: develops_from UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000473 ! testis relationship: produces UBERON:0010143 ! seminal vesicle fluid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Male_anatomy_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: external_definition "Either of a pair of pouchlike glands situated on each side of the male urinary bladder that secrete seminal fluid and nourish and promote the movement of spermatozoa through the urethra. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001379", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/prominence"} property_value: function_notes "The seminal vesicles secrete a significant proportion of the fluid that ultimately becomes semen. Lipofuscin granules from dead epithelial cells give the secretion its yellowish color. About 50-70% of the seminal fluid in humans originates from the seminal vesicles, but is not expelled in the first ejaculate fractions which are dominated by spermatozoa and zinc-rich prostatic fluid." xsd:string property_value: homology_notes "(In mammalian testis) Along the way (the sperm travel), three accessory sex glands, the seminal vesicle, prostate, and bulbourethral (Cowper's) gland, respectively, add their secretions as sperm move from the testes to the urethra.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001379", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.556", source="http://bgee.unil.ch/"} @@ -163591,7 +166186,9 @@ relationship: channels_into UBERON:0000057 ! urethra relationship: in_lateral_side_of UBERON:0000079 ! male reproductive system relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000079 ! male reproductive system -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.0/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/35/Male_anatomy.png" xsd:anyURI [Term] @@ -163649,7 +166246,7 @@ synonym: "cuticle" NARROW [FBbt:00004970] synonym: "exoskeleton" BROAD [] synonym: "insect cuticle" RELATED [] xref: EFO:0000944 -xref: FBbt:00004970 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004970 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000240 xref: MAT:0000150 xref: MIAA:0000150 @@ -163789,11 +166386,14 @@ relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000541", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "There is no doubt that the primitive pattern of vertebrate air-breathing is the buccal pulse pump found in actinopterygian fishes.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000202", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.599 and Figure 18-23", source="http://bgee.unil.ch/"} @@ -163850,7 +166450,7 @@ xref: BILA:0000082 xref: BTO:0000058 xref: CALOHA:TS-1293 xref: EFO:0000793 -xref: FBbt:00005055 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7152 xref: GAID:278 xref: galen:DigestiveSystem @@ -163916,7 +166516,7 @@ xref: EHDAA2:0001601 xref: EHDAA:5901 xref: EMAPA:17366 xref: EV:0100095 -xref: FBbt:00005056 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005056 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7159 xref: GAID:391 xref: galen:UrinaryTract @@ -163957,7 +166557,7 @@ subset: uberon_slim synonym: "systema cardiovasculare" RELATED OMO:0003011 [Wikipedia:Circulatory_system] xref: AAO:0000959 xref: CALOHA:TS-2103 -xref: MESH:D002319 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D002319 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: VHOG:0001248 xref: Wikipedia:Circulatory_system is_a: UBERON:0000467 ! anatomical system @@ -164013,7 +166613,7 @@ def: "Blood analogue used by all arthropods and most mollusks that have an open subset: uberon_slim synonym: "haemolymph" RELATED [] xref: BTO:0000572 -xref: FBbt:00005061 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005061 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1220 xref: MAT:0000054 xref: MESH:D006458 @@ -164161,7 +166761,7 @@ xref: EHDAA2:0001246 xref: EHDAA:826 xref: EMAPA:16469 xref: EV:0100162 -xref: FBbt:00005093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7157 xref: GAID:466 xref: MA:0000016 @@ -164233,7 +166833,7 @@ xref: EHDAA:828 xref: EMAPA:16470 xref: EMAPA:16754 xref: EV:0100163 -xref: FBbt:00005094 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005094 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:55675 xref: GAID:570 xref: MA:0000167 @@ -164277,7 +166877,7 @@ synonym: "tract" RELATED [] synonym: "tract of neuraxis" EXACT [FMA:83847] xref: BIRNLEX:1649 xref: EV:0100304 -xref: FBbt:00005100 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005100 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:83847 xref: NLX:147822 is_a: UBERON:0000122 ! neuron projection bundle @@ -164328,10 +166928,10 @@ xref: Wikipedia:Commissure is_a: UBERON:0001018 ! axon tract relationship: intersects_midsagittal_plane_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0002316 {gci_relation="part_of", gci_filler="NCBITaxon:7742", notes="myelin not present in all taxa that have a commissure"} ! white matter +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "White matter fiber bundle that crosses the midline of the brain or spinal cord, that connects similar structures on both sides. (CUMBO; Heimer, L. The Human Brain, 2nd ed., 1995, pg 6)" xsd:string {source="http://neurolex.org/wiki/Cumbo_terms"} property_value: has_relational_adjective "commissural" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0001021 @@ -164359,7 +166959,7 @@ xref: EHDAA:4657 xref: EMAPA:32808 xref: EMAPA:32815 xref: EV:0100371 -xref: FBbt:00005105 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005105 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:65132 xref: FMA:65239 xref: GAID:747 @@ -164396,7 +166996,7 @@ is_obsolete: true consider: FBbt:00005107 consider: FMA:67301 consider: GO:0043025 -consider: NIF_Subcellular:sao1044911821 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1044911821 [Term] id: UBERON:0001023 @@ -164411,9 +167011,9 @@ consider: FBbt:00005110 consider: FMA:67314 consider: GAID:749 consider: GO:0030425 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1211023249 consider: MESH:A08.663.256 consider: NCIT:C32447 -consider: NIF_Subcellular:sao1211023249 consider: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA consider: TGMA:0001373 consider: UMLS:C0011305 @@ -164430,8 +167030,8 @@ consider: FBbt:00005113 consider: FMA:61814 consider: GAID:751 consider: GO:0043005 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao-867568886 consider: MESH:A08.663.256.500 -consider: NIF_Subcellular:sao-867568886 [Term] id: UBERON:0001025 @@ -164447,9 +167047,9 @@ consider: FBbt:00005114 consider: FMA:67408 consider: GAID:766 consider: GO:0045202 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao914572699 consider: MESH:A08.850 consider: NCIT:C13281 -consider: NIF_Subcellular:sao914572699 consider: SCTID:362298009 consider: UMLS:C0039062 @@ -164473,7 +167073,7 @@ synonym: "afferent nerve" RELATED [] synonym: "nervus sensorius" EXACT OMO:0003011 [Wikipedia:Sensory_nerve] xref: AEO:0000201 xref: EHDAA2:0003200 -xref: FBbt:00005136 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005136 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:5868 xref: Wikipedia:Sensory_nerve is_a: UBERON:0001021 ! nerve @@ -164513,8 +167113,8 @@ replaced_by: GO:0031594 consider: FBbt:00005142 consider: FMA:61803 consider: GAID:809 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1124888485 consider: MESH:D009469 -consider: NIF_Subcellular:sao1124888485 [Term] id: UBERON:0001030 @@ -164524,7 +167124,7 @@ is_obsolete: true consider: FBbt:00005143 consider: FMA:67107 consider: GO:0048788 -consider: NIF_Subcellular:sao1884931180 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1884931180 [Term] id: UBERON:0001031 @@ -164572,7 +167172,7 @@ xref: BILA:0000099 xref: EFO:0000805 xref: EHDAA2:0003094 xref: EMAPA:16192 -xref: FBbt:00007692 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007692 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:75259 xref: MA:0002442 xref: MAT:0000031 @@ -164725,7 +167325,7 @@ subset: uberon_slim synonym: "ch" RELATED [] synonym: "scolopophorous organ" RELATED [] xref: EFO:0000940 -xref: FBbt:00005215 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005215 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000209 xref: MIAA:0000209 xref: Wikipedia:Chordotonal_organ @@ -164782,7 +167382,7 @@ xref: BTO:0000507 xref: EHDAA2:0000557 xref: EHDAA:520 xref: EMAPA:16548 -xref: FBbt:00005379 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005379 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45616 xref: MA:0001526 xref: NCIT:C34180 @@ -164918,7 +167518,7 @@ xref: EHDAA2:0001775 xref: EHDAA:7987 xref: EMAPA:17751 xref: EV:0100059 -xref: FBbt:00005382 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005382 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:9597 xref: GAID:937 xref: galen:SalivaryGland @@ -164961,7 +167561,7 @@ xref: EFO:0001950 xref: EHDAA2:0001185 xref: EHDAA:983 xref: EMAPA:16255 -xref: FBbt:00005383 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005383 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45617 xref: MA:0001564 xref: NCIT:C34210 @@ -164994,7 +167594,7 @@ xref: BTO:0000510 xref: EHDAA2:0000779 xref: EHDAA:975 xref: EMAPA:16715 -xref: FBbt:00005384 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005384 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45618 xref: MA:0001527 xref: NCIT:C34188 @@ -165020,7 +167620,7 @@ name: neural glomerulus def: "A large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets." [DOI:10.1016/B978-0-12-374245-2.00007-3, ILX:0728797] subset: uberon_slim synonym: "glomerulus" BROAD [FBbt:00005386] -xref: FBbt:00005386 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005386 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: ILX:0728797 is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:0002606 ! neuropil @@ -165041,7 +167641,7 @@ xref: AEO:0000171 xref: BTO:0001886 xref: EFO:0001652 xref: EHDAA2:0003171 -xref: FBbt:00005495 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005495 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:86589 xref: MAT:0000482 xref: NCIT:C34275 @@ -165072,7 +167672,7 @@ xref: EMAPA:16164 xref: EMAPA:16757 xref: FMA:293882 xref: MAT:0000069 -xref: MESH:D054259 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000069 xref: NCIT:C34226 xref: neuronames:1365 @@ -165176,8 +167776,14 @@ relationship: part_of UBERON:0006866 ! terminal part of digestive tract relationship: part_of UBERON:0012361 {source="EHDAA2"} ! internal anal region relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/75/Anorectum.gif" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: external_definition "The terminal portion of the large intestine between the ileo-pelvic colon and the anus. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001751", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "rectal" xsd:string property_value: taxon_notes "In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat. -- http://www.earthlife.net/fish/digestion.html" xsd:string @@ -165192,7 +167798,7 @@ subset: organ_slim synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 xref: EFO:0000864 -xref: FBbt:00005757 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005757 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000212 xref: MIAA:0000212 is_a: UBERON:0010133 ! neuroendocrine gland @@ -165211,7 +167817,7 @@ synonym: "Malpighian tube" RELATED [UBERON:cjm] synonym: "tuba Malpighii" RELATED [BTO:0000810] xref: BTO:0000810 xref: EFO:0000243 -xref: FBbt:00005786 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005786 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1228 xref: MAT:0000123 xref: MESH:D008317 @@ -165240,7 +167846,7 @@ subset: efo_slim synonym: "corpora cardiaca" RELATED OMO:0003004 [BTO:0000432] xref: BTO:0000432 xref: EFO:0000380 -xref: FBbt:00005799 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005799 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000211 xref: MIAA:0000211 is_a: UBERON:0001053 ! arthropod neurohemal organ @@ -165257,7 +167863,7 @@ subset: uberon_slim synonym: "corpora allata" RELATED OMO:0003004 [BTO:0000291] xref: BTO:0000291 xref: EFO:0000379 -xref: FBbt:00005800 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005800 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000210 xref: MESH:D003335 xref: MIAA:0000210 @@ -165277,7 +167883,7 @@ synonym: "corpora pedunculata" RELATED [FBbt:00005801, PMID:21062451] synonym: "mushroom bodies" EXACT OMO:0003004 [] xref: BTO:0002675 xref: EFO:0000925 -xref: FBbt:00005801 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005801 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1231 xref: MAT:0000336 xref: MESH:D024521 @@ -165301,7 +167907,7 @@ comment: will be ceded to arthropod anatomy ontology subset: efo_slim subset: uberon_slim xref: EFO:0000926 -xref: FBbt:00005802 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005802 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000337 xref: MIAA:0000337 is_a: UBERON:0011215 ! central nervous system cell part cluster @@ -165321,7 +167927,7 @@ xref: BILA:0000000 xref: BIRNLEX:6 xref: CARO:0000000 xref: EHDAA2:0002229 -xref: FBbt:10000000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:10000000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:62955 xref: HAO:0000000 xref: MA:0000001 @@ -165562,8 +168168,14 @@ relationship: develops_from UBERON:0003924 {source="EHDAA2-inferred", source="WP relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000448", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] @@ -165627,16 +168239,15 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0001072 -name: posterior vena cava +name: inferior vena cava def: "A vein that carries deoxygenated blood from the lower half of the body into the right atrium of the heart." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Inferior_vena_cava] subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "caudal vena cava" RELATED [VHOG:0001194] synonym: "inferior caval vein" EXACT [http://orcid.org/0000-0002-6601-2165] -synonym: "inferior vena cava" EXACT [Wikipedia:Venae_cavae] synonym: "postcava" RELATED [] -synonym: "posterior vena cava" EXACT [Wikipedia:Venae_cavae] +synonym: "posterior vena cava" EXACT [PMID:21154280] synonym: "vena cava inferior" RELATED OMO:0003011 [BTO:0002682, Wikipedia:Inferior_vena_cava] xref: AAO:0011083 xref: BTO:0002682 @@ -166598,14 +169209,14 @@ relationship: overlaps UBERON:0001469 {gci_relation="part_of", gci_filler="NCBIT relationship: part_of UBERON:0007831 {source="FMA", source="VSAO"} ! pectoral girdle skeleton relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000761", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/59/Pectoral_girdles-en.svg" xsd:anyURI property_value: development_notes "In most birds and mammals the clavicles are the only dermal elements in the trunk, and is the only membrane bone associated with the pectoral girdle in these taxa. However, there can be secondary cartilage, or subsequent endochondral ossification, or fusion with endochondral elements. In rodents, the lateral ends of the clavicle are endochondral but the main portion is dermal." xsd:string {source="ISBN:978-0-12-319060-4"} property_value: external_definition "Slender, paired bones of intramembranous origin that invest the anterior margins of the procoracoids.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000761", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "FMA and MA differ in whether they consider this part of the shoulder" xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "clavicular" xsd:string property_value: homology_notes "In early tetrapods, the connecting skull bone, the posttemporal, and adjoining shoulder bones, supracleithrum and postcleithrum (=anocleithrum), are absent, leaving a dermal shoulder girdle composed of the remaining ventral elements: the paired cleithrum and clavicle, and an unpaired midventral interclavicle that joins both halves of the girdle across the midline. (...) Several dermal elements of the shoulder persist in early synapsids. The clavicle and interclavicle are present in therapsids and monotremes, but in marsupials and placentals, the interclavicle is absent, the clavicle often is reduced in size, and the scapula becomes the predominant shoulder element.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000849", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.330-333 and Figure 9.18", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "The clavicle first appears as part of the skeleton in primitive bony fish, where it is associated with the pectoral fin; they also have a bone called the cleithrum. In such fish, the paired clavicles run behind and below the gills on each side, and are joined by a solid symphysis on the fish's underside. They are, however, absent in cartilagenous fish and in the vast majority of living bony fish, including all of the teleosts[ISBN 0-03-910284-X]." xsd:string [Term] @@ -166873,8 +169484,12 @@ xref: Wikipedia:Right_lobe_of_liver xref: ZFA:0005173 is_a: UBERON:0001113 ! lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_definition "Portion of the liver which develops on the fish's right side adjacent to the gall bladder.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005173", ontology="TAO", source="ZFIN:curator"} [Term] @@ -166902,8 +169517,12 @@ xref: Wikipedia:Left_lobe_of_liver xref: ZFA:0005172 is_a: UBERON:0001113 ! lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_definition "Portion of the liver which develops on the fish's left side.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005172", ontology="TAO", source="ZFIN:curator"} [Term] @@ -166926,8 +169545,12 @@ xref: VHOG:0000509 xref: Wikipedia:Quadrate_lobe_of_liver is_a: UBERON:0001114 ! right lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_definition "The portion of the right lobe of the liver between the gall bladder, the porta hepatis, the round ligament and the lower margin of the organ. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000509", ontology="VHOG", source="http://bgee.unil.ch/"} [Term] @@ -166963,8 +169586,12 @@ xref: Wikipedia:Caudate_lobe_of_liver is_a: UBERON:0001114 {source="MA"} ! right lobe of liver relationship: part_of UBERON:0001115 {source="FMA"} ! left lobe of liver property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: editor_note "Check left vs right in mouse and human" xsd:string property_value: external_definition "The portion of the right lobe of the liver between the fissure of the ligamentum venosum and the bare area of the liver. It ends into the superior recess of the lesser peritoneal sac. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000508", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The caudate lobe is the only real and constant hepatic lobe of mammals (...) .[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000508", ontology="VHOG", source="PMID:1610084 Van Minh T, Galizia G, Lieto E, Anatomy of the caudate lobe of the liver. New aspects and surgical applications. (Article in French) Annales de chirurgie (1992)", source="http://bgee.unil.ch/"} @@ -167481,15 +170108,15 @@ intersection_of: composed_primarily_of CL:0008002 ! skeletal muscle fiber relationship: composed_primarily_of CL:0008002 ! skeletal muscle fiber relationship: develops_from UBERON:0003082 ! myotome relationship: part_of UBERON:0014892 ! skeletal muscle organ, vertebrate +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/RDruzinsky property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Skeletal_muscle.jpg" xsd:anyURI property_value: editor_note "TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Todo - group FBbt:00005073 - somatic muscle." xsd:string property_value: external_definition "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005277", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]" xsd:string {external_class="FMA:14069", ontology="FMA"} property_value: homology_notes "This result implies the following views in terms of evolutionary differentiation: (1) Arthropod striated muscle and vertebrate skeletal and cardiac muscles share a common ancestor. In other words, they did not evolve independently (...) (5) The divergence of vertebrate skeletal and cardiac muscles/vertebrate smooth muscle and nonmuscle is at least before that of vertebrates/arthropods. In other words, emergence of skeletal and cardiac musle type tissues preceded the vertebrate/arthropod divergence (ca. 700 MYA).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000319", ontology="VHOG", source="PMID:10368962 Oota S, Saitou N, Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees. Mol Biol Evol (1999)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky [Term] id: UBERON:0001135 @@ -167629,6 +170256,10 @@ relationship: drains UBERON:0002108 ! small intestine relationship: part_of UBERON:0005806 ! portal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001139 @@ -167649,11 +170280,16 @@ xref: Wikipedia:Common_iliac_vein is_a: UBERON:0005610 {source="MA"} ! iliac vein is_a: UBERON:0015212 ! lateral structure relationship: drains UBERON:0010708 ! pectoral complex -relationship: in_lateral_side_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava -relationship: part_of UBERON:0001072 ! posterior vena cava -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +relationship: in_lateral_side_of UBERON:0001072 {source="FMA-abduced-lr"} ! inferior vena cava +relationship: part_of UBERON:0001072 ! inferior vena cava +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif" xsd:anyURI property_value: taxon_notes "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries." xsd:string {source="Wikipedia:Common_iliac_vein"} @@ -167687,10 +170323,15 @@ intersection_of: drains UBERON:0002113 ! kidney relationship: drains UBERON:0002113 ! kidney relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: tributary_of UBERON:0001072 ! posterior vena cava +relationship: tributary_of UBERON:0001072 ! inferior vena cava property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted][Wikipedia:Renal_vein]." xsd:string {source="Wikipedia:Renal_vein"} property_value: external_ontology_notes "in EHDAA2, the renal vein is part of the kidney" xsd:string {external_ontology="EHDAA2"} @@ -167711,8 +170352,13 @@ intersection_of: UBERON:0001140 ! renal vein intersection_of: drains UBERON:0004539 ! right kidney relationship: drains UBERON:0004539 ! right kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "A vein that drains blood from the right kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Right_Renal_Vein"} [Term] @@ -167733,8 +170379,13 @@ intersection_of: drains UBERON:0004538 ! left kidney relationship: drains UBERON:0004538 ! left kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/76/Gray1122.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "A vein that drains blood from the left kidney into the inferior vena cava[ncithesaurus]." xsd:string {source="ncithesaurus:Left_Renal_Vein"} [Term] @@ -167772,7 +170423,7 @@ relationship: develops_from UBERON:0005487 {gci_relation="part_of", gci_filler=" relationship: drains UBERON:0002107 ! liver relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0006877 ! vasculature of liver -relationship: tributary_of UBERON:0001072 {source="FMA-abduced-lr"} ! posterior vena cava +relationship: tributary_of UBERON:0001072 {source="FMA-abduced-lr"} ! inferior vena cava property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/61/Gray1121.png" xsd:anyURI property_value: editor_note "todo - add developmental relationships for other taxa" xsd:string @@ -167803,7 +170454,7 @@ is_a: UBERON:0001638 ! vein is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0000473 ! testis -relationship: connected_to UBERON:0001072 ! posterior vena cava +relationship: connected_to UBERON:0001072 ! inferior vena cava relationship: connected_to UBERON:0001330 ! pampiniform plexus relationship: drains UBERON:0000473 ! testis relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism @@ -167911,8 +170562,12 @@ xref: SCTID:279965008 xref: Wikipedia:Bare_area_of_the_liver is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001114 ! right lobe of liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0001150 @@ -167938,8 +170593,14 @@ is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000451", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] @@ -167967,8 +170628,14 @@ relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: homology_notes "Hagfish and lampreys may have one or more endocrine buds - and later the vertebrate pancreas develop as independent ventral and dorsal buds that eventually fuse to become one organ.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000452", ontology="VHOG", source="DOI:10.1016/j.crvi.2007.03.006 Madsen OD, Pancreas phylogeny and ontogeny in relation to a 'pancreatic stem cell'. Comptes Rendus Biologies (2007)", source="http://bgee.unil.ch/"} [Term] @@ -168056,8 +170723,14 @@ relationship: part_of UBERON:0000059 {source="MA"} ! large intestine relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: has_relational_adjective "caecal" xsd:string property_value: taxon_notes "A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates." xsd:string {source="WP"} @@ -168103,8 +170776,14 @@ relationship: part_of UBERON:0000059 ! large intestine relationship: present_in_taxon NCBITaxon:40674 ! Mammalia relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: external_definition "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix[FMA:14542]." xsd:string {source="FMA:14542"} property_value: has_relational_adjective "appendiceal" xsd:string property_value: homology_notes "A comparative anatomical approach reveals three apparent morphotypes of the cecal appendix, as well as appendix-like structures in some species that lack a true cecal appendix. Cladistic analyses indicate that the appendix has evolved independently at least twice (at least once in diprotodont marsupials and at least once in Euarchontoglires), shows a highly significant (P < 0.0001) phylogenetic signal in its distribution, and has been maintained in mammalian evolution for 80 million years or longer.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001306", ontology="VHOG", source="DOI:10.1111/j.1420-9101.2009.01809.x Smith HF, Fisher RE, Everett ML, Thomas AD, Randal Bollinger R, Parker W, Comparative anatomy and phylogenetic distribution of the mammalian cecal appendix. Journal of Evolutionary Biology (2009)", source="http://bgee.unil.ch/"} @@ -168172,7 +170851,7 @@ xref: FMA:14545 xref: galen:AscendingColon xref: MA:0001541 xref: MAT:0000311 -xref: MESH:D044682 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044682 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000311 xref: NCIT:C12265 xref: SCTID:362162009 @@ -168183,8 +170862,14 @@ relationship: continuous_with UBERON:0001157 ! transverse colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI property_value: external_ontology_notes "in MA, this is a subclass of colon" xsd:string {external_ontology="MA"} [Term] @@ -168203,7 +170888,7 @@ xref: FMA:14546 xref: galen:TransverseColon xref: MA:0001543 xref: MAT:0000312 -xref: MESH:D044684 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044684 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000312 xref: NCIT:C12385 xref: SCTID:362163004 @@ -168214,8 +170899,14 @@ relationship: continuous_with UBERON:0001158 ! descending colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0001158 @@ -168233,7 +170924,7 @@ xref: FMA:14547 xref: galen:DescendingColon xref: MA:0001542 xref: MAT:0000313 -xref: MESH:D044683 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044683 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000313 xref: NCIT:C12268 xref: SCTID:362165006 @@ -168244,8 +170935,14 @@ relationship: continuous_with UBERON:0001159 ! sigmoid colon relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ca/Gray1223.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0001159 @@ -168278,8 +170975,14 @@ relationship: continuous_with UBERON:0001052 ! rectum relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Dickdarm-Schema.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0001160 @@ -168617,7 +171320,7 @@ synonym: "biliary tract" RELATED [MA:0001273] xref: AAO:0011020 xref: EMAPA:35172 xref: FMA:14665 -xref: MESH:D001659 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D001659 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:181267003 xref: UMLS:C0005423 {source="ncithesaurus:Biliary_Tract"} xref: Wikipedia:Biliary_tract @@ -168871,8 +171574,13 @@ relationship: supplies UBERON:0002115 ! jejunum relationship: supplies UBERON:0002116 ! ileum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/68/Gray1099.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Superior_mesenteric_a.gif" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: structure_notes "Origin: abdominal aorta; branches, inferior pancreaticoduodenal, jejunal, ileal, ileocolic, right colic, and middle colic arteries; distribution: small intestine, proximal half of colon" xsd:string {source="BTO"} [Term] @@ -168910,8 +171618,13 @@ relationship: supplies UBERON:0001052 ! rectum relationship: supplies UBERON:0001158 ! descending colon relationship: supplies UBERON:0001159 ! sigmoid colon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e4/Gray538.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001184 @@ -168951,8 +171664,13 @@ relationship: branching_part_of UBERON:0001516 {notes="dorsal aorta in Kardong", relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002113 ! kidney property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: editor_note "renal arteries vary widely even in humans. Sub-structures should be checked for taxon variability." xsd:string property_value: external_definition "Artery which supplies blood via branches to the gonads, oviducts, and kidneys.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010223", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted].[Wikipedia]" xsd:string {ontology="Wikipedia", source="Wikipedia:Renal_artery"} @@ -168978,8 +171696,13 @@ intersection_of: supplies UBERON:0004539 ! right kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0004539 ! right kidney property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Gray1120.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001186 @@ -169000,8 +171723,13 @@ intersection_of: UBERON:0001184 ! renal artery intersection_of: supplies UBERON:0004538 ! left kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0004538 ! left kidney -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001187 @@ -169206,8 +171934,14 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002106 ! spleen property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: seeAlso "https://github.com/obophenotype/uberon/issues/268" xsd:anyURI [Term] @@ -169256,8 +171990,13 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0001157 ! transverse colon property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Gray537.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001197 @@ -169287,8 +172026,6 @@ relationship: supplies UBERON:0001153 ! caecum relationship: supplies UBERON:0001154 ! vermiform appendix relationship: supplies UBERON:0002116 ! ileum property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ad/Gray536.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001198 @@ -169834,7 +172571,9 @@ relationship: drains UBERON:0000059 ! large intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0003713 {source="FMA/obol"} ! splenic vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001216 @@ -169896,8 +172635,13 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001138 ! superior mesenteric vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001219 @@ -169925,8 +172669,13 @@ relationship: drains UBERON:0002116 ! ileum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001138 ! superior mesenteric vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001220 @@ -170005,8 +172754,14 @@ is_a: UBERON:0000056 ! ureter intersection_of: UBERON:0000056 ! ureter intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.0/assets/VH_F_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.1/assets/VH_F_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-right/v1.2/assets/3d-vh-f-ureter-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.0/assets/VH_M_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.1/assets/VH_M_Ureter_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-right/v1.2/assets/3d-vh-m-ureter-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -170023,8 +172778,14 @@ is_a: UBERON:0000056 ! ureter intersection_of: UBERON:0000056 ! ureter intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.0/assets/VH_F_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.1/assets/VH_F_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-female-left/v1.2/assets/3d-vh-f-ureter-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.0/assets/VH_M_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.1/assets/VH_M_Ureter_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/ureter-male-left/v1.2/assets/3d-vh-m-ureter-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -170061,6 +172822,14 @@ relationship: contributes_to_morphology_of UBERON:0000056 ! ureter relationship: part_of UBERON:0002113 {source="MA"} ! kidney relationship: part_of UBERON:0036295 ! renal pelvis/ureter relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg" xsd:anyURI [Term] @@ -170092,10 +172861,22 @@ relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0008987 {source="FMA"} ! renal parenchyma relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: structure_notes "In the adult metanephros, it forms a continuous smooth outer zone with a number of projections that extend down between the pyramids. It contains the renal corpuscles and the renal tubules except for parts of the loop of Henle which descend into the renal medulla. It also contains blood vessels and cortical collecting ducts. The renal cortex is the part of the kidney where ultrafiltration occurs.[WP]" xsd:string @@ -170114,6 +172895,14 @@ xref: MA:0001644 xref: SCTID:1106008 xref: Wikipedia:Major_calyx is_a: UBERON:0006517 ! kidney calyx +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] @@ -170131,6 +172920,14 @@ xref: MA:0001645 xref: SCTID:26293004 xref: Wikipedia:Minor_calyx is_a: UBERON:0006517 ! kidney calyx +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] @@ -170156,10 +172953,20 @@ relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001294 ! inner medulla of kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Ureter_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI [Term] @@ -170707,7 +173514,7 @@ synonym: "proctodeum" RELATED [] xref: BTO:0001680 xref: CALOHA:TS-2005 xref: EV:0100082 -xref: FBbt:00047153 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00047153 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:15711 xref: GAID:312 xref: galen:Anus @@ -170778,8 +173585,12 @@ relationship: attaches_to UBERON:0002107 ! liver relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0002095 {source="FMA-modified"} ! mesentery relationship: part_of UBERON:0005626 {source="MA"} ! ventral mesogastrium -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: external_ontology_notes "in FMA this is a subclass of mesentery. In MA it is a subclass of ligament, we infer and assert this is a nonskeletal ligament" xsd:string {external_ontology="FMA"} [Term] @@ -170807,8 +173618,14 @@ intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a2/Gray1188.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.3/assets/3d-vh-f-spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.3/assets/3d-vh-m-spleen.glb" xsd:anyURI [Term] id: UBERON:0001249 @@ -170841,8 +173658,8 @@ relationship: part_of UBERON:0001959 {source="CL:tm", source="MA"} ! white pulp relationship: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0006561 {source="FMA"} ! non-lymphatic part of lymphoid system relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0001250 @@ -171008,8 +173825,12 @@ relationship: located_in UBERON:0002323 ! coelemic cavity lumen relationship: never_in_taxon NCBITaxon:8782 {editor="https://orcid.org/0000-0003-3308-6245", id="GOTAX:0010073", source="https://github.com/obophenotype/uberon/issues/454"} ! Aves relationship: part_of UBERON:0001556 {source="FMA"} ! lower urinary tract relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.2/assets/3d-vh-f-urinary-bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.2/assets/3d-vh-m-urinary-bladder.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/3/30/Urinary_system.svg" xsd:anyURI property_value: external_definition "A saccular organ in which urine accumulates before discharge from the body. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-29, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000740", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: external_definition "Anatomical structure which consists of a membranous sac used to temporarily store urine until it is excreted from the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000623", ontology="AAO", source="AAO:BJB"} @@ -171074,8 +173895,12 @@ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0006082 ! fundus of urinary bladder relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.2/assets/3d-vh-f-urinary-bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.2/assets/3d-vh-m-urinary-bladder.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/57/Illu_bladder.jpg" xsd:anyURI property_value: development_notes "Embryologically, the trigone of the bladder is derived from the caudal end of mesonephric ducts, which is of mesodermal origin (the rest of the bladder is endodermal). In the female the mesonephric ducts regresses, causing the trigone to be less prominent, but still present" xsd:string {source="WP"} property_value: function_notes "The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill." xsd:string @@ -171238,7 +174063,7 @@ synonym: "acinus pancreaticus" EXACT OMO:0003011 [FMA:16011] synonym: "pancreas acinus" EXACT [] synonym: "pancreatic acinar" RELATED [] synonym: "pancreatic acini" RELATED OMO:0003004 [] -xref: BTO:0000028 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0000028 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35651 xref: FMA:16011 xref: MA:0002417 @@ -171299,8 +174124,14 @@ relationship: has_part UBERON:0000017 {gci_relation="part_of", gci_filler="NCBIT relationship: located_in UBERON:0002323 ! coelemic cavity lumen relationship: only_in_taxon NCBITaxon:7742 {source="PMID:16417468"} ! Vertebrata relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.2/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Blausen_0699_PancreasAnatomy2.png" xsd:anyURI property_value: external_definition "Organ which secretes a fluid containing enzymes that aid in the digestion of food.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010112", ontology="AAO", source="AAO:BJB"} property_value: function_notes "The mature pancreas of higher vertebrates and mammals comprises two major functional units: the exocrine pancreas, which is responsible for the production of digestive enzymes to be secreted into the gut lumen, and the endocrine pancreas, which has its role in the synthesis of several hormones with key regulatory functions in food uptake and metabolism. The exocrine portion constitutes the majority of the mass of the pancreas, and contains only two different cell types, the secretory acinar cells and the ductular cells. The endocrine portion, which comprises only 1-2% of the total mass, contains five different cell types, which are organized into mixed functional assemblies referred to as the islets of Langerhans" xsd:string {source="PMID:16417468"} @@ -171354,6 +174185,7 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:0001267 name: femoral nerve def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve] +subset: human_reference_atlas subset: uberon_slim synonym: "anterior crural nerve" EXACT [] synonym: "nervus femoralis" RELATED OMO:0003011 [Wikipedia:Femoral_nerve] @@ -171372,6 +174204,7 @@ xref: Wikipedia:Femoral_nerve is_a: UBERON:0003431 ! leg nerve relationship: innervates UBERON:0004482 ! musculature of lower limb relationship: part_of UBERON:0000978 ! leg +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7c/Gray823.png" xsd:anyURI [Term] @@ -171384,7 +174217,7 @@ xref: BTO:0001031 xref: EMAPA:35683 xref: FMA:16515 xref: MA:0002531 -xref: MESH:D001202 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D001202 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ncithesaurus:Peritoneal_Fluid xref: Wikipedia:Peritoneal_fluid is_a: UBERON:0007779 ! transudate @@ -171438,8 +174271,14 @@ disjoint_from: UBERON:0002355 ! pelvic region of trunk relationship: has_part UBERON:0001274 ! ischium relationship: has_part UBERON:0001275 ! pubis relationship: has_part UBERON:0003690 ! fused sacrum -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: editor_note "TODO add taxon-specific part of relations connecting sub-structures to this." xsd:string property_value: external_ontology_notes "in FMA, this is part of the axial skeletal system" xsd:string {external_ontology="FMA"} @@ -171541,13 +174380,19 @@ relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} ! Teleostei relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone relationship: part_of UBERON:0007832 {source="VSAO"} ! pelvic girdle skeleton -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Paired, rodlike endochondral bones that constitute the anterior pelvic girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000772", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "this is_a hip bone in MA." xsd:string {external_ontology="MA"} property_value: has_relational_adjective "iliac" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "All reptiles have an ilium except snakes, although some snake species have a tiny bone which is considered to be an ilium" xsd:string {source="WP"} [Term] @@ -171585,8 +174430,14 @@ relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 ! innominate bone relationship: part_of UBERON:0007832 {source="VSAO"} ! pelvic girdle skeleton property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Illu_pelvic_girdle.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Paired bones of endochondral origin that constitute the posterior elements of the pelvic girdle. They are synostotically fused to each other and form the posterior part of the acetabulum.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000860", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "this is_a hip bone in MA; in FMA it is a zone of bone organ." xsd:string {external_ontology="MA"} property_value: has_relational_adjective "ischial" xsd:string @@ -171623,12 +174474,18 @@ relationship: develops_from UBERON:0010718 ! pubic cartilage element relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone relationship: part_of UBERON:0007832 {source="VSAO"} ! pelvic girdle skeleton -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Paired, cartilaginous (ocassionally calcified) elements that form the ventral portion of the pelvic girdle. Each is located ventral to the acetabulum between the anteroventral margin of the ischium and the posteroventral margin of the illium. When the element calcifies or ossifies, its articulation with adjacent elements is difficult to distinguish. Both pubes are synchondrotically fused to one another.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000861", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "isa bone zone in FMA" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0001276 @@ -171903,10 +174760,22 @@ xref: Wikipedia:Renal_column is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:8410073 ! medullary region of kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/c0/Illu_kidney2.jpg" xsd:anyURI [Term] @@ -172484,7 +175353,9 @@ is_a: UBERON:0003889 ! fallopian tube intersection_of: UBERON:0003889 ! fallopian tube intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.0/assets/VH_F_Fallopian_Tube_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.1/assets/VH_F_Fallopian_Tube_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-right/v1.2/assets/3d-vh-f-fallopian-tube-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "non-functional in monotremes[ISBN:978-0226870137]" xsd:string @@ -172504,7 +175375,9 @@ is_a: UBERON:0003889 ! fallopian tube intersection_of: UBERON:0003889 ! fallopian tube intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Fallopian_Tube_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.0/assets/VH_F_Fallopian_Tube_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.1/assets/VH_F_Fallopian_Tube_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/fallopian-tube-female-left/v1.2/assets/3d-vh-f-fallopian-tube-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -172696,7 +175569,8 @@ is_a: UBERON:0010260 ! umbilical blood vessel relationship: overlaps UBERON:0002331 {source="cjm"} ! umbilical cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI property_value: editor_note "todo - compare with EHDAA2. Check embryonic vs extraembryonic, developmental relationships" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/328" xsd:anyURI @@ -172840,7 +175714,9 @@ is_a: UBERON:0005610 {source="MA"} ! iliac vein relationship: connected_to UBERON:0001139 ! common iliac vein relationship: drains UBERON:0002103 ! hindlimb relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/65/Iliac_veins.gif" xsd:anyURI [Term] @@ -172868,8 +175744,13 @@ relationship: connected_to UBERON:0001139 ! common iliac vein relationship: drains UBERON:0005179 ! pelvic region element relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/cb/Internaliliacv.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001318 @@ -173123,10 +176004,10 @@ is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe intersection_of: part_of UBERON:0002367 ! prostate gland relationship: part_of UBERON:0002367 ! prostate gland -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tfhayamizu -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/uberon +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky +property_value: dc:contributor https://github.com/tfhayamizu +property_value: dc:contributor https://github.com/uberon property_value: taxon_notes "Anatomically, the human prostate gland is located between the base of the bladder and the rectum, and it completely surrounds the proximal urethra (Fig. 1A). It is a single alobular structure with central (CZ), peripheral (PZ) and transitional (TZ) zones. In contrast, the mouse prostate is not merged into one compact anatomical structure. It comprises four paired lobes situated circumferentially around the urethra, immediately caudal to the urinary bladder-namely, anterior (AP), dorsal (DP), lateral (LP), and ventral (VP) prostate (Fig. 1B). Often, the dorsal and the lateral lobes are thought of in combination and referred to as the dorsolateral (DLP) lobe as they share a ductal system. The mouse AP is considered analogous to the human CZ, which is rarely a site of neoplastic transformation in humans. The mouse DLP is considered most similar to the human PZ, which is the zone in which most carcinomas arise (Xue et al. 1997). These analogies, however, are limited as they are based solely on descriptive data and need to be re-evaluated using molecular techniques before the relationship between specific mouse prostate lobes and the human prostate zones is definitively asserted (Abate-Shen & Shen 2000). The mouse VP does not have a human homologue, and the human TZ does not have a murine homologue" xsd:string {source="PMID:15163300", source="https://github.com/obophenotype/uberon/issues/665"} [Term] @@ -173249,7 +176130,6 @@ is_a: UBERON:0000057 ! urethra intersection_of: UBERON:0000057 ! urethra intersection_of: part_of UBERON:0003101 ! male organism relationship: part_of UBERON:0003101 ! male organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cb/Female_anatomy.png" xsd:anyURI [Term] @@ -173301,7 +176181,6 @@ relationship: located_in UBERON:0002367 {source="FMA"} ! prostate gland relationship: part_of UBERON:0001333 {source="FMA", source="MA"} ! male urethra relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d7/Gray1142.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urethra.glb" xsd:anyURI [Term] id: UBERON:0001336 @@ -173604,7 +176483,7 @@ xref: EMAPA:35926 xref: FMA:20117 xref: MA:0000058 xref: MAT:0000199 -xref: MESH:D052436 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D052436 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000199 xref: NCIT:C33889 xref: UMLS:C1704223 {source="ncithesaurus:White_Adipose_Tissue"} @@ -173701,8 +176580,14 @@ relationship: develops_from UBERON:0007144 ! embryonic post-anal tail relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Gray100.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_definition "Small, bony element consisting of several fused, rudimentary caudal vertebrae; near metamorphosis the hypochord fuses to the coccyx, thereby forming the urostyle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000731", ontology="AAO", source="AAO:Pugener_2002", source="AAO:Pugener_and_Maglia_2008"} property_value: has_relational_adjective "coccygeal" xsd:string property_value: taxon_notes "In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx." xsd:string {source="WP,unvetted"} @@ -174405,7 +177290,7 @@ xref: EMAPA:19146 xref: FMA:22428 xref: galen:QuadricepsFemoris xref: MA:0002363 -xref: MESH:D052097 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D052097 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33441 xref: SCTID:181669009 xref: UMLS:C0224440 {source="ncithesaurus:Quadriceps_Muscle_of_the_Thigh"} @@ -175647,12 +178532,12 @@ xref: UMLS:C0223724 {source="ncithesaurus:Scaphoid_Bone"} xref: Wikipedia:Scaphoid is_a: UBERON:0001480 ! proximal carpal bone relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: editor_note "TODO - check AAO placement; in rodents this is fused with the lunate to make the scapholunate" xsd:string property_value: external_definition "One of two element that constitute the basal row of carpals. It articulates proximally with the radius, mesially with the ulnare (or pars intermedia of the ulnare when the ulnare is fused to the intermedium) and distally with the centrale (also recognized by some authors as element Y). This element originates from one or two condensation centers. Occasionally it may fuse to carpal 5(4), the ulnare, or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000790", ontology="AAO", source="AAO:LAP"} property_value: external_definition "the bone of the hand located at the radial side of the carpus and which articulates with the radius, trapezium, trapezoideum, capitate, and lunate bones" xsd:string {source="MP:0010775,MGI:llw2"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: terminology_notes "In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius[WP]" xsd:string [Term] @@ -175688,9 +178573,9 @@ is_a: UBERON:0001480 {source="FMA"} ! proximal carpal bone relationship: connected_to UBERON:0001427 ! radiale relationship: connected_to UBERON:0002445 ! ulnare relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "articulating with the ulnare and the radiale[VSAO]. human articulations: radius proximally capitate and hamate distally scaphoid laterally triangular medially" xsd:string [Term] @@ -175714,10 +178599,10 @@ xref: Wikipedia:Pisiform_bone is_a: UBERON:0001480 {source="FMA", source="MA"} ! proximal carpal bone is_a: UBERON:0007997 ! sesamoid bone of manus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: editor_note "check: accessory carpal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0001430 @@ -176075,7 +178960,7 @@ xref: EMAPA:35250 xref: FMA:24018 xref: galen:CorticalBone xref: MA:0001461 -xref: MESH:D000071538 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D000071538 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C52714 xref: SCTID:361728003 xref: UMLS:C0222661 {source="ncithesaurus:Cortical_Bone"} @@ -176083,8 +178968,14 @@ xref: Wikipedia:Compact_bone is_a: UBERON:0002481 ! bone tissue disjoint_from: UBERON:0002483 ! trabecular bone tissue relationship: part_of UBERON:0002482 ! lamellar bone -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI [Term] id: UBERON:0001440 @@ -176189,8 +179080,8 @@ disjoint_from: UBERON:0001445 {source="lexical"} ! skeleton of pes relationship: part_of UBERON:0001440 {source="EHDAA2"} ! forelimb skeleton relationship: part_of UBERON:0002398 ! manus relationship: skeleton_of UBERON:0002398 ! manus -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] @@ -176269,8 +179160,8 @@ intersection_of: skeleton_of UBERON:0002387 ! pes relationship: part_of UBERON:0001441 {source="EHDAA2"} ! hindlimb skeleton relationship: part_of UBERON:0002387 ! pes relationship: skeleton_of UBERON:0002387 ! pes -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Skeleton-partonomy-Design-Pattern" xsd:anyURI [Term] @@ -176457,11 +179348,11 @@ relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0010842 ! calcaneum cartilage element relationship: postaxialmost_part_of UBERON:0009879 ! tarsal skeleton relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/a/a9/Subtalar_Joint.PNG" xsd:anyURI property_value: has_relational_adjective "calcaneal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "synonymous with the fibulare of basal tetrapods." xsd:string [Term] @@ -177170,7 +180061,7 @@ xref: EMAPA:35532 xref: FMA:30315 xref: MA:0000138 xref: MAT:0000443 -xref: MESH:D042601 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D042601 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33038 xref: SCTID:279089004 xref: UMLS:C0229889 {source="ncithesaurus:Lymphatic_Vessel"} @@ -177864,8 +180755,14 @@ relationship: has_developmental_contribution_from UBERON:0005432 ! aortic sac relationship: part_of UBERON:0001515 ! thoracic aorta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001497 @@ -178153,8 +181050,14 @@ relationship: part_of UBERON:0001515 ! thoracic aorta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "Do not confuse with aortic arch" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "The curving portion between the ascending aorta and the descending aorta, giving rise to the brachiocephalic trunk, the left common carotid artery, and the left subclavian artery. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/arch+of+aorta"} property_value: homology_notes "The double systemic arch arches (left and right) present in amphibians and reptiles become reduced to a single systemic arch - the right in birds, the left in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001196", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.460 and p.461 Figure 12.20", source="http://bgee.unil.ch/"} property_value: taxon_notes "birds have right aortic arch, mammals left." xsd:string @@ -178295,8 +181198,14 @@ relationship: part_of UBERON:0000947 {source="FMA"} ! aorta relationship: part_of UBERON:0001009 ! circulatory system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: development_notes "results from fusion of left and right dorsal aortae" xsd:string [Term] @@ -178671,8 +181580,14 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0007204 ! brachiocephalic vasculature relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001530 @@ -178904,8 +181819,14 @@ is_a: UBERON:0001530 {source="FMA"} ! common carotid artery plus branches relationship: connected_to UBERON:0001508 ! arch of aorta relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_ontology_notes "placement of the MA class here is not strictly correct, as the MA class does not include the branches" xsd:string [Term] @@ -179299,11 +182220,11 @@ xref: BTO:0000545 xref: EHDAA2:0000726 xref: EHDAA:518 xref: EMAPA:16247 -xref: FBbt:00003125 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003125 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:45615 xref: galen:AlimentaryTract xref: MA:0000917 -xref: MESH:D041981 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D041981 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34082 xref: TAO:0000112 xref: TGMA:0001819 @@ -179815,12 +182736,12 @@ relationship: develops_from UBERON:0011332 ! extrinsic tongue pre-muscle mass relationship: immediate_transformation_of UBERON:0011332 ! extrinsic tongue pre-muscle mass relationship: innervated_by UBERON:0001650 {notes="check palatoglossus", source="Wikipedia"} ! hypoglossal nerve relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/RDruzinsky property_value: function_notes "main functions are altering the tongue's position allowing for protrusion, retraction, and side-to-side movement" xsd:string {source="WP"} property_value: homology_notes "The lamprey head contains another group of muscles, the epi- and hypo-branchial muscles (EBM and HBM), derivatives of anterior trunk myotomes. (...) The origin and the migration pattern of HBM precursors are very similar to that of the gnathostome MPP, especially to that of the tongue muscle precursors. Other evidence of homology of lamprey HBM to the gnathostome tongue muscle is that HBM is innervated by the nerve termed the hypoglossal nerve based on its morphological position associated with the head/trunk interface. (...) The HBM-specific expression of the LampPax3/7 gene is consistent with the homology of this muscle to the gnathostome tongue muscle, or to the hypobranchial series as a whole (including the infrahyoid and possibly the diaphragm in mammals).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000825", ontology="VHOG", source="DOI:10.1002/dvdy.20587 Kusakabe R, Kuratani S, Evolution and developmental patterning of the vertebrate skeletal muscles: perspectives from the lamprey. Developmental Dynamics (2005)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky property_value: structure_notes "All intrinsic and extrinsic muscles of the tongue are supplied by the hypoglossal nerve (CN XII), except for one of the extrinsic muscles, palatoglossus, which is innervated by the Vagus nerve CN X of the pharyngeal plexus." xsd:string {source="WP"} [Term] @@ -180105,8 +183026,14 @@ relationship: connected_to UBERON:0001508 ! arch of aorta relationship: in_left_side_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e6/Gray506.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: development_notes "arises from left intersegmental 6th artery in the region of the 6th -7th cervical segment in humans" xsd:string property_value: taxon_notes "in humans, branches off the arch of aorta" xsd:string @@ -180577,7 +183504,7 @@ xref: EHDAA:5729 xref: EMAPA:18234 xref: FMA:49033 xref: MA:0001271 -xref: MESH:D009801 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009801 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:181150000 xref: TAO:0000511 xref: VHOG:0000549 @@ -181112,8 +184039,11 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of internal carotid (AAO:0010219)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/ce/Gray514.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_definition "Part of internal carotid which carries blood via branches to the eye, the eye muscles, and eyelids.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010497", ontology="AAO", source="AAO:BJB"} [Term] @@ -181266,8 +184196,14 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0000948 ! heart relationship: supplies UBERON:0002349 ! myocardium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/46/Gray492.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001626 @@ -181291,8 +184227,14 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0000948 ! heart relationship: supplies UBERON:0002349 ! myocardium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Gray495.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0001627 @@ -181630,6 +184572,8 @@ is_a: UBERON:0003509 ! arterial blood vessel relationship: channels_from UBERON:0000948 ! heart relationship: fma_set_term FMA:63812 relationship: part_of UBERON:0004572 ! arterial system +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI property_value: editor_note "Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme." xsd:string property_value: external_definition "Part of the circulatory system composed of blood vessels which carry oxygenated blood away from the heart to the rest of the body.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010211", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "Some arthropods have primitive arterial systems but this term refers to arteries in a true closed circulatory system." xsd:string @@ -181680,6 +184624,8 @@ relationship: channel_for UBERON:0013756 ! venous blood relationship: channels_from UBERON:0001982 ! capillary relationship: fma_set_term FMA:63814 property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI property_value: editor_note "TODO - check with MA - vein vs venous blood vessel" xsd:string property_value: external_definition "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010212", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "venous" xsd:string @@ -181715,8 +184661,14 @@ relationship: overlaps UBERON:0002107 ! liver relationship: part_of UBERON:0010194 ! hepatic portal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/33/Gray591.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: homology_notes "Adults of all vertebrates lose the vitelline veins and establish a single large hepatic portal vein (...) by the selective retention of parts of the left and right subintestinals and of several anastomoses that occur between them within and just posterior to the liver.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000642", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.265", source="http://bgee.unil.ch/"} property_value: taxon_notes "In humans A vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]" xsd:string @@ -181758,6 +184710,8 @@ relationship: indirectly_supplies UBERON:0002106 {source="ISBN:0073040584"} ! sp relationship: indirectly_supplies UBERON:0002107 {source="ISBN:0073040584"} ! liver relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI [Term] id: UBERON:0001641 @@ -181796,7 +184750,7 @@ synonym: "sinus sagittalis superior" RELATED OMO:0003011 [Wikipedia:Superior_sag xref: EMAPA:18636 xref: FMA:50767 xref: MA:0001867 -xref: MESH:D054063 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054063 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12515 xref: SCTID:362075006 xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"} @@ -181959,7 +184913,6 @@ xref: EHDAA:3738 xref: EMAPA:17576 xref: FMA:50866 xref: GAID:726 -xref: HBA:9322 xref: MA:0001100 xref: MBA:901 xref: MESH:D014276 @@ -182216,7 +185169,6 @@ xref: EHDAA:3733 xref: EMAPA:17268 xref: FMA:50870 xref: GAID:827 -xref: HBA:9334 xref: MA:0001093 xref: MBA:808 xref: MESH:D005930 @@ -182273,7 +185225,6 @@ xref: EHDAA:2859 xref: EMAPA:17269 xref: FMA:50871 xref: GAID:828 -xref: HBA:9343 xref: MA:0001094 xref: MBA:813 xref: MESH:D007002 @@ -182328,8 +185279,14 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002167 ! right lung property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: editor_note "TODO - add class 'pulmonary artery tree organ'" xsd:string @@ -182358,8 +185315,14 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002168 ! left lung property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray504.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: editor_note "TODO - add class 'pulmonary artery tree organ'" xsd:string @@ -182877,12 +185840,12 @@ intersection_of: extends_fibers_into UBERON:0001645 ! trigeminal nerve relationship: develops_from UBERON:0006304 ! future trigeminal ganglion relationship: extends_fibers_into UBERON:0001645 ! trigeminal nerve relationship: immediate_transformation_of UBERON:0006304 {source="Bgee:AN"} ! future trigeminal ganglion +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/69/Gray776.png" xsd:anyURI property_value: editor_note "consider renaming this 'trigeminal ganglion complex'. The complex may be fused (amniotes) partially fused (xenopus) or separate (sharks)" xsd:string property_value: external_definition "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000295", ontology="TAO", source="ZFIN:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "In Xenopus, the profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24." xsd:string {source="PMID:21452441", source="XAO:0004093"} [Term] @@ -183042,6 +186005,7 @@ subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core +synonym: "ectethmoid" RELATED [UBERON:3010146] synonym: "infraorbital 1" RELATED SENSU [VHOG:0001149, ZFA:0000223] synonym: "lachrymal bone" EXACT [] synonym: "lachrymal bone - infraorbital 1" RELATED [VHOG:0001149] @@ -183185,7 +186149,7 @@ xref: EMAPA:25111 xref: FMA:52747 xref: GAID:225 xref: MA:0001497 -xref: MESH:D015050 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D015050 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MFMO:0000146 xref: SCTID:272683001 xref: VHOG:0001638 @@ -183324,12 +186288,12 @@ relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0003099 {source="PMID:11237469", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! cranial neural crest relationship: part_of UBERON:0001756 {source="MA"} ! middle ear relationship: part_of UBERON:0008895 {source="PMID:11523816"} ! splanchnocranium +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b0/Illu_auditory_ossicles.jpg" xsd:anyURI property_value: development_notes "Studies have shown that ear bones in mammal embryos are attached to the dentary, which is part of the jaw. These are ossified portions of cartilage -- called Meckel's cartilage -- that are attached to the jaw. As the embryo develops, the cartilage hardens to form bone. Later in development, the bone structure breaks loose from the jaw and migrates to the inner ear area. The structure is known as the middle ear, and is made up of the incus, stapes, malleus, and tympanic membrane. These correspond to the quadrate, prearticular, articular, and angular structures in the reptile jaw. For this reason, researchers believe the similarity of the results shows that mammals and reptiles have a common ancestry." xsd:string {source="WP"} property_value: editor_note "This should probably be restricted to mammals - the AAO/XAO structures may group non-homologous structures [Wikipedia:Evolution_of_mammalian_auditory_ossicles] see https://github.com/seger/aao/issues/5." xsd:string property_value: external_definition "The small bones of the middle ear: incus, malleus, and stapes. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/auditory+ossicles"} property_value: homology_notes "Additional structural analysis within a phylogenetic context has led to the remarkable discovery that in synapsids, thought to be ancestral to mammals, both the quadrate and articular have become reduced and less firmly articulated with their surrounding bones, reducing their jaw-joint-bearing role. This trend culminated with the incorporation of the quadrate, the columella (which remains articulated with the quadrate), and the articular into the expanded middle ear in mammals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000461", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.695", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0001687 @@ -183677,13 +186641,13 @@ relationship: develops_from UBERON:0010751 ! squamous part of temporal bone prim relationship: part_of UBERON:0001678 {notes="see comments"} ! temporal bone relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0004339 {source="EHDAA2", source="PMID:11523816"} ! vault of skull +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Skull_synapsida_1.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fd/Gray144.png" xsd:anyURI property_value: editor_note "consider separate class for squamosal OR making squamosal the primary label" xsd:string property_value: external_definition "Paired, intramembranous bones that lie at the posterolateral margins of the skull. Lateral and dorsal to the quadrate.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000574", ontology="AAO", source="AAO:EJS"} property_value: external_definition "The squamosal bone is part of the dermatocranium in early tetrapods and becomes part of the mammalian occipital and temporal bones. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Grande_L, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF, p.246, see_Liem_KF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001561", ontology="VHOG", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "The squamosal bone, which is homologous with the squama, and forms the side of the cranium in many bony fish and tetrapods. Primitively, it is a flattened plate-like bone, but in many animals it is narrower in form, for example, where it forms the boundary between the two temporal fenestrae of diapsid reptiles" xsd:string [Term] @@ -183779,6 +186743,7 @@ id: UBERON:0001700 name: geniculate ganglion def: "The group of sensory neuron cell bodies associated with the facial nerve (seventh cranial nerve)." [ISBN:0-683-40008-8, MP:0001082] subset: efo_slim +subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -183821,6 +186786,7 @@ relationship: develops_from UBERON:0009124 {source="EHDAA2:0004623", source="ZFA relationship: develops_from UBERON:0010258 {source="EHDAA2:0004623"} ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0012175 {source="EHDAA2:0000491"} ! acoustico-facial VII-VIII ganglion complex relationship: extends_fibers_into UBERON:0001647 ! facial nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray789.png" xsd:anyURI property_value: editor_note "resolve facial VII vs geniculate (see EHDAA2)" xsd:string property_value: homology_notes "These (the epibranchial placodes) are focal thickenings of the embryonic ectoderm that form immediately dorsal and caudal of the clefts between the pharyngeal arches in all vertebrates, and they produce the neuroblasts which migrate and condense to form the distal cranial ganglia: the geniculate, petrosal and nodose ganglia. (...) The one substantial difference between the vertebrate pharyngeal arches and those of the protochordates is the presence of the epibranchial placodes but the evolution of these structures was undoubtedly driven by the endoderm.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000707", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} @@ -183954,8 +186920,8 @@ relationship: composed_primarily_of GO:0045095 ! keratin filament relationship: develops_from UBERON:0011272 {source="Wikipathways:WP2062"} ! embryonic skin basal layer relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis property_value: curator_notes "Use this class for both the nails of primates and the homologous claws of mammals such as mouse." xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: taxon_notes "A primate's nail consists of the unguis alone; the subunguis has disappeared" xsd:string [Term] @@ -184323,7 +187289,7 @@ xref: FMA:54510 xref: HBA:9030 xref: MA:0001073 xref: MBA:35 -xref: MESH:D065838 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065838 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12897 xref: neuronames:492 {source="BIRNLEX:1240"} xref: SCTID:362457000 @@ -185083,8 +188049,10 @@ relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primo relationship: innervated_by UBERON:0003716 ! recurrent laryngeal nerve relationship: part_of UBERON:0000065 ! respiratory tract property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "An anatomical cluster consisting of the epiglottus, the arytenoid cartilages, the thyroid cartilage, the cricoid cartilage and the muscles, membranes, and ligaments connecting them, and also of the mucosal covering these structures.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_definition "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000268", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "laryngeal" xsd:string @@ -185117,8 +188085,10 @@ is_a: UBERON:0001739 ! laryngeal cartilage relationship: develops_from UBERON:0010219 {source="EHDAA2"} ! thyroid pre-cartilage condensation relationship: part_of UBERON:0010212 {source="EHDAA2"} ! laryngeal apparatus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "The largest cartilage of the larynx, having two broad processes that join anteriorly to form the Adam's apple. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/thyroid+cartilage"} property_value: homology_notes "[In anura] a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) [In mammals] Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001365", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} @@ -185152,8 +188122,10 @@ relationship: fma_set_term FMA:64159 relationship: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0008895 {source="https://github.com/obophenotype/uberon/wiki/The-axial-skeleton"} ! splanchnocranium relationship: part_of UBERON:0010212 ! laryngeal apparatus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001550", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} [Term] @@ -185183,8 +188155,14 @@ is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0010220 {source="cjm"} ! arytenoid pre-cartilage condensation relationship: in_lateral_side_of UBERON:0001737 ! larynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fa/Gray950.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI property_value: external_definition "Paired, anteroposteriorly elongated cartilages that are associated with the vocal cords. These cartilages are medially separated and hemispherical, and their concave side faces ventromedially.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000674", ontology="AAO", source="AAO:LAP"} [Term] @@ -185208,8 +188186,10 @@ relationship: has_developmental_contribution_from UBERON:0003117 ! pharyngeal ar relationship: part_of UBERON:0001737 {source="FMA"} ! larynx relationship: part_of UBERON:0008895 ! splanchnocranium property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI [Term] id: UBERON:0001742 @@ -185219,7 +188199,7 @@ subset: uberon_slim xref: EMAPA:37522 {source="MA:th"} xref: FMA:55112 xref: MA:0001763 -xref: MESH:D004825 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D004825 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32526 xref: SCTID:278990001 xref: UMLS:C0458526 {source="ncithesaurus:Epiglottic_Cartilage"} @@ -185229,8 +188209,10 @@ intersection_of: UBERON:0001739 ! laryngeal cartilage intersection_of: part_of UBERON:0000388 ! epiglottis relationship: composed_primarily_of UBERON:0001996 ! elastic cartilage tissue relationship: part_of UBERON:0000388 ! epiglottis -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_ontology_notes "laryngeal cartilage in MP" xsd:string {external_ontology="MP"} [Term] @@ -185682,7 +188664,6 @@ xref: EMAPA:37797 {source="MA:th"} xref: FMA:5731 xref: GAID:721 xref: galen:VagusNerve -xref: HBA:9337 xref: MA:0001106 xref: MBA:917 xref: MESH:D014630 @@ -186561,7 +189542,6 @@ xref: EHDAA2:0000323 xref: EMAPA:17264 xref: FMA:5865 xref: GAID:802 -xref: HBA:9299 xref: MA:0000215 xref: MBA:967 xref: MESH:D003391 @@ -187036,7 +190016,7 @@ xref: ENVO:02000032 xref: EV:0100344 xref: FMA:58822 xref: MA:0001286 -xref: MESH:D014822 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D014822 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C13323 xref: UMLS:C0229096 {source="ncithesaurus:Vitreous_Humor"} xref: VHOG:0000795 @@ -187295,7 +190275,7 @@ xref: EHDAA2:0001969 xref: EMAPA:17157 xref: FMA:5890 xref: MA:0000226 -xref: MESH:D005728 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005728 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12467 xref: SCTID:362485003 xref: UMLS:C0017071 {source="ncithesaurus:Sympathetic_Ganglion"} @@ -187357,7 +190337,7 @@ xref: EHDAA2:0001400 xref: EMAPA:32813 xref: FMA:5894 xref: MA:0002469 -xref: MESH:D005726 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005726 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C52557 xref: NLXANAT:100303 xref: SCTID:279284004 @@ -187478,6 +190458,7 @@ relationship: part_of UBERON:0001711 {source="FMA", source="MA"} ! eyelid id: UBERON:0001813 name: spinal nerve plexus def: "An intermingling of fiber fascicles from adjacent spinal nerves to form a network." [http://www.medilexicon.com/medicaldictionary.php?t=70024] +subset: human_reference_atlas synonym: "plexus nervorum spinalium" EXACT OMO:0003011 [FMA:5903, FMA:TA] synonym: "plexus of spinal nerves" EXACT [FMA:5903] synonym: "somatic nerve plexus" EXACT [FMA:5903] @@ -187495,6 +190476,7 @@ intersection_of: UBERON:0001810 ! nerve plexus intersection_of: extends_fibers_into UBERON:0001780 ! spinal nerve relationship: extends_fibers_into UBERON:0001780 ! spinal nerve relationship: part_of RO:0002577 ! system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: homology_notes "To reach the muscles, dermatomes, and other structures of the limbs, some of the neurons in the spinal nerves come together in the plexus at the base of the limb. Such plexuses occur in all gnathostomes, and they reach their highest complexity among mammals and birds in which the cervical plexus supplies many ventral neck muscles, the brachial plexus supplies the pectoral appendage, a lumbosacral plexus supplies the pelvic appendage, and a coccygeal plexus supplies some of the pelvic muscles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000926", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.436", source="http://bgee.unil.ch/"} [Term] @@ -187777,7 +190759,7 @@ xref: CALOHA:TS-0655 xref: EMAPA:37681 {source="MA:th"} xref: FMA:59502 xref: MA:0001883 -xref: MESH:D055171 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055171 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C49593 xref: SCTID:278941001 xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"} @@ -188756,7 +191738,7 @@ synonym: "membranous semicircular canal" RELATED [MA:0000251] xref: EMAPA:32830 xref: FMA:61122 xref: MA:0000251 -xref: MESH:D054776 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054776 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33528 xref: SCTID:279833009 xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"} @@ -188883,7 +191865,7 @@ xref: EHDAA:4706 xref: EMAPA:17286 xref: FMA:61255 xref: MA:0000245 -xref: MESH:D014722 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D014722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33871 xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"} xref: Wikipedia:Inner_ear @@ -188901,7 +191883,7 @@ subset: uberon_slim xref: EMAPA:35753 xref: FMA:61269 xref: MA:0001206 -xref: MESH:D054738 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054738 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:362578000 xref: Wikipedia:Scala_vestibuli is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel @@ -189079,7 +192061,7 @@ xref: EMAPA:35357 xref: FMA:242199 xref: GAID:674 xref: MA:0000905 -xref: MESH:D005625 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005625 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLXANAT:20090601 xref: Wikipedia:Frontal_lobe is_a: UBERON:0016529 ! cortex of cerebral lobe @@ -190141,11 +193123,11 @@ relationship: develops_from UBERON:0010092 ! future metencephalon relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio relationship: immediate_transformation_of UBERON:0010092 {evidence="definitional"} ! future metencephalon relationship: part_of UBERON:0002028 ! hindbrain +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/EmbryonicBrain.svg" xsd:anyURI property_value: external_definition "Anterior part of the hindbrain ventral to the cerebellum[BIRNLEX:965]." xsd:string {source="BIRNLEX:965"} property_value: external_definition "The anterior of two brain vesicles formed by specialization of the rhombencephalon in the developing embryo. It gives rise to cerebellum and pons. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/metencephalon"} property_value: homology_notes "The early development of most vertebrate brains is similar (...). The zebrafish neural tube follows the same basic differentiation pattern as the mammalian neural tube (reference 1); The brain develops from three embryonic enlargements of the neural tube, which later differentiate into five regions. A forebrain differentiates into telencephalon and diencephalon. The midbrain, or mesencephalon, remains undivided. The hindbrain divides into the metencephalon and myelencephalon. Cavities within the brain enlarge to form a series of interconnected ventricles (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000741", ontology="VHOG", source="ISBN:978-0878932504 Gilbert SF, Developmental Biology (2006) p.381-382, ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.500", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0001896 @@ -190316,8 +193298,16 @@ relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} ! Hyp relationship: present_in_taxon NCBITaxon:7742 ! Vertebrata relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/LocationOfHypothalamus.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000032", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Part of the diencephalon ventral to the thalamus consisting of connecting fibers and is a center for control of the autonomous nervous system.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010484", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "hypothalamic" xsd:string @@ -190644,8 +193634,14 @@ relationship: present_in_taxon NCBITaxon:117569 {source="Hardisty, p. 310"} ! Hy relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: axiom_lost_from_external_ontology "relationship loss: part_of pineal complex (TAO:0001359)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO"} property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6b/Illu_pituitary_pineal_glands.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000019", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Anatomical structure which is a medial outgrowth of the thalamus on the dorsal surface of the brain. This structure is light sensitive and secretes melatonin when exposed to prolonged darkness.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010549", ontology="AAO", source="AAO:BJB"} property_value: has_relational_adjective "epiphyseal" xsd:string @@ -190725,7 +193721,7 @@ xref: FMA:62038 xref: HBA:4507 xref: MA:0000878 xref: MBA:797 -xref: MESH:D065820 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065820 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:438 xref: SCTID:369186007 xref: Wikipedia:Zona_incerta @@ -190781,8 +193777,14 @@ relationship: part_of UBERON:0002104 ! visual system relationship: part_of UBERON:0003931 ! diencephalic white matter relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f6/Gray773.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: editor_note "relationships need checking by expert. NIF and ZFA both state part of diencepahalon; MA says part of optic nerve II. in uberon, CNS and PNS are spatially disjoint, and axon tracts are part of the CNS so we make the relationship to CNII 'continuous_with'" xsd:string [Term] @@ -191577,7 +194579,7 @@ synonym: "nucleus preopticus lateralis" RELATED OMO:0003011 [NeuroNames:381] xref: BAMS:LPO xref: BIRNLEX:1722 xref: BM:Die-Hy-LPO -xref: BTO:0006166 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10471 xref: EMAPA:35483 xref: FMA:62326 @@ -192011,7 +195013,7 @@ xref: FMA:62393 xref: HBA:9002 xref: MA:0000212 xref: MAT:0000452 -xref: MESH:D013681 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013681 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:491 {source="BIRNLEX:1200"} xref: SCTID:362392007 xref: TAO:0000160 @@ -192057,7 +195059,7 @@ xref: FMA:62402 xref: HBA:9079 xref: MA:0001062 xref: MBA:1100 -xref: MESH:D066250 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066250 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:467 {source="BIRNLEX:703"} xref: NLX:59721 xref: SCTID:416333003 @@ -192084,11 +195086,11 @@ relationship: overlaps UBERON:0001891 ! midbrain relationship: overlaps UBERON:0001894 ! diencephalon relationship: part_of UBERON:0000955 ! brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "A narrow, transversely oriented rostral zone of the mesencephalic tectum, bounded caudally by the superior colliculus, rostrally by the habenular trigone, and laterally by the pulvinar thalami; the pretectal area contains several nuclei that receive fibers from the optic tract; it has bilateral efferent connections with the Edinger-Westphal nucleus of the oculomotor nuclear complex by way of which it mediates the pupillary light refle[MP:0009637]x" xsd:string {source="MP:0009637"} property_value: external_definition "Region of brain lying between the midbrain tectum and the thalamus (Sefton and Dreher, in Paxinos, G The rat central nervous system, 1995, pg 859), Situated at the level of poterior commissure and just rostral to the superior colliculus (Brodal, Neurological Anatomy, 3rd ed, 1981, pg 542)" xsd:string {source="NLX:59721"} property_value: external_ontology_notes "part of diencephalon in ZFA - modify to adjacent here, supported by pub. Note there is some inconsistency in resources between the region vs nuclei - sometimes they are treated equivalent, sometimes separate (e.g. MP)" xsd:string {external_ontology="ZFA"} property_value: function_notes "It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "in monotremes, undifferentiated and possesses only a single nucleus[ISBN:0471888893]" xsd:string property_value: taxon_notes "teleost fishes exhibit hypertrophy of the pretectum[ISBN:0471888893]" xsd:string property_value: taxon_notes "within the amniotes, this region is smaller in mammals[ISBN:0471888893]" xsd:string @@ -192154,8 +195156,14 @@ relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: part_of UBERON:0002314 ! midbrain tectum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "The brain structure where the two separate inputs from the two eyes are combined into a single, integrated map.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010609", ontology="AAO", source="PMID:17952453"} property_value: external_definition "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000445", ontology="TAO", source="ZFIN:curator"} property_value: taxon_notes "The tectum is a layered structure, with a number of layers that vary by species. The superficial layers are sensory-related, and receive input from the eyes as well as other sensory systems.[1] The optic tectum is one of the fundamental components of the vertebrate brain, existing across the full range of species from hagfish to human.[4] (See the brain article for background.) Some aspects of the structure are very consistent, including a structure composed of a number of layers, with a dense input from the optic nerve to the superficial layers and another strong input conveying somatosensory input to deeper layers. Other aspects are highly variable, such as the total number of layers (from 3 in the African lungfish to 15 in the goldfish[5]), and the number of different types of cells (from 2 in the lungfish to 27 in the house sparrow[5]" xsd:string @@ -192201,8 +195209,14 @@ relationship: part_of UBERON:0002259 ! corpora quadrigemina relationship: part_of UBERON:0002314 ! midbrain tectum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/26/Gray711.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0001947 @@ -192222,7 +195236,7 @@ xref: BAMS:R xref: BAMS:RN xref: BIRNLEX:1478 xref: BM:MB-RN -xref: BTO:0006329 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006329 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12247 xref: EHDAA2:0004706 xref: EMAPA:35724 @@ -192257,8 +195271,14 @@ relationship: only_in_taxon NCBITaxon:7776 {source="ISBN:0471888893"} ! Gnathost relationship: part_of UBERON:0001943 {source="FMA"} ! midbrain tegmentum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/da/Cn3nucleus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: function_notes "in animals without a significant corticospinal tract, gait is mainly controlled by the red nucleus." xsd:string [Term] @@ -192714,6 +195734,7 @@ relationship: part_of UBERON:0002185 ! bronchus id: UBERON:0001964 name: least splanchnic nerve def: "A thoracic nerve that nerve travels into the abdomen, where its fibers synapse in the renal ganglia." [Wikipedia:Thoracic_splanchnic_nerves#cite_note-4] +subset: human_reference_atlas subset: organ_slim subset: uberon_slim synonym: "least thoracic splanchnic nerve" EXACT [FMA:6283] @@ -192730,6 +195751,7 @@ xref: SCTID:280506004 xref: Wikipedia:Thoracic_splanchnic_nerves#cite_note-4 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve relationship: connected_to UBERON:0018676 ! renal nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: external_ontology_notes "in MA this is part of the kidney but this leads to unsatisfiability" xsd:string {external_ontology="MA"} @@ -192762,7 +195784,7 @@ xref: FMA:62907 xref: HBA:9074 xref: MA:0001064 xref: MBA:374 -xref: MESH:D065842 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065842 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C97341 xref: neuronames:537 {source="BIRNLEX:990"} xref: UMLS:C0175412 {source="BIRNLEX:990", source="ncithesaurus:Pars_Compacta"} @@ -192807,7 +195829,7 @@ xref: FMA:62908 xref: HBA:9075 xref: MA:0001066 xref: MBA:381 -xref: MESH:D065841 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065841 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:537 {source="BIRNLEX:968"} xref: UMLS:C0175413 {source="BIRNLEX:968"} xref: Wikipedia:Pars_reticulata @@ -193107,7 +196129,7 @@ xref: EHDAA2:0004728 xref: EMAPA:35770 xref: FMA:63083 xref: MA:0002502 -xref: MESH:D044967 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D044967 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13325 xref: UMLS:C0229671 {source="ncithesaurus:Serum"} xref: Wikipedia:Serum_(blood) @@ -193455,7 +196477,8 @@ relationship: part_of UBERON:0016887 ! entire extraembryonic component relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/66/Placenta.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f1/Placenta.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI property_value: has_relational_adjective "placental" xsd:string property_value: homology_notes "Phylogenetic analyses of the concatenated data set using maximum parsimony, maximum likelihood and distance based (neighbour joining) methods all converged on a nearly identical, well supported topology defining four principal eutherian lineages. The results affirm monophyly of traditional placental orders (except Artiodactyla and Insectivora), and also support some previously proposed, as well as new, superordinal clades.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001266", ontology="VHOG", source="DOI:10.1038/35054550 Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ, Molecular phylogenetics and the origins of placental mammals. Nature (2001)", source="http://bgee.unil.ch/"} property_value: taxon_notes "Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN:0073040584 (Vertebrates, Kardong)]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: DOI:10.1002/jmor.11011" xsd:string @@ -193689,7 +196712,7 @@ synonym: "stratified cartilage tissue" EXACT [http://orcid.org/0000-0002-6601-21 xref: FMA:64784 xref: galen:Fibrocartilage xref: MA:0000108 -xref: MESH:D051445 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D051445 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32599 xref: SCTID:91685003 xref: UMLS:C0684077 {source="ncithesaurus:Fibrocartilage"} @@ -194020,8 +197043,16 @@ relationship: has_part UBERON:0009744 ! lymph node medullary sinus relationship: has_part UBERON:0009745 ! lymph node medullary cord relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0002008 @@ -194164,8 +197195,14 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0008886 ! pulmonary vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: supplies UBERON:0002048 ! lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: external_definition "Major artery which supplies blood to the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010221", ontology="AAO", source="AAO:BJB"} property_value: external_definition "One of two arteries, leaving from the heart, the left one supplying the left lung and the right one supplying the right lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000982", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+artery"} @@ -194176,6 +197213,7 @@ property_value: taxon_notes "In the human heart, the pulmonary trunk (pulmonary id: UBERON:0002013 name: superior hypogastric nerve plexus def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus] +subset: human_reference_atlas subset: uberon_slim synonym: "hypogastric plexus" RELATED [] synonym: "nervus presacralis" EXACT OMO:0003011 [FMA:6642, FMA:TA] @@ -194191,6 +197229,7 @@ xref: Wikipedia:Superior_hypogastric_plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: adjacent_to UBERON:0001075 ! bony vertebral centrum relationship: overlaps UBERON:0005303 ! hypogastric nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: editor_note "check relationship with generic hypogastric nerve/plexus" xsd:string @@ -194198,6 +197237,7 @@ property_value: editor_note "check relationship with generic hypogastric nerve/p id: UBERON:0002014 name: inferior hypogastric nerve plexus def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus] +subset: human_reference_atlas subset: uberon_slim synonym: "inferior hypogastric plexus" EXACT [] synonym: "pelvic nerve plexus" EXACT [] @@ -194216,6 +197256,7 @@ xref: UMLS:C0205797 {source="ncithesaurus:Inferior_Hypogastric_Nerve_Plexus"} xref: Wikipedia:Inferior_hypogastric_plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: overlaps UBERON:0005303 ! hypogastric nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/77/Gray838.png" xsd:anyURI property_value: editor_note "check relationship with generic hypogastric nerve/plexus" xsd:string @@ -194246,10 +197287,22 @@ relationship: bounding_layer_of UBERON:0002113 ! kidney relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/69/Illu_kidney.jpg" xsd:anyURI property_value: function_notes "provides some protection from trauma and damage." xsd:string property_value: structure_notes "The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly).[Wikipedia:Kidney_capsule]" xsd:string @@ -194291,8 +197344,14 @@ relationship: fma_set_term FMA:70827 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0008886 ! pulmonary vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: external_definition "Any of the veins which collect blood from the lungs and some small vesicles received from the esophagus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010521", ontology="AAO", source="AAO:BJB"} property_value: external_definition "One of two pairs of large vessels that return oxygenated blood from each lung to the left atrium of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001133", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+vein"} @@ -194403,7 +197462,6 @@ xref: EMAPA:17265 xref: FMA:6720 xref: FMA:80284 xref: GAID:825 -xref: HBA:9340 xref: MA:0001088 xref: MBA:717 xref: MESH:D000055 @@ -194455,7 +197513,7 @@ xref: EMAPA:37596 {source="MA:th"} xref: FMA:67242 xref: HBA:4006 xref: MA:0001112 -xref: MESH:D066128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32695 xref: neuronames:2869 xref: TAO:0002197 @@ -194598,6 +197656,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/91/Te id: UBERON:0002024 name: internal carotid nerve plexus def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus] +subset: human_reference_atlas subset: uberon_slim synonym: "internal carotid plexus" EXACT [] synonym: "plexus caroticus internus" EXACT OMO:0003011 [FMA:67533, FMA:TA] @@ -194609,6 +197668,7 @@ xref: SCTID:280509006 xref: UMLS:C0459526 {source="ncithesaurus:Internal_Carotid_Nerve_Plexus"} xref: Wikipedia:Internal_carotid_nerve_plexus is_a: UBERON:0001816 ! autonomic nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a5/Gray840.png" xsd:anyURI [Term] @@ -195005,7 +198065,7 @@ synonym: "nucleus praeopticus medialis" RELATED OMO:0003011 [NeuroNames:380] synonym: "nucleus preopticus medialis" RELATED OMO:0003011 [NeuroNames:380] xref: BAMS:MPO xref: BIRNLEX:706 -xref: BTO:0006167 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006167 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10470 xref: DMBA:15604 xref: EMAPA:35549 @@ -195162,8 +198222,14 @@ relationship: part_of UBERON:0001891 {source="multiple"} ! midbrain relationship: part_of UBERON:0002420 {source="NIF"} ! basal ganglion relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Midbraincrosssection.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: editor_note "TODO - In BTO and NIF, part of basal ganglion which is part of telencephalon - but this is inconsistent with being part of midbrain, if these are spatially disjoint, as in ABA" xsd:string property_value: external_definition "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons[FMA][FMA:67947]." xsd:string {source="FMA:67947"} property_value: homology_notes "(...) the substantia nigra first appears in reptiles and is best developed in primates.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001573", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.336", source="http://bgee.unil.ch/"} @@ -195287,7 +198353,7 @@ xref: FMA:68462 xref: HBA:9457 xref: MA:0002980 xref: MBA:872 -xref: MESH:D065847 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065847 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:512 {source="BIRNLEX:982"} xref: TAO:0000366 xref: UMLS:C0175392 {source="BIRNLEX:982"} @@ -195504,8 +198570,15 @@ relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounded_by UBERON:0009778 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! pleural sac -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010567", ontology="AAO", source="AAO:SBH"} property_value: has_relational_adjective "pulmonary" xsd:string property_value: homology_notes "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata. (...) In actinopterygian fishes, apart from Cladistia, the ventral intestinal pocket migrates dorsally and becomes the swim-bladder, a mainly hydrostatical organ (reference 1); Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000310", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210, DOI:10.1371/journal.pone.0024019 Zheng W, Wang Z, Collins JE, Andrews RM, Stemple D, Gong Z, Comparative transcriptome analyses indicate molecular homology of zebrafish swimbladder and Mammalian lung. PLoS One (2011)", source="http://bgee.unil.ch/"} @@ -195531,6 +198604,13 @@ relationship: has_part UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0007798 ! vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/29/Circulatory_System_en.svg" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI property_value: editor_note "see also: vascular system. Consider merging?" xsd:string property_value: has_relational_adjective "vascular" xsd:string @@ -195551,7 +198631,7 @@ xref: BILA:0000034 xref: BTO:0000174 xref: CALOHA:TS-2110 xref: EFO:0000461 -xref: FBbt:00004208 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004208 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:69067 xref: GAID:407 xref: MESH:D004628 @@ -195874,7 +198954,7 @@ xref: EHDAA:2586 xref: EMAPA:16696 xref: FMA:70302 xref: MA:0000078 -xref: MESH:D054089 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054089 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001317 xref: VHOG:0000932 xref: Wikipedia:Atrioventricular_cushions @@ -196036,7 +199116,8 @@ relationship: located_in UBERON:0003422 ! mesenchyme of umbilical cord relationship: overlaps UBERON:0002331 {source="cjm"} ! umbilical cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Gray502.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI [Term] id: UBERON:0002067 @@ -196216,7 +199297,7 @@ xref: BTO:0001314 xref: CALOHA:TS-2366 xref: EMAPA:37505 {source="MA:th"} xref: FMA:70544 -xref: MESH:D040521 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D040521 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33645 xref: TAO:0001136 xref: UMLS:C0278403 {source="ncithesaurus:Subcutis"} @@ -196401,8 +199482,14 @@ relationship: in_right_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava.[FMA]" xsd:string {source="FMA:7096"} property_value: homology_notes "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000328", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -196442,8 +199529,14 @@ relationship: in_left_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" xsd:string {source="FMA:7097"} property_value: external_definition "The chamber of the heart that receives blood from the lungs[XAO:EJS]." xsd:string {source="XAO:EJS"} property_value: homology_notes "The tetrapod clade develops a complete atrial septum and loses the fifth aortic arch altogether.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000369", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.620", source="http://bgee.unil.ch/"} @@ -196484,8 +199577,14 @@ relationship: in_right_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "The muscular chamber on the right and in front of the left ventricle. It generally receives venous blood from the right atrium and conveys it into the pulmonary artery. [(1988)_Dorian_AF, Amsterdam, Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B._Anatomy, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier's_Encyclopaedic_Dictionary_of_Medicine][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000717", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI property_value: taxon_notes "In mammals continuous with the pulmonary arteries" xsd:string @@ -196636,8 +199735,14 @@ relationship: in_left_side_of UBERON:0000948 ! heart relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "Thick-walled muscular chamber constituting the left border and apex of the heart. It receives oxygenated blood from the left atrium through the mitral orifice and send it off into the aorta. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000718", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "The vertebrate heart initially forms as a tube from a population of precursor cells termed the first heart field (FHF). Cells from the adjacent second heart field (SHF) are then progressively added to the developing heart. In avian and mammalian hearts, the FHF contributes mainly to the left ventricle, whereas the SHF gives rise to the outflow tract and large portions of the right ventricle and atria. Both fields arise from common mesodermal progenitors, although the detailed lineage relationships between FHF and SHF remain uncertain.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000718", ontology="VHOG", source="DOI:10.1126/science.1190181 Stolfi A, Gainous TB, Young JJ, Mori A, Levine M, Christiaen L, Early chordate origins of the vertebrate second heart field. Science (2010)", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -196719,15 +199824,15 @@ relationship: connects UBERON:0002082 ! cardiac ventricle relationship: develops_from UBERON:0007279 ! presumptive atrioventricular canal relationship: immediate_transformation_of UBERON:0007279 {source="Bgee:AN"} ! presumptive atrioventricular canal relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/rfoulger property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d8/Gray464.png" xsd:anyURI property_value: development_notes "The right side of the AVC becomes the tricuspid valve whereas the left side of the AVC will become the bicuspid valve" xsd:string property_value: external_definition "The canal connecting the primitive atrium and ventricle in fishes and amniotes embryo. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001473", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/atrioventricular+canal"} property_value: external_ontology_notes "this is a lumen in EHDAA2" xsd:string {external_ontology="EHDAA2"} property_value: function_notes "In the embryo, the atrioventricular canal delays the impulse from atrium to ventricle[PMID:22984480]" xsd:string property_value: homology_notes "The heart is the first organ to form and function in a vertebrate. (...) Septation of the AV canal is initiated with the formation of inferior and superior endocardial cushions in response to signaling from the overlying myocardium. (...) Analysis of zebrafish mutants with cardiovascular defects uncovered a previously unexpected level of conservation between zebrafish and human cardiovascular physiology.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001473", ontology="VHOG", source="DOI:10.1016/j.ddmec.2004.08.004 Haramis APG, Clevers HC, Holehearted: genetic approaches to congenital cardiac valve malformations. Drug Discovery Today: Disease Mechanisms (2004)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/rfoulger [Term] id: UBERON:0002088 @@ -196783,7 +199888,7 @@ xref: EMAPA:37721 {source="MA:th"} xref: FMA:71221 xref: MA:0002986 xref: MAT:0000148 -xref: MESH:D013131 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013131 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000148 xref: TAO:0000317 xref: VHOG:0000317 @@ -196926,8 +200031,14 @@ relationship: adjacent_to UBERON:0002080 ! heart right ventricle relationship: adjacent_to UBERON:0002084 ! heart left ventricle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray498.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: development_notes "involves the recruitment of myocardial cells as well as of non- muscular mesenchymal cells (Kaufman and Bard, 1999)" xsd:string {source="ISBN:0124020607"} property_value: external_definition "The partition separating the right and left ventricles of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000386", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/interventricular+septum"} property_value: homology_notes "The two most progressive vertebrate classes, the birds and mammals, have completed the ventricular septum and at long last have completely separated the two blood streams along the length of the major heart chambers. This development has obviously been brought about independently in the two cases, since mammals and birds have evolved independently from primitive reptiles.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000386", ontology="VHOG", source="ISBN:978-0721676678 Romer AS, Vertebrate body (1970) p.430", source="http://bgee.unil.ch/"} @@ -196954,10 +200065,10 @@ xref: UMLS:C0025474 {source="ncithesaurus:Mesentery"} xref: Wikipedia:Mesentery#Mesentery_.28general.29 is_a: UBERON:0000042 ! serous membrane relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/19/Gray1038.png" xsd:anyURI property_value: external_ontology_notes "in Uberon, this term is used in the generic sense, not necessarily restricted to the peritoneum, consistent with FMA. WP: 'In anatomy, the mesentery is the double layer of peritoneum that suspends the jejunum and ileum from the posterior wall of the abdomen. Its meaning, however, is frequently extended to include double layers of peritoneum connecting various components of the abdominal cavity.'. TODO - check. Consider FMA:259286 - Region of mesentery." xsd:string {external_ontology="FMA"} property_value: has_relational_adjective "mesenteric" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0002097 @@ -196997,10 +200108,15 @@ relationship: part_of UBERON:0002199 ! integument relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "consider 'integumentary system' for invertebrates" xsd:string property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Skin.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Skin.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_M_Skin.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Skin.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.0/assets/VH_F_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.1/assets/VH_F_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.2/assets/VH_F_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.3/assets/3d-vh-f-skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-female/v1.4/assets/3d-vh-f-skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.0/assets/VH_M_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.1/assets/VH_M_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.2/assets/VH_M_Skin.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/skin-male/v1.3/assets/3d-vh-m-skin.glb" xsd:anyURI property_value: external_ontology_notes "MA uses the term skin to refer to what is called here: zone of skin" xsd:string {external_ontology="FMA"} [Term] @@ -197121,7 +200237,7 @@ xref: GAID:36 xref: galen:Extremity xref: MA:0000007 xref: MAT:0000090 -xref: MESH:D005121 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005121 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000090 xref: NCIT:C12429 xref: SCTID:243996003 @@ -197350,9 +200466,14 @@ relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002390 {source="FMA", source="MA"} ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Spleen.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spleen.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.0/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.1/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.2/assets/VH_F_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-female/v1.3/assets/3d-vh-f-spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.0/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.1/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.2/assets/VH_M_Spleen.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spleen-male/v1.3/assets/3d-vh-m-spleen.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d6/Illu_spleen.jpg" xsd:anyURI property_value: external_definition "An organ involved in red blood cell filtration and immune response.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010395", ontology="AAO", source="AAO:BMZ"} property_value: function_notes "It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells" xsd:string @@ -197421,8 +200542,12 @@ relationship: site_of GO:0002384 ! hepatic immune response relationship: site_of GO:0005978 ! glycogen biosynthetic process relationship: site_of GO:0005980 ! glycogen catabolic process property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010111", ontology="AAO"} -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/64/Leber_Schaf.jpg" xsd:anyURI property_value: external_definition "Organ which secretes bile and participates in formation of certain blood proteins.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010111", ontology="AAO", source="AAO:BJB"} property_value: external_ontology_notes "Only ZFA considers this part_of immune system - we weaken this to an overlaps relation, as in general it's only a subset of cells that have clear immune function." xsd:string {external_ontology="ZFA"} @@ -197476,8 +200601,11 @@ relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000160 ! intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/82/Stomach_colon_rectum_diagram.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.2/assets/3d-vh-f-small-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb" xsd:anyURI property_value: external_definition "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001323", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "Intestinal surface area also is increased in amphibians and reptiles by internal folds and occasionally by a few villi. The intestine can be divided into a small intestine and a slightly wider large intestine.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000055", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.566", source="http://bgee.unil.ch/"} @@ -197700,8 +200828,11 @@ relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximalmost_part_of UBERON:0002108 ! small intestine property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Tractus_intestinalis_duodenum.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.2/assets/3d-vh-f-small-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb" xsd:anyURI property_value: external_definition "The fixed portion of the small intestine deeply lodged in the posterior wall of the abdomen and extending from the pylorus to the beginning of the jejunum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000052", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "duodenal" xsd:string property_value: taxon_notes "In fish, the divisions of the small intestine are not as clear, and the terms anterior intestine or proximal intestine may be used instead of duodenum." xsd:string {scope="NCBITaxon:32443", source="Wikipedia:Duodenum"} @@ -197741,8 +200872,11 @@ relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.2/assets/3d-vh-f-small-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb" xsd:anyURI property_value: editor_note "TODO consider ZFA:0001323 mid intestine, see also small intestine" xsd:string property_value: external_definition "The first two fifth of the small intestine beyond the duodenum. It extends from the end of the duodenum to the ileum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000053", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "jejunal" xsd:string @@ -197784,8 +200918,11 @@ relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3d/Illu_small_intestine.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.2/assets/3d-vh-f-small-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb" xsd:anyURI property_value: editor_note "TODO consider ZFA:0000706 posterior intestine, see also colon" xsd:string property_value: has_relational_adjective "ileal" xsd:string property_value: homology_notes "Although all vertebrates have a digestive tract and accessory glands, various parts of this system are not necessarily homologous, analogous, or even present in all species. Therefore, broad comparisons can be best made under the listings of headgut, foregut, midgut, pancreas and biliary system, hindgut.[uncertain][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000647", ontology="VHOG", source="ISBN:978-0521617147 Stevens CE and Hume ID, Comparative physiology of the vertebrate digestive system (2004) p.11", source="http://bgee.unil.ch/"} @@ -197847,7 +200984,7 @@ xref: EHDAA:1017 xref: EMAPA:16579 xref: FMA:72170 xref: MAT:0000117 -xref: MESH:D060910 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060910 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000117 xref: NCIT:C34280 xref: SCTID:308804007 @@ -198073,7 +201210,7 @@ xref: FMA:72247 xref: HBA:9177 xref: MA:0001026 xref: MBA:398 -xref: MESH:D065832 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065832 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:569 {source="BIRNLEX:1307"} xref: UMLS:C0175427 {source="BIRNLEX:1307"} xref: VHOG:0001381 @@ -198311,8 +201448,14 @@ relationship: connects UBERON:0002080 ! heart right ventricle relationship: part_of UBERON:0005965 ! outflow part of right atrium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "The three-segmented valve of the heart that keeps blood in the right ventricle from flowing back into the right atrium. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000816", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/Tricuspid+valves"} property_value: external_ontology_notes "FMA part_ofs changed to connects" xsd:string {external_ontology="FMA"} property_value: homology_notes "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000816", ontology="VHOG", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)", source="http://bgee.unil.ch/"} @@ -198352,8 +201495,14 @@ relationship: connects UBERON:0002084 {source="FMA"} ! heart left ventricle relationship: part_of UBERON:0005966 ! outflow part of left atrium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "A valve of the heart, composed of two triangular flaps, that is located between the left atrium and left ventricle and regulates blood flow between these chambers. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000817", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/mitral+valve"} property_value: external_ontology_notes "FMA part_ofs changed to connects" xsd:string {external_ontology="FMA"} property_value: homology_notes "The mature AV (atrioventricular) valve of the adult zebrafish 2-chambered heart is structurally similar to the mammalian AV valves with stratified ECM (extracellular matrix) and supporting chordae tendineae. Therefore, the major cellular and molecular events of valve development are largely conserved among animals with hearts composed of multiple chambers.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000817", ontology="VHOG", source="DOI:10.1161/CIRCRESAHA.109.201566 Combs MD, Yutzey KE, Heart valve development. Circulatory Research (2009)", source="http://bgee.unil.ch/"} @@ -198411,8 +201560,14 @@ is_a: UBERON:0005623 {source="MA"} ! semi-lunar valve relationship: part_of UBERON:0005956 ! outflow part of left ventricle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "The valve between the left ventricle of the heart and the ascending aorta, consisting of three semilunar cusps. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000815", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/aortic+valve"} [Term] @@ -198552,7 +201707,7 @@ xref: FMA:72424 xref: HBA:9449 xref: MA:0001071 xref: MBA:975 -xref: MESH:D065839 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065839 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:498 {source="BIRNLEX:822"} xref: SCTID:62088007 xref: TAO:0000244 @@ -198598,7 +201753,7 @@ xref: FMA:72429 xref: HBA:9021 xref: MA:0001020 xref: MBA:1052 -xref: MESH:D045042 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D045042 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:504 {source="BIRNLEX:1437"} xref: UMLS:C0262306 {source="BIRNLEX:1437"} xref: Wikipedia:Pedunculopontine_tegmental_nucleus @@ -198711,7 +201866,7 @@ xref: FMA:72439 xref: HBA:9012 xref: MA:0001069 xref: MBA:100 -xref: MESH:D066268 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066268 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:522 {source="BIRNLEX:1000"} xref: SCTID:369240002 xref: TAO:0000903 @@ -198753,8 +201908,14 @@ relationship: connects UBERON:0002012 ! pulmonary artery relationship: connects UBERON:0002082 ! cardiac ventricle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Diagram_of_the_human_heart_%28cropped%29.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: external_definition "The valve with semilunar cusps at the entrance to the pulmonary trunk from the right ventricle of the heart. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000814", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+valve"} [Term] @@ -198975,8 +202136,14 @@ relationship: mutually_spatially_disjoint_with UBERON:0007632 {source="ABA"} ! B relationship: part_of UBERON:0002567 ! basal part of pons relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dc/Lower_pons_horizontal_KB.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002152 @@ -199003,7 +202170,7 @@ xref: FMA:72515 xref: HBA:9294 xref: MA:0002745 xref: MBA:78 -xref: MESH:D065837 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065837 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:620 {source="BIRNLEX:1529"} xref: NIFSTD_RETIRED:birnlex_1699 xref: SCTID:279219000 @@ -199152,7 +202319,7 @@ xref: FMA:72584 xref: HBA:9643 xref: MA:0001024 xref: MBA:206 -xref: MESH:D065846 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065846 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:739 {source="BIRNLEX:1363"} xref: UMLS:C0175515 {source="BIRNLEX:1363"} xref: Wikipedia:Nucleus_raphe_magnus @@ -199182,7 +202349,7 @@ xref: FMA:72586 xref: HBA:9649 xref: MA:0001051 xref: MBA:230 -xref: MESH:D065848 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065848 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:741 {source="BIRNLEX:1375"} xref: UMLS:C0175517 {source="BIRNLEX:1375"} xref: Wikipedia:Nucleus_raphe_pallidus @@ -199500,8 +202667,14 @@ intersection_of: UBERON:0002048 ! lung intersection_of: in_right_side_of UBERON:0000170 ! pair of lungs relationship: in_right_side_of UBERON:0000170 ! pair of lungs property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: homology_notes "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000301", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -199526,8 +202699,14 @@ intersection_of: UBERON:0002048 ! lung intersection_of: in_left_side_of UBERON:0000170 ! pair of lungs relationship: in_left_side_of UBERON:0000170 ! pair of lungs property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/dd/Gray973.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: homology_notes "Lungs had already developed as paired ventral pockets from the intestine in the ancestor of Osteognathostomata.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000618", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.210", source="http://bgee.unil.ch/"} property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI @@ -199589,8 +202768,14 @@ intersection_of: UBERON:0008948 ! upper lobe of lung intersection_of: part_of UBERON:0002167 ! right lung relationship: contributes_to_morphology_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002171 @@ -199622,8 +202807,14 @@ intersection_of: UBERON:0008949 ! lower lobe of lung intersection_of: part_of UBERON:0002167 ! right lung relationship: contributes_to_morphology_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002172 @@ -199696,8 +202887,14 @@ intersection_of: part_of UBERON:0002167 ! right lung relationship: contributes_to_morphology_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/32/Gray972.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002175 @@ -199755,8 +202952,14 @@ intersection_of: continuous_with UBERON:0006518 ! right lung lobe relationship: continuous_with UBERON:0006518 ! right lung lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.1/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.1/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI property_value: taxon_notes "Divides into 3 lobar bronchi in humans" xsd:string {source="ISBN:0123813611"} [Term] @@ -199783,8 +202986,14 @@ intersection_of: continuous_with UBERON:0008951 ! left lung lobe relationship: continuous_with UBERON:0008951 ! left lung lobe property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.1/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.1/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI property_value: taxon_notes "Divides into 2 lobar bronchi in humans" xsd:string {source="ISBN:0123813611"} [Term] @@ -199896,8 +203105,10 @@ relationship: distally_connected_to UBERON:0002183 ! lobar bronchus relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0003126 ! trachea -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-main-bronchus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.0/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-female/v1.1/assets/3d-vh-f-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.0/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/main-bronchus-male/v1.1/assets/3d-vh-m-main-bronchus.glb" xsd:anyURI property_value: taxon_notes "In humans, histologically identical to trachea." xsd:string [Term] @@ -199971,8 +203182,14 @@ relationship: part_of UBERON:0000101 {source="FMA"} ! lobe of lung relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0002183 ! lobar bronchus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/df/Illu_quiz_lung05.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0002185 @@ -200009,8 +203226,15 @@ relationship: never_in_taxon NCBITaxon:8507 {source="Wikipedia"} ! Sphenodon relationship: part_of UBERON:0007196 ! tracheobronchial tree relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "Each of the two primary divisions of the trachea leading respectively into the right and the left lung. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000262", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "bronchial" xsd:string property_value: taxon_notes "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue" xsd:string @@ -200033,7 +203257,7 @@ xref: EHDAA:8221 xref: EMAPA:32697 xref: FMA:7410 xref: MA:0000422 -xref: MESH:D055745 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055745 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12684 xref: SCTID:278982001 xref: UMLS:C0006270 {source="ncithesaurus:Bronchiole"} @@ -200111,10 +203335,22 @@ xref: FMA:74285 xref: MA:0001649 is_a: UBERON:0001225 ! cortex of kidney relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI [Term] id: UBERON:0002190 @@ -200135,7 +203371,7 @@ xref: BTO:0004042 xref: EMAPA:35829 xref: FMA:74315 xref: MA:0000473 -xref: MESH:D015434 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D015434 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0001013 ! adipose tissue is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001013 ! adipose tissue @@ -200261,8 +203497,16 @@ relationship: bounding_layer_of UBERON:0000029 ! lymph node relationship: composed_primarily_of UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/92/Lymphknoten_(Schwein).jpg" xsd:anyURI property_value: taxon_notes "from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]" xsd:string @@ -200606,8 +203850,10 @@ intersection_of: part_of UBERON:0000019 ! camera-type eye relationship: develops_from UBERON:0003314 {source="ISBN:0781772214"} ! eye mesenchyme relationship: part_of UBERON:0000019 ! camera-type eye relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: external_ontology_notes "not part of the eye in ZFA. Note this changed to a blood vessel in ZFA" xsd:string {external_ontology="ZFA"} [Term] @@ -200645,10 +203891,10 @@ relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_developmental_contribution_from UBERON:0000926 {notes="check ctenophore"} ! mesoderm relationship: has_part UBERON:0000383 ! musculature of body relationship: has_part UBERON:0001434 ! skeletal system +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Anatomical system that provides locomotion and physical support to the organism.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010546", ontology="AAO", source="AAO:EJS"} property_value: has_relational_adjective "musculoskeletal" xsd:string property_value: homology_notes "There are more than 50,000 extant vertebrate species, representing over 500 million years of evolution. During that time, the vertebrate musculoskeletal systems have adapted to aquatic, terrestrial, fossorial, and arboreal lifestyles, while simultaneously retaining functionally integrated axial and appendicular skeletal systems.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001275", ontology="VHOG", source="DOI:10.1002/jez.b.21246 Shearman RM, Burke AC, The lateral somitic frontier in ontogeny and phylogeny. Journal of Experimental Zoology (2009)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0002205 @@ -200752,7 +203998,7 @@ synonym: "xyphoid" RELATED [Wikipedia:Xiphoid_process] xref: EMAPA:18725 xref: FMA:7488 xref: MA:0001334 -xref: MESH:D014989 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D014989 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33895 xref: SCTID:272711000 xref: UMLS:C0043356 {source="ncithesaurus:Xiphoid_Process"} @@ -200821,6 +204067,7 @@ is_a: UBERON:0002213 ! cartilaginous joint id: UBERON:0002211 name: nerve root def: "A continuation of the neuron projection bundle component of a nerve inside, crossing or immediately outside the central nervous system." [http://orcid.org/0000-0002-6601-2165, https://github.com/obophenotype/uberon/issues/286] +subset: human_reference_atlas subset: uberon_slim synonym: "initial segment of nerve" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "radix nervi" EXACT OMO:0003011 [] @@ -200836,6 +204083,7 @@ relationship: extends_fibers_into UBERON:0001017 ! central nervous system relationship: extends_fibers_into UBERON:0001021 ! nerve relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001016 {comment="EDITOR_NOTE we do not commit to CNS or PNS to allow for flexibility with this class"} ! nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: editor_note "We consider cranial nerve roots to be primarily CNS structures, but model spinal nerve roots as PNS structures, due to the existence of ganglia on the roots." xsd:string property_value: external_definition "The continuation of the neurite bundle and associated glia of a nerve, inside the central nervous system[FBbt:00007602, FBC:DOS]." xsd:string {source="FBbt:00007602, FBC:DOS"} property_value: external_ontology_notes "FMA has 'central zone of nerve' which is the superclass of cranial nerve tracts, which the FMA sometimes calls roots" xsd:string {external_ontology="FMA"} @@ -201036,7 +204284,7 @@ def: "Group of neurons situated on the ventral surface of the fornix at the leve subset: uberon_slim synonym: "organum subfornicale" RELATED OMO:0003011 [Wikipedia:Subfornical_organ] xref: BAMS:SFO -xref: BTO:0006266 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006266 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12104 xref: EMAPA:35830 xref: FMA:75260 @@ -201109,9 +204357,9 @@ xref: ZFA:0001634 is_a: UBERON:0002384 {source="VSAO"} ! connective tissue relationship: bounding_layer_of UBERON:0007844 ! cartilage element relationship: part_of UBERON:0007844 ! cartilage element +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: external_definition "Portion of connective tissue which surrounds cartilage.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001643", ontology="TAO", source="TAO:wd"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002223 @@ -201292,7 +204540,7 @@ xref: SCTID:302523002 xref: TAO:0000538 xref: UMLS:C0035561 {source="ncithesaurus:Rib"} xref: VHOG:0001154 -xref: VO:0012403 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0012403 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Rib xref: ZFA:0000538 is_a: UBERON:0002513 ! endochondral bone @@ -201489,7 +204737,7 @@ xref: BTO:0001721 xref: EMAPA:35262 xref: FMA:7591 xref: MA:0000106 -xref: MESH:D066186 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066186 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32391 xref: SCTID:244703004 xref: UMLS:C0222787 {source="ncithesaurus:Costal_Cartilage"} @@ -201617,8 +204865,10 @@ relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001137 ! dorsum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Spinal_cord_direv.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI property_value: editor_note "TODO - add superclass to unify with VNC?" xsd:string property_value: external_definition "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010151", ontology="AAO", source="AAO:BJB"} property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (4) a single, tubular nerve cord that is located dorsal to the notochord (...) (reference 1); The neural tube is destined to differentiate into the brain and spinal cord (the central nervous system) (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000601", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28, ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.165", source="http://bgee.unil.ch/"} @@ -201662,7 +204912,7 @@ xref: EMAPA:18008 xref: FMA:13550 xref: FMA:76703 xref: MA:0000112 -xref: MESH:D000070614 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000070614 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:316586000 xref: Wikipedia:Nucleus_pulposus is_a: UBERON:0000062 ! organ @@ -202157,6 +205407,7 @@ property_value: editor_note "this section needs worked on for pan-vertebrate con id: UBERON:0002260 name: ventral root of spinal cord def: "The ventral roots contain efferent motor axons. Similar to the dorsal roots, the ventral roots continue out from the spinal column, and meet and mix with their corresponding dorsal nerve root at a point after the ganglion." [NLXANAT:20090209] +subset: human_reference_atlas subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -202191,6 +205442,7 @@ xref: Wikipedia:Anterior_root_of_spinal_nerve xref: ZFA:0000705 is_a: UBERON:0009623 {different_relation_from="ZFA", source="FMA"} ! spinal nerve root relationship: contributes_to_morphology_of UBERON:0001780 ! spinal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI property_value: external_definition "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve[Wikipedia:Anterior_root_of_spinal_nerve]." xsd:string {source="Wikipedia:Anterior_root_of_spinal_nerve"} property_value: external_ontology_notes "FMA:77516 xref is a 'general anatomical term'. We xref both to ensure equivalence." xsd:string {external_ontology="FMA"} @@ -202243,7 +205495,7 @@ subset: human_reference_atlas subset: uberon_slim synonym: "coeliac ganglion" EXACT [FMA:77570] xref: BAMS:GCE -xref: BTO:0006296 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006296 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0000266 xref: EHDAA:8946 xref: EMAPA:19321 @@ -202339,8 +205591,16 @@ relationship: part_of UBERON:0005366 ! olfactory lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f9/1543,Vesalius%27OlfactoryBulbs.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: development_notes "the olfactory bulbs develop as bilateral evaginations from a region of the prosencephalic neural plate intercalated between the septal and the cortical anlagen (Cobos et al. 2001b, Rubenstein et al. 1998). Comparing the structure of the olfactory bulb among vertebrate species, such as the leopard frog and the lab mouse, reveals that they all share the same fundamental layout(WP)." xsd:string property_value: external_definition "Part of the rostral part of the cerebrum where axons of olfactory cells from the nasal mucosa terminate. Projects onto olfactory parts of pallium via olfactory tracts" xsd:string {source="ISBN:0471888893"} property_value: external_definition "Part of the telencephalon comprised of anterior outgrowths of either of the cerebral hemispheres in which the olfactory nerve exits.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010165", ontology="AAO", source="AAO:BJB"} @@ -202426,8 +205686,16 @@ relationship: mutually_spatially_disjoint_with UBERON:0002893 {source="ABA"} ! n relationship: mutually_spatially_disjoint_with UBERON:0004069 {source="ABA"} ! accessory olfactory bulb relationship: part_of UBERON:0002894 ! olfactory cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002267 @@ -202474,7 +205742,7 @@ synonym: "organum olfactorium" RELATED [BTO:0001772] synonym: "primary olfactory organ" NARROW [] xref: AAO:0010180 xref: BTO:0001772 -xref: FBbt:00005158 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005158 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:77659 xref: VHOG:0000287 xref: XAO:0000273 @@ -203254,7 +206522,7 @@ synonym: "cochlear duct" RELATED [] xref: EMAPA:35751 xref: FMA:79789 xref: MA:0002458 -xref: MESH:D003053 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D003053 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: Wikipedia:Scala_media is_a: UBERON:0011060 {source="MA"} ! perilymphatic channel is_a: UBERON:0013685 ! foramen of skull @@ -203783,7 +207051,7 @@ xref: EMAPA:35927 xref: FMA:83929 xref: HBA:9218 xref: MA:0001135 -xref: MESH:D066127 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066127 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33892 xref: neuronames:2870 xref: NLX:412 @@ -203963,7 +207231,7 @@ synonym: "ventral body cavity" NARROW [NCBITaxon:7742] xref: AEO:0000186 xref: BTO:0001707 xref: EHDAA2:0000267 -xref: FBbt:00005060 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005060 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:85006 xref: galen:BodyCavity xref: NCIT:C25444 @@ -204105,6 +207373,8 @@ relationship: part_of UBERON:0011137 ! axial skeletal system relationship: produces PR:000014841 ! sonic hedgehog protein relationship: ventral_to UBERON:0001049 ! neural tube property_value: axiom_lost_from_external_ontology "relationship type change: differentiates_from mesoderm (AAO:0000304) CHANGED TO: develops_from mesoderm (UBERON:0000926)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png" xsd:anyURI property_value: development_notes "In between vertebra the notochord becomes the nucleus pulposus, under it degenerates, and at anterior end in some species its tissue merges with some of the cranial bones.. Some organisms retain a post-embryonic notochord." xsd:string property_value: external_definition "Avascular multi-tissue structure composed of large vacuolated epithelial cells (chordablasts) and perichordal fibrous tissue.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000032", ontology="VSAO", source="PSPUB:0000170"} @@ -204112,8 +207382,6 @@ property_value: external_definition "Rod-like principal supportive element of th property_value: external_definition "Slender rod of fibrous connective tissue surrounding a core of fluid-filled cells of mesodermal origin; it lies above the gut and directly beneath the spinal cord. The notochord is present during early development and in a few cases it is retained through life; however, usually the notochord is replaced by the vertebral column.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000327", ontology="AAO", source="AAO:LAP"} property_value: has_relational_adjective "notochordal" xsd:string property_value: homology_notes "(...) at some stage of its development, every chordate exhibits five uniquely derived characters or synapomorphies of the group: (...) (3) a stiff, longitudinal rod of turgid cells along the dorsal part of the body that is called a notochord (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000199", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.28", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002329 @@ -204228,7 +207496,8 @@ relationship: connects UBERON:0001987 ! placenta relationship: develops_from UBERON:0007806 ! connecting stalk relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f3/Umbilicalcord.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI property_value: external_definition "The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta.property_value, external_definition the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." xsd:string {source="Wikipedia:Umbilical_cord"} property_value: has_relational_adjective "umbilical" xsd:string @@ -204258,8 +207527,14 @@ relationship: continuous_with UBERON:0002080 {gci_relation="part_of", gci_filler relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0008886 ! pulmonary vascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/db/Alveoli_diagram.png" xsd:anyURI property_value: external_definition "An arterial trunk with origin from the right ventricle of the heart, and dividing into the right and left pulmonary arteries, which enter the corresponding lungs and branch with the bronchi. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001134", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/pulmonary+trunk"} property_value: homology_notes "As in birds, the conus arteriosus split during embryonic development in mammals to produce the pulmonary trunk and single aortic trunk of the adult.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001134", ontology="VHOG", source="ISBN:978-0072528305 Kardong KV, Vertebrates: Comparative Anatomy, Function, Evolution (2006) p.481", source="http://bgee.unil.ch/"} @@ -204353,8 +207628,14 @@ relationship: never_in_taxon NCBITaxon:9255 {source="Wikipedia"} ! Monotremata relationship: only_in_taxon NCBITaxon:9347 {source="Wikipedia"} ! Eutheria relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "The largest commissure of the brain connecting the cerebral hemispheres. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001608", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/corpus+callosum"} property_value: homology_notes "In addition to the anterior commissure, placental mammals have a phylogenetically new forebrain commissure, the corpus callosum, which primarily interconnects the neocortex of the cerebral hemispheres.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001608", ontology="VHOG", source="DOI:10.1111/j.1749-6632.1969.tb20447.x Ebner FF, A comparison of primitive forebrain organization in metatherian and eutherian mammals. Annals of the New York Academy of Sciences (1969)", source="http://bgee.unil.ch/"} property_value: taxon_notes "The corpus callosum is found only in placental mammals. other groups do have other brain structures that allow for communication between the two hemispheres, such as the anterior commissure, which serves as the primary mode of interhemispheric communication in marsupials." xsd:string {source="Wikipedia:Corpus_callosum#Species_Differences"} @@ -204616,7 +207897,7 @@ xref: EHDAA:1498 xref: EHDAA:255 xref: EMAPA:16073 xref: EV:0100004 -xref: FBbt:00001057 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:87657 xref: MAT:0000176 xref: MIAA:0000176 @@ -205386,7 +208667,8 @@ relationship: develops_from UBERON:0003820 ! prostate bud relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Prostatelead.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: editor_note "TODO - FMA treats the gland as part of the prostate - see also FMA:74119." xsd:string property_value: has_relational_adjective "prostatic" xsd:string @@ -205523,9 +208805,14 @@ relationship: part_of UBERON:0000949 {source="XAO"} ! endocrine system relationship: part_of UBERON:0002390 {source="FMA", source="MA"} ! hematopoietic system relationship: part_of UBERON:0002405 {source="XAO"} ! immune system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.3/assets/3d-vh-f-thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.3/assets/3d-vh-m-thymus.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg" xsd:anyURI property_value: editor_note "check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland." xsd:string property_value: external_definition "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010548", ontology="AAO", source="AAO:BJB"} @@ -205586,7 +208873,6 @@ id: UBERON:0002372 name: tonsil def: "Either of the two small almond-shaped masses of lymph tissue found on either side of the oropharynx." [MGI:cwg, MP:0002380] subset: efo_slim -subset: human_reference_atlas subset: pheno_slim subset: uberon_slim synonym: "Mandel" RELATED [BTO:0001387] @@ -205612,7 +208898,6 @@ disjoint_from: UBERON:0005351 ! paraflocculus relationship: contributes_to_morphology_of UBERON:0001735 ! tonsillar ring relationship: located_in UBERON:0000167 ! oral cavity relationship: part_of UBERON:0001735 {source="cjm"} ! tonsillar ring -relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "the term 'tonsil' can be ambiguous, sometimes refering specifically to the palatine tonsil, sometimes generically to include the cecal tonsils of avians. This class represents lymphoid tissue that is part of the tonsillar ring, in the mouth/throat region" xsd:string [Term] @@ -205620,6 +208905,7 @@ id: UBERON:0002373 name: palatine tonsil def: "Tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil] subset: efo_slim +subset: human_reference_atlas subset: uberon_slim synonym: "faucial tonsil" EXACT [] synonym: "tonsil" BROAD [] @@ -205631,7 +208917,7 @@ xref: EV:0100393 xref: FMA:9610 xref: MA:0000775 xref: MAT:0000291 -xref: MESH:D014066 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D014066 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000291 xref: NCIT:C33250 xref: SCTID:265787001 @@ -205643,6 +208929,7 @@ is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0010023 {notes="the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract", source="ISBN:1607950324", source="MP:anna", source="PMID:20144910"} ! dorsal part of pharyngeal pouch 2 relationship: dubious_for_taxon NCBITaxon:9989 {source="PMID:20144910"} ! Rodentia relationship: has_developmental_contribution_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/f6/Illu_mouth.jpg" xsd:anyURI property_value: development_notes "tonsillar fossa develops from dorsal portion of pouch 2. Note that pharyngeal and lingual tonsils do not develop from pharyngeal pouches" xsd:string {source="ISBN:1607950324"} @@ -205706,14 +208993,16 @@ xref: Wikipedia:Cricoid_cartilage is_a: UBERON:0001739 {source="MA"} ! laryngeal cartilage relationship: composed_primarily_of UBERON:0001994 {source="Wikipedia"} ! hyaline cartilage tissue relationship: develops_from UBERON:0010214 {source="EHDAA2"} ! cricoid pre-cartilage condensation +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/54/Gray1194.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-larynx.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.0/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-female/v1.1/assets/3d-vh-f-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.0/assets/3d-vh-m-larynx.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/larynx-male/v1.1/assets/3d-vh-m-larynx.glb" xsd:anyURI property_value: external_definition "Cartilaginous ring that provides support for the arytenoid cartilages. Its ventral part is bent posteriorly to form a V.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000675", ontology="AAO", source="AAO:LAP"} property_value: external_definition "The ringlike cartilage forming the caudal part of the larynx. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001308", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/cricoid+cartilage"} property_value: homology_notes "(In anura) a dorsal pair of arytenoid cartilages (...), which support vocal cords, and a ventral pair (often fused) of cricoid cartilage (...). These cartilages are regarded as derivatives of posterior visceral arches of ancestors. Together they constitute the larynx, a structure characteristic of tetrapods. (...) (In mammals) Paired arytenoid cartilages help support and control the vocal cords. The cricoid cartilage is single. Two additional cartilages are present that are lacking in other vertebrates: a large ventral thyroid cartilage (...) and a cartilage in the epiglottis.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001308", ontology="VHOG", source="ISBN:978-0471090588 Hildebrand M, Analysis of vertebrate structure (1983) p.239-241", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky [Term] id: UBERON:0002376 @@ -205995,12 +209284,12 @@ is_a: UBERON:0000479 ! tissue relationship: has_part GO:0031012 ! extracellular matrix relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: external_definition "One of the four types of tissue in traditional classifications. It is largely a category of exclusion rather than one with a precise definition, but there are certain characteristics shared by all or most tissues in this category, such as involvement in structure and support, derived from mesoderm, and characterized largely by the traits of non-living tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000098", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001641", ontology="TAO", source="TAO:wd"} property_value: external_definition "Tissue with cells that deposit non-polarized extracellular matrix including connective tissue fibers and ground substance.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000017", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: external_ontology_notes "MA also has set of connective tissues" xsd:string {external_ontology="MA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002385 @@ -206332,7 +209621,7 @@ xref: EV:0100359 xref: FMA:9705 xref: GAID:869 xref: MA:0000255 -xref: MESH:D005064 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005064 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12500 xref: UMLS:C0015183 {source="ncithesaurus:Eustachian_Tube"} xref: VHOG:0001145 @@ -206439,7 +209728,7 @@ synonym: "vomer bone" EXACT [] xref: AAO:0000633 xref: FMA:9710 xref: MA:0001496 -xref: MESH:D055172 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055172 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33888 xref: SCTID:272678009 xref: TAO:0000308 @@ -206863,7 +210152,7 @@ subset: uberon_slim xref: BTO:0001016 xref: FMA:9887 xref: MA:0002530 -xref: MESH:D000069236 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000069236 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Pericardial_fluid is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland is_a: UBERON:0036217 ! coelomic fluid @@ -206897,7 +210186,7 @@ xref: EHDAA:3767 xref: EMAPA:16984 xref: FMA:65553 xref: GAID:706 -xref: IDOMAL:0002126 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: IDOMAL:0002126 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MA:0000219 xref: MESH:D001341 xref: NCIT:C12673 @@ -206961,7 +210250,7 @@ subset: vertebrate_core synonym: "vertebra bone" EXACT [] synonym: "vertebrae" EXACT OMO:0003004 [PHENOSCAPE:ad] xref: AAO:0000691 -xref: BTO:0006196 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006196 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: CALOHA:TS-2352 xref: EFO:0001371 xref: EMAPA:32740 @@ -207103,7 +210392,7 @@ xref: EHDAA2_RETIRED:0003154 xref: EHDAA:6520 xref: EMAPA:17524 xref: EV:0100151 -xref: FBbt:00004969 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004969 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:72979 xref: galen:Surface xref: HAO:0000421 @@ -207127,9 +210416,9 @@ relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_part UBERON:0007376 ! outer epithelium relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounded_by UBERON:0013514 ! space surrounding organism +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tfhayamizu property_value: homology_notes "(...) the integument of many tetrapods is reinforced by a morphologically and structurally diverse assemblage of skeletal elements. These elements are widely understood to be derivatives of the once all-encompassing dermal skeleton of stem-gnathostomes (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000403", ontology="VHOG", source="DOI:10.1111/j.1469-7580.2008.01043.x Vickaryous MK, Sire JY, The integumentary skeleton of tetrapods: origin, evolution, and development. J Anat (2009)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tfhayamizu [Term] id: UBERON:0002417 @@ -207194,13 +210483,13 @@ relationship: has_part CL:0000138 ! chondrocyte relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0002204 ! musculoskeletal system property_value: axiom_lost_from_external_ontology "relationship loss: subclass specialized connective tissue (AAO:0000571)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000060", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg" xsd:anyURI property_value: external_definition "A type of dense connective tissue. It is composed of cells called chondrocytes which are dispersed in a firm gel-like ground substance, called the matrix. Cartilage is avascular (contains no blood vessels) and nutrients are diffused through the matrix. Cartilage is found in the joints, the rib cage, the ear, the nose, in the throat and between intervertebral disks. It makes up virtually the entire skeleton in chondrichthyes.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000060", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Portion of tissue which is connective tissue composed of collagen and/or elastin fibers and chondrocytes. Cartilage is avascular and provides both skeletal functions and a framework upon which bone is deposited.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001501", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Skeletal tissue that is avascular, rich in glycosaminoglycans (GAGs) and typically includes chondrocytes within isolated lacunae. Cartilage tissue is deposited by chondroblasts.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000040", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: homology_notes "Phylogenetic analysis suggests that cartilage arose independently in cnidarians, hemichordates, vertebrates, arthropods, annelids, brachiopods, and molluscs - or a common ancestor of brachiopods and molluscs (...). Analyses of cartilage as a tissue and of the development of invertebrate cartilages are consistent with homology between invertebrate and vertebrate cartilage. From the discussion above, it will be clear that understanding genetic changes underlying cartilage evolution is key to determining whether the multiple origins of cartilage represent parallel evolution.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001207", ontology="VHOG", source="DOI:10.1111/j.1525-142X.2011.00520.x Hall BK, Parallelism, deep homology, and evo-devo. Evolution and Development (2012)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0002419 @@ -207284,6 +210573,8 @@ relationship: part_of UBERON:0000203 {source="GO", source="ISBN:0471888893"} ! p relationship: part_of UBERON:0000956 {source="MBA-indirect", source="NIFSTD"} ! cerebral cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: curator_notes "The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum" xsd:string {source="NIF"} +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_ontology_notes "BTO:0000601 is placed here since it includes the DG. GO also includes dentate gyrus development as part of hippocampus development, so we assume when GO says 'hippocampus' it means 'hippocampal formation'. In ABA HPF = (.. subiculum) + HIP, HIP = DG + AH." xsd:string {external_ontology="BTO"} [Term] @@ -207341,8 +210632,14 @@ relationship: develops_from UBERON:0013149 {source="EHDAA2"} ! hindbrain vesicle relationship: part_of UBERON:0002028 ! hindbrain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7d/Gray734.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_definition "Fluid-filled brain cavity. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000110", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0011043", ontology="AAO", source="UBERON:0002422"} property_value: external_definition "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO][GO:0021592]." xsd:string {source="GO:0021592"} @@ -207557,7 +210854,7 @@ xref: BAMS:LH xref: BAMS:LHA xref: BIRNLEX:4037 xref: BM:Die-Hy-HLA -xref: BTO:0006481 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006481 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35480 xref: FMA:62030 xref: GAID:640 @@ -208100,10 +211397,10 @@ relationship: connected_to UBERON:0001433 {gci_relation="part_of", gci_filler="N relationship: postaxialmost_part_of UBERON:0009880 ! carpal skeleton relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0001424 ! ulna +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Carpus.png" xsd:anyURI property_value: external_definition "One of two element that constitute the basal row of carpals. It articulates with the ulna, radius, radiale, centrale (element Y), and carpal 5(4). This element originates from one condensation center or the fusion of two elements (ulnare and intermedium). Occasionally it may fuse to carpal 5(4), the radiale, or other elements.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000845", ontology="AAO", source="AAO:LAP"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: terminology_notes "this bone is termed the triquetral bone in some mammalian taxa, notably humans" xsd:string [Term] @@ -208690,7 +211987,7 @@ xref: BTO:0002859 xref: EMAPA:26981 xref: FMA:62996 xref: MA:0002680 -xref: MESH:D000071041 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000071041 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32538 xref: SCTID:362127004 xref: UMLS:C0227176 {source="ncithesaurus:Esophageal_Mucosa"} @@ -208768,10 +212065,10 @@ intersection_of: has_skeleton UBERON:0011584 ! zeugopodial skeleton relationship: distal_to UBERON:0002472 ! stylopod relationship: has_skeleton UBERON:0011584 ! zeugopodial skeleton relationship: proximal_to UBERON:0002470 ! autopod region +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: has_relational_adjective "zeugopodial" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0002472 @@ -208851,6 +212148,7 @@ property_value: editor_note "TODO - this requires work for making consistent wit id: UBERON:0002475 name: saphenous nerve def: "The largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve] +subset: human_reference_atlas subset: uberon_slim synonym: "nervus saphenus" RELATED OMO:0003011 [Wikipedia:Saphenous_nerve] xref: EMAPA:36625 @@ -208861,6 +212159,7 @@ xref: Wikipedia:Saphenous_nerve is_a: UBERON:0003431 ! leg nerve relationship: branching_part_of UBERON:0001267 ! femoral nerve relationship: part_of UBERON:0001267 ! femoral nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/de/Gray827.png" xsd:anyURI [Term] @@ -209186,8 +212485,14 @@ relationship: has_part UBERON:0008867 ! trabecular network of bone relationship: has_quality PATO:0002519 ! cancellous relationship: part_of UBERON:0002482 ! lamellar bone property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/34/Illu_compact_spongy_bone.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI [Term] id: UBERON:0002484 @@ -209232,7 +212537,8 @@ intersection_of: part_of UBERON:0002367 ! prostate gland relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland relationship: develops_from UBERON:0003820 {source="PMID:18977204"} ! prostate bud relationship: part_of UBERON:0002367 ! prostate gland -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:0002486 @@ -209406,7 +212712,7 @@ subset: uberon_slim synonym: "arteria uterina" RELATED OMO:0003011 [Wikipedia:Uterine_artery] xref: FMA:18829 xref: MA:0002799 -xref: MESH:D055988 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055988 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:244300003 xref: Wikipedia:Uterine_artery is_a: UBERON:0001190 ! ovarian artery @@ -209451,8 +212757,14 @@ xref: Wikipedia:Papillary_muscle is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002082 ! cardiac ventricle -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/8/87/Papillary_muscles.png" xsd:anyURI property_value: function_notes "These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities.[Wikipedia:Papillary_muscle]" xsd:string property_value: homology_notes "On the internal or parietal surface of the left ventricle in man and in mammals are two papillary muscles, which are almost identical and well developed.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001392", ontology="VHOG", source="DOI:10.1111/j.1368-5031.2005.00345.x", source="http://bgee.unil.ch/"} @@ -209477,8 +212789,8 @@ xref: Wikipedia:Long_bone is_a: UBERON:0001474 ! bone element relationship: contributes_to_morphology_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002091 ! appendicular skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul [Term] id: UBERON:0002496 @@ -209803,8 +213115,12 @@ intersection_of: UBERON:0002507 ! abdominal lymph node intersection_of: part_of UBERON:0002095 ! mesentery relationship: part_of UBERON:0002095 ! mesentery relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0002510 @@ -209920,13 +213236,13 @@ intersection_of: develops_from UBERON:0005863 ! cartilaginous condensation relationship: developmentally_replaces UBERON:0002418 ! cartilage tissue relationship: develops_from UBERON:0005863 ! cartilaginous condensation relationship: develops_from UBERON:0007844 {source="VSAO"} ! cartilage element +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/wdahdul property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ee/Hypertrophic_Zone_of_Epiphyseal_Plate.jpg" xsd:anyURI property_value: editor_note "placement in this class to be inferred" xsd:string property_value: external_definition "Replacement bone that forms within cartilage.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000145", ontology="VSAO", source="GO_REF:0000034, http://dx.plos.org/10.1371/journal.pone.0051070", source="PSPUB:0000170"} property_value: external_ontology_notes "some structures, e.g. in ZFA are both intramembrane and endochondral" xsd:string {external_ontology="ZFA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul property_value: seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern" xsd:anyURI [Term] @@ -210300,7 +213616,7 @@ xref: EFO:0000797 xref: EHDAA2:0003096 xref: EHDAA:2161 xref: EMAPA:18425 -xref: FBbt:00100317 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100317 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:7146 xref: FMA:86294 xref: galen:Gland @@ -210439,7 +213755,7 @@ subset: uberon_slim synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] xref: BTO:0001237 xref: EFO:0000939 -xref: FBbt:00007152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000933 xref: MAT:0000163 xref: MIAA:0000163 @@ -210554,7 +213870,7 @@ xref: AAO:0000269 xref: AAO:0000975 xref: EFO:0000941 xref: MAT:0000249 -xref: MESH:D053403 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D053403 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MIAA:0000249 xref: TAO:0000034 xref: VHOG:0001243 @@ -210671,12 +213987,12 @@ relationship: part_of UBERON:0012140 {source="PHENOSCAPE:ni"} ! digitopodium reg relationship: part_of UBERON:0012354 ! acropodium region relationship: part_of UBERON:5002544 ! digit plus metapodial segment property_value: curator_notes "this class represents the entire organism subdivision encompassing soft tissue as well as the underlying skeletal framework. The class represents the phalangeal part only - historically the term 'digit' has also been used to represent the unit consisting of a series of phalanges together with a metapodial bone. We may in future relabel this class to avoid confusion with this concept, but the class will continue to represent the phalangeal portion" xsd:string +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/balhoff +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: has_relational_adjective "digital" xsd:string property_value: homology_notes "Our reinterpretation of the distal fin endoskeleton of Panderichthys removes the final piece of evidence supporting the formerly popular hypothesis that tetrapod digits are wholly new structures without homologues in sarcopterygian fish fins. This hypothesis, which was based partly on the complete absence of plausible digit homologues in Panderichthys (then the closest known relative of tetrapods), has already been called into question by the discovery of digit-like radials in Tiktaalik and the fact that Hox gene expression patterns closely resembling those associated with digit formation in tetrapods occur in the distal fin skeletons of paddlefish and Australian lungfish. Our new data show that Panderichthys is not an anomaly: like Tiktaalik and other fish members of the Tetrapodomorpha, it has distal radials that can be interpreted as digit homologues.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000944", ontology="VHOG", source="DOI:10.1038/nature07339 Boisvert CA, Mark-Kurik E and Ahlberg PE, The pectoral fin of Panderichthys and the origin of digits. Nature (2008)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/balhoff -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0002545 @@ -210746,9 +214062,9 @@ synonym: "wriggler" NARROW [Wikipedia:Larva] synonym: "zoea" NARROW [Wikipedia:Larva] xref: AEO:0000126 xref: BTO:0000707 -xref: FBbt:00001727 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001727 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000459 -xref: MESH:D007814 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D007814 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0002048 xref: Wikipedia:Larva is_a: UBERON:0000468 ! multicellular organism @@ -211114,8 +214430,14 @@ xref: UMLS:C0262268 {source="BIRNLEX:1036"} is_a: UBERON:0007193 ! orbital gyrus disjoint_from: UBERON:0002570 {source="lexical"} ! medial orbital gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002565 @@ -211258,8 +214580,14 @@ xref: SCTID:279194002 xref: UMLS:C0175179 {source="BIRNLEX:1046"} is_a: UBERON:0007193 ! orbital gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002571 @@ -211380,8 +214708,14 @@ intersection_of: part_of UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002577 @@ -211489,8 +214823,14 @@ is_a: UBERON:0000200 ! gyrus relationship: contributes_to_morphology_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/6/66/Postcentral_gyrus.png" xsd:anyURI [Term] @@ -211984,7 +215324,7 @@ xref: CALOHA:TS-2061 xref: DHBA:12155 xref: FMA:72719 xref: HBA:4219 -xref: MESH:D065726 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065726 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:834 {source="BIRNLEX:1128"} xref: SCTID:279215006 xref: UMLS:C0458337 {source="BIRNLEX:1128"} @@ -212141,7 +215481,7 @@ synonym: "neuropilus" RELATED OMO:0003011 [Wikipedia:Neuropil] xref: BIRNLEX:1142 xref: BTO:0005268 xref: CALOHA:TS-2403 -xref: FBbt:00005139 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005139 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:261269 xref: GAID:740 xref: MESH:D019581 @@ -212555,7 +215895,7 @@ xref: BTO:0004676 xref: EFO:0001987 xref: FMA:62394 xref: MBA:924 -xref: MESH:D065850 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065850 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32291 xref: neuronames:487 {source="BIRNLEX:1202"} xref: SCTID:362391000 @@ -212568,8 +215908,14 @@ relationship: has_part UBERON:0002038 ! substantia nigra relationship: part_of UBERON:0001891 ! midbrain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e9/Gray689.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002624 @@ -212609,7 +215955,7 @@ xref: BAMS:MEPO xref: BAMS:MnPO xref: BIRNLEX:1208 xref: BM:MPO -xref: BTO:0006168 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:13063 xref: FMA:62323 xref: HBA:4548 @@ -212706,8 +216052,14 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002630 @@ -212756,7 +216108,7 @@ xref: EMAPA:37499 {source="MA:th"} xref: EV:0100243 xref: FMA:72464 xref: MA:0001056 -xref: MESH:D065843 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065843 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32409 xref: neuronames:539 {source="BIRNLEX:1218"} xref: UMLS:C0175414 {source="BIRNLEX:1218"} @@ -212829,7 +216181,7 @@ xref: FMA:54562 xref: HBA:9206 xref: MA:0001029 xref: MBA:621 -xref: MESH:D066266 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066266 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33140 xref: neuronames:559 {source="BIRNLEX:1222"} xref: SCTID:38390003 @@ -213005,7 +216357,7 @@ xref: DHBA:12239 xref: EMAPA:35570 xref: FMA:62406 xref: HBA:9018 -xref: MESH:D066265 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066265 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:501 {source="BIRNLEX:1235"} xref: SCTID:369234009 xref: UMLS:C0228394 {source="BIRNLEX:1235"} @@ -213117,8 +216469,14 @@ xref: FMA:80183 xref: OldNeuroNames:-1278177547 {source="BIRNLEX:1247"} is_a: UBERON:0007193 ! orbital gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002645 @@ -213439,8 +216797,14 @@ is_a: UBERON:0000200 ! gyrus disjoint_from: UBERON:0022383 {source="lexical"} ! anterior parahippocampal gyrus relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002658 @@ -213532,8 +216896,14 @@ xref: Wikipedia:Superior_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/50/Superior_frontal_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002662 @@ -214011,7 +217381,7 @@ xref: FMA:54504 xref: HBA:9136 xref: MA:0001010 xref: MBA:653 -xref: MESH:D065827 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065827 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12836 xref: neuronames:585 {source="BIRNLEX:1366"} xref: SCTID:280165008 @@ -214082,7 +217452,7 @@ xref: FMA:72585 xref: HBA:9646 xref: MA:0002981 xref: MBA:222 -xref: MESH:D065849 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065849 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:740 {source="BIRNLEX:1369"} xref: UMLS:C0175516 {source="BIRNLEX:1369"} xref: Wikipedia:Nucleus_raphe_obscurus @@ -214225,14 +217595,14 @@ xref: BAMS:OV xref: BAMS:SoC xref: BAMS:VOLT xref: BIRNLEX:1400 -xref: BTO:0006268 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006268 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12106 xref: DMBA:15582 xref: EMAPA:37742 {source="MA:th"} xref: FMA:62315 xref: MA:0003018 xref: MBA:763 -xref: MESH:D066278 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066278 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:383 {source="BIRNLEX:1400"} xref: NLXANAT:100313 xref: UMLS:C0175316 {source="BIRNLEX:1400"} @@ -214599,8 +217969,14 @@ xref: Wikipedia:Middle_frontal_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/7/7f/Middle_frontal_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002703 @@ -214628,8 +218004,14 @@ xref: Wikipedia:Precentral_gyrus is_a: UBERON:0015593 ! frontal gyrus relationship: part_of UBERON:0001870 ! frontal cortex property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/eb/Ba4.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002704 @@ -214653,7 +218035,7 @@ xref: EV:0100217 xref: FMA:62023 xref: MA:0000868 xref: MBA:1008 -xref: MESH:D005829 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005829 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:351 {source="BIRNLEX:1461"} xref: SCTID:361550004 xref: Wikipedia:Metathalamus @@ -214692,7 +218074,7 @@ xref: EMAPA:35573 xref: FMA:62020 xref: MA:0000864 xref: MBA:571 -xref: MESH:D020644 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D020644 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:306 {source="BIRNLEX:1462"} xref: SCTID:279163002 xref: Wikipedia:Midline_nuclear_group @@ -214756,7 +218138,7 @@ xref: BAMS:P xref: BIRNLEX:1464 xref: BM:CST xref: BM:Me-PyT -xref: BTO:0006132 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006132 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12776 xref: DMBA:17756 xref: EMAPA:36600 @@ -215015,7 +218397,7 @@ synonym: "tractus rubrospinalis" RELATED OMO:0003011 [Wikipedia:Rubrospinal_trac xref: BAMS:rs xref: BAMS:rust xref: BIRNLEX:1476 -xref: BTO:0006159 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006159 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12782 xref: DMBA:17792 xref: FMA:72640 @@ -215316,7 +218698,7 @@ synonym: "segmenta cervicalia medullae spinalis [1-8" EXACT OMO:0003011 [FMA:711 xref: BIRNLEX:1499 xref: FMA:71166 xref: MA:0003081 -xref: MESH:D066193 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066193 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C12892 xref: neuronames:1654 xref: SCTID:180960003 @@ -215657,8 +219039,14 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002739 @@ -215742,8 +219130,14 @@ disjoint_from: UBERON:0002756 {source="lexical"} ! anterior cingulate gyrus relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Gray727.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002741 @@ -215824,7 +219218,7 @@ xref: DHBA:10349 xref: EMAPA:35164 xref: FMA:77700 xref: HBA:4300 -xref: MESH:D066187 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066187 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1997 {source="BIRNLEX:1560"} xref: PBA:128012976 xref: Wikipedia:Basal_forebrain @@ -215960,7 +219354,7 @@ synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: BAMS:ITG xref: BIRNLEX:1577 xref: BM:Tel-ITG -xref: BTO:0006175 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006175 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12142 xref: FMA:61907 xref: HBA:4147 @@ -215974,8 +219368,14 @@ relationship: capable_of_part_of GO:0007601 {source="Wikipedia"} ! visual percep relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Gray726.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002752 @@ -215989,7 +219389,7 @@ synonym: "tractus olivocerebellaris" RELATED OMO:0003011 [NeuroNames:804] xref: BAMS:oc xref: BAMS:oct xref: BIRNLEX:1579 -xref: BTO:0006157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12747 xref: FMA:72638 xref: MBA:404 @@ -216040,7 +219440,7 @@ synonym: "tectospinal fibers" EXACT [FMA:72614] xref: BAMS:pd xref: BIRNLEX:1590 xref: FMA:72614 -xref: MESH:D065844 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D065844 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:780 {source="BIRNLEX:1590"} xref: UMLS:C0175542 {source="BIRNLEX:1590"} is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain @@ -216106,8 +219506,14 @@ relationship: part_of UBERON:0002967 ! cingulate gyrus relationship: part_of UBERON:0009835 ! anterior cingulate cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray727_anterior_cingulate_cortex.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002757 @@ -216449,7 +219855,7 @@ synonym: "gyrus temporalis superior" RELATED OMO:0003011 [Wikipedia:Superior_tem xref: BAMS:STG xref: BIRNLEX:1648 xref: BM:Tel-STG -xref: BTO:0006177 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006177 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12140 xref: EFO:0001944 xref: FMA:61905 @@ -216465,8 +219871,14 @@ relationship: contributes_to_morphology_of UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1d/Superior_temporal_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002770 @@ -216505,7 +219917,7 @@ synonym: "medial temporal gyrus" RELATED [Wikipedia:Middle_temporal_gyrus] synonym: "middle (medial) temporal gyrus" RELATED [BAMS:MTG] xref: BAMS:MTG xref: BIRNLEX:1653 -xref: BTO:0006176 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006176 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12141 xref: EFO:0002466 xref: FMA:61906 @@ -216520,8 +219932,14 @@ is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0001871 ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/49/WOROI_60_loc.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002772 @@ -216632,7 +220050,7 @@ xref: DMBA:16423 xref: EV:0100206 xref: FMA:62022 xref: MBA:637 -xref: MESH:D020651 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D020651 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:333 {source="BIRNLEX:1669"} xref: SCTID:279125005 xref: UMLS:C0228333 {source="BIRNLEX:1669"} @@ -217351,8 +220769,16 @@ is_a: UBERON:0001869 ! cerebral hemisphere intersection_of: UBERON:0001869 ! cerebral hemisphere intersection_of: in_left_side_of UBERON:0000955 ! brain relationship: in_left_side_of UBERON:0000955 ! brain -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -217369,8 +220795,16 @@ is_a: UBERON:0001869 ! cerebral hemisphere intersection_of: UBERON:0001869 ! cerebral hemisphere intersection_of: in_right_side_of UBERON:0000955 ! brain relationship: in_right_side_of UBERON:0000955 ! brain -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -218828,7 +222262,7 @@ xref: FMA:74047 xref: HBA:4359 xref: MA:0002923 xref: MBA:536 -xref: MESH:D066274 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066274 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:243 {source="BIRNLEX:2682"} xref: PBA:10121 xref: UMLS:C0175219 {source="BIRNLEX:2682"} @@ -219195,7 +222629,7 @@ xref: BAMS:Ent xref: BIRNLEX:2709 xref: BTO:0004345 xref: EV:0100179 -xref: MESH:D018728 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D018728 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2056 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex @@ -219351,8 +222785,14 @@ intersection_of: part_of UBERON:0002021 ! occipital lobe relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e3/Human_brain_lateral_view_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002903 @@ -219522,8 +222962,14 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b3/Operculum.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002912 @@ -219948,7 +223394,7 @@ xref: DHBA:12796 xref: FMA:72487 xref: HBA:9197 xref: MBA:841 -xref: MESH:D065833 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065833 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:594 {source="BIRNLEX:707"} xref: SCTID:369019006 xref: UMLS:C0152379 {source="BIRNLEX:707"} @@ -220250,8 +223696,14 @@ is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 {source="FMA"} ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray727_lingual_gyrus.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002944 @@ -220362,8 +223814,14 @@ xref: UMLS:C0149547 {source="BIRNLEX:751"} is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0010262 ! operculum of brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002948 @@ -220383,8 +223841,14 @@ xref: UMLS:C0228230 {source="BIRNLEX:758"} is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002949 @@ -220791,7 +224255,7 @@ xref: BTO:0003976 xref: DHBA:12156 xref: FMA:62434 xref: HBA:4220 -xref: MESH:D006179 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D006179 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C96217 xref: neuronames:159 {source="BIRNLEX:798"} xref: SCTID:279208003 @@ -221154,8 +224618,14 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0002981 @@ -221341,8 +224811,8 @@ is_obsolete: true replaced_by: GO:0005883 consider: BIRNLEX:846 consider: FMA:63859 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao1316272517 consider: NCIT:C13263 -consider: NIF_Subcellular:sao1316272517 consider: UMLS:C0027834 [Term] @@ -221633,9 +225103,9 @@ replaced_by: GO:0005882 consider: BIRNLEX:879 consider: FMA:63851 consider: GAID:1079 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao952483289 consider: MESH:A11.284.195.190.750.410 consider: NCIT:C13248 -consider: NIF_Subcellular:sao952483289 consider: UMLS:C0021770 [Term] @@ -221688,9 +225158,9 @@ is_obsolete: true consider: FMA:63850 consider: GAID:1080 consider: GO:0005884 +consider: http://purl.obolibrary.org/obo/NIF_Subcellular_sao2006047981 consider: MESH:A11.284.195.190.750.510 consider: NCIT:C13255 -consider: NIF_Subcellular:sao2006047981 consider: UMLS:C0025979 {source="ncithesaurus:Actin_Filament"} [Term] @@ -222103,8 +225573,14 @@ disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon relationship: part_of UBERON:0001893 {source="NIFSTD"} ! telencephalon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4d/Gray732.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0003021 @@ -222156,7 +225632,7 @@ xref: BIRNLEX:923 xref: DHBA:12416 xref: FMA:71108 xref: HBA:9135 -xref: MESH:D065821 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065821 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:557 {source="BIRNLEX:923"} xref: SCTID:362401009 xref: UMLS:C0228426 {source="BIRNLEX:923"} @@ -222169,8 +225645,14 @@ relationship: has_part UBERON:0002148 ! locus ceruleus relationship: has_part UBERON:0002149 ! superior salivatory nucleus relationship: part_of UBERON:0000988 ! pons relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/9c/Brainstem_Abducens.png" xsd:anyURI property_value: function_notes "involved in the initiation of REM sleep [Wikipedia:Pontine_tegmentum]" xsd:string @@ -222700,7 +226182,7 @@ xref: BAMS:unc xref: BIRNLEX:983 xref: DHBA:10594 xref: FMA:77636 -xref: MESH:D000083382 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000083382 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:597 {source="BIRNLEX:983"} xref: SCTID:369083001 xref: UMLS:C0228271 {source="BIRNLEX:983"} @@ -222813,7 +226295,7 @@ synonym: "olfactory placodes" EXACT OMO:0003004 [] synonym: "placoda nasalis" EXACT OMO:0003011 [] synonym: "placoda olfactoria" EXACT OMO:0003011 [] xref: AAO:0011076 -xref: BTO:0006222 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006222 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003420 xref: EHDAA2:0001232 xref: EHDAA:1504 @@ -222982,7 +226464,7 @@ subset: uberon_slim synonym: "enveloping layer" RELATED [ZFA:0001185] synonym: "epitrichium" RELATED [MP:0013530, PMID:28722897] synonym: "EVL" RELATED OMO:0003000 [ZFA:0001185] -xref: BTO:0003377 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0003377 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001846 xref: EHDAA:6538 xref: FMA:295662 @@ -223101,7 +226583,7 @@ synonym: "archinephric duct" RELATED [VHOG:0000082] synonym: "ductus pronephricus" RELATED OMO:0003011 [Wikipedia:Pronephric_duct] synonym: "pronephric ducts" RELATED OMO:0003004 [ZFA:0000150] xref: AAO:0011088 -xref: BTO:0005991 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0005991 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34279 xref: SCTID:361406002 xref: TAO:0000150 @@ -223421,12 +226903,12 @@ xref: XAO:0000225 xref: ZFA:0000162 is_a: UBERON:0003067 {source="ISBN:0471888893"} ! dorsolateral placode relationship: has_potential_to_developmentally_contribute_to UBERON:0003942 ! somatosensory system +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "The ectodermal precursor of the trigeminal ganglion. The profundal and the trigeminal ganglia are separate distally but fused at their proximal end as they condense around NF stage 24.[XAO]" xsd:string {ontology="XAO"} property_value: external_definition "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000162", ontology="TAO", source="ZFIN:curator"} property_value: homology_notes "The dorsolateral placodes (trigeminal and vestibular) develop from ectoderm lateral to the brain (...). In summary, the collective term 'placodes' refers to some rather different structures, probably with different evolutionary origins. Some sensory placodes (at least the otic and olfactory) may have homologues in basal chordates. Even if this is so, it is apparent that they were elaborated considerably during early vertebrate evolution. Epibranchial and dorsolateral placodes appear to be new; we infer that their origin depended on the evolution of specific inductive signals.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000109", ontology="VHOG", source="DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: terminology_notes "Consider naming this 'trigeminal placode complex'. Also, Fig9-5 of ISBN:0471888893 calls this the profundus placode; XAO says 'profundal and the trigeminal ganglia are separate distally but fused at their proximal end...'" xsd:string [Term] @@ -223542,7 +227024,7 @@ synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct] synonym: "renal duct" RELATED [] synonym: "Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546] xref: AAO:0000637 -xref: BTO:0005990 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0005990 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001243 xref: EHDAA:1590 xref: GAID:1315 @@ -223559,6 +227041,8 @@ is_a: UBERON:0009201 {source="GO"} ! nephric duct relationship: develops_from UBERON:0003060 ! pronephric duct relationship: develops_from UBERON:0005792 {source="EHDAA2"} ! nephric ridge relationship: part_of UBERON:0000080 ! mesonephros +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/rfoulger property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png" xsd:anyURI property_value: development_notes "In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts." xsd:string property_value: editor_note "Consider adding subclasses for male and female specific variants" xsd:string @@ -223566,8 +227050,6 @@ property_value: editor_note "TODO - mesonephric portion of the nephric duct" xsd property_value: external_definition "Anatomical structure consisting of either of a pair of longitudinal ducts which carry urine and in males, sperm, to the cloaca.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000637", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The first-formed kidney duct, which drains the kidney of most anamniotes and becomes the ductus deferens of male amniotes. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-3, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000082", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: homology_notes "(...) in all craniates, the archinephric duct develops in embryogeny.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000082", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.686", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/rfoulger [Term] id: UBERON:0003075 @@ -223586,7 +227068,7 @@ xref: EHDAA:346 xref: EHDAA:902 xref: EMAPA:35593 xref: FMA:293879 -xref: MESH:D054258 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054258 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34225 xref: neuronames:1362 xref: RETIRED_EHDAA2:0001252 @@ -223968,7 +227450,7 @@ synonym: "sclerotomes" EXACT OMO:0003004 [TAO:0001080] synonym: "sclerotomus" RELATED OMO:0003011 [Wikipedia:Sclerotome] xref: AAO:0010571 xref: AEO:0000212 -xref: BTO:0006255 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006255 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0003439 xref: EMAPA:31159 xref: FMA:295652 @@ -224238,7 +227720,7 @@ synonym: "female human body" NARROW SENSU [FMA:67812] xref: AAO:0010030 xref: BILA:0000028 xref: CARO:0000028 -xref: FBbt:00007011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67812 xref: HAO:0000028 xref: SCTID:362608006 @@ -224261,7 +227743,7 @@ synonym: "male human body" NARROW SENSU [FMA:67811] xref: AAO:0010033 xref: BILA:0000027 xref: CARO:0000027 -xref: FBbt:00007004 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67811 xref: HAO:0000027 xref: SCTID:362609003 @@ -224292,10 +227774,10 @@ xref: XAO:0003028 xref: ZFA:0000292 is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0013514 ! space surrounding organism +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: editor_note "consider obsoleting. See issue/1305" xsd:string property_value: external_definition "Organism subdivision which is the collection of anatomical structures on the body surface.[ZFA]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000292", ontology="TAO", source="ZFIN:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0003103 @@ -224924,7 +228406,7 @@ synonym: "zona pellucida" RELATED [] synonym: "zona pellucida - vitelline membrane" BROAD [VHOG:0000720] xref: AAO:0010332 xref: BTO:0001450 -xref: FBbt:00000042 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000042 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1318 xref: MESH:D014817 xref: Wikipedia:Vitelline_membrane @@ -224980,8 +228462,14 @@ relationship: part_of UBERON:0007196 ! tracheobronchial tree relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c3/Illu_conducting_passages.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.1/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.1/assets/3d-vh-m-trachea.glb" xsd:anyURI property_value: external_definition "An elongated tube which carries air to and from the lungs.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010140", ontology="AAO", source="AAO:BJB"} property_value: external_definition "The respiratory tube between the larynx and the bronchi. [Bemis_WE, Functional_Anatomy_of_the_Vertebrates:_An_Evolutionary_Perspective, Glossary_G-29, Grande_L, Liem_KF, Third_Edition_(2001)_Orlando_Fla.:_Harcourt_College_Publishers, Walker_WF][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000371", ontology="VHOG", source="http://bgee.unil.ch/"} property_value: has_relational_adjective "tracheal" xsd:string @@ -225026,7 +228514,7 @@ xref: EHDAA:6029 xref: FMA:71325 xref: MA:0000316 xref: MAT:0000340 -xref: MESH:D012886 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D012886 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: MIAA:0000340 xref: SCTID:181889008 xref: VHOG:0000334 @@ -225075,7 +228563,7 @@ id: UBERON:0003130 name: arthropod sternum def: "Ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)] synonym: "sternum" BROAD [] -xref: FBbt:00004557 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004557 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000956 xref: Wikipedia:Sternum_(arthropod) is_a: UBERON:0010000 ! multicellular anatomical structure @@ -225086,7 +228574,7 @@ property_value: editor_note "this term should be ceded to the arthropod anatomy id: UBERON:0003131 name: arthropod tibia def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg] -xref: FBbt:00004642 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004642 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0001017 xref: TADS:0000281 xref: Wikipedia:Arthropod_leg @@ -225233,7 +228721,7 @@ id: UBERON:0003142 name: prepupa def: "An organism at the prepupal stage. The prepupal stage is a life stage interposed between the larval and the pupal stages in insects that undergo a complete metamorphosis. The start of the pre-pupal stage is marked by pupariation, and the end is marked by pupation." [GO:0035210] xref: BTO:0001110 -xref: FBbt:00002952 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002952 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000812 is_a: UBERON:0000468 ! multicellular organism relationship: develops_from UBERON:0002548 ! larva @@ -225251,9 +228739,9 @@ synonym: "chrysalis" NARROW [NCBITaxon:37572, Wikipedia:Pupa] synonym: "pupae" RELATED OMO:0003004 [] xref: BTO:0001143 xref: EFO:0002684 -xref: FBbt:00002953 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002953 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000886 -xref: MESH:D011679 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D011679 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Pupa is_a: UBERON:0000468 ! multicellular organism intersection_of: UBERON:0000468 ! multicellular organism @@ -225262,12 +228750,12 @@ relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage relationship: has_quality PATO:0001187 ! pupal relationship: immediate_transformation_of UBERON:0003142 {gci_relation="part_of", gci_filler="NCBITaxon:7227"} ! prepupa relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/dosumis +property_value: dc:contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/mmc46 property_value: has_relational_adjective "pupal" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/dosumis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mmc46 [Term] id: UBERON:0003144 @@ -225355,7 +228843,7 @@ def: "The fused, compact cephalic plates that comprise the head, excluding the e subset: efo_slim xref: BTO:0004711 xref: EFO:0001927 -xref: FBbt:00004482 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004482 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000398 is_a: UBERON:6007284 ! insect region of integument relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -225375,7 +228863,7 @@ id: UBERON:0003155 name: arthropod occiput comment: arthropod specific groupings belong in separate ontology, but this is retained for disambiguation purposes synonym: "occiput" RELATED SENSU [FBbt:00004492] -xref: FBbt:00004492 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004492 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000658 xref: TGMA:0000041 is_a: UBERON:0006056 ! posterior surface of head @@ -225430,7 +228918,7 @@ synonym: "dorsal ocelli" RELATED OMO:0003004 [] synonym: "ocelli" RELATED OMO:0003004 [] synonym: "ocellus" EXACT [] xref: BTO:0001758 -xref: FBbt:00004505 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004505 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000661 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0000963 ! head sensillum @@ -225440,7 +228928,7 @@ relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda id: UBERON:0003162 name: lateral ocellus def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli] -xref: FBbt:00004506 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004506 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000481 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0003161 ! dorsal ocellus @@ -225701,7 +229189,7 @@ consider: HAO:0000157 [Term] id: UBERON:0003194 name: imaginal disc-derived wing vein -xref: FBbt:00004751 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004751 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0001095 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -225745,7 +229233,7 @@ name: egg chamber def: "A follicle of the insect ovary. It is formed by germ cells (one oocyte and several nurse cells) encapsulated in follicle cells (Armstrong et al., 2020)." [DOI:10.1530/REP-18-0593] synonym: "follicle" RELATED [FBbt:00004894] synonym: "germarium derived egg chamber" EXACT [FBbt:00004894] -xref: FBbt:00004894 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004894 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: NCIT:C61362 xref: UMLS:C1571705 {source="ncithesaurus:Follicle"} is_a: UBERON:8450001 ! egg follicle @@ -225763,7 +229251,7 @@ id: UBERON:0003201 name: exocuticle def: "The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle." [BTO:0001602] xref: BTO:0001602 -xref: FBbt:00004973 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004973 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000311 is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -225773,7 +229261,7 @@ id: UBERON:0003202 name: endocuticle def: "The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin." [BTO:0001603] xref: BTO:0001603 -xref: FBbt:00004974 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004974 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000290 is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -225825,7 +229313,7 @@ id: UBERON:0003209 name: blood nerve barrier def: "Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] -xref: MESH:D049428 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D049428 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Blood-nerve_barrier is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid @@ -225854,7 +229342,7 @@ def: "A median eye is an eye that is connected to a paired or unpaired median an synonym: "frontal ocellus" RELATED [PMID:21062451] synonym: "medial ocellus" EXACT [FBbt:00004507] synonym: "median ocellus" EXACT [HAO:0000526] -xref: FBbt:00004507 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004507 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000526 xref: Wikipedia:Ocellus#Ocelli is_a: UBERON:0000970 ! eye @@ -225871,7 +229359,7 @@ synonym: "organ of gustatory system" EXACT [OBOL:automatic] synonym: "organ of taste system" EXACT [OBOL:automatic] synonym: "taste organ" EXACT [] synonym: "taste system organ" EXACT [OBOL:automatic] -xref: FBbt:00005159 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005159 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:77853 is_a: UBERON:0000005 ! chemosensory organ intersection_of: UBERON:0000062 ! organ @@ -229078,8 +232566,14 @@ intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006518 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! right lung lobe -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0003405 @@ -229098,8 +232592,14 @@ intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0008951 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! left lung lobe -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0003406 @@ -229114,6 +232614,7 @@ is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0001004 ! respiratory system +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.0/assets/VH_F_Lung.glb" xsd:anyURI [Term] id: UBERON:0003407 @@ -230050,7 +233551,7 @@ synonym: "bone of upper extremity" RELATED [GAID:178] synonym: "bone organ of arm" EXACT [OBOL:automatic] xref: EMAPA:37303 {source="MA:th"} xref: MA:0000592 -xref: MESH:D050280 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D050280 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0008962 ! forelimb bone intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0001460 ! arm @@ -230088,7 +233589,7 @@ xref: EMAPA:19019 xref: EMAPA:35924 xref: MA:0001482 xref: MA:0003159 -xref: MESH:D005147 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005147 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C63706 xref: SCTID:181799005 xref: UMLS:C0015455 {source="ncithesaurus:Facial_Bone"} @@ -231319,8 +234820,8 @@ id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] -synonym: "lower limb skin" EXACT [FMA:23102] synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] +synonym: "lower limb skin" EXACT [FMA:23102] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] @@ -232734,8 +236235,10 @@ relationship: develops_from UBERON:0007267 ! trachea pre-cartilage rings relationship: part_of UBERON:0003126 ! trachea relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/56/Gray952.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.1/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.1/assets/3d-vh-m-trachea.glb" xsd:anyURI property_value: editor_note "check whether to classify as part of splanchoncranium" xsd:string property_value: taxon_notes "in mammals the rings are incomplete, in avians the rings are complete." xsd:string @@ -234721,7 +238224,7 @@ synonym: "floor of mouth" EXACT [FMA:86592] synonym: "floor of oval cavity" EXACT [] synonym: "floor of the oval cavity" EXACT [] synonym: "sublingual region" NARROW [GAID:1283] -xref: BTO:0006184 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006184 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: CALOHA:TS-2207 xref: EFO:0001923 xref: EMAPA:37911 {source="MA:th"} @@ -234906,7 +238409,7 @@ comment: Design pattern notes: check whether this fits the foramen design patter subset: pheno_slim subset: vertebrate_core xref: AAO:0010826 -xref: BTO:0006035 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006035 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:37868 {source="MA:th"} xref: FMA:75306 xref: GAID:228 @@ -235000,8 +238503,14 @@ relationship: derived_from_ancestral_fusion_of UBERON:0001094 ! sacral vertebra relationship: part_of UBERON:0001270 {source="FMA"} ! bony pelvis relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/ec/Gray95.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pelvis.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.0/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.1/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.2/assets/VH_F_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-female/v1.3/assets/3d-vh-f-pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.0/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.1/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.2/assets/VH_M_Pelvis.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pelvis-male/v1.3/assets/3d-vh-m-pelvis.glb" xsd:anyURI property_value: external_ontology_notes "the AAO class 'sacrum' is deliberately placed under 'sacral vertebra' rather than here" xsd:string {external_ontology="AAO"} property_value: has_relational_adjective "sacral" xsd:string @@ -235598,8 +239107,14 @@ relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5b/Gray1189.png" xsd:anyURI property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/e/e4/Bilebladder.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0003714 @@ -235632,6 +239147,7 @@ property_value: external_ontology_notes "FMA definition includes vasculature" xs id: UBERON:0003715 name: splanchnic nerve def: "The major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318] +subset: human_reference_atlas subset: pheno_slim synonym: "splanchnic nerves" RELATED [BAMS:spn] synonym: "visceral nerve" RELATED [Wikipedia:Splanchnic_nerves] @@ -235648,12 +239164,14 @@ intersection_of: innervates UBERON:0000916 ! abdomen relationship: contributes_to_morphology_of UBERON:0000013 ! sympathetic nervous system relationship: innervates UBERON:0000916 ! abdomen relationship: part_of UBERON:0000013 ! sympathetic nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: structure_notes "All carry sympathetic fibers except for the pelvic splanchnic nerves, which carry parasympathetic fibers" xsd:string [Term] id: UBERON:0003716 name: recurrent laryngeal nerve def: "A branch of the vagus nerve that supplies motor function and sensation to the larynx (voice box). It travels within the endoneurium. It is the nerve of the 6th Branchial Arch." [Wikipedia:Recurrent_laryngeal_nerve] +subset: human_reference_atlas synonym: "inferior laryngeal nerve" RELATED [GAID:804] synonym: "nervus laryngeus recurrens" EXACT OMO:0003011 [Wikipedia:Recurrent_laryngeal_nerve] synonym: "ramus recurrens" RELATED [AAO:0010754] @@ -235674,6 +239192,7 @@ relationship: develops_from UBERON:0003117 {source="Wikipedia"} ! pharyngeal arc relationship: innervates UBERON:0001737 ! larynx relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: part_of UBERON:0001759 ! vagus nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_definition "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx[AAO:0010754]." xsd:string {source="AAO:0010754"} [Term] @@ -235753,6 +239272,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/81/Gr id: UBERON:0003721 name: lingual nerve def: "The lingual nerve is a branch of the mandibular nerve (CN V3), itself a branch of the trigeminal nerve, which supplies sensory innervation to the tongue. It also carries fibers from the facial nerve, which return taste information from the anterior two thirds of the tongue." [Wikipedia:Lingual_nerve] +subset: human_reference_atlas synonym: "lingual branch of trigeminal nerve" EXACT [] synonym: "trigeminal nerve lingual branch" EXACT [] synonym: "trigeminal V nerve lingual branch" EXACT [MA:0001102] @@ -235770,6 +239290,7 @@ intersection_of: innervates UBERON:0001723 ! tongue relationship: branching_part_of UBERON:0000375 ! mandibular nerve relationship: innervates UBERON:0001723 ! tongue relationship: part_of UBERON:0000375 ! mandibular nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0003722 @@ -235875,6 +239396,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/20/Gr id: UBERON:0003726 name: thoracic nerve def: "The twelve spinal nerves on each side of the thorax. They include eleven INTERCOSTAL NERVES and one subcostal nerve. Both sensory and motor, they supply the muscles and skin of the thoracic and abdominal walls." [MESH:A08.800.800.720.800] +subset: human_reference_atlas synonym: "nervi thoracici" RELATED OMO:0003011 [Wikipedia:Thoracic_nerves] synonym: "nervus thoracis" EXACT OMO:0003011 [FMA:5860, FMA:TA] synonym: "pectoral nerve" RELATED [GAID:857] @@ -235889,6 +239411,7 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0003038 ! thoracic spinal cord relationship: extends_fibers_into UBERON:0003038 ! thoracic spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0003727 @@ -236095,7 +239618,7 @@ xref: NCIT:C32974 xref: SCTID:244015008 xref: UMLS:C1140621 {source="ncithesaurus:Leg"} xref: VHOG:0000348 -xref: VO:0010971 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0010971 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: VSAO:0005060 xref: Wikipedia:Forearm is_a: UBERON:0002471 ! zeugopod @@ -237141,7 +240664,7 @@ xref: FMA:74042 xref: HBA:12892 xref: MA:0000950 xref: MBA:382 -xref: MESH:D056547 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D056547 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32246 xref: neuronames:183 {source="BIRNLEX:1197"} xref: PBA:10058 @@ -237186,7 +240709,7 @@ xref: FMA:74044 xref: HBA:12893 xref: MA:0000951 xref: MBA:423 -xref: MESH:D056651 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D056651 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32247 xref: neuronames:184 {source="BIRNLEX:1362"} xref: PBA:10063 @@ -237235,7 +240758,7 @@ xref: FMA:74045 xref: HBA:12894 xref: MA:0000952 xref: MBA:463 -xref: MESH:D056654 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D056654 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32248 xref: neuronames:185 {source="BIRNLEX:1204"} xref: PBA:10068 @@ -237798,7 +241321,7 @@ synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic] synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic] synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic] synonym: "epithelium of choroid plexus" EXACT [FMA:242811] -xref: BTO:0006008 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006008 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:36608 xref: FMA:242811 xref: MA:0000824 @@ -237838,7 +241361,7 @@ def: "Epithelial tubes transport gases, liquids and cells from one site to anoth synonym: "epithelial or endothelial tube" EXACT [] xref: AEO:0000114 xref: EHDAA2:0003114 -xref: FBbt:00007474 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007474 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000025 ! tube is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium @@ -237880,7 +241403,7 @@ synonym: "fat body" EXACT SENSU [FBbt:00005066] synonym: "fat body sensu invertebrata" RELATED [EFO:0000810] xref: BTO:0000442 xref: EFO:0000810 -xref: FBbt:00005066 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005066 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: GAID:1213 xref: MESH:D005216 xref: MIAA:0000096 @@ -238118,7 +241641,7 @@ synonym: "gut epithelium" EXACT [EHDAA2:0004567, MA:0003201, ZFA:0005123] xref: BTO:0000956 xref: EHDAA2:0004567 xref: EMAPA:32928 -xref: FBbt:00047166 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00047166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MA:0003201 xref: NCIT:C12963 xref: TAO:0005123 @@ -238256,7 +241779,7 @@ synonym: "gland of reproductive system" EXACT [OBOL:automatic] synonym: "reproductive gland" EXACT [MA:0001751] synonym: "reproductive system gland" EXACT [OBOL:automatic] synonym: "sex gland" EXACT [MP:0000653] -xref: BTO:0006162 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MA:0001751 is_a: UBERON:0002530 ! gland is_a: UBERON:0005156 ! reproductive structure @@ -238574,9 +242097,9 @@ relationship: has_part GO:0005604 ! basement membrane relationship: has_part GO:0071953 ! elastic fiber relationship: part_of UBERON:0001776 {source="FMA", source="ZFA"} ! optic choroid relationship: part_of UBERON:0013399 ! blood vessel layer of choroid +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/gkoutos property_value: development_notes "Bruch's membrane is present by midterm in fetal development as an elastic sheet." xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos property_value: seeAlso "https://github.com/obophenotype/uberon/issues/14" xsd:anyURI property_value: structure_notes "Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid[WP]" xsd:string @@ -238779,8 +242302,8 @@ def: "The lymph nodes located outside the thoracic and abdominal cavities, such subset: pheno_slim xref: EMAPA:37938 {source="MA:th"} is_a: UBERON:0000029 ! lymph node -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0003970 @@ -238922,8 +242445,14 @@ xref: FMA:67611 xref: galen:Valve is_a: UBERON:0000064 ! organ part relationship: capable_of GO:0065008 ! regulation of biological quality -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.0/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.1/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.2/assets/VH_F_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-female/v1.3/assets/3d-vh-f-heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.0/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.1/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.2/assets/VH_M_Heart.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/heart-male/v1.3/assets/3d-vh-m-heart.glb" xsd:anyURI property_value: has_relational_adjective "valvular" xsd:string [Term] @@ -239602,7 +243131,7 @@ synonym: "epimere mesoderm" RELATED [] synonym: "mesenchyma dermatomiale" RELATED OMO:0003011 [Wikipedia:Dermatomal_mesenchyme] xref: AAO:0011028 xref: AEO:0001017 -xref: BTO:0006248 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006248 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2_RETIRED:0003428 xref: EHDAA:1719 xref: EHDAA:1725 @@ -239787,7 +243316,8 @@ relationship: contributes_to_morphology_of UBERON:0003124 ! chorion membrane relationship: part_of UBERON:0003124 ! chorion membrane relationship: part_of UBERON:8600038 ! placental disc relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.0/assets/VH_F_Placenta.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/placenta-full-term-female/v1.1/assets/3d-vh-f-placenta-full-term.glb" xsd:anyURI [Term] id: UBERON:0004029 @@ -239885,7 +243415,7 @@ xref: EMAPA:32703 xref: https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png xref: neuronames:3233 xref: PBA:294021932 -xref: VO:0011276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0011276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Subplate is_a: UBERON:0014950 ! layer of developing cerebral cortex intersection_of: UBERON:0014950 ! layer of developing cerebral cortex @@ -240120,7 +243650,7 @@ relationship: adjacent_to UBERON:0002336 ! corpus callosum [Term] id: UBERON:0004053 name: external male genitalia -def: "The external masculine genital organs, including the penis and scrotum." [MP:0009199] +def: "The external masculine genital organs." [MP:0009199] comment: TODO: Relabel. Make distinct organ class. See https://github.com/obophenotype/uberon/issues/547 subset: organ_slim subset: pheno_slim @@ -240140,6 +243670,8 @@ disjoint_from: UBERON:0005056 ! external female genitalia disjoint_from: UBERON:0009196 ! indifferent external genitalia relationship: contributes_to_morphology_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system +relationship: present_in_taxon NCBITaxon:50557 ! Insecta +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0004054 @@ -240826,9 +244358,9 @@ is_a: UBERON:0003947 ! brain ventricle/choroid plexus is_a: UBERON:0005358 ! ventricle of nervous system relationship: part_of UBERON:0005282 ! ventricular system of brain relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct[BIRNLEX:1356]." xsd:string {source="BIRNLEX:1356"} property_value: external_ontology_notes "FMA draws the distinction between e.g. 'fourth ventricle' and 'cavity of fourth ventricle'. The latter is a cavity, and part of the former, which is a region. The superclass of 'fourth ventricle' is_a 'region of ventricular system of the brain'. We place this class here, although it is not equivalent to ventricles, as it includes ventricle bodies." xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0004087 @@ -240852,8 +244384,14 @@ is_a: UBERON:0003479 ! thoracic cavity vein is_a: UBERON:0013768 ! great vessel of heart relationship: located_in UBERON:0002224 ! thoracic cavity property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/35/Relations_of_the_aorta,_trachea,_esophagus_and_other_heart_structures.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7c/Heart_numlabels.png" xsd:anyURI [Term] @@ -241775,8 +245313,14 @@ intersection_of: part_of UBERON:0000948 ! heart relationship: drains UBERON:0002349 ! myocardium relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000948 ! heart -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0004149 @@ -242500,7 +246044,7 @@ subset: pheno_slim synonym: "SSB" EXACT OMO:0003000 [] synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html] xref: EMAPA:27756 -xref: VO:0010896 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: VO:0010896 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0005589 is_a: UBERON:0005423 ! developing anatomical structure relationship: develops_from UBERON:0004198 {source="GO"} ! comma-shaped body @@ -242541,10 +246085,22 @@ relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla relationship: fma_set_term FMA:74268 relationship: part_of UBERON:0000362 ! renal medulla relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/7e/Kidney_PioM.png" xsd:anyURI property_value: external_ontology_notes "not the same as FMA:50609 Pyramid (which is a volume / dimensional entity)" xsd:string {external_ontology="FMA"} @@ -243132,8 +246688,12 @@ is_a: UBERON:0004228 ! urinary bladder smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001258 ! neck of urinary bladder relationship: part_of UBERON:0001258 ! neck of urinary bladder -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.2/assets/3d-vh-f-urinary-bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.2/assets/3d-vh-m-urinary-bladder.glb" xsd:anyURI [Term] id: UBERON:0004231 @@ -244261,6 +247821,7 @@ property_value: function_notes "It is not a true skeleton, but it does provide s id: UBERON:0004293 name: parasympathetic nerve def: "A nerve that is part of a parasympathetic nervous system [Automatically generated definition]." [OBOL:automatic] +subset: human_reference_atlas synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic] xref: EHDAA2:0001401 xref: EMAPA:17271 @@ -244275,6 +247836,7 @@ relationship: has_developmental_contribution_from UBERON:0005428 {source="NCBIBo relationship: has_developmental_contribution_from UBERON:0010075 {source="NCBIBook:NBK10065"} ! sacral neural crest relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000011 ! parasympathetic nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0004294 @@ -244356,9 +247918,9 @@ intersection_of: UBERON:0003221 ! phalanx intersection_of: proximally_connected_to UBERON:0004301 ! middle phalanx relationship: part_of UBERON:0009551 ! distal segment of digit relationship: proximally_connected_to UBERON:0004301 ! middle phalanx +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/ab/Scheme_human_hand_bones-en.svg" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "In human anatomy, the distal phalanges of the four fingers and toes articulate proximally with the intermediate phalanges at the distal interphalangeal joints (DIP); in the thumb and big toe, with only two phalanges, the distal phalanges articulate proximally with the proximal phalanges. The distal phalanges carry and shape nails and claws and are therefore occasionally referred to as the ungual phalanges. The distal phalanges are cone-shaped in most mammals, including most primates, but relatively wide and flat in humans." xsd:string [Term] @@ -245357,7 +248919,7 @@ xref: EHDAA2:0001525 xref: EHDAA:185 xref: EMAPA:16072 xref: FMA:293110 -xref: MESH:D054240 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054240 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C28402 xref: SCTID:361438007 xref: UMLS:C0033153 {source="ncithesaurus:Primitive_Streak"} @@ -245836,9 +249398,9 @@ relationship: adjacent_to UBERON:0001985 ! corneal endothelium relationship: has_quality PATO:0000964 ! transparent relationship: part_of UBERON:0000964 ! cornea relationship: produced_by UBERON:0001985 {source="Cline et al"} ! corneal endothelium +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/gkoutos property_value: external_definition "Acellular anatomical structure composed of collagen, Descemet's membrane is secreted as a basement membrane of the corneal endothelium. Located between the stroma and the corneal endothelium, it is approximately 0.15 micrometer thick at 6 months post-fertilization.[ZFIN]" xsd:string {date_retrieved="2016-05-01", external_class="TAO:0002157", ontology="ZFIN", source="ZFIN:ZDB-PUB-061010-3", source="https://orcid.org/0000-0001-9114-8737"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/gkoutos property_value: seeAlso "https://github.com/obophenotype/uberon/issues/15" xsd:anyURI [Term] @@ -247269,7 +250831,7 @@ replaced_by: UBERON:0000042 id: UBERON:0004458 name: obsolete body cavity or lining def: "Either a cavity lining or the space it encloses." [https://github.com/obophenotype/uberon/issues/12] -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall is_obsolete: true replaced_by: UBERON:0005906 @@ -248229,12 +251791,12 @@ relationship: part_of UBERON:0000062 ! organ relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa relationship: present_in_taxon NCBITaxon:4751 ! Fungi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/wdahdul property_value: editor_note "should be declared disjoint from organ, but in some ontologies (e.g. ZFA), structures such as neural spines are classified as bones (and hence organs)" xsd:string property_value: external_definition "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, or tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010278", ontology="AAO", source="AAO:BJB"} property_value: external_definition "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001834", ontology="TAO", source="TAO:wd"} property_value: external_definition "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000180", ontology="VSAO", source="TAO:curator"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/wdahdul [Term] id: UBERON:0004530 @@ -248367,8 +251929,10 @@ intersection_of: has_part UBERON:0002391 ! lymph relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0006558 ! lymphatic part of lymphoid system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI property_value: editor_note "consider merging with parent" xsd:string property_value: external_definition "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0005105", ontology="TAO", source="ZFIN:curator"} @@ -248390,8 +251954,11 @@ intersection_of: composed_primarily_of UBERON:0001981 ! blood vessel relationship: composed_primarily_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0004535 ! cardiovascular system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0004538 @@ -248408,9 +251975,14 @@ is_a: UBERON:0002113 ! kidney intersection_of: UBERON:0002113 ! kidney intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Left.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248428,9 +252000,14 @@ is_a: UBERON:0002113 ! kidney intersection_of: UBERON:0002113 ! kidney intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Kidney_Right.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248551,8 +252128,14 @@ is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000970 ! eye intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: in_left_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.3/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.3/assets/3d-vh-m-eye-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248573,8 +252156,12 @@ is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000970 ! eye intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: in_right_side_of UBERON:0000468 ! multicellular organism -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.3/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.3/assets/3d-vh-m-eye-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -248603,7 +252190,7 @@ xref: EMAPA:18267 xref: FMA:14915 xref: galen:LowerEsophagealSphincter xref: MA:0002951 -xref: MESH:D049630 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D049630 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33009 xref: SCTID:267809009 xref: UMLS:C0227192 {source="ncithesaurus:Lower_Esophageal_Sphincter"} @@ -249596,7 +253183,7 @@ synonym: "otic region" RELATED [] synonym: "periotic" RELATED [] synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 -xref: BTO:0005981 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0005981 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:17596 xref: SCTID:361515007 xref: VHOG:0000854 @@ -250298,8 +253885,14 @@ xref: Wikipedia:Straight_gyrus is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0016525 {source="FMA"} ! frontal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0004672 @@ -250345,6 +253938,7 @@ xref: BIRNLEX:1346 xref: DHBA:12865 xref: DMBA:17739 xref: FMA:52610 +xref: HBA:9322 xref: SCTID:280185007 xref: TAO:0000192 xref: ZFA:0000192 @@ -250404,6 +253998,7 @@ xref: BIRNLEX:1588 xref: DHBA:12886 xref: DMBA:17750 xref: FMA:72632 +xref: HBA:9343 xref: neuronames:798 xref: UMLS:C0175555 is_a: UBERON:0006843 {source="FMA"} ! root of cranial nerve @@ -250429,7 +254024,7 @@ synonym: "spinal cord lateral horn" EXACT [BIRNLEX:2666] xref: BIRNLEX:2666 xref: FMA:256536 xref: MA:0001118 -xref: MESH:D066152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32938 xref: UMLS:C0228567 {source="BIRNLEX:2666"} xref: UMLS:C0228582 {source="ncithesaurus:Lateral_Horn_of_the_Spinal_Cord"} @@ -251347,7 +254942,7 @@ xref: FMA:76928 xref: HBA:4698 xref: MA:0000202 xref: MBA:645 -xref: MESH:D065814 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065814 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33866 xref: neuronames:2463 xref: SCTID:279105006 @@ -251363,8 +254958,14 @@ relationship: mutually_spatially_disjoint_with UBERON:0002245 ! cerebellar hemis relationship: part_of UBERON:0002129 {source="ABA"} ! cerebellar cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/CerebellumDiv.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: external_ontology_notes "we follow MBA and NIFSTD in making this part of the cerebellar cortex, but FMA may handle this differently" xsd:string {external_ontology="NIF"} property_value: taxon_notes "In bony fish, or teleosts, it has been proposed that the cerebellar auricles, which receive a large amount of input from the vestibulolateral line system, constitute the vestibulocerebellum and are homologues of the flocculonodular lobe of higher vertebrates along with the corpus cerebelli, which receives spinocerebellar and tectocerebellar fibers. The labyrinth and the lateral line organs of lampreys have structural and functional similarity. An important difference between the two structures is that the arrangement of the lateral line organs are such that they are sensitive to relative motion of the fluid surrounding the animal, whereas the labyrinths, having very similar sensing mechanisms, are sensitive to endolymph, providing information concerning the animal's own equilibrium of the body and orientation in space" xsd:string {source="WP"} @@ -251489,8 +255090,16 @@ relationship: only_in_taxon NCBITaxon:32523 {source="Wikipedia"} ! Tetrapoda relationship: part_of UBERON:0002894 ! olfactory cortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Human_brainstem_anterior_view_2_description.JPG" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.0/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.0/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI property_value: taxon_notes "Piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion" xsd:string {source="WP"} [Term] @@ -251669,7 +255278,7 @@ synonym: "trilaminar disk" RELATED [https://orcid.org/0000-0002-6601-2165] synonym: "trilaminar germ" RELATED [https://orcid.org/0000-0002-6601-2165] xref: BILA:0000060 xref: BTO:0001403 -xref: FBbt:00005317 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005317 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:293108 xref: GAID:1302 xref: MESH:D005775 @@ -251907,14 +255516,14 @@ relationship: overlaps UBERON:0003113 {source="ZFA-modifed", source="cjm"} ! der relationship: part_of UBERON:0003278 {source="AAO"} ! skeleton of lower jaw property_value: axiom_lost_from_external_ontology "relationship loss: develops_from articular bone (TAO:0001805)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO"} property_value: axiom_lost_from_external_ontology "relationship loss: overlaps dentary-anguloarticular joint (TAO:0001749)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO"} +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "TODO - resolve part_of relationships" xsd:string property_value: external_comment "The presence of an anguloarticular is interpreted as a synapomorphy of the Clupeocephala (Patterson and Rosen, 1977; Arratia, 1999).[TAO]" xsd:string {date_retrieved="2012-09-06", external_class="TAO:0000467", ontology="TAO", source="Curator"} property_value: external_definition "Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000467", ontology="TAO", source="ZFIN:curator"} property_value: external_definition "Endochondral ossification of the posterior articular part of Meckel's cartilage.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000028", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "TAO has a distinct class for articular - in fact we need (at least) 3 classes here - articular, anguloarticular and malleus, arranged into a single VHOG group" xsd:string {external_ontology="TAO"} property_value: homology_notes "According to this theory (Reichert-Gaupp theory), the mammalian stapes is derived from the reptilian columella, the incus from the quadrate and the malleus from the articular (...).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000690", ontology="VHOG", source="DOI:10.1017/S0022215100009087 Gerrie J, The phylogeny of the mammalian tympanic cavity and auditory ossicles. The Journal of Laryngology and Otology (1948", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: seeAlso "https://github.com/obophenotype/uberon/issues/98" xsd:anyURI [Term] @@ -252021,7 +255630,7 @@ synonym: "germinal disc" EXACT [Wikipedia:Germinal_disc] xref: AAO:0000043 xref: BTO:0000494 xref: BTO:0001504 -xref: MESH:D054239 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054239 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34150 xref: TAO:0001175 xref: Wikipedia:Germinal_disc @@ -252103,14 +255712,14 @@ xref: ZFA:0001455 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0007831 {source="VSAO"} ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of scapular area (AAO:0000935)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000781", ontology="AAO"} +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: editor_note "todo - decide whether to create separate classes for cartilage & ossified. Wikipedia considers this absent in Therians, but if considered as a grouping of scapula and coracoid then it would be present" xsd:string property_value: external_definition "either a fusion of the scapula and coracoid (the two main bones of the shoulder girdle), or the scapula & coracoid considered as a single structural unit.[Palaeos]" xsd:string {date_retrieved="2012-09-10", source="http://palaeos.com/vertebrates/glossary/glossaryS.html"} property_value: external_definition "Fused, ossified portions of the scapula, procoracoid, and coracoid.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000781", ontology="AAO", source="AAO:LAP"} property_value: external_definition "Pectoral fin cartilage that consists of a paired cartilaginous plate of the embryonic primary pectoral girdle and from which the scapular and coracaoid bones ossify.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001455", ontology="TAO", source="TAO:GA_TG", source="ZFIN:curator"} property_value: external_ontology_notes "ZFA defines as precursor to scapula and coracoid. Cartilage in TAO" xsd:string {external_ontology="ZFA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0004754 @@ -254069,9 +257678,9 @@ is_a: UBERON:0002429 ! cervical lymph node is_a: UBERON:0003968 {source="CL:tm"} ! peripheral lymph node is_a: UBERON:0015917 ! superficial lymph node relationship: dubious_for_taxon NCBITaxon:10090 {source="PMID:16624319"} ! Mus musculus +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4e/Illu_quiz_hn_03.jpg" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0004871 @@ -254344,8 +257953,14 @@ is_a: UBERON:0004886 ! lung hilus intersection_of: UBERON:0004886 ! lung hilus intersection_of: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0002168 ! left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "The part of the left lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000483", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lung+hilus"} [Term] @@ -254368,8 +257983,14 @@ is_a: UBERON:0004886 ! lung hilus intersection_of: UBERON:0004886 ! lung hilus intersection_of: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0002167 ! right lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI property_value: external_definition "The part of the right lung that is not covered by pleura and through which blood vessels, bronchi, nerves and lymphatics enter and leave the lung. [TFD][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000482", ontology="VHOG", source="http://bgee.unil.ch/", source="http://medical-dictionary.thefreedictionary.com/lung+hilus"} [Term] @@ -254579,7 +258200,7 @@ synonym: "optic nerve" BROAD [BTO:0000966] synonym: "optic nerve (generic)" EXACT [] xref: BTO:0000966 xref: EV:0100351 -xref: FBbt:00001956 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001956 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000232 is_a: UBERON:0000122 ! neuron projection bundle intersection_of: UBERON:0000122 ! neuron projection bundle @@ -254597,7 +258218,7 @@ name: articulation def: "Anatomical structure that connects two or more adjacent skeletal elements or hardened body parts." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "joint" NARROW [] -xref: FBbt:00005811 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0004770 ! articular system @@ -254765,7 +258386,9 @@ xref: SCTID:245389007 is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000320 ! duodenal mucosa property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/43/Gray1057.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb" xsd:anyURI [Term] id: UBERON:0004915 @@ -254895,7 +258518,7 @@ synonym: "gut section" RELATED [FBbt:00100315] synonym: "intestinal tract" RELATED [] synonym: "segment of intestinal tract" RELATED [] synonym: "subdivision of alimentary system" RELATED [FMA:71131] -xref: FBbt:00100315 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100315 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:71131 is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube @@ -257378,6 +261001,8 @@ intersection_of: UBERON:0004176 ! external genitalia intersection_of: part_of UBERON:0000474 ! female reproductive system disjoint_from: UBERON:0009196 ! indifferent external genitalia relationship: part_of UBERON:0000474 ! female reproductive system +relationship: present_in_taxon NCBITaxon:50557 ! Insecta +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: taxon_notes "in eutherians, this is known as the vulva in and composed of the mons pubis, the labia majora and minora, the clitoris, the vestibule of the vagina and its glands, and the opening of the urethra and of the vagina [MP:0003126]" xsd:string [Term] @@ -257908,10 +261533,12 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gr id: UBERON:0005099 name: short descending thin limb def: "The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]." [GO:0072063] +subset: human_reference_atlas is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0006914 ! squamous epithelium relationship: has_part CL:0000076 ! squamous epithelial cell relationship: part_of UBERON:0001285 ! nephron +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: editor_note "TODO - epithelium types" xsd:string [Term] @@ -258438,7 +262065,7 @@ synonym: "invertebrate tracheal system" EXACT [] synonym: "open tracheal system" EXACT [] synonym: "tracheal system" BROAD SENSU [FBbt:00005024] xref: BTO:0003870 -xref: FBbt:00005024 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: SPD:0000427 xref: TADS:0000043 is_a: UBERON:0001004 ! respiratory system @@ -258476,8 +262103,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001017 ! central nervous system -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0005159 @@ -258533,7 +262160,7 @@ synonym: "multi-cell-component structure" EXACT [CARO:0001000] synonym: "multi-cell-part structure" EXACT [CARO:0001000] xref: AAO:0011000 xref: CARO:0001000 -xref: FBbt:00007060 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007060 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:83115 is_a: UBERON:0000061 ! anatomical structure relationship: composed_primarily_of GO:0005575 ! cellular_component @@ -258974,8 +262601,8 @@ relationship: contributes_to_morphology_of UBERON:0004042 ! spleen secondary B f relationship: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0005197 @@ -260207,7 +263834,7 @@ xref: EHDAA:5526 xref: EMAPA:17082 xref: HBA:9512 xref: MA:0000205 -xref: MESH:D054024 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: VHOG:0000456 xref: Wikipedia:Myelencephalon is_a: UBERON:0004733 ! segmental subdivision of hindbrain @@ -260466,6 +264093,7 @@ property_value: taxon_notes "there is no true anatomical equivalent in humans" x id: UBERON:0005303 name: hypogastric nerve def: "The transition between the superior hypogastric plexus and the inferior hypogastric plexus." [Wikipedia:Hypogastric_nerve] +subset: human_reference_atlas synonym: "hypogastric nerve plexus" EXACT [MA:0001140] synonym: "hypogastric plexus" EXACT [EMAPA:18225] synonym: "nervus hypogastricus" RELATED OMO:0003011 [Wikipedia:Hypogastric_nerve] @@ -260479,6 +264107,7 @@ xref: UMLS:C1711378 {source="ncithesaurus:Hypogastric_Nerve_Plexus"} xref: Wikipedia:Hypogastric_nerve is_a: UBERON:0001816 ! autonomic nerve plexus relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray847.png" xsd:anyURI property_value: editor_note "check plexus vs nerve. WP indicates it is a 'transition'" xsd:string @@ -260875,7 +264504,7 @@ def: "The chorioallantoic membrane is a vascular membrane found in eggs of some synonym: "chorioallantois" EXACT [BTO:0000251] synonym: "respiratory membrane" BROAD [ISBN:0073040584] xref: BTO:0000251 -xref: MESH:D049033 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D049033 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C28216 xref: UMLS:C0178551 {source="ncithesaurus:Chorioallantoic_Membrane"} xref: Wikipedia:Chorioallantoic_membrane @@ -261001,7 +264630,7 @@ xref: BAMS:CTXpl xref: DHBA:10515 xref: EMAPA:32711 xref: MBA:695 -xref: MESH:D002540 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D002540 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2702 xref: PBA:294021914 is_a: UBERON:0014950 ! layer of developing cerebral cortex @@ -261364,7 +264993,7 @@ xref: EMAPA:35209 xref: FMA:242770 is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001016 ! nervous system -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0005359 @@ -261522,6 +265151,7 @@ property_value: homology_notes "These (the epibranchial placodes) are focal thic id: UBERON:0005364 name: superior vagus X ganglion def: "The upper ganglion of the vagus nerve located at the jugular foramen." [ISBN:0-683-40008-8, MP:0001101] +subset: human_reference_atlas subset: pheno_slim synonym: "ganglion superius (nervus vagus)" EXACT [FMA:6229] synonym: "ganglion superius nervus vagi" EXACT OMO:0003011 [FMA:6229, FMA:TA] @@ -261542,6 +265172,7 @@ xref: SCTID:280197008 xref: VHOG:0000686 xref: Wikipedia:Superior_ganglion_of_vagus_nerve is_a: UBERON:0005362 ! vagus X ganglion +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0005366 @@ -261957,7 +265588,7 @@ is_a: UBERON:0010499 {source="Wikipedia"} ! pseudostratified ciliated columnar e intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0015786 ! respiratory segment of nasal mucosa relationship: part_of UBERON:0015786 ! respiratory segment of nasal mucosa -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0005386 @@ -262011,7 +265642,7 @@ id: UBERON:0005388 name: photoreceptor array def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165] synonym: "light-sensitive tissue" EXACT [] -xref: FBbt:00004200 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004200 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: composed_primarily_of CL:0000210 ! photoreceptor cell @@ -262393,7 +266024,7 @@ xref: EMAPA:36576 xref: FMA:77614 xref: MA:0002972 xref: MBA:493 -xref: MESH:D066328 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066328 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2341 xref: NLX:57107 xref: PBA:10091 @@ -262488,11 +266119,11 @@ subset: pheno_slim synonym: "circumventricular organ" EXACT [NLXANAT:20090312] synonym: "circumventricular organ of neuraxis" EXACT [FMA:84081] synonym: "CVO" EXACT OMO:0003000 [NLXANAT:20090312] -xref: BTO:0006267 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006267 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EMAPA:35243 xref: FMA:84081 xref: MA:0002942 -xref: MESH:D066280 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066280 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1242 xref: NLXANAT:20090312 xref: Wikipedia:Circumventricular_organs @@ -262850,7 +266481,7 @@ synonym: "developmental tissue" RELATED [MIAA:0000019] xref: AEO:0000125 xref: CALOHA:TS-2122 xref: EHDAA2:0003125 -xref: FBbt:00007006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:292313 xref: MIAA:0000019 is_a: UBERON:0000465 ! material anatomical entity @@ -263147,8 +266778,12 @@ relationship: connecting_branch_of UBERON:0001640 ! celiac artery relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/65/Gray532.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0005437 @@ -263182,7 +266817,7 @@ xref: EHDAA2:0000320 xref: EHDAA:9884 xref: EMAPA:37836 {source="MA:th"} xref: FMA:4706 -xref: MESH:D054326 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D054326 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32378 xref: SCTID:244386006 xref: UMLS:C0456944 {source="ncithesaurus:Coronary_Sinus"} @@ -263195,8 +266830,14 @@ relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0004581 ! systemic venous system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/5f/Gray491.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: structure_notes "The sinus, before entering the auricle, is considerably dilated - nearly to the size of the end of the little finger. Its wall is partly muscular, and at its junction with the great coronary vein is somewhat constricted and furnished with a valve consisting of two unequal segments" xsd:string {source="WP"} [Term] @@ -263624,7 +267265,7 @@ xref: EHDAA2:0000893 xref: EHDAA:10631 xref: EMAPA:18713 xref: FMA:56432 -xref: MESH:D000080869 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080869 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C12496 xref: SCTID:361735006 xref: UMLS:C0222712 {source="ncithesaurus:Jugular_Foramen"} @@ -263657,8 +267298,14 @@ is_a: UBERON:0005483 ! thymus lobe intersection_of: UBERON:0005483 ! thymus lobe intersection_of: in_left_side_of UBERON:0002370 ! thymus relationship: in_left_side_of UBERON:0002370 ! thymus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.3/assets/3d-vh-f-thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.3/assets/3d-vh-m-thymus.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -263890,8 +267537,14 @@ is_a: UBERON:0005483 ! thymus lobe intersection_of: UBERON:0005483 ! thymus lobe intersection_of: in_right_side_of UBERON:0002370 ! thymus relationship: in_right_side_of UBERON:0002370 ! thymus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Thymus.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.0/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.1/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.2/assets/VH_F_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-female/v1.3/assets/3d-vh-f-thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.0/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.1/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.2/assets/VH_M_Thymus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/thymus-male/v1.3/assets/3d-vh-m-thymus.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -263994,6 +267647,7 @@ property_value: external_definition "The sigmoid sinuses, within a human head, a id: UBERON:0005476 name: spinal nerve trunk def: "Trunk part of spinal nerve, where dorsal and ventral roots meet to form the spinal nerve, before branching off to dorsal and ventral rami." [http://orcid.org/0000-0002-6601-2165] +subset: human_reference_atlas synonym: "spinal nerve (trunk)" EXACT [FMA:5929] synonym: "spinal neural trunk" EXACT [FMA:5929] synonym: "trunk of spinal nerve" EXACT [FMA:5929] @@ -264003,6 +267657,7 @@ is_a: UBERON:0002464 ! nerve trunk intersection_of: UBERON:0002464 ! nerve trunk intersection_of: part_of UBERON:0001780 ! spinal nerve relationship: part_of UBERON:0001780 ! spinal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0005477 @@ -264170,7 +267825,7 @@ xref: UMLS:C0225848 {source="ncithesaurus:Eustachian_Valve"} xref: Wikipedia:Valve_of_inferior_vena_cava is_a: UBERON:0000946 ! cardiac valve is_a: UBERON:0006675 ! venous valve -relationship: part_of UBERON:0001072 ! posterior vena cava +relationship: part_of UBERON:0001072 ! inferior vena cava property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/6c/Gray493.png" xsd:anyURI property_value: editor_note "this class should be subdivided into the embryonic structure and the vestigial adult remnant, a small endocardialfold" xsd:string property_value: external_definition "Vestigial cardiac valve which is continuous with the valve of the coronary sinus and the crista terminalis." xsd:string {source="FMA:9240"} @@ -264243,6 +267898,7 @@ property_value: homology_notes "Within each vertebrate group, the veins compose id: UBERON:0005488 name: superior mesenteric plexus def: "The superior mesenteric plexus is a continuation of the lower part of the celiac plexus, receiving a branch from the junction of the right vagus nerve with the plexus. It surrounds the superior mesenteric artery, accompanies it into the mesentery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , pancreatic branches to the pancreas; intestinal branches to the small intestine; and ileocolic, right colic, and middle colic branches, which supply the corresponding parts of the great intestine. The nerves composing this plexus are white in color and firm in texture; in the upper part of the plexus close to the origin of the superior mesenteric artery is the superior mesenteric ganglion." [Wikipedia:Superior_mesenteric_plexus] +subset: human_reference_atlas synonym: "plexus mesentericus superior" EXACT OMO:0003011 [Wikipedia:Superior_mesenteric_plexus] synonym: "superior mesenteric nerve plexus" EXACT [FMA:6639] xref: FMA:6639 @@ -264256,6 +267912,7 @@ intersection_of: innervates UBERON:0000059 ! large intestine relationship: extends_fibers_into UBERON:0002010 ! celiac nerve plexus relationship: innervates UBERON:0000059 ! large intestine relationship: part_of RO:0002577 ! system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/63/Gray848.png" xsd:anyURI [Term] @@ -264429,7 +268086,7 @@ def: "Multi-tissue structure that arises from the heart rudiment and will become subset: vertebrate_core synonym: "early primitive heart tube" NARROW [EMAPA:16208] synonym: "primitive heart tube" EXACT [EMAPA:16215] -xref: BTO:0006179 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006179 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EHDAA2:0001512 xref: EHDAA:424 xref: EHDAA:436 @@ -265798,7 +269455,7 @@ name: extraembryonic membrane def: "Intrinsic membrane that arises from embryonic germ layers and grow to surround the developing embryo." [ISBN:0073040584] xref: EHDAA2:0004714 xref: FMA:305915 -xref: MESH:D005321 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D005321 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:362840007 is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0004716 ! conceptus @@ -267139,7 +270796,7 @@ synonym: "tunica advetitia" NARROW [Wikipedia:Adventitia] synonym: "tunica externa" NARROW [FMA:45635] xref: BTO:0002010 xref: FMA:45635 -xref: MESH:D063194 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D063194 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:30180000 xref: Wikipedia:Adventitia is_a: UBERON:0004923 ! organ component layer @@ -267408,7 +271065,7 @@ xref: EMAPA:28251 xref: EMAPA:30965 xref: FMA:74274 xref: MA:0001659 -xref: MESH:D050533 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D050533 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32683 xref: SCTID:243897006 xref: TAO:0005285 @@ -268647,7 +272304,7 @@ id: UBERON:0005895 name: insect leg def: "The walking appendages of each segment of the ventral adult external thorax[FBbt]. A leg derived from an imaginal disc[GO]." [FBbt:00004640, GO:0007480] synonym: "imaginal disc-derived leg" EXACT [GO:0007480] -xref: FBbt:00004640 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004640 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: MAT:0000095 xref: MIAA:0000095 xref: TGMA:0000164 @@ -268730,7 +272387,7 @@ synonym: "occipital region of head" EXACT [FMA:49187] xref: AAO:0010199 xref: BTO:0004675 xref: FMA:49187 -xref: MESH:D009778 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009778 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2431 xref: SCTID:362618001 xref: TAO:0001414 @@ -268785,7 +272442,7 @@ synonym: "insect labium" EXACT [BTO:0004104] synonym: "labium" RELATED [BTO:0004104] synonym: "labrum" RELATED [BTO:0004104] xref: BTO:0004104 -xref: FBbt:00004522 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004522 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000456 xref: TADS:0000039 xref: Wikipedia:Labrum_(arthropod_mouthpart) @@ -268805,7 +272462,7 @@ xref: SCTID:362890006 is_a: UBERON:0000062 ! organ relationship: has_part UBERON:0000042 ! serous membrane relationship: has_part UBERON:0002553 ! anatomical cavity -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0005908 @@ -268826,8 +272483,8 @@ relationship: part_of UBERON:0035639 {source="HPO:pr"} ! ocular adnexa id: UBERON:0005910 name: obsolete transitional epithelium def: "See urothelium." [https://github.com/obophenotype/uberon/issues/92] +property_value: dc:contributor https://github.com/cmungall property_value: editor_note "was merged with urothelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'. MP treats them differently" xsd:string {seeAlso="https://github.com/obophenotype/uberon/issues/92"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall is_obsolete: true replaced_by: UBERON:0000365 @@ -269118,9 +272775,9 @@ relationship: develops_from UBERON:0003089 ! sclerotome relationship: part_of UBERON:0004288 ! skeleton relationship: part_of UBERON:0011137 ! axial skeletal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/8/8b/Axial_skeleton_diagram.svg" xsd:anyURI property_value: external_definition "Skeletal subdivision of the central body axis including the cranium, vertebrae, notochord, ribs, and sternum.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000056", ontology="VSAO", source="PSPUB:0000170"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] @@ -269308,10 +272965,22 @@ relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0003956 ! aqueous drainage system relationship: surrounds UBERON:0001766 ! anterior chamber of eyeball property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/2/22/Gray870.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.3/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.3/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.3/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.3/assets/3d-vh-m-eye-r.glb" xsd:anyURI property_value: editor_note "TODO check syns - ligaments" xsd:string [Term] @@ -270766,8 +274435,12 @@ relationship: develops_from UBERON:0005760 {source="EHDAA2-modified"} ! urorecta relationship: develops_from UBERON:0009845 {source="EHDAA2"} ! urogenital sinus mesenchyme relationship: part_of UBERON:0001255 ! urinary bladder relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Urinary_Bladder.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.0/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.1/assets/VH_F_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-female/v1.2/assets/3d-vh-f-urinary-bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.0/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.1/assets/VH_M_Urinary_Bladder.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/urinary-bladder-male/v1.2/assets/3d-vh-m-urinary-bladder.glb" xsd:anyURI [Term] id: UBERON:0006083 @@ -270788,7 +274461,7 @@ xref: EFO:0001978 xref: EMAPA:35682 xref: MA:0000912 xref: MBA:922 -xref: MESH:D000071039 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000071039 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2425 xref: NLXANAT:1005006 xref: PBA:128012080 @@ -270977,8 +274650,14 @@ is_a: UBERON:0000200 {source="FMA"} ! gyrus is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0006093 @@ -271005,8 +274684,14 @@ xref: Wikipedia:Precuneus is_a: UBERON:0000200 {source="FMA"} ! gyrus relationship: part_of UBERON:0001872 ! parietal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0006094 @@ -271118,7 +274803,7 @@ xref: BAMS:BG xref: BAMS:BNC xref: BIRNLEX:1629 xref: EV:0100182 -xref: MESH:D001479 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D001479 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:224 {source="BIRNLEX:1629"} xref: UMLS:C0004781 {source="BIRNLEX:1629"} is_a: UBERON:0007245 ! nuclear complex of neuraxis @@ -271328,7 +275013,7 @@ xref: BAMS:CMA xref: BIRNLEX:2680 xref: DHBA:10372 xref: FMA:84015 -xref: MESH:D066276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:238 {source="BIRNLEX:2680"} xref: UMLS:C0175214 {source="BIRNLEX:2680"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter @@ -274670,7 +278355,7 @@ synonym: "fibrocartilaginous ring" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "fibrous ring" RELATED [BTO:0003627] xref: BTO:0003627 xref: FMA:76704 -xref: MESH:D000070616 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000070616 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0001995 ! fibrocartilage [Term] @@ -274717,8 +278402,10 @@ xref: SCTID:278775008 xref: UMLS:C0457871 {source="BIRNLEX:1251"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006448 @@ -274735,8 +278422,10 @@ xref: SCTID:278776009 xref: UMLS:C0457872 {source="BIRNLEX:1336"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006449 @@ -274753,8 +278442,10 @@ xref: SCTID:278778005 xref: UMLS:C0457874 {source="BIRNLEX:1340"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006450 @@ -274771,8 +278462,10 @@ xref: SCTID:278777000 xref: UMLS:C0457873 {source="BIRNLEX:1345"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006451 @@ -274789,8 +278482,10 @@ xref: SCTID:278779002 xref: UMLS:C0457875 {source="BIRNLEX:1352"} is_a: UBERON:0007716 ! lumbar subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006452 @@ -274808,8 +278503,10 @@ xref: SCTID:278766006 xref: UMLS:C0457862 {source="BIRNLEX:1378"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006453 @@ -274826,8 +278523,10 @@ xref: SCTID:278767002 xref: UMLS:C0457863 {source="BIRNLEX:1383"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006454 @@ -274844,8 +278543,10 @@ xref: SCTID:278768007 xref: UMLS:C0457864 {source="BIRNLEX:1387"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006455 @@ -274862,8 +278563,10 @@ xref: SCTID:278769004 xref: UMLS:C0457865 {source="BIRNLEX:1392"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006456 @@ -274880,8 +278583,10 @@ xref: SCTID:278770003 xref: UMLS:C0457866 {source="BIRNLEX:1398"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006457 @@ -274898,8 +278603,10 @@ xref: SCTID:278762008 xref: UMLS:C0457859 {source="BIRNLEX:1452"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006458 @@ -274916,8 +278623,10 @@ xref: SCTID:278763003 xref: UMLS:C0457860 {source="BIRNLEX:1454"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006459 @@ -274934,8 +278643,10 @@ xref: SCTID:278764009 xref: UMLS:C0457861 {source="BIRNLEX:1458"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006460 @@ -274952,8 +278663,10 @@ xref: SCTID:278780004 xref: UMLS:C0457876 {source="BIRNLEX:1532"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006461 @@ -274970,8 +278683,10 @@ xref: SCTID:278781000 xref: UMLS:C0457877 {source="BIRNLEX:1539"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006462 @@ -274988,8 +278703,10 @@ xref: SCTID:278782007 xref: UMLS:C0457878 {source="BIRNLEX:1544"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006463 @@ -275006,8 +278723,10 @@ xref: SCTID:278783002 xref: UMLS:C0457879 {source="BIRNLEX:1548"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006464 @@ -275024,7 +278743,8 @@ xref: SCTID:278784008 xref: UMLS:C0457880 {source="BIRNLEX:1553"} is_a: UBERON:0007717 ! sacral subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006465 @@ -275041,8 +278761,10 @@ xref: SCTID:278771004 xref: UMLS:C0457867 {source="BIRNLEX:1584"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006466 @@ -275059,8 +278781,10 @@ xref: SCTID:278772006 xref: UMLS:C0457868 {source="BIRNLEX:1591"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006467 @@ -275077,8 +278801,10 @@ xref: SCTID:278773001 xref: UMLS:C0457869 {source="BIRNLEX:1596"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006468 @@ -275095,8 +278821,10 @@ xref: SCTID:278774007 xref: UMLS:C0457870 {source="BIRNLEX:1598"} is_a: UBERON:0007715 ! thoracic subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006469 @@ -275114,8 +278842,10 @@ xref: SCTID:278754000 xref: UMLS:C0457851 {source="BIRNLEX:1694"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006470 @@ -275132,8 +278862,10 @@ xref: SCTID:278761001 xref: UMLS:C0457858 {source="BIRNLEX:1696"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006471 @@ -275564,8 +279296,10 @@ xref: SCTID:278756003 xref: UMLS:C0457853 {source="BIRNLEX:744"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006489 @@ -275582,8 +279316,10 @@ xref: SCTID:278755004 xref: UMLS:C0457852 {source="BIRNLEX:752"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006490 @@ -275600,8 +279336,10 @@ xref: SCTID:278757007 xref: UMLS:C0457854 {source="BIRNLEX:753"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006491 @@ -275618,8 +279356,10 @@ xref: SCTID:278758002 xref: UMLS:C0457855 {source="BIRNLEX:760"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006492 @@ -275636,8 +279376,10 @@ xref: SCTID:278759005 xref: UMLS:C0457856 {source="BIRNLEX:766"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006493 @@ -275654,8 +279396,10 @@ xref: SCTID:278760000 xref: UMLS:C0457857 {source="BIRNLEX:773"} is_a: UBERON:0007714 ! cervical subsegment of spinal cord relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Spinal_Cord.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.0/assets/VH_F_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-female/v1.1/assets/3d-vh-f-spinal-cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.0/assets/VH_M_Spinal_Cord.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/spinal-cord-male/v1.1/assets/3d-vh-m-spinal-cord.glb" xsd:anyURI [Term] id: UBERON:0006494 @@ -275807,7 +279551,7 @@ xref: EMAPA:32780 xref: FMA:83684 xref: MA:0000889 xref: MBA:803 -xref: MESH:D005917 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D005917 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2673 is_a: UBERON:0002020 {source="FMA"} ! gray matter is_a: UBERON:0003528 ! brain gray matter @@ -275851,6 +279595,14 @@ xref: UMLS:C0022651 {source="ncithesaurus:Renal_Calyx"} is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI property_value: has_relational_adjective "calyceal" xsd:string [Term] @@ -276442,8 +280194,12 @@ xref: Wikipedia:Ligamentum_venosum is_a: UBERON:0006592 {source="FMA"} ! transformed vein relationship: develops_from UBERON:0002083 ! ductus venosus property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a3/Gray1087-liver.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0006588 @@ -276454,7 +280210,7 @@ synonym: "ligamentum teres hepatis" EXACT OMO:0003011 [FMA:14079, FMA:TA] synonym: "ligamentum teres hepatitis" EXACT [Wikipedia:Round_ligament_of_liver] synonym: "ligamentum teres of liver" EXACT [FMA:14079] xref: FMA:14079 -xref: MESH:D000069592 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000069592 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34008 xref: SCTID:262209009 xref: UMLS:C0230247 {source="ncithesaurus:Round_Ligament_of_the_Liver"} @@ -276465,8 +280221,12 @@ is_a: UBERON:0013139 ! ligament of liver disjoint_from: UBERON:0006589 ! round ligament of uterus relationship: develops_from UBERON:0002066 ! umbilical vein relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0006589 @@ -276480,7 +280240,7 @@ synonym: "round ligament" BROAD [GAID:130] synonym: "round ligament of the uterus" EXACT [Wikipedia:Round_ligament_of_uterus] xref: FMA:20420 xref: GAID:130 -xref: MESH:D012404 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D012404 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C34009 xref: SCTID:245495009 xref: UMLS:C0035877 {source="ncithesaurus:Round_Ligament_of_the_Uterus"} @@ -276849,7 +280609,7 @@ synonym: "aponeurotic" RELATED [Wikipedia:Aponeurosis] xref: AEO:0000092 xref: EHDAA2:0003092 xref: FMA:9722 -xref: MESH:D000070606 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000070606 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32133 xref: SCTID:331712004 xref: UMLS:C0225205 {source="ncithesaurus:Aponeurosis"} @@ -277511,7 +281271,7 @@ synonym: "glenoid facet" EXACT [] xref: AAO:0000749 xref: EMAPA:25122 xref: FMA:23275 -xref: MESH:D061165 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D061165 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32682 xref: SCTID:181914008 xref: UMLS:C1261046 {source="ncithesaurus:Glenoid_Fossa"} @@ -277853,7 +281613,7 @@ name: venous valve def: "A valve that is part of a vein." [OBOL:automatic] synonym: "valve of vein" EXACT [FMA:68095] xref: FMA:68095 -xref: MESH:D055422 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D055422 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003978 ! valve is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve @@ -277942,8 +281702,10 @@ relationship: connects UBERON:0003126 ! trachea relationship: part_of UBERON:0003126 ! trachea relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/f2/Diagrama_de_los_pulmones-c.svg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-trachea.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.0/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-female/v1.1/assets/3d-vh-f-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.0/assets/3d-vh-m-trachea.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/trachea-male/v1.1/assets/3d-vh-m-trachea.glb" xsd:anyURI [Term] id: UBERON:0006680 @@ -278061,8 +281823,13 @@ relationship: connected_to UBERON:0001139 ! common iliac vein relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001317 {source="FMA/obol"} ! internal iliac vein -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0006688 @@ -278155,7 +281922,7 @@ synonym: "vertebral canal" RELATED [Wikipedia:Spinal_canal] xref: AAO:0000693 xref: FMA:9680 xref: GAID:242 -xref: MESH:D013115 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013115 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33869 xref: NCIT:C34221 xref: SCTID:361746009 @@ -278665,8 +282432,12 @@ xref: MA:0001641 xref: SCTID:271288003 is_a: UBERON:0001115 ! left lobe of liver disjoint_from: UBERON:0006728 {source="lexical"} ! liver left medial lobe -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0006728 @@ -278679,8 +282450,12 @@ xref: FMA:14500 xref: MA:0001642 xref: SCTID:271085007 is_a: UBERON:0001115 ! left lobe of liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0006729 @@ -279371,7 +283146,7 @@ id: UBERON:0006795 name: arthropod optic lobe def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5] synonym: "optic lobe" RELATED SENSU [FBbt:00003701] -xref: FBbt:00003701 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003701 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006794 ! visual processing part of nervous system relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -279577,10 +283352,10 @@ xref: Wikipedia:Lateral_epicondyle_of_the_humerus is_a: UBERON:0009978 {source="FMA"} ! epicondyle is_a: UBERON:0016497 ! epicondyle of humerus relationship: part_of UBERON:0004404 {source="FMA"} ! distal epiphysis of humerus +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/c/c6/Gray420.png" xsd:anyURI property_value: external_definition "Rounded projection at the distal head of the humerus (larger and more prominent than the lateral epicondyle) and lateral to the humeral head, which serves as a place of attachment for the mm extensor antebrachii et carpi radialis, extensor digitorum communis, and in part to the m extensor antebrachii et carpi ulnaris.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000758", ontology="AAO", source="AAO:LAP"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0006809 @@ -279601,7 +283376,7 @@ synonym: "olecranon process of ulna" EXACT [Wikipedia:Olecranon] synonym: "ulnar process" RELATED [AAO:0000843] xref: AAO:0000843 xref: FMA:39795 -xref: MESH:D056740 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D056740 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C33200 xref: SCTID:181949001 xref: UMLS:C0223710 {source="ncithesaurus:Olecranon"} @@ -279636,7 +283411,7 @@ synonym: "foramen mentalis" RELATED [Wikipedia:Mental_foramen] synonym: "mental foramina" EXACT OMO:0003004 [OBOL:automatic] xref: AAO:0000298 xref: FMA:53171 -xref: MESH:D000080383 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080383 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:244686000 xref: Wikipedia:Mental_foramen is_a: UBERON:0010313 ! neural crest-derived structure @@ -279770,7 +283545,7 @@ id: UBERON:0006832 name: lumen of open tracheal system trachea def: "An anatomical space that surrounded_by a open tracheal system trachea." [OBOL:automatic] synonym: "tracheal lumen" BROAD SENSU [FBbt:00007410] -xref: FBbt:00007410 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007410 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0003127 ! open tracheal system trachea @@ -279797,7 +283572,7 @@ name: uterus or analog def: "A subdivision of a the reproductive tract in a female organism that is the site of embryo development." [http://orcid.org/0000-0002-6601-2165] subset: grouping_class synonym: "uterus" BROAD SENSU [FBbt:00004924] -xref: FBbt:00004924 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004924 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: TADS:0000421 xref: WBbt:0006760 is_a: UBERON:0005156 ! reproductive structure @@ -279852,6 +283627,7 @@ property_value: editor_note "TODO - check AAO; grouping is made on basis of rela id: UBERON:0006838 name: ventral ramus of spinal nerve def: "Branch of spinal nerve that innervates the hypaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] +subset: human_reference_atlas synonym: "anterior branch of spinal nerve" RELATED [FMA:5982] synonym: "anterior primary ramus of spinal nerve" EXACT [FMA:5982] synonym: "anterior ramus of spinal nerve" EXACT [FMA:5982] @@ -279869,12 +283645,14 @@ disjoint_from: UBERON:0006839 {source="lexical"} ! dorsal ramus of spinal nerve relationship: branching_part_of UBERON:0005476 ! spinal nerve trunk relationship: innervates UBERON:0008777 ! hypaxial musculature relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d2/Spinal_nerve.svg" xsd:anyURI [Term] id: UBERON:0006839 name: dorsal ramus of spinal nerve def: "Branch of spinal nerve that innervates the epaxial muscles." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] +subset: human_reference_atlas synonym: "dorsal ramus" BROAD [FMA:5983] synonym: "posterior branch of spinal nerve" RELATED [FMA:5983] synonym: "posterior primary ramus" EXACT [FMA:5983] @@ -279890,6 +283668,7 @@ intersection_of: innervates UBERON:0008778 ! epaxial musculature relationship: branching_part_of UBERON:0005476 ! spinal nerve trunk relationship: innervates UBERON:0008778 ! epaxial musculature relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray819.png" xsd:anyURI [Term] @@ -279967,6 +283746,7 @@ subset: vertebrate_core synonym: "cranial nerve root" EXACT [FMA:52609] synonym: "cranial neural root" EXACT [FMA:52609] xref: FMA:52609 +xref: HBA:9299 xref: SCTID:280161004 xref: TAO:0002190 xref: ZFA:0001663 @@ -280382,7 +284162,7 @@ def: "The distalmost portion of the digestive tract, derived from the hindgut, a synonym: "rectal part of digestive tract" RELATED [] synonym: "rectum" NARROW [FBbt:00005756] synonym: "terminal section of digestive tract" RELATED [] -xref: FBbt:00005756 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005756 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: WBbt:0005773 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: continuous_with UBERON:0001245 ! anus @@ -280411,7 +284191,7 @@ name: seminal fluid secreting gland def: "A gland that secretes a seminal fluid." [OBOL:automatic] subset: grouping_class subset: organ_slim -xref: FBbt:00004958 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004958 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: WBbt:0006870 is_a: UBERON:0005399 ! male reproductive gland intersection_of: UBERON:0002530 ! gland @@ -281068,7 +284848,6 @@ relationship: channel_for UBERON:0001968 ! semen relationship: channels_from UBERON:0000473 ! testis relationship: in_lateral_side_of UBERON:0004054 {source="FMA-abduced-lr"} ! internal male genitalia relationship: part_of UBERON:0004054 ! internal male genitalia -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI property_value: external_ontology_notes "in FMA includes as parts: seminal vesicle, efferent ductule (vas efferentia), epididymis, deferent duct (vas deferens), ejaculatory duct" xsd:string {external_ontology="FMA"} property_value: taxon_notes "we use this as a generic grouping class for a number of taxa" xsd:string @@ -281248,8 +285027,14 @@ relationship: connected_to UBERON:0005438 ! coronary sinus relationship: in_left_side_of UBERON:0000948 ! heart relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/57/Gray556.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0006959 @@ -281563,7 +285348,7 @@ def: "A multicellular organism that existence_ends_with a post-juvenile adult st synonym: "adult" BROAD [] synonym: "adults" EXACT OMO:0003004 [TAO:0002046] xref: BILA:0000078 -xref: FBbt:00003004 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: galen:Adult xref: HAO:0000087 xref: http://neurolex.org/wiki/Category\:Adult_organism @@ -281757,7 +285542,7 @@ id: UBERON:0007109 name: meconium def: "A dark greenish mass that accumulates in the bowel during fetal life and is discharged shortly after birth." [BTO:0000838] xref: BTO:0000838 -xref: MESH:D008470 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D008470 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ncithesaurus:Meconium is_a: UBERON:0001988 ! feces relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -282207,7 +285992,7 @@ subset: organ_slim synonym: "anterior kidney" EXACT [ZFA:0000669] synonym: "kidney marrow" EXACT [ZFA:0000669] xref: BTO:0005189 -xref: MESH:D060226 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060226 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0000669 xref: ZFA:0000669 is_a: UBERON:0003103 ! compound organ @@ -283044,6 +286829,8 @@ relationship: has_part UBERON:0003126 ! trachea relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium relationship: part_of UBERON:0001558 ! lower respiratory tract relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI [Term] id: UBERON:0007197 @@ -283600,7 +287387,7 @@ name: preoptic nucleus def: "A nucleus of brain that is part of a preoptic area." [OBOL:automatic] xref: CALOHA:TS-0822 xref: EV:0100226 -xref: MESH:D011301 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D011301 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0006569 ! diencephalic nucleus intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001928 ! preoptic area @@ -283806,7 +287593,7 @@ synonym: "pharyngoesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphinc synonym: "upper esophageal sphincter muscle" EXACT [] synonym: "upper oesophageal sphincter" EXACT [Wikipedia:Upper_esophageal_sphincter] xref: FMA:265203 -xref: MESH:D049631 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D049631 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C33836 xref: UMLS:C1451819 {source="ncithesaurus:Upper_Esophageal_Sphincter"} xref: Wikipedia:Upper_esophageal_sphincter @@ -284570,7 +288357,7 @@ xref: EHDAA:9194 xref: EMAPA:32952 xref: FMA:10419 xref: MA:0000124 -xref: MESH:D010183 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D010183 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:181278006 xref: TAO:0001372 xref: VHOG:0000254 @@ -284962,7 +288749,7 @@ synonym: "outer epidermal layer" EXACT [] synonym: "outer epithelial layer" EXACT [] xref: BSA:0000073 xref: BTO:0000313 -xref: FBbt:00004993 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004993 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000298 xref: TADS:0000109 xref: WBbt:0005733 @@ -285163,7 +288950,7 @@ xref: DHBA:12222 xref: FMA:77787 xref: HBA:9455 xref: MBA:165 -xref: MESH:D066267 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D066267 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0001965 {source="ABA"} ! substantia nigra pars compacta relationship: mutually_spatially_disjoint_with UBERON:0002142 {source="ABA"} ! pedunculopontine tegmental nucleus @@ -285884,7 +289671,7 @@ xref: DMBA:16973 xref: EMAPA:37436 {source="MA:th"} xref: MA:0001011 xref: MBA:280 -xref: MESH:D065835 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065835 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1087 is_a: UBERON:0006331 {source="MA"} ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus @@ -285954,7 +289741,7 @@ xref: DMBA:16844 xref: EMAPA:35657 xref: MA:0001019 xref: MBA:867 -xref: MESH:D065823 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D065823 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:1927 xref: NLX:23647 xref: Wikipedia:Parabrachial_nucleus @@ -286064,7 +289851,7 @@ xref: CALOHA:TS-2077 xref: DHBA:266441713 xref: FMA:71248 xref: HBA:9203 -xref: MESH:D014278 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D014278 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2021 xref: UMLS:C0040999 {source="BIRNLEX:4096"} xref: Wikipedia:Trigeminal_nerve_nuclei @@ -286371,7 +290158,7 @@ synonym: "organ field" RELATED [] xref: AEO:0000170 xref: EFO:0001649 xref: EHDAA2:0003170 -xref: FBbt:00005426 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005426 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: Wikipedia:Anlage_(biology) is_a: UBERON:0000479 {source="FBbt"} ! tissue is_a: UBERON:0005423 {source="AEO", source="FBbt"} ! developing anatomical structure @@ -286498,10 +290285,10 @@ name: spinothalamic tract def: "A tract that originates from neurons in the spinal central gray and projects to various somatosensory nuclei of the thalamus. It is formed in the medulla by merger of the anterior spinothalamic tract and lateral spinothalamic tract (adapted from Braininfo.org)." [NLXANAT:1010017] xref: BAMS:spth xref: BAMS:stt -xref: BTO:0006128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:12789 xref: MBA:871 -xref: MESH:D013133 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013133 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: neuronames:2058 xref: NLXANAT:1010017 xref: SCTID:280417000 @@ -287538,9 +291325,9 @@ is_a: UBERON:0003567 ! abdomen connective tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000916 ! abdomen -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cindyJax -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/paulacalipho +property_value: dc:contributor https://github.com/cindyJax +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/paulacalipho [Term] id: UBERON:0007809 @@ -288034,9 +291821,9 @@ disjoint_from: UBERON:0010372 ! uncinate process of ethmoid disjoint_from: UBERON:0010373 ! uncinate process of pancreas relationship: never_in_taxon NCBITaxon:8827 {source="PMID:15755883"} ! Anhimidae relationship: part_of UBERON:0010388 {source="ISBN:0073040584"} ! proximal segment of rib +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Posteriorly directed process (occasionally directed anteriorly) usually associated with the rib (sometimes with the transverse process) of the third vertebra; they provide the origin of the mm serratus superior, medius, and inferior.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000741", ontology="AAO", source="AAO:Pugener_2002"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0007844 @@ -288412,10 +292199,10 @@ relationship: has_part CL:0000312 ! keratinocyte relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0001705 {source="MA"} ! nail relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/rfoulger property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/9/9f/Fingernail_label.jpg" xsd:anyURI property_value: external_ontology_notes "in FMA, the nail is the nail plate" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/rfoulger [Term] id: UBERON:0008199 @@ -288636,7 +292423,7 @@ xref: BTO:0002120 is_a: UBERON:0004921 ! subdivision of digestive tract relationship: only_in_taxon NCBITaxon:7586 ! Echinodermata relationship: part_of UBERON:0001007 ! digestive system -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0008250 @@ -288697,11 +292484,11 @@ is_a: UBERON:0035561 ! styliform element intersection_of: UBERON:0035561 ! styliform element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/balhoff +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky property_value: external_definition "shaft of skeletal tissue that articulates with the lateral border of the carpus." xsd:string {source="ISBN:0226313379"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/balhoff -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky [Term] id: UBERON:0008255 @@ -288855,7 +292642,7 @@ xref: EMAPA:35679 xref: FMA:56665 xref: GAID:1259 xref: MA:0002467 -xref: MESH:D010513 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D010513 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:245775004 xref: Wikipedia:Periodontal_fiber is_a: UBERON:0008846 {source="FMA-moved"} ! skeletal ligament @@ -288866,12 +292653,12 @@ relationship: develops_from UBERON:0002342 {is_entailed="true", source="https:// relationship: develops_from UBERON:0008969 {source="PMID:19767574", source="Wikipedia:Dental_follicle"} ! dental follicle relationship: part_of UBERON:0001758 {source="BTO"} ! periodontium relationship: seeAlso FMA:76870 +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/dc/The_Periodontium.jpg" xsd:anyURI property_value: external_definition "The collagen fibers, running from the cementum to the alveolar bone, that suspend a tooth in its socket; they include apical, oblique, horizontal, and alveolar crest fibers, indicating that the orientation of the fibers varies at different levels[http://www.drugs.com/dict/desmodentium.html]." xsd:string {source="http://www.drugs.com/dict/desmodentium.html"} property_value: external_definition "The fibrous connective tissue that surrounds the root of a tooth, separating it from and attaching it to the alveolar bone. It extends from the base of the gingival mucosa to the fundus of the bony socket, and its main function is to hold the tooth in its socket[BTO]. It consist of cells, extracellular compartment of fibers. The cells are fibroblast, epithelial, undifferentiated mesenchymal cells, bone and cementum cells. The extracellular compartment consists of collagen fibers bundles embedded in ground substance. The PDL substance has been estimated to be 70% water and is thought to have a significant effect on the tooth's ability to withstand stress loads[WP][BTO:0001020, Wikipedia:Periodontal_fiber, https://github.com/obophenotype/uberon/issues/21]." xsd:string {source="Wikipedia:Periodontal_fiber"} property_value: external_ontology_notes "FMA treats periodontium and periodontal ligament as the same; it has a separate class desmodentium, which we place here even though it is classified as fetal in FMA" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan [Term] id: UBERON:0008267 @@ -288893,7 +292680,7 @@ id: UBERON:0008269 name: nacre def: "An organic-inorganic composite material produced by some mollusks as an inner shell layer; it is also what makes up pearls. It is very strong, resilient, and iridescent. Nacre is found in some ancient lineages of bivalve gastropod and cephalopod. The inner layer in the great majority of mollusk shells is porcellaneous, not nacreous, frequently resulting in a non-iridescent shine or less commonly in non-nacreous iridescence such as flame structure (e.g. conch pearl). Pearls and the inside layer of pearl oyster and freshwater pearl mussel shells are made of nacre. Many other families of mollusk also have a nacreous inner shell layer, including marine gastropods such as the Haliotidae, the Trochidae and the Turbinidae. Nacre is composed of hexagonal platelets of aragonite (a form of calcium carbonate) 10-20 µm wide and 0.5 µm thick arranged in a continuous parallel lamina. These layers are separated by sheets of organic matrix composed of elastic biopolymers (such as chitin, lustrin and silk-like proteins)[WP]." [Wikipedia:Nacre] synonym: "mother of pearl" EXACT [Wikipedia:Nacre] -xref: MESH:D060734 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060734 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Nacre is_a: UBERON:0000463 ! organism substance is_a: UBERON:0004755 ! skeletal tissue @@ -288939,7 +292726,7 @@ synonym: "dorsal armor" RELATED [] synonym: "dorsal shell" RELATED [] synonym: "upper shell" RELATED [] xref: BTO:0001701 -xref: MESH:D060105 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D060105 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:33620004 xref: Wikipedia:Carapace#Turtles_and_tortoises is_a: UBERON:0000075 ! subdivision of skeletal system @@ -290538,6 +294325,8 @@ relationship: part_of UBERON:0001737 {source="FMA"} ! larynx relationship: part_of UBERON:0008576 {source="FEED:rd", source="Wikipedia"} ! thyro-arytenoid relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: external_ontology_notes "in FMA this is not placed under thyro-arytenoid but almost all sources consider this to be the case (confirmed with FEED:rd)" xsd:string {external_ontology="FMA"} [Term] @@ -291142,10 +294931,22 @@ is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.0/assets/VH_F_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.1/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.2/assets/VH_F_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-left/v1.3/assets/3d-vh-f-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.0/assets/VH_F_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.1/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.2/assets/VH_F_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-female-right/v1.3/assets/3d-vh-f-kidney-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.0/assets/VH_M_Kidney_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.1/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.2/assets/VH_M_Kidney_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-left/v1.3/assets/3d-vh-m-kidney-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.0/assets/VH_M_Kidney_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.1/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.2/assets/VH_M_Kidney_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/kidney-male-right/v1.3/assets/3d-vh-m-kidney-r.glb" xsd:anyURI [Term] id: UBERON:0008772 @@ -291644,6 +295445,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/4/4a/Gr id: UBERON:0008810 name: nasopalatine nerve def: "A branch of that maxillary nerve that innervates the mucous membrane of the hard palate." [http://medical-dictionary.thefreedictionary.com/nasopalatine+nerve, UBERON:cjm] +subset: human_reference_atlas synonym: "naso-palatine nerve" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine" RELATED [Wikipedia:Nasopalatine_nerve] synonym: "nasopalatine nerves" RELATED [Wikipedia:Nasopalatine_nerve] @@ -291659,6 +295461,7 @@ intersection_of: innervates UBERON:0005046 ! mucosa of hard palate relationship: branching_part_of UBERON:0000377 ! maxillary nerve relationship: innervates UBERON:0005046 ! mucosa of hard palate relationship: part_of UBERON:0000377 ! maxillary nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray858.png" xsd:anyURI [Term] @@ -291671,7 +295474,7 @@ synonym: "aedeagus" NARROW SENSU [FBbt:00004850] synonym: "copulatory organ" RELATED [] synonym: "penis" NARROW [] xref: AAO:0010255 -xref: FBbt:00004850 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004850 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: HAO:0000091 xref: TAO:0002036 xref: TGMA:0000585 @@ -291760,7 +295563,7 @@ name: embryonic head def: "A head that is part of a embryo." [OBOL:automatic] subset: non_informative xref: CALOHA:TS-0246 -xref: FBbt:00000155 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000155 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:293011 is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head @@ -291897,7 +295700,7 @@ synonym: "type II pneumocyte secretion" EXACT [] xref: EMAPA:36551 xref: FMA:62780 xref: MA:0002534 -xref: MESH:D011663 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D011663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C13273 xref: UMLS:C0034085 {source="ncithesaurus:Lung_Surfactant"} xref: Wikipedia:Pulmonary_surfactant @@ -292732,8 +296535,14 @@ is_a: UBERON:0001874 ! putamen intersection_of: UBERON:0001874 ! putamen intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere relationship: part_of UBERON:0002812 ! left cerebral hemisphere -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0008885 @@ -292745,8 +296554,14 @@ is_a: UBERON:0001874 ! putamen intersection_of: UBERON:0001874 ! putamen intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere relationship: part_of UBERON:0002813 ! right cerebral hemisphere -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0008886 @@ -292960,7 +296775,7 @@ synonym: "lateral line organ" BROAD [ZFA:0000243] synonym: "neuromast organ" EXACT [PHENOSCAPE:wd] synonym: "neuromasts" EXACT OMO:0003004 [ZFA:0000243] xref: AAO:0001004 -xref: BTO:0006219 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006219 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003513 xref: TAO:0000243 xref: ZFA:0000243 @@ -293244,8 +297059,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0008928 @@ -293256,8 +297071,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0008929 @@ -293268,8 +297083,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 relationship: part_of UBERON:0001795 ! inner plexiform layer of retina -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0008930 @@ -293552,8 +297367,14 @@ intersection_of: UBERON:0008948 ! upper lobe of lung intersection_of: part_of UBERON:0002168 ! left lung relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0002168 ! left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0008953 @@ -293578,8 +297399,14 @@ intersection_of: UBERON:0008949 ! lower lobe of lung intersection_of: part_of UBERON:0002168 ! left lung relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0002168 ! left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0008954 @@ -293760,7 +297587,7 @@ synonym: "tooth follicle" RELATED [BTO:0000337] xref: BTO:0000337 xref: EMAPA:35275 xref: MA:0003121 -xref: MESH:D003795 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D003795 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C34138 xref: SCTID:110975002 xref: Wikipedia:Dental_follicle @@ -293811,7 +297638,7 @@ synonym: "true apocrine gland" EXACT [] xref: BTO:0001162 xref: EMAPA:35141 xref: MA:0003040 -xref: MESH:D001050 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001050 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:361698000 xref: Wikipedia:Apocrine is_a: UBERON:0002365 ! exocrine gland @@ -294148,6 +297975,7 @@ relationship: part_of UBERON:0035549 ! vasculature of integument id: UBERON:0009009 name: carotid sinus nerve def: "A sensory branch of the glossopharyngeal nerve (CN IX) carrying signals from the baroceptors (blood pressure receptors) in the bifurcation of the carotid artery to the nucleus of the solitary tract (nucleus solitarius)." [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] +subset: human_reference_atlas synonym: "carotid branch of glossopharyngeal nerve" EXACT [FMA:53488] synonym: "Hering sinus nerve" EXACT [http://medical-dictionary.thefreedictionary.com/carotid+sinus+nerve] synonym: "ramus sinus carotici" EXACT OMO:0003011 [FMA:53488] @@ -294163,6 +297991,7 @@ relationship: branching_part_of UBERON:0001649 {source="FMA"} ! glossopharyngeal relationship: extends_fibers_into UBERON:0009050 ! nucleus of solitary tract relationship: has_part UBERON:0004019 ! baroreceptor relationship: part_of UBERON:0001649 ! glossopharyngeal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009010 @@ -294416,7 +298245,7 @@ synonym: "arteria circumflexa ilium profunda" RELATED OMO:0003011 [Wikipedia:Dee synonym: "deep iliac circumflex" RELATED [Wikipedia:Deep_circumflex_iliac_artery] synonym: "deep iliac circumflex artery" RELATED [Wikipedia:Deep_circumflex_iliac_artery] xref: FMA:20687 -xref: MESH:D007083 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D007083 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32432 xref: SCTID:181353005 xref: UMLS:C0226405 {source="ncithesaurus:Deep_Circumflex_Iliac_Artery"} @@ -294602,7 +298431,7 @@ property_value: editor_note "merge with SOC? See https://github.com/obophenotype id: UBERON:0009054 name: open circulatory system comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph -xref: FBbt:00005057 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005057 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001009 {source="GO"} ! circulatory system relationship: never_in_taxon NCBITaxon:33511 ! Deuterostomia @@ -294867,7 +298696,7 @@ synonym: "pregnant adult stage" RELATED [BTO:0004733] synonym: "pregnant organism" RELATED [] synonym: "pregnant stage" RELATED [BTO:0004733] xref: BTO:0004733 -xref: IDOMAL:0000443 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: IDOMAL:0000443 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} is_a: UBERON:0007023 ! adult organism intersection_of: UBERON:0007023 ! adult organism intersection_of: has_part UBERON:0000922 ! embryo @@ -295129,8 +298958,9 @@ id: UBERON:0009127 name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [PMID:20133851, ZFIN:curator] comment: Epibranchial ganglia orchestrate the development of the cranial neurogenic crest +subset: human_reference_atlas synonym: "epibranchial ganglia" EXACT OMO:0003004 [ZFA:0001555] -xref: BTO:0006250 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006250 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: TAO:0001555 xref: ZFA:0001555 is_a: UBERON:0001714 {source="ZFA"} ! cranial ganglion @@ -295138,6 +298968,7 @@ is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: develops_from UBERON:0003078 ! epibranchial placode relationship: develops_from UBERON:0003078 {source="NCBIBook:NBK53175"} ! epibranchial placode +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009128 @@ -296491,7 +300322,7 @@ relationship: part_of UBERON:0006241 ! future spinal cord id: UBERON:0009571 name: ventral midline def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, PMID:12075342] -xref: FBbt:00000093 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000093 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0001016 ! nervous system @@ -297020,6 +300851,7 @@ relationship: part_of UBERON:0006173 {is_inferred="true", source="https://github id: UBERON:0009623 name: spinal nerve root def: "The paired bundles of nerve fibers entering and leaving the spinal cord at each segment. The dorsal and ventral nerve roots join to form the mixed segmental spinal nerves. The dorsal roots are generally afferent, formed by the central projections of the spinal (dorsal root) ganglia sensory cells, and the ventral roots efferent, comprising the axons of spinal motor and autonomic preganglionic neurons. There are, however, some exceptions to this afferent/efferent rule." [MESH:A08.800.800.720.725] +subset: human_reference_atlas synonym: "root of spinal nerve" EXACT [FMA:14060] synonym: "spinal neural root" EXACT [FMA:14060] synonym: "spinal root" EXACT [BTO:0000883] @@ -297039,6 +300871,7 @@ relationship: contributes_to_morphology_of UBERON:0001780 ! spinal nerve relationship: contributes_to_morphology_of UBERON:0002240 ! spinal cord relationship: extends_fibers_into UBERON:0001780 ! spinal nerve relationship: extends_fibers_into UBERON:0002240 ! spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_ontology_notes "ZFA has part_of to spinal cord but this causes spatial disjointness violations (CNS/PNS)" xsd:string {external_ontology="ZFA"} property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd:string @@ -297046,6 +300879,7 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2644" xsd id: UBERON:0009624 name: lumbar nerve def: "The lumbar nerves are the five spinal nerves emerging from the lumbar vertebrae. They are divided into posterior and anterior divisions." [Wikipedia:Lumbar_nerves] +subset: human_reference_atlas synonym: "lumbar spinal nerve" EXACT [FMA:5861] synonym: "nervi lumbales" RELATED OMO:0003011 [Wikipedia:Lumbar_nerves] synonym: "nervus lumbalis" EXACT OMO:0003011 [FMA:5861, FMA:TA] @@ -297059,12 +300893,14 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0002792 ! lumbar spinal cord relationship: extends_fibers_into UBERON:0002792 ! lumbar spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] id: UBERON:0009625 name: sacral nerve def: "The five sacral nerves emerge from the sacrum. Although the vertebral components of the sacrum are fused into a single bone, the sacral vertebrae are still used to number the sacral nerves. Posteriorly, they emerge from the posterior sacral foramina, and form the posterior branches of sacral nerves. Anteriorly, they emerge from the anterior sacral foramina, and contribute to the sacral plexus (S1-S4) and coccygeal plexus." [Wikipedia:Sacral_nerves] +subset: human_reference_atlas synonym: "nervi sacrales" RELATED OMO:0003011 [Wikipedia:Sacral_nerves] synonym: "nervus sacralis" EXACT OMO:0003011 [FMA:5862, FMA:TA] synonym: "sacral spinal nerve" EXACT [FMA:5862] @@ -297078,6 +300914,7 @@ is_a: UBERON:0001780 ! spinal nerve intersection_of: UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0005843 ! sacral spinal cord relationship: extends_fibers_into UBERON:0005843 ! sacral spinal cord +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d1/Gray802.png" xsd:anyURI [Term] @@ -297662,6 +301499,7 @@ property_value: homology_notes "Cranial nerves XI and XII evolved in the common id: UBERON:0009675 name: chorda tympani branch of facial nerve def: "The chorda tympani is a nerve that branches from the facial nerve (cranial nerve VII) inside the facial canal, just before the facial nerve exits the skull via the stylomastoid foramen. Chorda tympani is a branch of the facial nerve (the seventh cranial nerve) that serves the taste buds in the front of the tongue, runs through the middle ear, and carries taste messages to the brain. The chorda tympani is part of one of three cranial nerves that are involved in taste. The taste system involves a complicated feedback loop, with each nerve acting to inhibit the signals of other nerves. The chorda tympani appears to exert a particularly strong inhibitory influence on other taste nerves, as well as on pain fibers in the tongue. When the chorda tympani is damaged, its inhibitory function is disrupted, leading to less inhibited activity in the other nerves." [Wikipedia:Chorda_tympani] +subset: human_reference_atlas synonym: "chorda tympani" EXACT [FMA:53228] synonym: "chorda tympani nerve" RELATED [Wikipedia:Chorda_tympani] synonym: "corda tympani nerve" RELATED [Wikipedia:Chorda_tympani] @@ -297683,6 +301521,7 @@ is_a: UBERON:0001785 ! cranial nerve relationship: branching_part_of UBERON:0001647 {source="EHDAA2"} ! facial nerve relationship: innervates UBERON:0001727 ! taste bud relationship: part_of UBERON:0001647 ! facial nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0009676 @@ -297766,8 +301605,14 @@ xref: Wikipedia:Middle_cardiac_vein is_a: UBERON:0004148 {source="FMA"} ! cardiac vein relationship: connected_to UBERON:0005438 ! coronary sinus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0009688 @@ -298038,8 +301883,8 @@ xref: CP:0001040 is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009732 @@ -298050,8 +301895,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008926 ! sublaminar layer S5 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009733 @@ -298062,8 +301907,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009734 @@ -298074,8 +301919,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009735 @@ -298086,8 +301931,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009736 @@ -298098,8 +301943,8 @@ is_a: UBERON:0008921 ! substratum of layer of retina union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 union_of: UBERON:0008926 ! sublaminar layer S5 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009737 @@ -298111,8 +301956,8 @@ union_of: UBERON:0008922 ! sublaminar layer S1 union_of: UBERON:0008923 ! sublaminar layer S2 union_of: UBERON:0008924 ! sublaminar layer S3 union_of: UBERON:0008925 ! sublaminar layer S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009738 @@ -298126,8 +301971,8 @@ intersection_of: overlaps UBERON:0008923 ! sublaminar layer S2 relationship: overlaps UBERON:0008922 ! sublaminar layer S1 relationship: overlaps UBERON:0008923 ! sublaminar layer S2 relationship: part_of UBERON:0008927 ! sublaminar layers S1 or S2 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009739 @@ -298141,8 +301986,8 @@ intersection_of: overlaps UBERON:0008925 ! sublaminar layer S4 relationship: overlaps UBERON:0008924 ! sublaminar layer S3 relationship: overlaps UBERON:0008925 ! sublaminar layer S4 relationship: part_of UBERON:0009731 ! sublaminar layers S3 or S4 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009740 @@ -298315,7 +302160,7 @@ property_value: location_notes "Lipid-rich, collagen fiber-laced blubber compris id: UBERON:0009755 name: spermaceti def: "Wax present in the head cavities of the sperm whale." [Wikipedia:Spermaceti] -xref: MESH:C009301 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:C009301 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Spermaceti is_a: UBERON:0000463 ! organism substance relationship: only_in_taxon NCBITaxon:9753 ! Physeter @@ -298338,7 +302183,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/3/3b/Sp id: UBERON:0009757 name: ambergris def: "A biliary secretion of the intestines of the sperm whale." [Wikipedia:Ambergris] -xref: MESH:D018648 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D018648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Ambergris is_a: UBERON:0000463 ! organism substance relationship: only_in_taxon NCBITaxon:9753 ! Physeter @@ -298768,8 +302613,8 @@ intersection_of: overlaps UBERON:0008926 ! sublaminar layer S5 relationship: overlaps UBERON:0008925 ! sublaminar layer S4 relationship: overlaps UBERON:0008926 ! sublaminar layer S5 relationship: part_of UBERON:0008929 ! sublaminar layers S4 or S5 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009852 @@ -298782,8 +302627,8 @@ intersection_of: overlaps UBERON:0008924 ! sublaminar layer S3 relationship: overlaps UBERON:0008923 ! sublaminar layer S2 relationship: overlaps UBERON:0008924 ! sublaminar layer S3 relationship: part_of UBERON:0008928 ! sublaminar layers S2 or S3 -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0009853 @@ -298809,7 +302654,9 @@ relationship: continuous_with UBERON:0003889 ! fallopian tube relationship: continuous_with UBERON:0013759 ! internal cervical os relationship: part_of UBERON:0000995 {source="FMA"} ! uterus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI [Term] id: UBERON:0009854 @@ -298817,7 +302664,7 @@ name: digestive tract diverticulum def: "Branch or outpocketing of the digestive tract." [https://orcid.org/0000-0002-6601-2165] synonym: "diverticulum of gut" RELATED [FBbt:00100316] synonym: "intestinal pouch" RELATED [] -xref: FBbt:00100316 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100316 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0009856 ! sac intersection_of: UBERON:0009856 ! sac @@ -299106,12 +302953,12 @@ relationship: part_of UBERON:0001445 ! skeleton of pes relationship: part_of UBERON:0004454 ! tarsal region relationship: proximally_connected_to UBERON:0010720 ! hindlimb zeugopod skeleton relationship: skeleton_of UBERON:0004454 ! tarsal region +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "Segment of the leg corresponding to the tarsus. It consists of several elements that articulate with the tibia and fibula at one end and the metatarsals at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000220", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "we assume MA:tarsus belongs here, as there is a distinct class MA:ankle, with the tarsal bone being part of the former. XAO:tarsus is part of the hindlimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent." xsd:string {external_ontology="MA"} property_value: homology_notes "The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001160", ontology="VHOG", source="DOI:10.1002/jez.1100 Wagner GP, Chiu C, The tetrapod limb: A hypothesis on its origin. J Exp Zool (Mol Dev Evol) (2001)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly property_value: taxon_notes "Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present" xsd:string {source="PHENOSCAPE:ad"} [Term] @@ -299145,12 +302992,12 @@ relationship: part_of UBERON:0001442 ! skeleton of manus relationship: part_of UBERON:0004452 ! carpal region relationship: proximally_connected_to UBERON:0010703 ! forelimb zeugopod skeleton relationship: skeleton_of UBERON:0004452 ! carpal region +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/58/Carpus.svg" xsd:anyURI property_value: external_definition "Segment of the forearm corresponding to the carpus. It consists of several elements that articulate with the radius and ulna at one end and the metacarpals at the other end.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000201", ontology="AAO", source="AAO:LAP"} property_value: external_ontology_notes "we assume MA:carpus belongs here, as there is a distinct class MA:wrist, with the carpal bone being part of the former. XAO:carpus is part of the forelimb skeleton. FMA set-of class lacks definition but we assume this to be equivalent." xsd:string {external_ontology="MA"} property_value: homology_notes "The three main outgroup taxa of tetrapods, panderichthyids, osteolepiforms, and rhizodontids, have endoskeletal elements corresponding to the stylo- and zeugopodial elements in a tetrapod limb. In addition, there are elements that share the position and possibly the developmental derivation of the ulnare and the intermedium. From these observations, most authors have concluded that the stylo- and zeugopodial elements as well as the proximal mesopodial elements have counterparts in the fins of tetrapod ancestors, but there are no indications of wrist or ankle joints.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001161", ontology="VHOG", source="DOI:10.1002/jez.1100 Wagner GP, Chiu C, The tetrapod limb: A hypothesis on its origin. J Exp Zool (Mol Dev Evol) (2001)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "Not always associated with digits, in sarcopterygians the ulnare is present without true digits being formed, though their homologous radial elements are present[PHENOSCAPE:ad]." xsd:string {source="Wikipedia:Carpus#Evolutionary_variations"} property_value: taxon_notes "The structure of the carpus varies widely between different groups of tetrapods, even among those that retain the full set of five digits. In primitive fossil amphibians, such as Eryops, the carpus consists of three rows of bones; a proximal row of three carpals, a second row of four bones, and a distal row of five bones. The proximal carpals are referred to as the radiale, intermediale, and ulnare, after their proximal articulations, and are homologous with the scaphoid, lunate, and triquetal bones respectively. The remaining bones are simply numbered, as the first to fourth centralia (singular: centrale), and the first to fifth distal carpals. Primitively, each of the distal bones appears to have articulated with a single metacarpal. However, the vast majority of later vertebrates, including modern amphibians, have undergone varying degrees of loss and fusion of these primitive bones, resulting in a smaller number of carpals. Almost all mammals and reptiles, for example, have lost the fifth distal carpal, and have only a single centrale - and even this is missing in humans. The pisiform bone is somewhat unusual, in that it first appears in primitive reptiles, and is never found in amphibians. Because many tetrapods have less than five digits on the forelimb, even greater degrees of fusion are common, and a huge array of different possible combinations are found. The wing of a modern bird, for example, has only two remaining carpals; the radiale (the scaphoid of mammals) and a bone formed from the fusion of four of the distal carpals. In some macropods, the scaphoid and lunar bones are fused into the scaphollunar bone" xsd:string @@ -299610,7 +303457,7 @@ name: main olfactory bulb def: "The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP]." [Wikipedia:Olfactory_bulb#Main_olfactory_bulb] xref: BAMS:MOB xref: MBA:507 -xref: MESH:D009830 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D009830 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: Wikipedia:Olfactory_bulb#Main_olfactory_bulb is_a: UBERON:0002616 ! regional part of brain relationship: mutually_spatially_disjoint_with UBERON:0002266 {source="ABA"} ! anterior olfactory nucleus @@ -300252,7 +304099,7 @@ subset: common_anatomy subset: upper_level synonym: "multicellular structure" EXACT [FBbt:00100313] xref: CARO:0010000 -xref: FBbt:00100313 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100313 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: has_quality PATO:0001993 ! multicellular @@ -300269,7 +304116,7 @@ def: "A small cluster of cells of various types which form a discrete structure, comment: Examples include arthropod sensilla. subset: upper_level xref: CARO:0010001 -xref: FBbt:00007229 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007229 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000062 {source="CARO"} ! organ is_a: UBERON:0034922 {source="CARO"} ! cell cluster disjoint_from: UBERON:0011216 {source="FBbt"} ! organ system subdivision @@ -302520,8 +306367,14 @@ is_a: UBERON:0001771 ! pupil intersection_of: UBERON:0001771 ! pupil intersection_of: part_of UBERON:0004548 ! left eye relationship: part_of UBERON:0004548 ! left eye -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.3/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.3/assets/3d-vh-m-eye-l.glb" xsd:anyURI [Term] id: UBERON:0010224 @@ -302534,8 +306387,14 @@ is_a: UBERON:0001771 ! pupil intersection_of: UBERON:0001771 ! pupil intersection_of: part_of UBERON:0004549 ! right eye relationship: part_of UBERON:0004549 ! right eye -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.3/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.3/assets/3d-vh-m-eye-r.glb" xsd:anyURI [Term] id: UBERON:0010225 @@ -303099,7 +306958,7 @@ id: UBERON:0010264 name: hepatopancreas def: "An organ of the digestive tract of arthropods and molluscs. It provides the functions which in mammals are provided separately by the liver and pancreas, including the production of digestive enzymes, and absorption of digested food." [Wikipedia:Hepatopancreas] xref: BTO:0000597 -xref: MESH:D043143 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D043143 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Hepatopancreas is_a: UBERON:0003408 ! gland of digestive tract is_a: UBERON:0006925 {source="BTO"} ! digestive system gland @@ -303498,7 +307357,7 @@ subset: efo_slim synonym: "amnion-serosa" RELATED [BTO:0004800] xref: BTO:0004800 xref: EFO:0000250 -xref: FBbt:00000095 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000095 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010303 {source="DOI:10.1073/pnas.0709145105"} ! extraembryonic epithelium relationship: only_in_taxon NCBITaxon:6656 {notes="Cyclorrhapha", source="DOI:10.1073/pnas.0709145105"} ! Arthropoda property_value: editor_note "May be obsoleted once added to insect ontology. Coordinate with cell type in CL" xsd:string @@ -304110,7 +307969,7 @@ def: "Nonsynovial joint in which the articulating bones are connected by bone. E synonym: "bony union" EXACT [FMA:7499] synonym: "junctura ossea" EXACT OMO:0003011 [FMA:TA] xref: FMA:7499 -xref: MESH:D013580 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013580 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:1216008 xref: ZFA:0005610 is_a: UBERON:0011134 {source="FMA"} ! nonsynovial joint @@ -304310,8 +308169,13 @@ relationship: develops_from UBERON:0003924 {source="Wikipedia"} ! ventral pancre relationship: part_of UBERON:0001069 {source="FMA"} ! head of pancreas relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/f/fe/Illu_pancreas_duodenum.jpg" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.0/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.1/assets/VH_F_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-female/v1.3/assets/3d-vh-f-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.0/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.1/assets/VH_M_Pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.2/assets/3d-vh-m-pancreas.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/pancreas-male/v1.3/assets/3d-vh-m-pancreas.glb" xsd:anyURI [Term] id: UBERON:0010375 @@ -304574,8 +308438,8 @@ intersection_of: UBERON:0010422 ! primary nodular lymphoid tissue intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0010396 @@ -304591,8 +308455,16 @@ is_a: UBERON:0001473 ! lymphatic vessel relationship: contributes_to_morphology_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010397 @@ -304606,8 +308478,16 @@ xref: MA:0000749 xref: Wikipedia:Efferent_lymph_vessel is_a: UBERON:0001473 ! lymphatic vessel relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010398 @@ -304916,8 +308796,16 @@ intersection_of: UBERON:0010393 ! T cell domain intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0002006 {source="MP"} ! cortex of lymph node -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010418 @@ -304973,8 +308861,8 @@ relationship: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0010753 {source="MA"} ! lymph node secondary follicle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounds UBERON:0009039 ! lymph node germinal center -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0010421 @@ -305002,8 +308890,8 @@ relationship: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0004042 {source="CL:tm"} ! spleen secondary B follicle relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: surrounds UBERON:0005196 ! spleen germinal center -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0010422 @@ -305109,10 +308997,22 @@ is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 ! ciliary body property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/Gray875.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-eye-r.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.0/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.1/assets/VH_F_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.2/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-left/v1.3/assets/3d-vh-f-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.0/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.1/assets/VH_F_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.2/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-female-right/v1.3/assets/3d-vh-f-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.0/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.1/assets/VH_M_Eye_L.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.2/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-left/v1.3/assets/3d-vh-m-eye-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.0/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.1/assets/VH_M_Eye_R.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.2/assets/3d-vh-m-eye-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/eye-male-right/v1.3/assets/3d-vh-m-eye-r.glb" xsd:anyURI [Term] id: UBERON:0010428 @@ -307027,7 +310927,7 @@ relationship: part_of UBERON:0002387 ! pes id: UBERON:0010725 name: accessory navicular bone def: "An accessory bone of the pes that occasionally develops abnormally in front of the ankle towards the inside of the pes. This bone may be present in approximately 2.5% of the general population and is usually asymptomatic." [Wikipedia:Accessory_navicular_bone] -xref: MESH:C536002 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:C536002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:118496000 xref: Wikipedia:Accessory_navicular_bone is_a: UBERON:0005899 ! pes bone @@ -307295,9 +311195,9 @@ xref: Wikipedia:Wing_of_ilium is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray235.png" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "Often dorsally expanded in amniotes" xsd:string {source="ad"} [Term] @@ -307326,8 +311226,16 @@ intersection_of: UBERON:0000444 ! lymphoid follicle intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0002006 {notes="issues/7", source="MP-def"} ! cortex of lymph node -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_F_Lymph_Node.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-left/v1.0/assets/NIH_F_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female-right/v1.0/assets/NIH_F_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.1/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.2/assets/NIH_F_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-female/v1.3/assets/3d-nih-f-lymph-node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-left/v1.0/assets/NIH_M_Lymph_Node_Left.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male-right/v1.0/assets/NIH_M_Lymph_Node_Right.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.1/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.2/assets/NIH_M_Lymph_Node.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lymph-node-male/v1.3/assets/3d-nih-m-lymph-node.glb" xsd:anyURI [Term] id: UBERON:0010749 @@ -307510,7 +311418,7 @@ def: "A major subdivision of an organism that divides an organism along an axis subset: upper_level synonym: "appendage segment" EXACT [FBbt:00007018] synonym: "appendicular segment" EXACT [] -xref: FBbt:00007018 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000026 ! appendage @@ -308379,6 +312287,8 @@ xref: Wikipedia:Thyroepiglottic_muscle is_a: UBERON:0001568 {source="ncithesaurus"} ! muscle of larynx relationship: part_of UBERON:0008576 {source="FMA"} ! thyro-arytenoid property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Musculusthyreoarytenoideus.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: external_definition "Thexton, see notes from WG2.[FEED]" xsd:string {date_retrieved="2012-07-02", ontology="FEED", url="http://www.feedexp.org"} property_value: external_ontology_notes "not a distinct muscle in FMA" xsd:string {external_ontology="FMA"} @@ -308470,6 +312380,8 @@ relationship: has_muscle_origin UBERON:0002375 {source="dbpedia"} ! cricoid cart relationship: innervated_by UBERON:0003716 {source="dbpedia"} ! recurrent laryngeal nerve relationship: part_of UBERON:0001737 {source="FMA"} ! larynx property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/9/96/Gray959.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: editor_note "candidate for obsoletion. See https://github.com/obophenotype/uberon/issues/530" xsd:string property_value: seeAlso "https://github.com/obophenotype/uberon/issues/530" xsd:anyURI @@ -308874,6 +312786,8 @@ relationship: has_muscle_insertion UBERON:0001740 {notes="Arytenoid cartilage on relationship: has_muscle_origin UBERON:0001740 {notes="Arytenoid cartilage on one side", source="dbpedia"} ! arytenoid cartilage relationship: innervated_by UBERON:0003716 {notes="recurrent laryngeal branch of the vagus", source="dbpedia"} ! recurrent laryngeal nerve property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/5/52/Musculusarytenoideus.png" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.1/assets/VH_M_Lung.glb" xsd:anyURI property_value: editor_note "TODO - check child relationships" xsd:string [Term] @@ -309140,7 +313054,7 @@ def: "A cartilage element that is part of a splanchnocranium." [OBOL:automatic] subset: efo_slim synonym: "pharyngeal arch cartilages" EXACT OMO:0003004 [ZFA:0001460] synonym: "splanchnocranium cartilage" EXACT [ZFA:0001460] -xref: BTO:0006051 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006051 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0003689 xref: TAO:0001460 xref: ZFA:0001460 @@ -309519,9 +313433,9 @@ is_a: UBERON:0010912 {source="cjm"} ! subdivision of skeleton relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 relationship: part_of UBERON:0003277 ! skeleton of upper jaw relationship: part_of UBERON:0008895 {source="VHOG"} ! splanchnocranium +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: homology_notes "Subsequent vertebrate evolution has also involved major alterations to the pharynx; perhaps the most notable occurred with the evolution of the gnathostomes. This involved substantial modifications to the most anterior pharyngeal segments, with the jaw forming from the first, anterior, pharyngeal segment, while the second formed its supporting apparatus, the hyoid.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000511", ontology="VHOG", source="DOI:10.1046/j.1469-7580.2001.19910133.x Graham A. The development and evolution of the pharyngeal arches. J Anat (2001)", source="http://bgee.unil.ch/"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0011087 @@ -309627,6 +313541,7 @@ relationship: has_potential_to_develop_into UBERON:0002412 ! vertebra id: UBERON:0011096 name: lacrimal nerve def: "The lacrimal nerve is the smallest of the three branches of the ophthalmic division of the trigeminal nerve." [Wikipedia:Lacrimal_nerve] +subset: human_reference_atlas synonym: "nervus lacrimalis" EXACT OMO:0003011 [Wikipedia:Lacrimal_nerve] xref: FMA:52628 xref: NCIT:C32908 @@ -309639,6 +313554,7 @@ intersection_of: innervates UBERON:0001817 ! lacrimal gland relationship: branching_part_of UBERON:0000348 {source="FMA"} ! ophthalmic nerve relationship: innervates UBERON:0001817 ! lacrimal gland relationship: part_of UBERON:0000348 ! ophthalmic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011104 @@ -309788,7 +313704,7 @@ synonym: "proximal tibiofibular syndesmosis" RELATED [FMA:35184] synonym: "superior tibiofibular articulation" RELATED [Wikipedia:Superior_tibiofibular_joint] synonym: "tibiofibular joint" BROAD [Wikipedia:Superior_tibiofibular_joint] xref: FMA:35184 -xref: MESH:D007719 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D007719 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:182208008 xref: Wikipedia:Superior_tibiofibular_joint is_a: UBERON:0011112 ! tibiofibular joint @@ -309833,7 +313749,7 @@ synonym: "carpometacarpal" BROAD [Wikipedia:Carpometacarpal_joint] synonym: "carpometacarpal articulation" RELATED [Wikipedia:Carpometacarpal_joint] synonym: "CMJ" BROAD [Wikipedia:Carpometacarpal_joint] xref: FMA:35287 -xref: MESH:D052737 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D052737 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C32265 xref: SCTID:361842002 xref: UMLS:C0224620 {source="ncithesaurus:Carpometacarpal_Joint"} @@ -309971,7 +313887,7 @@ synonym: "intercarpal" RELATED [Wikipedia:Intercarpal_articulations] synonym: "intercarpal articulation" RELATED [Wikipedia:Intercarpal_articulations] synonym: "midcarpal articulation" RELATED [Wikipedia:Intercarpal_articulations] xref: FMA:35292 -xref: MESH:D050824 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D050824 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C32264 xref: SCTID:182176003 xref: UMLS:C1262468 {source="ncithesaurus:Carpal_Joint"} @@ -310055,7 +313971,7 @@ synonym: "post-cranial axial skeletal system" EXACT [] xref: FMA:302077 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system relationship: develops_from UBERON:0003089 {source="cjm"} ! sclerotome -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/docs/The-axial-skeleton" xsd:anyURI [Term] @@ -310469,7 +314385,7 @@ synonym: "femoropatellar joint" EXACT [] synonym: "patello femoral joint" EXACT [galen:PatelloFemoralJoint] xref: FMA:43574 xref: galen:PatelloFemoralJoint -xref: MESH:D057071 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D057071 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:182202009 is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 {source="FMA"} ! synovial limb joint @@ -310498,8 +314414,8 @@ is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003457 ! head bone is_a: UBERON:0008907 ! dermal bone relationship: part_of UBERON:0006813 {source="AAO"} ! nasal skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0011168 @@ -310847,8 +314763,11 @@ xref: Wikipedia:Ophthalmic_veins xref: XAO:0004169 is_a: UBERON:0009141 {source="EHDAA2-modified"} ! craniocervical region vein property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gray572.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0011192 @@ -310888,6 +314807,7 @@ property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/0/02/Gr id: UBERON:0011194 name: ophthalmic plexus def: "An autonomic plexus, entering the orbit in company with the ophthalmic artery, derived from the internal carotid plexus." [http://www.encyclo.co.uk/define/ophthalmic%20plexus] +subset: human_reference_atlas synonym: "ophthalmic nerve plexus" EXACT [] synonym: "ophthalmic plexus" EXACT [MA:0002185] synonym: "opthalmic plexus" EXACT [] @@ -310898,6 +314818,7 @@ xref: MA:0002185 xref: NCIT:C53057 xref: UMLS:C1709326 {source="ncithesaurus:Ophthalmic_Plexus"} is_a: UBERON:0001810 {source="ncithesaurus"} ! nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011195 @@ -310979,7 +314900,8 @@ is_a: UBERON:0000064 ! organ part is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001335 {source="FMA"} ! prostatic urethra property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/d/d4/Gray1153.png" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI property_value: editor_note "add df relations. Check mesopnephric duct" xsd:string [Term] @@ -311151,6 +315073,7 @@ xref: BIRNLEX:1456 xref: DHBA:12888 xref: DMBA:17748 xref: FMA:6213 +xref: HBA:9337 xref: ZFA:0007011 is_a: UBERON:0002211 ! nerve root intersection_of: UBERON:0002211 ! nerve root @@ -311191,7 +315114,7 @@ def: "A subdivision of an anatomical system." [http://orcid.org/0000-0002-6601-2 subset: common_anatomy subset: human_reference_atlas subset: upper_level -xref: FBbt:00007330 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007330 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: FMA:67509 xref: SCTID:91690000 is_a: UBERON:0010000 {source="FBbt"} ! multicellular anatomical structure @@ -311453,10 +315376,10 @@ intersection_of: UBERON:0011248 ! procoracoid element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0011247 ! procoracoid cartilage +property_value: dc:contributor https://github.com/alex-dececchi property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/7/79/P.gigas_forelimb.jpg" xsd:anyURI property_value: editor_note "VSAO sais that the procoracoid+coracoid are homologous to the teleost coracoid. Consider adding a separate class for posterior coracoid." xsd:string property_value: homology_notes "Kardong states that the procoracoid (or the anterior part of the procoracoid) is homologous to the coracoid, but this is controversial" xsd:string {is_about="UBERON:0004743", source="ISBN:0073040584"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi property_value: seeAlso "https://github.com/obophenotype/uberon/issues/119" xsd:anyURI property_value: taxon_notes "In primitive synapsis 3 centers develop in the shoulder: the dorsal center gives rise to the scapula and the two ventral centers produce an anterior coracoid (procoracoid) and posterior coracoid (coracoid)" xsd:string @@ -311480,9 +315403,9 @@ xref: AAO:0000760 is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0007831 ! pectoral girdle skeleton property_value: axiom_lost_from_external_ontology "relationship loss: part_of zonal element (AAO:0000936)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000760", ontology="AAO"} +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: external_definition "Cartilaginous, paired structures located on the anterolateral portions of the zonal area of the pectoral girdle.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000760", ontology="AAO", source="AAO:LAP"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0011249 @@ -312342,6 +316265,7 @@ relationship: innervates UBERON:0006562 ! pharynx id: UBERON:0011326 name: superior laryngeal nerve def: "The superior laryngeal nerve is a branch of the vagus nerve. It arises from the middle of the ganglion nodosum and in its course receives a branch from the superior cervical ganglion of the sympathetic. It descends, by the side of the pharynx, behind the internal carotid artery, and divides into two branches: external laryngeal nerve internal laryngeal nerve A superior laryngeal nerve palsy changes the pitch of the voice and causes an inability to make explosive sounds. If no recovery is evident three months after the palsy initially presents, the damage is most likely to be permanent. A bilateral palsy presents as a tiring and hoarse voice." [Wikipedia:Superior_laryngeal_nerve] +subset: human_reference_atlas synonym: "nervus laryngealis superior" EXACT [FMA:6239] synonym: "nervus laryngeus superior" EXACT OMO:0003011 [Wikipedia:Superior_laryngeal_nerve] synonym: "superior laryngeal branch of inferior vagal ganglion" EXACT [FMA:6239] @@ -312356,6 +316280,7 @@ relationship: branching_part_of UBERON:0001759 {source="FMA"} ! vagus nerve relationship: develops_from UBERON:0003115 {source="Wikipedia"} ! pharyngeal arch 4 relationship: innervates UBERON:0001737 ! larynx relationship: part_of UBERON:0001759 ! vagus nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011327 @@ -312878,7 +316803,7 @@ synonym: "nervus pudendales" EXACT OMO:0003011 [doi:10.1002/ca.23705] synonym: "pudenal nerve" RELATED [Wikipedia:Pudendal_nerve] synonym: "pudendal" BROAD [Wikipedia:Pudendal_nerve] xref: FMA:19037 -xref: MESH:D060525 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D060525 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:181057000 xref: Wikipedia:Pudendal_nerve is_a: UBERON:0003444 ! pelvis nerve @@ -315459,8 +319384,10 @@ is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:0013703 ! integumentary projection relationship: overlaps UBERON:0011827 ! areolar gland relationship: part_of UBERON:0002030 ! nipple -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI [Term] id: UBERON:0011830 @@ -315916,7 +319843,7 @@ id: UBERON:0011895 name: endomysium def: "A layer of connective tissue that ensheaths a muscle fiber and is composed mostly from reticular fibers. It also contains capillaries, nerves and lymphatics. The term cardiac skeleton is sometimes considered synonymous with endomysium, but sometimes it refers to the combination of the endomysium and perimysium." [Wikipedia:Endomysium] synonym: "fascia of muscle fiber" EXACT [FMA:9729] -xref: BTO:0006241 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006241 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:9729 xref: NCIT:C32517 xref: SCTID:91739007 @@ -316031,7 +319958,7 @@ def: "Plantaris is a vestigial structure and one of the superficial muscles of t subset: efo_slim synonym: "musculus plantaris" EXACT OMO:0003011 [] synonym: "plantaris" EXACT [FMA:22543] -xref: BTO:0006312 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006312 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: EFO:0001979 xref: EMAPA:36254 xref: FMA:22543 @@ -316198,6 +320125,7 @@ relationship: part_of UBERON:0002499 ! cochlear labyrinth id: UBERON:0011924 name: postganglionic autonomic fiber def: "Nerve fibers which project from cell bodies of autonomic ganglia to synapses on target organs." [MESH:A08.663.542.100, Wikipedia:Postganglionic_nerve_fibers] +subset: human_reference_atlas synonym: "postganglionic autonomic fibre" RELATED [] synonym: "postganglionic nerve fiber" EXACT [FMA:5924] xref: FMA:5924 @@ -316212,11 +320140,13 @@ intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: extends_fibers_into UBERON:0012453 ! nerve ending relationship: part_of UBERON:0034728 ! autonomic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011925 name: preganglionic autonomic fiber def: "Nerve fibers which project from the central nervous system to autonomic ganglia. In the sympathetic division most preganglionic fibers originate with neurons in the intermediolateral column of the spinal cord, exit via ventral roots from upper thoracic through lower lumbar segments, and project to the paravertebral ganglia; there they either terminate in synapses or continue through the splanchnic nerves to the prevertebral ganglia. In the parasympathetic division the fibers originate in neurons of the brain stem and sacral spinal cord. In both divisions the principal transmitter is acetylcholine but peptide cotransmitters may also be released." [MESH:A08.663.542.122, Wikipedia:Preganglionic_nerve_fibers] +subset: human_reference_atlas synonym: "preganglionic autonomic fibre" RELATED [] synonym: "preganglionic nerve fiber" EXACT [FMA:5923] xref: FMA:5923 @@ -316230,11 +320160,13 @@ intersection_of: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: extends_fibers_into UBERON:0001017 ! central nervous system relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: part_of UBERON:0034728 ! autonomic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011926 name: postganglionic sympathetic fiber def: "A noradrenergic or adrenergic axonal fiber projecting from a sympathetic ganglion to an effector organ." [MP:0008312] +subset: human_reference_atlas synonym: "postganglionic sympathetic fiber" RELATED [MESH:A08.663.542.075.800] synonym: "sympathetic postganglionic fiber" RELATED [MP:0008312] xref: MESH:D017779 @@ -316249,6 +320181,7 @@ intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending relationship: extends_fibers_into UBERON:0001806 ! sympathetic ganglion relationship: extends_fibers_into UBERON:0012453 ! nerve ending relationship: part_of UBERON:0034729 ! sympathetic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011927 @@ -316268,6 +320201,7 @@ relationship: part_of UBERON:0034729 ! sympathetic nerve id: UBERON:0011929 name: postganglionic parasympathetic fiber def: "A cholinergic axonal fiber projecting from a parasympathetic ganglion to an effector organ." [MP:0008313] +subset: human_reference_atlas synonym: "parasympathetic postganglionic fiber" RELATED [MP:0008313] xref: MESH:D017777 xref: NCIT:C12649 @@ -316280,6 +320214,7 @@ intersection_of: extends_fibers_into UBERON:0012453 ! nerve ending relationship: extends_fibers_into UBERON:0001808 ! parasympathetic ganglion relationship: extends_fibers_into UBERON:0012453 ! nerve ending relationship: part_of UBERON:0004293 ! parasympathetic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0011930 @@ -317156,8 +321091,14 @@ is_a: UBERON:0003405 ! lobar bronchus of left lung intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0008952 ! upper lobe of left lung relationship: part_of UBERON:0008952 ! upper lobe of left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0012066 @@ -317173,8 +321114,14 @@ is_a: UBERON:0003405 ! lobar bronchus of left lung intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0008953 ! lower lobe of left lung relationship: part_of UBERON:0008953 ! lower lobe of left lung -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.1/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.2/assets/VH_F_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.3/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-female/v1.4/assets/3d-vh-f-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.0/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.2/assets/VH_M_Lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.3/assets/3d-vh-m-lung.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/lung-male/v1.4/assets/3d-vh-m-lung.glb" xsd:anyURI [Term] id: UBERON:0012067 @@ -317747,8 +321694,8 @@ relationship: has_part UBERON:0000009 ! submucosa relationship: has_part UBERON:0000344 ! mucosa relationship: has_part UBERON:0002072 ! hypodermis relationship: has_part UBERON:0002097 ! skin of body -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mcourtot +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mcourtot [Term] id: UBERON:0012126 @@ -317794,7 +321741,7 @@ xref: FMA:59518 xref: SCTID:361926005 is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0007827 {source="FMA"} ! external nose -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0012129 @@ -317838,9 +321785,9 @@ intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0015077 ! centrale cartilage property_value: curator_notes "This term corresponds both to the navicular bone in the pes and the similar central carpals in the manus" xsd:string +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/cmungall property_value: external_ontology_notes "the FMA term is under 'general anatomical term'." xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall [Term] id: UBERON:0012132 @@ -318540,8 +322487,8 @@ relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis id: UBERON:0012245 name: silk def: "A protein fiber composed mainly of fibroin and produced by certain arthropods[WP,modified]." [Wikipedia:Silk] -xref: BTO:0002854 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} -xref: MESH:D047011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0002854 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D047011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SPD:0000318 xref: Wikipedia:Silk is_a: UBERON:0000463 {source="SPD"} ! organism substance @@ -319056,9 +323003,9 @@ xref: Wikipedia:Polarity_in_embryogenesis is_a: UBERON:0002050 ! embryonic structure relationship: existence_starts_during UBERON:0000106 {source="XAO"} ! zygote stage property_value: curator_notes "Like many of the early_development classes in this ontology, this class requires review for its applicability across vertebrates. See the tracker item for further discussion." xsd:string +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/5/5e/Oocyte_Poles.jpg" xsd:anyURI -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly [Term] id: UBERON:0012287 @@ -319370,8 +323317,8 @@ synonym: "lateral cervical node" EXACT [FMA:61232] xref: FMA:61232 xref: SCTID:167763000 is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0012307 @@ -319382,8 +323329,8 @@ xref: FMA:61230 xref: SCTID:168259009 xref: Wikipedia:Anterior_cervical_lymph_nodes is_a: UBERON:0002429 {source="FMA"} ! cervical lymph node -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/tmeehan +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/tmeehan [Term] id: UBERON:0012308 @@ -319628,7 +323575,7 @@ name: retrocerebral complex def: "Corpora allata with Corpora cardiaca form the retrocerebral complex, a neurosecretory organ." [BTO:0001803] comment: will be ceded to arthropod anatomy ontology xref: BTO:0001803 -xref: FBbt:00001718 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001718 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002368 {source="BTO"} ! endocrine gland relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -320853,8 +324800,12 @@ is_a: UBERON:0013765 ! digestive system element relationship: connects UBERON:0002107 ! liver relationship: connects UBERON:0002114 ! duodenum relationship: part_of UBERON:0002399 {source="FMA"} ! lesser omentum -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0012473 @@ -321840,8 +325791,12 @@ relationship: attaches_to UBERON:0001103 ! diaphragm relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum relationship: part_of UBERON:0002095 {source="FMA-modified"} ! mesentery -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0013139 @@ -322765,7 +326720,7 @@ synonym: "rete mirabilia" RELATED [Wikipedia:Rete_mirabile] synonym: "rete mirabilis" RELATED [Wikipedia:Rete_mirabile] synonym: "retie mirabilia" RELATED OMO:0003004 [Wikipedia:Rete_mirabile] synonym: "wonderful net" RELATED [Wikipedia:Rete_mirabile] -xref: BTO:0006363 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006363 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:76728 xref: Wikipedia:Rete_mirabile is_a: UBERON:0002049 ! vasculature @@ -323351,7 +327306,7 @@ synonym: "fossa infratemporalis" RELATED [Wikipedia:Infratemporal_fossa] synonym: "infratemporal" RELATED [Wikipedia:Infratemporal_fossa] synonym: "pterygomaxillary fossa" RELATED [Wikipedia:Infratemporal_fossa] xref: FMA:75308 -xref: MESH:D000080884 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080884 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:260616009 xref: Wikipedia:Infratemporal_fossa is_a: UBERON:0004704 ! bone fossa @@ -325461,8 +329416,11 @@ is_a: UBERON:0004921 ! subdivision of digestive tract relationship: adjacent_to UBERON:0000945 ! stomach relationship: part_of UBERON:0002114 ! duodenum relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.1/assets/VH_F_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-female/v1.2/assets/3d-vh-f-small-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.0/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.1/assets/VH_M_Small_Intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/small-intestine-male/v1.2/assets/3d-vh-m-small-intestine.glb" xsd:anyURI [Term] id: UBERON:0013645 @@ -326621,7 +330579,7 @@ subset: pheno_slim synonym: "arterial blood" EXACT [FMA:83066] synonym: "blood in artery" EXACT [FMA:83066] synonym: "portion of arterial blood" EXACT [FMA:83066] -xref: BTO:0006188 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006188 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:83066 is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood @@ -326635,7 +330593,7 @@ def: "A blood that is part of a vein." [OBOL:automatic] synonym: "blood in vein" EXACT [FMA:83067] synonym: "portion of venous blood" EXACT [FMA:83067] synonym: "venous blood" EXACT [FMA:83067] -xref: BTO:0006187 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006187 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: FMA:83067 is_a: UBERON:0000178 ! blood intersection_of: UBERON:0000178 ! blood @@ -326682,7 +330640,9 @@ is_a: UBERON:0013758 ! cervical os intersection_of: UBERON:0013758 ! cervical os intersection_of: continuous_with UBERON:0009853 ! body of uterus relationship: continuous_with UBERON:0009853 ! body of uterus -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: external_definition "The internal orifice of the uterus (or internal orifice of the cervix uteri or internal os) is an interior narrowing of the uterine cavity. It corresponds to a slight constriction known as the isthmus that can be observed on the surface of the uterus about midway between the apex and base[Wikipedia:Internal_orifice_of_the_uterus]." xsd:string {source="Wikipedia:Internal_orifice_of_the_uterus"} [Term] @@ -326705,7 +330665,9 @@ relationship: connects UBERON:0000002 ! uterine cervix relationship: connects UBERON:0000996 ! vagina relationship: continuous_with UBERON:0000996 ! vagina relationship: part_of UBERON:0012249 ! ectocervix -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.0/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.1/assets/VH_F_Uterus.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/uterus-female/v1.2/assets/3d-vh-f-uterus.glb" xsd:anyURI property_value: external_definition "The external orifice of the uterus (or ostium of uterus, or external os) is a small, depressed, somewhat circular aperture on the rounded extremity of the vaginal portion of the cervix. Through this aperture, the cervical cavity communicates with that of the vagina. The external orifice is bounded by two lips, an anterior and a posterior. The anterior is shorter and thicker, though it projects lower than the posterior because of the slope of the cervix. Normally, both lips are in contact with the posterior vaginal wall. Prior to pregnancy, the external orifice has a rounded shape when viewed through the vaginal canal (as through a speculum). Following parturition, the orifice takes on an appearance more like a transverse slit or is 'H-shaped'[Wikipedia:External_orifice_of_the_uterus]." xsd:string {source="Wikipedia:External_orifice_of_the_uterus"} [Term] @@ -326870,7 +330832,8 @@ intersection_of: UBERON:0002030 ! nipple intersection_of: in_left_side_of UBERON:0013702 ! body proper relationship: in_left_side_of UBERON:0013702 ! body proper relationship: part_of UBERON:0013702 ! body proper -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -326885,7 +330848,8 @@ intersection_of: UBERON:0002030 ! nipple intersection_of: in_right_side_of UBERON:0013702 ! body proper relationship: in_right_side_of UBERON:0013702 ! body proper relationship: part_of UBERON:0013702 ! body proper -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -327116,7 +331080,7 @@ subset: efo_slim synonym: "embryonic body" RELATED [Wikipedia:Embryoid_body] xref: BTO:0001718 xref: EFO:0004988 -xref: MESH:D058732 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D058732 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Embryoid_body is_a: UBERON:0002050 {source="EFO"} ! embryonic structure relationship: composed_primarily_of CL:0002248 {source="Wikipedia"} ! pluripotent stem cell @@ -327427,7 +331391,7 @@ id: UBERON:0014398 name: respiratory muscle def: "Muscle that is part of the respiratory system." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim -xref: MESH:D012132 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D012132 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003831 ! respiratory system muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: capable_of_part_of GO:0007585 ! respiratory gaseous exchange by respiratory system @@ -327770,9 +331734,9 @@ relationship: capable_of_part_of NBO:0000412 {source="MP"} ! pupillary light ref relationship: part_of UBERON:0001944 ! pretectal region relationship: present_in_taxon NCBITaxon:7761 ! Myxiniformes relationship: present_in_taxon NCBITaxon:9255 ! Monotremata +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Any of the groups of neurons located between the thalamus and midbrain that receive binocular sensory input from retinal ganglion cells of the eyes and are responsible for maintaining the pupillary light reflex" xsd:string {source="MP:0009638"} property_value: external_ontology_notes "see notes for pretectal region. Note this is midbrain in FMA, midbrain (mesencephalon) in HBA, midbrain in DHBA" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "in hagfishes, there are two: the pretectal nucleus and the nucleus of the posterior commissure[ISBN:0471888893]" xsd:string [Term] @@ -327835,10 +331799,10 @@ relationship: bounding_layer_of UBERON:0002075 ! viscus relationship: located_in UBERON:0001179 ! peritoneal cavity relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002075 ! viscus +property_value: dc:contributor https://github.com/cindyJax +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/paulacalipho property_value: external_definition "Adipose tissue located inside the peritoneal cavity, packed in between internal organs and torso. An excess of visceral fat is known as central obesity, or belly fat, the pot belly or beer belly effect, in which the abdomen protrudes excessively[BTO:0004041]." xsd:string {source="BTO:0004041"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cindyJax -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/paulacalipho [Term] id: UBERON:0014455 @@ -327855,9 +331819,9 @@ intersection_of: part_of UBERON:0000916 ! abdomen intersection_of: part_of UBERON:0002072 ! hypodermis relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002072 ! hypodermis -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cindyJax -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/paulacalipho +property_value: dc:contributor https://github.com/cindyJax +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/paulacalipho [Term] id: UBERON:0014456 @@ -329572,8 +333536,14 @@ xref: UMLS:C1110643 {source="BIRNLEX:1399"} is_a: UBERON:0014640 ! occipital gyrus relationship: part_of UBERON:0002021 ! occipital lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0014609 @@ -329690,6 +333660,7 @@ xref: BAMS:c11n xref: BIRNLEX:1580 xref: DHBA:12883 xref: DMBA:17749 +xref: HBA:9340 xref: neuronames:703 {source="BIRNLEX:1580"} xref: SCTID:280187004 xref: Wikipedia:Cranial_root_of_accessory_nerves @@ -329782,7 +333753,7 @@ subset: human_reference_atlas synonym: "cervical spinal cord anterior horn" RELATED [BIRNLEX:1680] synonym: "cervical spinal cord ventral horn" EXACT HUMAN_PREFERRED [BIRNLEX:1680] xref: BIRNLEX:1680 -xref: MESH:D066151 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D066151 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: SCTID:174363005 xref: UMLS:C0228615 {source="BIRNLEX:1680"} xref: UMLS:C1278740 {source="BIRNLEX:1680"} @@ -330870,7 +334841,7 @@ def: "An anatomical structure consisting of multiple cell cluster organs, that h comment: Examples: compound eye; Johnston's organ. subset: upper_level xref: CARO:0010002 -xref: FBbt:00007230 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007230 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000062 ! organ relationship: composed_primarily_of UBERON:0010001 ! cell cluster organ relationship: has_component UBERON:0010001 {min_cardinality="2"} ! cell cluster organ @@ -332614,8 +336585,8 @@ union_of: UBERON:0001423 ! radius bone union_of: UBERON:0006286 ! radius cartilage element union_of: UBERON:0010846 ! radius pre-cartilage condensation relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015002 @@ -332641,8 +336612,8 @@ union_of: UBERON:0001424 ! ulna union_of: UBERON:0006306 ! ulna cartilage element union_of: UBERON:0010847 ! ulna pre-cartilage condensation relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015004 @@ -332655,8 +336626,8 @@ union_of: UBERON:0000979 ! tibia union_of: UBERON:0010849 ! tibia cartilage element union_of: UBERON:0010850 ! tibia pre-cartilage condensation relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015007 @@ -332757,8 +336728,8 @@ union_of: UBERON:0001446 ! fibula union_of: UBERON:0010851 ! fibula cartilage element union_of: UBERON:0010852 ! fibula pre-cartilage condensation relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/mellybelly +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/mellybelly [Term] id: UBERON:0015014 @@ -334115,6 +338086,10 @@ id: UBERON:0015134 name: main lactiferous duct xref: FMA:62102 is_a: UBERON:0001765 {source="FMA"} ! mammary duct +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI [Term] id: UBERON:0015135 @@ -334285,7 +338260,7 @@ intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0004088 ! orbital region relationship: part_of UBERON:0004088 ! orbital region relationship: part_of UBERON:0035639 {source="inferred"} ! ocular adnexa -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/cmungall property_value: taxon_notes "the only orbital gland found in anuran amphibians is either the Harderian or the lacrimal; if it is a lacrimal, then a progressive lateral migration of the lacrimal glands must occur through the amniotes[PMID:7559104]" xsd:string property_value: taxon_notes "the only orbital gland found in anuran amphibians is the Harderian[PMID:8843648]" xsd:string @@ -334454,7 +338429,7 @@ def: "Light reflecting layer found in a variety of different types of eye." [htt subset: functional_classification synonym: "tapetal layer" EXACT [] synonym: "tapetum layer" EXACT [] -xref: BTO:0001350 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001350 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SPD:0000343 is_a: UBERON:0000957 ! lamina relationship: has_quality PATO:0001297 ! reflectivity @@ -334673,7 +338648,7 @@ id: UBERON:0015203 name: non-connected functional system def: "An anatomical group whose component structures share a common function." [AEO:0000093, AEO:JB, FBbt:00007278, FBC:DOS] xref: AEO:0000093 -xref: FBbt:00007278 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007278 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034923 ! disconnected anatomical group [Term] @@ -334854,7 +338829,7 @@ def: "The caudal, pulsatile region of the dorsal vessel of the arthropod circula synonym: "adult heart" NARROW SENSU [FBbt:00003154, NCBITaxon:50557] synonym: "embryonic/larval heart" NARROW SENSU [FBbt:00001675, NCBITaxon:50557] synonym: "heart" RELATED SENSU [NCBITaxon:50557] -xref: FBbt:00003154 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003154 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} xref: SPD:0000130 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007100 ! primary circulatory organ @@ -334866,7 +338841,7 @@ id: UBERON:0015231 name: circulatory system dorsal vessel def: "A tube that runs longitudinally through the thorax and abdomen, along the inside of the dorsal body wall and that forms the major structural component of the open circulatory system of arthropods." [UBERON:cjm] synonym: "dorsal vessel" RELATED SENSU [FBbt:00058291, NCBITaxon:50557] -xref: FBbt:00058291 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00058291 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0000926 ! mesoderm @@ -335432,7 +339407,7 @@ synonym: "short saphenal nerve" RELATED [] xref: EMAPA:37757 {source="MA:th"} xref: FMA:44688 xref: MA:0003111 -xref: MESH:D013497 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013497 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C77675 xref: SCTID:181073006 xref: Wikipedia:Sural_nerve @@ -336989,6 +340964,7 @@ relationship: part_of UBERON:0003625 ! manual digit 5 id: UBERON:0016430 name: palmar branch of median nerve def: "The palmar branch of the median nerve is a branch of the median nerve which arises at the lower part of the forearm and innervates skin of proximal central palm and thenar eminence." [http://medical-dictionary.thefreedictionary.com/palmar+branch+of+median+nerve, Wikipedia:Palmar_branch_of_the_median_nerve] +subset: human_reference_atlas subset: pheno_slim synonym: "median nerve palmar branch" EXACT [FMA:44836] synonym: "palmar branch of anterior interosseous nerve" EXACT [FMA:44836] @@ -337003,6 +340979,7 @@ relationship: innervates UBERON:0008878 ! palmar part of manus relationship: innervates UBERON:0017716 ! thenar eminence relationship: part_of UBERON:0001148 ! median nerve relationship: part_of UBERON:0002102 ! forelimb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: structure_notes "does not pass through the carpal tunnel" xsd:string [Term] @@ -337012,7 +340989,7 @@ def: "Subdivision of thorax which includes all structures from the skin to the c subset: pheno_slim xref: EMAPA:37233 {source="MA:th"} xref: FMA:50060 -xref: MESH:D035441 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D035441 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NCIT:C62484 xref: SCTID:181608004 is_a: UBERON:0000060 ! anatomical wall @@ -337319,8 +341296,12 @@ intersection_of: bounding_layer_of UBERON:0002107 ! liver relationship: bounding_layer_of UBERON:0002107 ! liver relationship: composed_primarily_of UBERON:0018135 ! fibrocollagenous connective tissue relationship: part_of UBERON:0002107 ! liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI property_value: structure_notes "It consists of type III collagen and extends to the stroma of endothelial sinusoids. It is covered by a single layer of mesothelial cells." xsd:string [Term] @@ -337420,9 +341401,9 @@ synonym: "centrum of vertebra" EXACT [] xref: VSAO:0000183 is_a: UBERON:0004765 {source="VSAO"} ! skeletal element relationship: part_of UBERON:0010913 {source="VSAO"} ! vertebral element +property_value: dc:contributor https://github.com/cmungall property_value: external_definition "Skeletal element that surrounds the notochord.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000183", ontology="VSAO", source="VSAO:curator"} property_value: external_definition "the main cylindrical portion of the vertebra ventral to the vertebral canal" xsd:string {source="MP:0000141,ISBN:0-683-40008-8,PMID:10572046"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall property_value: taxon_notes "The vertebral centrum may be cartilaginous, develop as cartilage but be replaced by bone or mineralized, or form directly through intramembranous ossification." xsd:string [Term] @@ -337591,12 +341572,14 @@ relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0016508 name: pelvic ganglion +subset: human_reference_atlas synonym: "inferior hypogastric ganglion" EXACT [FMA:80131] synonym: "pelvic ganglia" RELATED OMO:0003004 [] xref: EMAPA:31527 xref: FMA:80131 xref: SCTID:324760006 is_a: UBERON:0003964 {source="FMA"} ! prevertebral ganglion +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0016509 @@ -337887,7 +341870,7 @@ xref: DMBA:16016 xref: EMAPA:35667 xref: FMA:242203 xref: MA:0000916 -xref: MESH:D010296 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D010296 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: neuronames:2473 xref: NLX:79282 xref: SCTID:369217001 @@ -337953,7 +341936,7 @@ xref: DHBA:10235 xref: DMBA:16044 xref: FMA:242201 xref: MA:0000941 -xref: MESH:D013702 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D013702 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: NLX:94939 xref: SCTID:362343001 is_a: UBERON:0016529 ! cortex of cerebral lobe @@ -338982,7 +342965,7 @@ id: UBERON:0016884 name: shoulder joint def: "The joint that is formed by the union of the humerus, the scapula (or shoulder blade), and the clavicle (or collarbone). Commonly thought of as a single joint, the shoulder is actually made up of two separate joints - the glenohumeral and acromioclavicular joints." [http://www.innerbody.com/image/skel17.html] synonym: "joint of shoulder region" EXACT [] -xref: MESH:D012785 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D012785 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:361835002 is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint @@ -339960,6 +343943,7 @@ is_a: UBERON:0005486 ! venous dural sinus id: UBERON:0017641 name: meningeal branch of spinal nerve def: "Branch of spinal nerve that innervates the structures of the vertebral column." [http://orcid.org/0000-0002-6601-2165, Wikipedia:Spinal_nerve] +subset: human_reference_atlas synonym: "ramus meningeus nervorum spinales" EXACT [FMA:5988] synonym: "recurrent meningeal branch of spinal nerve" EXACT [FMA:5988] synonym: "sinuvertebral branch of spinal nerve" EXACT [FMA:5988] @@ -339970,11 +343954,13 @@ xref: Wikipedia:Meningeal_branches_of_spinal_nerve is_a: UBERON:0001021 ! nerve relationship: branching_part_of UBERON:0005476 {source="FMA"} ! spinal nerve trunk relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0017642 name: communicating branch of spinal nerve def: "Rami communicans (plural rami communicantes) is the term used for a nerve which connects two other nerves. When used without further definition, it almost always refers to a communicating branch between a spinal nerve and the sympathetic trunk. More specifically, it usually refers to one of the following: Gray ramus communicans White ramus communicans." [Wikipedia:Rami_communicans] +subset: human_reference_atlas synonym: "rami communicantes" BROAD [Wikipedia:Rami_communicans] synonym: "rami communicantes of spinal nerve" RELATED [Wikipedia:Rami_communicans] xref: FMA:5874 @@ -339983,6 +343969,7 @@ xref: Wikipedia:Rami_communicans is_a: UBERON:0001021 ! nerve relationship: branching_part_of UBERON:0005476 ! spinal nerve trunk relationship: part_of UBERON:0005476 ! spinal nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0017643 @@ -340604,8 +344591,10 @@ relationship: has_part UBERON:0001912 ! lobule of mammary gland relationship: part_of UBERON:0000310 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! breast relationship: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0002100 ! trunk -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.0/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-left/v1.1/assets/3d-vh-f-mammary-gland-l.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.0/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/mammary-gland-female-right/v1.1/assets/3d-vh-f-mammary-gland-r.glb" xsd:anyURI property_value: editor_note "The FMA class 'lactiferous gland' may be equivalent to this" xsd:string [Term] @@ -340671,7 +344660,7 @@ id: UBERON:0018144 name: cervical rib def: "A rib that is attached to a cervical vertebra." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37825 {source="MA:th"} -xref: MESH:D057070 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D057070 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002228 ! rib is_a: UBERON:0003458 ! neck bone intersection_of: UBERON:0002228 ! rib @@ -341101,9 +345090,9 @@ def: "A life cycle stage that starts at completion of development and growth of synonym: "adulthood stage" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000113 ! post-juvenile adult stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/fbastian +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/fbastian [Term] id: UBERON:0018242 @@ -341225,8 +345214,13 @@ is_a: UBERON:0009029 ! pudendal vein relationship: connected_to UBERON:0001317 ! internal iliac vein relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI property_value: taxon_notes "In humans, they begin in the deep veins of the penis which issue from the corpus cavernosum penis, accompany the internal pudendal artery, and unite to form a single vessel, which ends in the internal iliac vein. They receive the veins from the urethral bulb, and the perineal and inferior hemorrhoidal veins" xsd:string [Term] @@ -342345,7 +346339,7 @@ id: UBERON:0018382 name: second instar larva def: "Instar: a stage in the life of an arthropod (as an insect) between two successive molts." [BTO:0001224] xref: BTO:0001224 -xref: FBbt:00005338 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005338 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002548 {source="BTO"} ! larva relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -342371,7 +346365,7 @@ id: UBERON:0018388 name: cercaria def: "A usually tadpole-shaped larval trematode worm that develops in a molluscan host from a redia." [BTO:0005513] xref: BTO:0005513 -xref: MESH:D058487 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D058487 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002548 {source="BTO"} ! larva relationship: only_in_taxon NCBITaxon:6178 ! Trematoda @@ -342596,6 +346590,7 @@ relationship: part_of UBERON:0001486 ! hip joint id: UBERON:0018412 name: vidian nerve def: "A nerve that is formed by the junction of the great petrosal nerve and the deep petrosal nerve and continues on to innervate the palate, nose and lacrimal gland." [http://medical-dictionary.thefreedictionary.com/vidian+nerve, Wikipedia:Nerve_of_pterygoid_canal] +subset: human_reference_atlas synonym: "nerve of pterygoid canal" EXACT [FMA:67584] synonym: "nerve of the pterygoid canal" RELATED [Wikipedia:Nerve_of_pterygoid_canal] synonym: "pterygoid canal nerve" EXACT [FMA:67584] @@ -342608,6 +346603,7 @@ is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0001647 ! facial nerve relationship: innervates UBERON:0007375 ! roof of mouth relationship: part_of UBERON:0001647 ! facial nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: external_ontology_notes "FMA classifies as an anatomical junction" xsd:string {external_ontology="FMA"} [Term] @@ -343726,7 +347722,7 @@ id: UBERON:0018656 name: puparium def: "A chitin-based cuticular shell derived from the cuticle of the final larval instar that surrounds the pupal form of the organism." [Wikipedia:Pupa#Puparium] synonym: "puparia" RELATED OMO:0003004 [] -xref: FBbt:00004987 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004987 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001001 {source="FBbt"} ! chitin-based cuticle is_a: UBERON:0018657 ! pupal case relationship: develops_from UBERON:0002548 ! larva @@ -343816,6 +347812,7 @@ relationship: part_of UBERON:0000948 ! heart id: UBERON:0018675 name: pelvic splanchnic nerve def: "A splanchnic nerves that arises from sacral spinal nerves S2, S3, S4 to provide parasympathetic innervation to the hindgut." [Wikipedia:Pelvic_splanchnic_nerves] +subset: human_reference_atlas synonym: "nervi erigentes" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi pelvici splanchnici" RELATED OMO:0003011 [Wikipedia:Pelvic_splanchnic_nerves] synonym: "nervi splanchnici pelvici" RELATED [Wikipedia:Pelvic_splanchnic_nerves] @@ -343830,6 +347827,7 @@ xref: Wikipedia:Pelvic_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve is_a: UBERON:0004293 ! parasympathetic nerve relationship: part_of UBERON:0000011 {source="EHDAA2", source="WP"} ! parasympathetic nervous system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018676 @@ -343846,6 +347844,7 @@ is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus id: UBERON:0018679 name: thoracic splanchnic nerve def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and general visceral afferent fibers." [Wikipedia:Thoracic_splanchnic_nerves] +subset: human_reference_atlas xref: FMA:6280 xref: Wikipedia:Thoracic_splanchnic_nerves is_a: UBERON:0003715 ! splanchnic nerve @@ -343855,34 +347854,41 @@ intersection_of: connects UBERON:0004863 ! thoracic sympathetic nerve trunk relationship: branching_part_of UBERON:0004863 {source="FMA"} ! thoracic sympathetic nerve trunk relationship: connects UBERON:0004863 ! thoracic sympathetic nerve trunk relationship: part_of UBERON:0004863 ! thoracic sympathetic nerve trunk +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018680 name: greater splanchnic nerve comment: The nerve travels through the diaphragm and enters the abdominal cavity, where its fibers synapse at the celiac ganglia. The nerve contributes to the celiac plexus, a network of nerves located in the vicinity of where the celiac trunk branches from the abdominal aorta. The fibers in this nerve modulate the activity of the enteric nervous system of the foregut. They also provide the sympathetic innervation to the adrenal medulla, stimulating catecholamine release. +subset: human_reference_atlas synonym: "greater thoracic splanchnic nerve" EXACT [FMA:6281] xref: FMA:6281 xref: SCTID:280503007 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018681 name: lesser splanchnic nerve comment: The nerve travels inferiorly, lateral to the greater splanchnic nerve. Its fibers synapse with their postganglionic counterparts in the superior mesenteric ganglia, or in the aorticorenal ganglion. The nerve modulates the activity of the enteric nervous system of the midgut. +subset: human_reference_atlas synonym: "lesser thoracic splanchnic nerve" EXACT [FMA:6282] xref: FMA:6282 xref: SCTID:280505000 is_a: UBERON:0018679 {source="FMA"} ! thoracic splanchnic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018683 name: lumbar splanchnic nerve def: "The lumbar splanchnic nerves are splanchnic nerves that arise from the lumbar part of the sympathetic trunk and travel to an adjacent plexus near the aorta. They are originated from L1 and L2. These nerves contain preganglionic sympathetic and visceral afferent fibers. The site of synapse is found in the prevertebral ganglia and innervate the smooth muscle and glands of the pelvic viscera and hindgut." [Wikipedia:Lumbar_splanchnic_nerves] +subset: human_reference_atlas synonym: "lumbar splanchnic nerve" RELATED [Wikipedia:Lumbar_splanchnic_nerves] xref: FMA:6287 xref: SCTID:280507008 xref: Wikipedia:Lumbar_splanchnic_nerves is_a: UBERON:0003715 {source="FMA"} ! splanchnic nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018684 @@ -344789,6 +348795,7 @@ synonym: "glossopharyngeal nerve root" EXACT [BIRNLEX:1533] xref: BIRNLEX:1533 xref: DHBA:12887 xref: DMBA:17747 +xref: HBA:9334 is_a: UBERON:0006843 ! root of cranial nerve intersection_of: UBERON:0002211 ! nerve root intersection_of: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve @@ -345305,8 +349312,14 @@ xref: Wikipedia:Optic_radiation is_a: UBERON:0022260 {source="FMA"} ! radiation of cerebral hemisphere relationship: part_of UBERON:0022247 {source="DHBA"} ! forebrain ipsilateral fiber tracts relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022268 @@ -345323,8 +349336,14 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001871 {source="HBA"} ! temporal lobe relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: source_atlas Harvard-Oxford:Atlas -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022271 @@ -345431,8 +349450,14 @@ relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: overlaps UBERON:0001157 ! transverse colon relationship: overlaps UBERON:0001158 ! descending colon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0022277 @@ -345457,8 +349482,14 @@ relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut relationship: overlaps UBERON:0001156 ! ascending colon relationship: overlaps UBERON:0001157 ! transverse colon relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.0/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.1/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.2/assets/SBU_F_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-female/v1.3/assets/3d-sbu-f-large-intestine.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.0/assets/SBU_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.1/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.2/assets/SBU_M_Intestine_Large.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/large-intestine-male/v1.3/assets/3d-sbu-m-large-intestine.glb" xsd:anyURI [Term] id: UBERON:0022278 @@ -345707,6 +349738,7 @@ relationship: innervates UBERON:0001712 ! upper eyelid id: UBERON:0022300 name: nasociliary nerve def: "A branch of the ophthalmic nerve that serves to supply the mucous membrane of the nose, the tip of the nose, and the conjunctiva." [http://medical-dictionary.thefreedictionary.com/nasociliary+nerve] +subset: human_reference_atlas synonym: "nasal nerve" EXACT [BTO:0001452] synonym: "nasociliary" RELATED [Wikipedia:Nasociliary_nerve] synonym: "nasociliary nerve" RELATED [BTO:0001452] @@ -345721,11 +349753,13 @@ is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0000348 {source="BTO"} ! ophthalmic nerve relationship: branching_part_of UBERON:0000942 {source="FMA"} ! frontal nerve (branch of ophthalmic) relationship: part_of UBERON:0000942 ! frontal nerve (branch of ophthalmic) +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0022301 name: long ciliary nerve def: "A branch of the nasociliary nerve that innervates the ciliary muscles, the iris, and the cornea." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] +subset: human_reference_atlas synonym: "long ciliary nerve" RELATED [Wikipedia:Long_ciliary_nerves] synonym: "nervi ciliares longi" RELATED OMO:0003011 [Wikipedia:Long_ciliary_nerves] xref: FMA:52691 @@ -345744,11 +349778,13 @@ relationship: innervates UBERON:0000964 ! cornea relationship: innervates UBERON:0001605 ! ciliary muscle relationship: innervates UBERON:0001769 ! iris relationship: part_of UBERON:0022300 ! nasociliary nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0022302 name: short ciliary nerve def: "A branch of the ciliary ganglion that innervates the ciliary muscles, the iris, and the tunics of the eyeball." [http://medical-dictionary.thefreedictionary.com/long+ciliary+nerve, UBERON:cjm] +subset: human_reference_atlas synonym: "lower branch of ciliary ganglion" EXACT [FMA:7041] synonym: "nervi ciliares breves" RELATED OMO:0003011 [Wikipedia:Short_ciliary_nerves] synonym: "nervi ciliares brevis" RELATED OMO:0003011 [] @@ -345770,6 +349806,7 @@ relationship: innervates UBERON:0001605 ! ciliary muscle relationship: innervates UBERON:0001769 ! iris relationship: innervates UBERON:0012430 ! tunica fibrosa of eyeball relationship: part_of UBERON:0002058 ! main ciliary ganglion +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: structure_notes "Contains preganglionic parasympathetic axons." xsd:string [Term] @@ -346223,8 +350260,14 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: source_atlas Harvard-Oxford:Atlas -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022367 @@ -346258,8 +350301,14 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002973 ! parahippocampal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: source_atlas Harvard-Oxford:Atlas -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0022394 @@ -347310,8 +351359,14 @@ is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002769 {source="NIFSTD"} ! superior temporal gyrus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0023862 @@ -348252,7 +352307,7 @@ alt_id: UBERON:0025487 synonym: "regional part of gustatory epithelium" EXACT HUMAN_PREFERRED [BIRNLEX:4100] is_obsolete: true consider: BIRNLEX:4100 -consider: http://uri.neuinfo.org/nif/nifstd/nifext_13 +consider: nifext:13 [Term] id: UBERON:0025236 @@ -350956,6 +355011,7 @@ relationship: supplies UBERON:0013129 ! bulb of vestibule id: UBERON:0034728 name: autonomic nerve def: "The autonomic nerve is a small nerve which carries postganglionic sympathetic and parasympathetic neurons from the zygomaticotemporal nerve; a branch of the maxillary nerve, to the lacrimal nerve; a branch of the ophthalmic nerve. These neurons derive from the superior cervical ganglion and the pterygopalatine ganglion respectively. They will travel to the lacrimal gland via the lacrimal nerve. Parasympathetic will induce lacrimation and vice versa." [Wikipedia:Autonomic_nerve] +subset: human_reference_atlas synonym: "nervus visceralis" EXACT [FMA:5866] synonym: "visceral nerve" EXACT [FMA:5866] xref: EMAPA:37957 {source="MA:th"} @@ -350968,6 +355024,7 @@ relationship: branching_part_of UBERON:0036264 ! zygomaticotemporal nerve relationship: extends_fibers_into UBERON:0001805 ! autonomic ganglion relationship: part_of UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0036264 ! zygomaticotemporal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0034729 @@ -352254,8 +356311,8 @@ is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0034920 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! infant stage relationship: part_of UBERON:0000112 ! sexually immature stage relationship: preceded_by UBERON:0007221 {gci_relation="part_of", gci_filler="NCBITaxon:32524"} ! neonate stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034920 @@ -352265,8 +356322,8 @@ is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0007221 ! neonate stage relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0018685 ! nursing stage -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0034921 @@ -352300,7 +356357,7 @@ name: disconnected anatomical group def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [CARO:0020000] subset: common_anatomy xref: CARO:0020000 -xref: FBbt:00007276 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007276 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 {source="CARO"} ! material anatomical entity relationship: composed_primarily_of UBERON:0000061 ! anatomical structure relationship: has_component UBERON:0000061 {minCardinality="2"} ! anatomical structure @@ -352338,7 +356395,7 @@ id: UBERON:0034926 name: anatomical row def: "An anatomical collection that is arranged in a line." [http://orcid.org/0000-0002-6601-2165] subset: common_anatomy -xref: FBbt:00100152 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100152 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034925 ! anatomical collection relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae relationship: present_in_taxon NCBITaxon:33208 ! Metazoa @@ -352567,12 +356624,12 @@ relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0001898 ! hypothalamus relationship: present_in_taxon NCBITaxon:8022 {source="PMID:4115676"} ! Oncorhynchus mykiss +property_value: dc:contributor https://github.com/cerivs +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/michaelerice property_value: function_notes "Although its function remains hypothetical, it may contain sensory receptors for depth chemical detection. Other probable functions are osmoregulation ionic transport skeletal growth and tooth regeneration, although other homeostatic functions are not excluded" xsd:string property_value: function_notes "response to photoperiodic signals[PMID:23820554]" xsd:string property_value: function_notes "seasonal receptor[PMID:23820554]" xsd:string -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cerivs -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/michaelerice [Term] id: UBERON:0034944 @@ -352785,8 +356842,8 @@ def: "One of several small clusters of chemoreceptors, baroreceptors, and suppor synonym: "aortic bodies" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "aortic glands" RELATED OMO:0003004 [Wikipedia:Aortic_body] synonym: "Zuckerkandl's body" RELATED [Wikipedia:Aortic_body] -xref: BTO:0006193 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} -xref: MESH:D001016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006193 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D001016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: NCIT:C97112 xref: SCTID:75061007 xref: Wikipedia:Aortic_body @@ -353289,7 +357346,7 @@ def: "Either the external or internal abdominal oblique muscles." [UBERON:cjm] synonym: "oblique abdominal muscle" EXACT [MA:0003024] xref: EMAPA:35603 xref: MA:0003024 -xref: MESH:D000071596 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000071596 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002461 {is_inferred="true"} ! anterior abdominal wall muscle relationship: part_of UBERON:0006635 ! anterior abdominal wall @@ -353369,8 +357426,13 @@ is_a: UBERON:0035039 ! rectal artery relationship: connecting_branch_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery relationship: part_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035041 @@ -353485,7 +357547,7 @@ relationship: part_of UBERON:0001044 ! saliva-secreting gland [Term] id: UBERON:0035050 name: excretory duct -xref: BTO:0006341 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006341 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000058 ! duct [Term] @@ -354264,8 +358326,8 @@ relationship: intersects_midsagittal_plane_of UBERON:0000922 ! embryo relationship: only_in_taxon NCBITaxon:6340 ! Annelida relationship: part_of UBERON:0000922 ! embryo relationship: transformation_of UBERON:0035148 ! presumptive axochord -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0035148 @@ -354282,8 +358344,8 @@ relationship: has_potential_to_develop_into UBERON:0035147 ! axochord relationship: intersects_midsagittal_plane_of UBERON:0000922 ! embryo relationship: only_in_taxon NCBITaxon:6340 ! Annelida relationship: part_of UBERON:0000922 ! embryo -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/ANiknejad -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/ANiknejad +property_value: dc:contributor https://github.com/cmungall [Term] id: UBERON:0035149 @@ -354529,8 +358591,13 @@ is_a: UBERON:0001637 ! artery relationship: connecting_branch_of UBERON:0001183 {source="FMA"} ! inferior mesenteric artery relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035183 @@ -355174,7 +359241,8 @@ is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:0035338 @@ -355297,8 +359365,14 @@ xref: Wikipedia:Small_cardiac_vein is_a: UBERON:0004148 {source="FMA", source="ncithesaurus"} ! cardiac vein relationship: connected_to UBERON:0005438 ! coronary sinus relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035377 @@ -355376,8 +359450,11 @@ relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0005806 {source="ncithesaurus"} ! portal system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: tributary_of UBERON:0001138 ! superior mesenteric vein -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035395 @@ -355508,7 +359585,10 @@ is_a: UBERON:0035395 ! branch of left coronary artery relationship: connecting_branch_of UBERON:0001626 {source="FMA"} ! left coronary artery relationship: part_of UBERON:0001626 {source="FMA"} ! left coronary artery relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035425 @@ -355565,7 +359645,7 @@ is_a: UBERON:0001146 ! suprarenal vein is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0001146 ! suprarenal vein intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism -relationship: connected_to UBERON:0001072 ! posterior vena cava +relationship: connected_to UBERON:0001072 ! inferior vena cava relationship: in_right_side_of UBERON:0000468 ! multicellular organism relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -355594,7 +359674,8 @@ xref: SCTID:279703006 xref: UMLS:C0227959 is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0002367 {source="ncithesaurus"} ! prostate gland -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:0035444 @@ -355607,8 +359688,12 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0002107 ! liver -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.0/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.1/assets/VH_F_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-female/v1.2/assets/3d-vh-f-liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.0/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.1/assets/VH_M_Liver.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/liver-male/v1.2/assets/3d-vh-m-liver.glb" xsd:anyURI [Term] id: UBERON:0035445 @@ -356117,7 +360202,13 @@ intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001155 ! colon relationship: part_of RO:0002577 ! system relationship: supplies UBERON:0001155 ! colon -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.0/assets/VH_F_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.0/assets/VH_M_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0035549 @@ -356243,10 +360334,10 @@ relationship: capable_of_part_of GO:0060361 {source="DOI:10.1038/nature14423"} ! relationship: connected_to UBERON:0009880 ! carpal skeleton relationship: only_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of UBERON:0001440 ! forelimb skeleton -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/alex-dececchi -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/balhoff -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/RDruzinsky +property_value: dc:contributor https://github.com/alex-dececchi +property_value: dc:contributor https://github.com/balhoff +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/RDruzinsky property_value: taxon_notes "in some mammals this is found in a cartilaginous state, and articulates with the lateral border of the carpus." xsd:string [Term] @@ -356748,7 +360839,7 @@ synonym: "parapharyngeal space" EXACT [FMA:55081] synonym: "spatium parapharyngeum" EXACT [FMA:TA] xref: CALOHA:TS-2357 xref: FMA:55081 -xref: MESH:D000080886 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000080886 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: SCTID:180439004 xref: SCTID:280190005 xref: Wikipedia:Parapharyngeal_space @@ -357212,6 +361303,7 @@ relationship: part_of UBERON:0035771 ! mesenteric plexus id: UBERON:0035770 name: inferior mesenteric nerve plexus def: "The inferior mesenteric plexus is derived chiefly from the aortic plexus. It surrounds the inferior mesenteric artery, and divides into a number of secondary plexuses, which are distributed to all the parts supplied by the artery, viz. , the left colic and sigmoid plexuses, which supply the descending and sigmoid parts of the colon; and the superior hemorrhoidal plexus, which supplies the rectum and joins in the pelvis with branches from the pelvic plexuses." [Wikipedia:Inferior_mesenteric_plexus] +subset: human_reference_atlas synonym: "inferior mesenteric plexus" EXACT [FMA:6641] synonym: "plexus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] synonym: "plexus nervosus mesentericus inferior" EXACT OMO:0003011 [FMA:TA] @@ -357230,18 +361322,23 @@ relationship: innervates UBERON:0001052 ! rectum relationship: innervates UBERON:0001158 ! descending colon relationship: innervates UBERON:0001159 ! sigmoid colon relationship: part_of RO:0002577 ! system +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035771 name: mesenteric plexus +subset: human_reference_atlas xref: SCTID:314752009 is_a: UBERON:0001816 ! autonomic nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035772 name: aortic plexus +subset: human_reference_atlas xref: FMA:80133 is_a: UBERON:0001816 {source="FMA"} ! autonomic nerve plexus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0035773 @@ -358346,8 +362443,14 @@ is_a: UBERON:0002616 {source="HBA"} ! regional part of brain relationship: part_of UBERON:0016525 {source="HBA"} ! frontal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.1/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.2/assets/Allen_F_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.3/assets/3d-vh-f-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-female/v1.4/assets/3d-allen-f-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.1/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.2/assets/Allen_M_Brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.3/assets/3d-vh-m-allen-brain.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/brain-male/v1.4/assets/3d-allen-m-brain.glb" xsd:anyURI [Term] id: UBERON:0035933 @@ -359029,7 +363132,7 @@ id: UBERON:0036016 name: honey def: "A sweet viscid material elaborated out of the nectar of flowers in the honey sac of various bees." [BTO:0000605, Wikipedia:Honey#Formation] xref: BTO:0000605 -xref: MESH:D006722 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D006722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: Wikipedia:Honey is_a: UBERON:0036017 ! regurgitated substance relationship: only_in_taxon NCBITaxon:7434 ! Aculeata @@ -359243,7 +363346,7 @@ id: UBERON:0036145 name: glymphatic system def: "Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [DOI:10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] xref: EMAPA:37872 {source="MA:th"} -xref: MESH:D000077502 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D000077502 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001016 ! nervous system property_value: function_notes "hypothesized to be have roles such as waste clearance, distribution of compounds" xsd:string @@ -359548,6 +363651,7 @@ relationship: present_in_taxon NCBITaxon:4751 ! Fungi id: UBERON:0036216 name: tympanic nerve def: "The tympanic nerve (nerve of Jacobson) is a branch of the glossopharyngeal nerve found near the ear." [Wikipedia:Tympanic_nerve] +subset: human_reference_atlas synonym: "jacobson%27s nerve" RELATED [Wikipedia:Tympanic_nerve] synonym: "nerve of jacobson" RELATED [Wikipedia:Tympanic_nerve] synonym: "tympanic" RELATED [Wikipedia:Tympanic_nerve] @@ -359559,6 +363663,7 @@ xref: Wikipedia:Tympanic_nerve is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0001649 {source="FMA"} ! glossopharyngeal nerve relationship: part_of UBERON:0001649 ! glossopharyngeal nerve +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0036217 @@ -359635,7 +363740,7 @@ name: vaginal fluid def: "Fluid that lines the vaginal walls that consists of multiple secretions that collect in the vagina from different glands." [http://www.bumc.bu.edu/sexualmedicine/physicianinformation/female-genital-anatomy/] synonym: "vaginal discharge" RELATED [] synonym: "vaginal secretion" RELATED [] -xref: BTO:0003084 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0003084 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid intersection_of: located_in UBERON:0000996 ! vagina @@ -361760,8 +365865,12 @@ intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001152 ! cystic duct relationship: part_of UBERON:0015482 {source="FMA", source="Wikipedia"} ! right hepatic artery relationship: supplies UBERON:0001152 ! cystic duct -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.1/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.2/assets/VH_F_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-female/v1.3/assets/3d-vh-f-blood-vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.1/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.2/assets/VH_M_Blood_Vasculature.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/blood-vasculature-male/v1.3/assets/3d-vh-m-blood-vasculature.glb" xsd:anyURI [Term] id: UBERON:0039228 @@ -362084,7 +366193,7 @@ is_a: UBERON:0001145 {source="FMA"} ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein intersection_of: drains UBERON:0002118 ! right ovary relationship: drains UBERON:0002118 ! right ovary -relationship: tributary_of UBERON:0001072 {source="FMA"} ! posterior vena cava +relationship: tributary_of UBERON:0001072 {source="FMA"} ! inferior vena cava [Term] id: UBERON:0039857 @@ -362123,8 +366232,8 @@ def: "Subdivision of the head consisting of the area along the lower edge of the subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0008199 ! chin -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000001 @@ -362136,8 +366245,8 @@ synonym: "cranial hair" RELATED [] synonym: "head hair" RELATED [] is_a: UBERON:0014382 ! collection of hairs on head or neck relationship: part_of UBERON:0000033 ! head -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000002 @@ -362147,8 +366256,8 @@ subset: phenotype_rcn synonym: "cranial midline" RELATED [] is_a: UBERON:0001444 ! subdivision of head relationship: intersects_midsagittal_plane_of UBERON:0000033 ! head -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000003 @@ -362172,8 +366281,8 @@ intersection_of: UBERON:0010164 ! collection of hairs intersection_of: part_of UBERON:0001691 ! external ear relationship: composed_primarily_of UBERON:0022279 ! strand of hair on external ear relationship: part_of UBERON:0001691 ! external ear -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000005 @@ -362182,8 +366291,8 @@ def: "Area along the edge of the external ear." [https://github.com/obophenotype subset: phenotype_rcn is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001691 ! external ear -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger property_value: seeAlso "https://github.com/obophenotype/uberon/issues/1795" xsd:string [Term] @@ -362195,8 +366304,8 @@ is_a: UBERON:0010165 ! collection of hair on face intersection_of: UBERON:0010164 ! collection of hairs intersection_of: part_of UBERON:0008200 ! forehead relationship: part_of UBERON:0008200 ! forehead -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000007 @@ -362205,8 +366314,8 @@ def: "A bulge, knob, or swelling that protrudes from the forehead." [https://git subset: phenotype_rcn is_a: UBERON:0010188 ! protuberance relationship: part_of UBERON:0008200 ! forehead -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000008 @@ -362217,8 +366326,8 @@ is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure relationship: in_left_side_of UBERON:0001456 ! face relationship: part_of UBERON:0001456 ! face -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000009 @@ -362227,8 +366336,8 @@ def: "A ridge or peak located along the middle part of the head, located approxi subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000010 @@ -362240,7 +366349,7 @@ synonym: "melanocytic nevus" RELATED [] synonym: "naevus" EXACT [ZFA:0005043] synonym: "nevus" EXACT [ZFA:0005043] xref: EFO:0000625 -xref: MESH:D009506 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D009506 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: MPATH:361 xref: TAO:0005043 xref: Wikipedia:Melanocytic_nevus @@ -362274,8 +366383,8 @@ subset: phenotype_rcn is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0007827 ! external nose -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000013 @@ -362285,8 +366394,8 @@ subset: phenotype_rcn is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0007827 ! external nose -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000014 @@ -362297,8 +366406,8 @@ is_a: UBERON:0001444 ! subdivision of head is_a: UBERON:0015212 ! lateral structure relationship: in_right_side_of UBERON:0001456 ! face relationship: part_of UBERON:0001456 ! face -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000015 @@ -362312,8 +366421,8 @@ is_a: UBERON:1000021 ! skin of face intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0006333 ! snout relationship: part_of UBERON:0006333 ! snout -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000016 @@ -362322,8 +366431,8 @@ def: "Subdivision of the head consisting of the pointed or rounded end or extrem subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0006333 ! snout -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000017 @@ -362332,8 +366441,8 @@ def: "Subdivision of the head consisting of the pointed or rounded end or extrem subset: phenotype_rcn is_a: UBERON:0034929 ! external soft tissue zone relationship: part_of UBERON:0001691 ! external ear -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000018 @@ -362342,8 +366451,8 @@ def: "A small collection or tuft of hairs." [https://github.com/obophenotype/ube subset: phenotype_rcn synonym: "tuft of hair" RELATED [] is_a: UBERON:0010164 ! collection of hairs -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger [Term] id: UBERON:1000019 @@ -362355,9 +366464,9 @@ synonym: "vertex of head" EXACT [FMA:46484] xref: FMA:46484 xref: SCTID:362616002 is_a: UBERON:0001444 ! subdivision of head +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger property_value: external_ontology_notes "in the FMA, vertex is a point and not a subdivision" xsd:string {external_ontology="FMA"} -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger [Term] id: UBERON:1000020 @@ -362369,8 +366478,8 @@ intersection_of: UBERON:0010165 ! collection of hair on face intersection_of: part_of UBERON:0006333 ! snout relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 relationship: part_of UBERON:0006333 ! snout -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger creation_date: 2012-02-05T05:21:29Z [Term] @@ -362391,8 +366500,8 @@ intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001456 ! face relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 relationship: part_of UBERON:0001456 ! face -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/cmungall -property_value: http://purl.org/dc/elements/1.1/contributor https://github.com/seger +property_value: dc:contributor https://github.com/cmungall +property_value: dc:contributor https://github.com/seger creation_date: 2012-02-05T05:23:01Z [Term] @@ -362613,7 +366722,7 @@ id: UBERON:2000006 name: ball def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] -xref: MESH:D015452 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D015452 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ZFA:0000006 is_a: UBERON:0000475 ! organism subdivision relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia @@ -363121,7 +367230,7 @@ id: UBERON:2000188 name: corpus cerebelli synonym: "cerebellar corpus" EXACT [TAO:0000188] synonym: "corpus cerebellum" EXACT [TAO:0000188] -xref: MESH:D002531 {mapping:provider="https://github.com/biopragmatics/biomappings", mapping:justification="https://w3id.org/semapv/vocab/LexicalMatching"} +xref: MESH:D002531 {sssom:mapping_provider="https://github.com/biopragmatics/biomappings", sssom:mapping_justification="https://w3id.org/semapv/vocab/LexicalMatching"} xref: ZFA:0000188 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0002037 ! cerebellum @@ -363731,7 +367840,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo [Term] id: UBERON:2000293 name: synencephalon -xref: BTO:0006476 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006476 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000293 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0001894 ! diencephalon @@ -363757,7 +367866,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:2000297 name: vagal lobe synonym: "nX" RELATED [TAO:0000297] -xref: BTO:0006431 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006431 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0007635 ! nucleus of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -364022,7 +368131,7 @@ synonym: "branchiospine" EXACT [PSPUB:0000164] synonym: "gill rakers" EXACT OMO:0003004 [TAO:0000356] synonym: "gill-raker" EXACT [TAO:0000356] synonym: "gillraker" EXACT [TAO:0000356] -xref: BTO:0002149 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0002149 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0000356 is_a: UBERON:0008907 ! dermal bone relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia @@ -370877,7 +374986,7 @@ name: manubrium synonym: "intercalarium anterior process" EXACT [DOI:10.1002/dvdy.10387] synonym: "intercalarium horizontal process" EXACT [DOI:10.1111/j.1096-3642.1981.tb01575.x] synonym: "manubrium incudus" EXACT [TAO:Bird_2003] -xref: MESH:D008371 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D008371 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001601 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:2000461 ! Weberian ossicle @@ -374317,7 +378426,7 @@ id: UBERON:2001977 name: pad def: "Surface structure that is a portion of the integument thickened relative to surrounding area." [TAO:wd] synonym: "pads" EXACT OMO:0003004 [TAO:0001977] -xref: MESH:D058729 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D058729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0002199 ! integument property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} @@ -384147,11 +388256,14 @@ replaced_by: UBERON:3010728 [Term] id: UBERON:3010146 -name: lacrimal -def: "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS] +name: obsolete lacrimal +def: "OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS] +comment: The synonym of this term has been merged into 'lacrimal bone'. synonym: "ectethmoid" RELATED [UBERON:3010146] -is_a: UBERON:0006813 ! nasal skeleton property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2804" xsd:string +is_obsolete: true +replaced_by: UBERON:0001680 [Term] id: UBERON:3010156 @@ -385171,7 +389283,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010463 name: animal cap synonym: "animal ectoderm" RELATED [UBERON:3010463] -xref: BTO:0004724 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0004724 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -385527,7 +389639,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:3010586 name: vasa efferentia def: "Sperm travel through these 4 or 5 fine ducts which pass through the mesorchium from the testis to the sexual kidney." [AAO:BMZ] -xref: BTO:0002254 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0002254 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006946 ! efferent duct property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"} @@ -387066,7 +391178,7 @@ property_value: provenance_notes "This class was sourced from an external ontolo id: UBERON:4000104 name: ganoine def: "Odontogenic tissue that is hypermineralized acellular, noncollagenous, covered by an epidermis and often deposited in multiple layers." [PSPUB:0000170] -xref: MESH:C067951 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:C067951 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0003585 ! dermis connective tissue is_a: UBERON:0010365 ! odontoid tissue relationship: part_of UBERON:4000052 ! ganoid scale @@ -387311,7 +391423,7 @@ def: "Median fin that is located posterior to the anus." [TAO:curator] synonym: "nageoire anale" EXACT [PSPUB:0000164] synonym: "proctoptère" EXACT [PSPUB:0000136] synonym: "proctoptérygie" EXACT [PAPUB:0000142, PSPUB:0000140] -xref: BTO:0004652 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0004652 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001162 is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin @@ -387329,7 +391441,7 @@ synonym: "tail" RELATED [VSAO:0000164] synonym: "tail fin" RELATED [VSAO:0000164] synonym: "uroptère" EXACT [PSPUB:0000135] synonym: "uroptérygie" EXACT [PSPUB:0000140] -xref: BTO:0001827 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001827 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: ZFA:0001058 is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin @@ -389335,7 +393447,7 @@ relationship: part_of UBERON:0011583 ! stylopodial skeleton id: UBERON:4200215 name: suture def: "Line of junction between two parts immovably connected. Modified from Henderson's Dictionary of Biological Terms." [PHENOSCAPE] -xref: MESH:D013537 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0001-9439-5346", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: MESH:D013537 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0001-9439-5346", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0002209 ! fibrous joint [Term] @@ -390535,7 +394647,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300194 name: photophore def: "A light-emitting organ which appears as luminous spots on various marine animals, including fish and cephalopods." [PHENOSCAPE] {comment="https://en.wikipedia.org/wiki/Photophore"} -xref: BTO:0001477 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0001477 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000062 ! organ relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires @@ -392301,7 +396413,7 @@ id: UBERON:6000002 name: arthropod tagma def: "One of the main divisions of the whole organism of arthropods formed from groups of segments." [doi:10.1016/B978-0-12-385026-3.00024-3] comment: Strictly speaking the term "tagma" cam be used for any metameric organism, however we follow the common usage which is to restrict the term to arthropods. -xref: FBbt:00000002 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000002 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011676 ! subdivision of organism along main body axis relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -392310,7 +396422,7 @@ relationship: part_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:6000004 name: panarthropod head -xref: FBbt:00000004 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000004 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: part_of NCBITaxon:88770 ! Panarthropoda @@ -392321,7 +396433,7 @@ id: UBERON:6000005 name: insect ocular segment def: "Head segment derived from the second embryonic segment (between the labral and antennal segments). In the larva, this segment includes Bolwig's organ." [FlyBase:FBrf0055841, FlyBase:FBrf0075072] synonym: "acron" RELATED [] -xref: FBbt:00000005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:50557 {source="cjm"} ! Insecta @@ -392330,7 +396442,7 @@ relationship: only_in_taxon NCBITaxon:50557 {source="cjm"} ! Insecta id: UBERON:6000006 name: insect head segment def: "Any segment that is part of some insect head." [UBERON:cjm] -xref: FBbt:00000006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:0000033 ! head @@ -392345,7 +396457,7 @@ synonym: "cephalic segment" RELATED [] synonym: "pregnathal segment" EXACT [] synonym: "preoral segment" EXACT [] synonym: "procephalon" RELATED [] -xref: FBbt:00000007 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000033 ! head @@ -392355,14 +396467,14 @@ id: UBERON:6000008 name: labral segment def: "Procephalic segment anterior to the antennal segment. In the adult it bears the clypeo-labrum." [FlyBase:FBrf0075072, FlyBase:FBrf0089570] synonym: "clypeo-labrum" RELATED [] -xref: FBbt:00000008 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000008 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment [Term] id: UBERON:6000009 name: antennal segment def: "Segment anterior to the intercalary segment. In the adult it bears the antennae." [FBC:DOS] -xref: FBbt:00000009 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment [Term] @@ -392370,7 +396482,7 @@ id: UBERON:6000011 name: insect gnathal segment def: "The head segments that develop posterior to the embryonic/larval mouth." [FBC:gg] synonym: "postoral segment" RELATED [] -xref: FBbt:00000011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment relationship: part_of UBERON:0000033 ! head @@ -392378,14 +396490,14 @@ relationship: part_of UBERON:0000033 ! head id: UBERON:6000014 name: insect labial segment def: "Most posterior of the gnathal segments. In the adult it bears a pair of fused appendages, the labia, and its ectodermal invaginations give rise to the salivary glands." [FlyBase:FBrf0007734] -xref: FBbt:00000014 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000014 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment [Term] id: UBERON:6000015 name: insect thorax def: "The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs." [FlyBase:FBrf0166419] -xref: FBbt:00000015 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000015 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392393,7 +396505,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6000016 name: insect thoracic segment def: "Any segment (UBERON:6000003) that is part of some thorax (UBERON:6000015)." [FBC:auto_generated_definition] -xref: FBbt:00000016 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000016 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:6000015 ! insect thorax @@ -392406,7 +396518,7 @@ def: "The first (most anterior) segment of the thorax." [FBC:DOS] synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] -xref: FBbt:00000017 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000017 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment relationship: part_of UBERON:6000015 ! insect thorax @@ -392417,7 +396529,7 @@ def: "The second (middle) segment of the thorax." [FBC:DOS] synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] -xref: FBbt:00000018 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment relationship: part_of UBERON:6000015 ! insect thorax @@ -392428,7 +396540,7 @@ def: "The third (most posterior) segment of the thorax." [FBC:DOS] synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] -xref: FBbt:00000019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment relationship: part_of UBERON:6000015 ! insect thorax @@ -392436,7 +396548,7 @@ relationship: part_of UBERON:6000015 ! insect thorax id: UBERON:6000020 name: insect abdomen def: "The most posterior of the three tagma (UBERON:6000002)." [FlyBase:FBrf0166419] -xref: FBbt:00000020 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392444,7 +396556,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6000021 name: insect abdominal segment def: "Metameric subdivision of the abdomen." [FBC:SPR] -xref: FBbt:00000021 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000021 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:6000020 ! insect abdomen @@ -392454,7 +396566,7 @@ relationship: part_of UBERON:6000020 ! insect abdomen id: UBERON:6000029 name: insect abdominal segment 8 synonym: "a8" RELATED [] -xref: FBbt:00000029 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000029 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment relationship: part_of UBERON:6000020 ! insect abdomen @@ -392462,7 +396574,7 @@ relationship: part_of UBERON:6000020 ! insect abdomen id: UBERON:6000030 name: insect abdominal segment 9 synonym: "a9" RELATED [] -xref: FBbt:00000030 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000030 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment relationship: part_of UBERON:6000020 ! insect abdomen @@ -392471,7 +396583,7 @@ id: UBERON:6000046 name: insect dorsal appendage def: "Paired appendage of the eggshell, located on the anterior-dorsal side of the egg, just posterior to the operculum. Functions as a respiratory structures." [FBC:DOS] synonym: "chorionic appendage" EXACT [FlyBase:FBrf0047871] -xref: FBbt:00000046 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000046 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007248 ! insect chorionic specialization [Term] @@ -392483,7 +396595,7 @@ is_obsolete: true [Term] id: UBERON:6000096 name: insect ventral furrow -xref: FBbt:00000096 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000096 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow relationship: part_of UBERON:0000922 ! embryo @@ -392491,7 +396603,7 @@ relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:6000097 name: insect cephalic furrow -xref: FBbt:00000097 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000097 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow relationship: part_of UBERON:0004734 ! gastrula @@ -392500,7 +396612,7 @@ relationship: part_of UBERON:0004734 ! gastrula id: UBERON:6000104 name: insect mesoderm anlage synonym: "ventral plate" RELATED [] -xref: FBbt:00000104 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000104 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage @@ -392513,7 +396625,7 @@ id: UBERON:6000112 name: insect dorsal ectoderm synonym: "AdorEc" RELATED [] synonym: "dorEc" RELATED [] -xref: FBbt:00000112 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000112 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: develops_from UBERON:6005427 ! insect ectoderm anlage relationship: part_of UBERON:6007045 ! insect trunk ectoderm @@ -392522,7 +396634,7 @@ relationship: part_of UBERON:6007045 ! insect trunk ectoderm id: UBERON:6000119 name: insect anterior ectoderm def: "The region of the ectoderm anterior to the cephalic furrow." [FBC:DOS] -xref: FBbt:00000119 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000119 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -392534,7 +396646,7 @@ def: "The mesoderm of segments T1-A9. It first becomes morphologically distinct synonym: "AtrunkMes" RELATED [] synonym: "P2 TrMes" RELATED [FBC:DOS] synonym: "TrMes" RELATED [] -xref: FBbt:00000128 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000128 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000926 ! mesoderm relationship: develops_from UBERON:6000104 ! insect mesoderm anlage relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda @@ -392542,7 +396654,7 @@ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/u [Term] id: UBERON:6000130 name: insect visceral mesoderm -xref: FBbt:00000130 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000130 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda relationship: part_of UBERON:6000128 ! insect trunk mesoderm @@ -392565,7 +396677,7 @@ relationship: part_of UBERON:6000131 ! insect mesodermal crest id: UBERON:6000137 name: embryonic tagma def: "Any tagma (UBERON:6000002) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] -xref: FBbt:00000137 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000137 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0000922 ! embryo @@ -392575,7 +396687,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000154 name: insect embryonic segment def: "Any insect segment that is part of some embryo." [UBERON:cjm] -xref: FBbt:00000154 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000154 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392588,7 +396700,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000157 name: insect embryonic head segment def: "Any segment that is part of some insect embryonic head." [UBERON:cjm] -xref: FBbt:00000157 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000157 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment is_a: UBERON:6000154 ! insect embryonic segment intersection_of: UBERON:0000914 ! organismal segment @@ -392601,7 +396713,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000158 name: insect embryonic procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some embryonic head (UBERON:6000155) in an insect." [FBC:auto_generated_definition] -xref: FBbt:00000158 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000158 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6000157 ! insect embryonic head segment intersection_of: UBERON:6000007 ! procephalic segment @@ -392614,7 +396726,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000160 name: insect embryonic antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] -xref: FBbt:00000160 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000160 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6000158 ! insect embryonic procephalic segment intersection_of: UBERON:6000009 ! antennal segment @@ -392627,7 +396739,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000162 name: insect embryonic gnathal segment def: "Any gnathal segment (UBERON:6000011) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] -xref: FBbt:00000162 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000162 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment is_a: UBERON:6000157 ! insect embryonic head segment intersection_of: UBERON:6000011 ! insect gnathal segment @@ -392638,7 +396750,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000165 name: insect embryonic labial segment def: "Any labial segment (UBERON:6000014) that is part of some embryonic head (UBERON:6000155)." [FBC:auto_generated_definition] -xref: FBbt:00000165 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000165 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000014 ! insect labial segment is_a: UBERON:6000162 ! insect embryonic gnathal segment intersection_of: UBERON:6000014 ! insect labial segment @@ -392649,7 +396761,7 @@ relationship: part_of UBERON:0008816 ! embryonic head id: UBERON:6000166 name: insect embryonic thorax def: "Any thorax (UBERON:6000015) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] -xref: FBbt:00000166 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000166 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6000137 ! embryonic tagma intersection_of: UBERON:6000015 ! insect thorax @@ -392660,7 +396772,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000167 name: insect embryonic thoracic segment def: "Any segment (UBERON:6000003) that is part of some embryonic thorax (UBERON:6000166)." [FBC:auto_generated_definition] -xref: FBbt:00000167 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000167 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6000154 ! insect embryonic segment intersection_of: UBERON:0000914 ! organismal segment @@ -392674,7 +396786,7 @@ def: "Prothoracic segment of the embryo." [FBC:DOS] synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] -xref: FBbt:00000168 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment intersection_of: UBERON:6000017 ! insect prothoracic segment @@ -392688,7 +396800,7 @@ def: "Mesothoracic segment of the embryo." [FBC:DOS] synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] -xref: FBbt:00000169 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000169 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment intersection_of: UBERON:6000018 ! insect mesothoracic segment @@ -392702,7 +396814,7 @@ def: "Metathoracic segment of the embryo." [FBC:DOS] synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] -xref: FBbt:00000170 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000170 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000019 ! insect metathoracic segment is_a: UBERON:6000167 ! insect embryonic thoracic segment intersection_of: UBERON:6000019 ! insect metathoracic segment @@ -392713,7 +396825,7 @@ relationship: part_of UBERON:6000166 ! insect embryonic thorax id: UBERON:6000171 name: insect embryonic abdomen def: "Abdomen of the embryo." [FBC:DOS] -xref: FBbt:00000171 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000171 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6000137 ! embryonic tagma intersection_of: UBERON:6000020 ! insect abdomen @@ -392724,7 +396836,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000172 name: insect embryonic abdominal segment def: "Metameric subdivision of the embryonic abdomen." [FBC:SPR] -xref: FBbt:00000172 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000172 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6000154 ! insect embryonic segment intersection_of: UBERON:0000914 ! organismal segment @@ -392736,7 +396848,7 @@ id: UBERON:6000180 name: insect embryonic abdominal segment 8 def: "Any abdominal segment 8 (UBERON:6000029) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] synonym: "a8" RELATED [] -xref: FBbt:00000180 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000180 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000029 ! insect abdominal segment 8 is_a: UBERON:6000172 ! insect embryonic abdominal segment intersection_of: UBERON:6000029 ! insect abdominal segment 8 @@ -392748,7 +396860,7 @@ id: UBERON:6000181 name: insect embryonic abdominal segment 9 def: "Any abdominal segment 9 (UBERON:6000030) that is part of some embryonic abdomen (UBERON:6000171)." [FBC:auto_generated_definition] synonym: "a9" RELATED [] -xref: FBbt:00000181 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000181 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000030 ! insect abdominal segment 9 is_a: UBERON:6000172 ! insect embryonic abdominal segment intersection_of: UBERON:6000030 ! insect abdominal segment 9 @@ -392761,7 +396873,7 @@ name: insect embryonic optic lobe primordium def: "Primordium of the insect embryo that gives rises to the embryonic/larval optic anlage." [ISBN:9783540570790] synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] -xref: FBbt:00000186 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00000186 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 relationship: dc-contributor https://orcid.org/0000-0002-7073-9172 @@ -392780,7 +396892,7 @@ id: UBERON:6001055 name: insect presumptive embryonic/larval nervous system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval nervous system." [FlyBase:FBrf0031012] synonym: "embryonic nervous system" RELATED [FBC:DOS] -xref: FBbt:00001055 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001055 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system [Term] @@ -392788,7 +396900,7 @@ id: UBERON:6001056 name: insect presumptive embryonic/larval central nervous system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval central nervous system." [FlyBase:FBrf0031012] synonym: "embryonic central nervous system" RELATED [FBC:DOS] -xref: FBbt:00001056 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001056 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system relationship: part_of UBERON:6001055 ! insect presumptive embryonic/larval nervous system @@ -392805,7 +396917,7 @@ name: insect visual primordium synonym: "optic lobe placode" RELATED [] synonym: "optic lobe primordium" RELATED [] synonym: "P2 VisSys" RELATED [FBC:DOS] -xref: FBbt:00001059 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001059 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative @@ -392815,7 +396927,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6001060 name: insect embryonic brain def: "Brain of the embryo." [FBC:SPR] -xref: FBbt:00001060 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001060 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain relationship: part_of UBERON:6001056 ! insect presumptive embryonic/larval central nervous system @@ -392823,7 +396935,7 @@ relationship: part_of UBERON:6001056 ! insect presumptive embryonic/larval centr id: UBERON:6001135 name: insect proneural cluster def: "An equivalence group of the neurectoderm where all cells can, although only one will, become a neural progenitor cell." [FlyBase:FBrf0074477, FlyBase:FBrf0089570] -xref: FBbt:00001135 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001135 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -392831,7 +396943,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6001648 name: insect embryonic imaginal precursor def: "Embryonic structure that will proliferate during larval development into a larval imaginal disc. During early embryogenesis the precursor is part of the epithelial sheet before segregating from the epithelial sheet by late embryogenesis (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] -xref: FBbt:00001648 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6005023 ! insect imaginal precursor @@ -392840,7 +396952,7 @@ id: UBERON:6001649 name: insect imaginal disc primordium def: "Population of contiguous, morphologically distinct cells that will form an imaginal disc." [FBC:SPR] synonym: "imaginal disc specific anlage" RELATED [] -xref: FBbt:00001649 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001649 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:6001648 ! insect embryonic imaginal precursor relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium @@ -392851,7 +396963,7 @@ id: UBERON:6001650 name: insect labial disc primordium def: "Primordium that will form the labial disc." [FBC:SPR] synonym: "labial disc specific anlage" RELATED [] -xref: FBbt:00001650 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001650 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:6000165 ! insect embryonic labial segment @@ -392861,7 +396973,7 @@ id: UBERON:6001652 name: insect eye-antennal disc primordium def: "Primordium from which the eye-antennal disc develops." [FBC:SPR] synonym: "eye-antennal disc specific anlage" RELATED [] -xref: FBbt:00001652 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001652 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392871,7 +396983,7 @@ relationship: part_of UBERON:6000160 ! insect embryonic antennal segment id: UBERON:6001653 name: insect dorsal thoracic disc primordium synonym: "dorsal thoracic disc specific anlage" RELATED [] -xref: FBbt:00001653 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001653 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392881,7 +396993,7 @@ relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment id: UBERON:6001655 name: insect dorsal mesothoracic disc primordium synonym: "dorsal mesothoracic disc specific anlage" RELATED [] -xref: FBbt:00001655 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001655 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000169 ! insect embryonic mesothoracic segment @@ -392890,7 +397002,7 @@ relationship: part_of UBERON:6000169 ! insect embryonic mesothoracic segment id: UBERON:6001656 name: insect dorsal metathoracic disc primordium synonym: "dorsal metathoracic disc specific anlage" RELATED [] -xref: FBbt:00001656 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001656 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001653 ! insect dorsal thoracic disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000170 ! insect embryonic metathoracic segment @@ -392899,7 +397011,7 @@ relationship: part_of UBERON:6000170 ! insect embryonic metathoracic segment id: UBERON:6001657 name: insect ventral thoracic disc primordium synonym: "ventral thoracic disc specific anlage" RELATED [] -xref: FBbt:00001657 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001657 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392909,7 +397021,7 @@ relationship: part_of UBERON:6000167 ! insect embryonic thoracic segment id: UBERON:6001658 name: insect ventral prothoracic disc primordium synonym: "ventral prothoracic disc specific anlage" RELATED [] -xref: FBbt:00001658 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001658 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001657 ! insect ventral thoracic disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000168 ! insect embryonic prothoracic segment @@ -392919,7 +397031,7 @@ id: UBERON:6001661 name: insect genital disc primordium def: "Primordium from which the genital disc develops." [FBC:SPR] synonym: "genital disc specific anlage" RELATED [] -xref: FBbt:00001661 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001661 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001649 ! insect imaginal disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:0000922 ! embryo @@ -392929,7 +397041,7 @@ id: UBERON:6001662 name: insect male genital disc primordium def: "Primordium from which the male genital disc derives." [FBC:SPR] synonym: "male genital disc specific anlage" RELATED [] -xref: FBbt:00001662 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001662 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001661 ! insect genital disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000181 ! insect embryonic abdominal segment 9 @@ -392939,7 +397051,7 @@ id: UBERON:6001663 name: insect female genital disc primordium def: "Primordium from which the female genital disc derives." [FBC:SPR] synonym: "female genital disc specific anlage" RELATED [] -xref: FBbt:00001663 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001661 ! insect genital disc primordium relationship: develops_from UBERON:6005533 ! insect ventral epidermis primordium relationship: part_of UBERON:6000180 ! insect embryonic abdominal segment 8 @@ -392949,7 +397061,7 @@ id: UBERON:6001664 name: insect embryonic/larval circulatory system def: "Tubular system of the embryo/larva through which hemolymph flows." [FlyBase:FBrf0031012] synonym: "larval circulatory system" EXACT [] -xref: FBbt:00001664 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001664 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001009 ! circulatory system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000323 ! late embryo @@ -392961,7 +397073,7 @@ name: insect embryonic/larval lymph gland def: "Hematopoietic organ of the larva, located along the dorsal vessel, behind the brain. It produces the plasmatocytes, crystal cells and lamellocytes which are released at the end of the larval instar and onset of metamorphosis. It is composed of 3 pairs of bilateral lobes: an anterior primary lobe, a posterior secondary lobe and the most posterior lobe (or multiple lobes), the tertiary lobe. Each lobe is separated by pericardial cells. In the late embryo, the lymph gland consists of a single pair of lobes (primary lobes) containing around 20 cells each that flank the dorsal vessel. By the second larval instar, the lymph gland is composed of two or three new pairs of posterior lobes, and the primary lobes have increased in size to contain around 200 cells. During the first and early second larval instars, the lymph gland comprises only the hematopoietic progenitor population. The lymph gland increases in size ten-fold by the late third instar, and at this stage the progenitor cells (prohemocytes) become restricted to the medial region (medullary zone) of the primary lobe and become quiescent. The differentiated hemocytes are found in the periphery (cortical zone) of the primary lobe and these cells proliferate extensively. The posterior signalling center is a group of about 30 cells at the posterior tip of the primary lobe that secretes several signalling molecules and functions as a stem-cell niche. The secondary and tertiary lobes contain prohemocytes, and rarely a differentiated cell. Lymph glands are eliminated at metamorphosis." [FlyBase:FBrf0031001, FlyBase:FBrf0032406, FlyBase:FBrf0074444, FlyBase:FBrf0155787, FlyBase:FBrf0162082, FlyBase:FBrf0187467] synonym: "embryonic/larval hematopoietic organ" EXACT [FlyBase:FBrf0074444] synonym: "hematopoietic organ" EXACT [] -xref: FBbt:00001668 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001668 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:6000132 ! insect mesodermal crest of segment T3 @@ -392973,7 +397085,7 @@ relationship: part_of UBERON:6001664 ! insect embryonic/larval circulatory syste id: UBERON:6001722 name: insect ring gland def: "A closely associated cluster of three neuroendocrine glands located anterior to the aorta and dorsal to the esophagus. At embryonic stage 17 and in larva it is found anterior to the brain and is formed by the corpus cardiacum ventrally, the prothoracic gland laterally and the corpus allatum dorsally. The adult ring gland is located anterior to the proventriculus and is formed by the corpus cardiacum ventrally, the corpus allatum dorsally and the hypocerebral ganglion posterior to the corpus cardiacum. It is innervated by neurons of the nervus corporis cardiaci (NccI-III)." [FlyBase:FBrf0064803, FlyBase:FBrf0089570, FlyBase:FBrf0179777, PMID:12966498] -xref: FBbt:00001722 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001722 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000477 ! anatomical cluster relationship: capable_of GO:0046879 ! hormone secretion relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda @@ -392983,7 +397095,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6001728 name: insect larval tagma def: "Any tagma (UBERON:6000002) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] -xref: FBbt:00001728 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001728 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0002548 ! larva @@ -392993,7 +397105,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001729 name: insect larval segment def: "Any segment that is part of some larva." [FBC:auto_generated_definition] -xref: FBbt:00001729 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001729 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393006,7 +397118,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001730 name: insect larval head def: "Any head that is part of some larva." [FBC:auto_generated_definition] -xref: FBbt:00001730 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001730 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000033 ! head intersection_of: UBERON:0000033 ! head intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393019,7 +397131,7 @@ id: UBERON:6001731 name: insect larval ocular segment def: "Any ocular segment (UBERON:6000005) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval acron" RELATED [] -xref: FBbt:00001731 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001731 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000005 ! insect ocular segment is_a: UBERON:6001729 ! insect larval segment is_a: UBERON:6001733 ! insect larval procephalic segment @@ -393031,7 +397143,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001732 name: insect larval head segment def: "Any segment that is part of some larval head." [FBC:auto_generated_definition] -xref: FBbt:00001732 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001732 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:6001730 ! insect larval head @@ -393041,7 +397153,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001733 name: insect larval procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001733 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001733 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6001732 ! insect larval head segment intersection_of: UBERON:6000007 ! procephalic segment @@ -393052,7 +397164,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001734 name: insect larval labral segment def: "Any labral segment (UBERON:6000008) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001734 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001734 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000008 ! labral segment is_a: UBERON:6001733 ! insect larval procephalic segment intersection_of: UBERON:6000008 ! labral segment @@ -393063,7 +397175,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001735 name: insect larval antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001735 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001735 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6001733 ! insect larval procephalic segment intersection_of: UBERON:6000009 ! antennal segment @@ -393074,7 +397186,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001737 name: insect larval gnathal segment def: "Any gnathal segment (UBERON:6000011) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001737 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001737 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000011 ! insect gnathal segment is_a: UBERON:6001732 ! insect larval head segment intersection_of: UBERON:6000011 ! insect gnathal segment @@ -393085,7 +397197,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001740 name: insect larval labial segment def: "Any labial segment (UBERON:6000014) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] -xref: FBbt:00001740 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001740 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000014 ! insect labial segment is_a: UBERON:6001737 ! insect larval gnathal segment intersection_of: UBERON:6000014 ! insect labial segment @@ -393096,7 +397208,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6001741 name: insect larval thorax def: "Any thorax (UBERON:6000015) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] -xref: FBbt:00001741 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001741 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6001728 ! insect larval tagma intersection_of: UBERON:6000015 ! insect thorax @@ -393107,7 +397219,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001742 name: insect larval thoracic segment def: "Any segment (UBERON:6000003) that is part of some larval thorax (UBERON:6001741)." [FBC:auto_generated_definition] -xref: FBbt:00001742 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001742 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6001729 ! insect larval segment intersection_of: UBERON:0000914 ! organismal segment @@ -393121,7 +397233,7 @@ def: "Any prothoracic segment (UBERON:6000017) that is part of some larval thora synonym: "prothorax" RELATED [] synonym: "t1" RELATED [] synonym: "thoracic segment 1" RELATED [] -xref: FBbt:00001743 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001743 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment intersection_of: UBERON:6000017 ! insect prothoracic segment @@ -393135,7 +397247,7 @@ def: "Any mesothoracic segment (UBERON:6000018) that is part of some larval thor synonym: "mesothorax" RELATED [] synonym: "t2" RELATED [] synonym: "thoracic segment 2" RELATED [] -xref: FBbt:00001744 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001744 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment intersection_of: UBERON:6000018 ! insect mesothoracic segment @@ -393149,7 +397261,7 @@ def: "Any metathoracic segment (UBERON:6000019) that is part of some larval thor synonym: "metathorax" RELATED [] synonym: "t3" RELATED [] synonym: "thoracic segment 3" RELATED [] -xref: FBbt:00001745 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001745 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000019 ! insect metathoracic segment is_a: UBERON:6001742 ! insect larval thoracic segment intersection_of: UBERON:6000019 ! insect metathoracic segment @@ -393160,7 +397272,7 @@ relationship: part_of UBERON:6001741 ! insect larval thorax id: UBERON:6001746 name: insect larval abdomen def: "Any abdomen (UBERON:6000020) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] -xref: FBbt:00001746 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001746 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6001728 ! insect larval tagma intersection_of: UBERON:6000020 ! insect abdomen @@ -393171,7 +397283,7 @@ relationship: part_of UBERON:0002548 ! larva id: UBERON:6001747 name: insect larval abdominal segment def: "Any segment (UBERON:6000003) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] -xref: FBbt:00001747 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001747 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6001729 ! insect larval segment intersection_of: UBERON:0000914 ! organismal segment @@ -393183,7 +397295,7 @@ id: UBERON:6001755 name: insect larval abdominal segment 8 def: "Any abdominal segment 8 (UBERON:6000029) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] synonym: "a8" RELATED [] -xref: FBbt:00001755 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001755 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000029 ! insect abdominal segment 8 is_a: UBERON:6001747 ! insect larval abdominal segment intersection_of: UBERON:6000029 ! insect abdominal segment 8 @@ -393195,7 +397307,7 @@ id: UBERON:6001756 name: insect larval abdominal segment 9 def: "Any abdominal segment 9 (UBERON:6000030) that is part of some larval abdomen (UBERON:6001746)." [FBC:auto_generated_definition] synonym: "a9" RELATED [] -xref: FBbt:00001756 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001756 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000030 ! insect abdominal segment 9 is_a: UBERON:6001747 ! insect larval abdominal segment intersection_of: UBERON:6000030 ! insect abdominal segment 9 @@ -393207,7 +397319,7 @@ id: UBERON:6001760 name: insect embryonic/larval imaginal precursor def: "Imaginal precursor that is part of the embryo/larva." [FBC:SPR] synonym: "larval imaginal precursor" EXACT [] -xref: FBbt:00001760 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001760 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005023 ! insect imaginal precursor relationship: part_of UBERON:0002548 ! larva relationship: part_of UBERON:0003142 ! prepupa @@ -393217,7 +397329,7 @@ relationship: part_of UBERON:0003143 ! pupa id: UBERON:6001764 name: insect labial disc def: "Imaginal disc that, in the adult, gives rise to the proboscis, including the prementum, prestomal cavity, labellum, labellar cap and pseudotrachea (Cohen, 1993)." [FlyBase:FBrf0033866, FlyBase:FBrf0064789] -xref: FBbt:00001764 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001764 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001650 ! insect labial disc primordium @@ -393228,7 +397340,7 @@ id: UBERON:6001765 name: insect clypeo-labral disc def: "Imaginal disc that in the adults gives rise to the labrum, anterior and posterior cibarial plates, fish trap bristles, epipharyngeal sclerite and clypeus (Cohen, 1993)." [FlyBase:FBrf0064789] synonym: "clypeolabral disc" EXACT [] -xref: FBbt:00001765 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001765 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6005514 ! insect adult clypeo-labral primordium @@ -393238,7 +397350,7 @@ relationship: part_of UBERON:6001734 ! insect larval labral segment id: UBERON:6001766 name: insect eye-antennal disc def: "Imaginal disc that, in the adults, gives rise to the eye, antenna, head capsule (including all bristles and external membranes) and the maxillary palps (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001766 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001766 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001652 ! insect eye-antennal disc primordium @@ -393247,7 +397359,7 @@ relationship: develops_from UBERON:6001652 ! insect eye-antennal disc primordium id: UBERON:6001767 name: insect antennal disc def: "Posterior portion of the eye-antennal disc. It gives rise to the adult antennal segments and the maxillary palp, as well as contributing to the head capsule." [FlyBase:FBrf0064789] -xref: FBbt:00001767 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001767 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:6001735 ! insect larval antennal segment @@ -393258,7 +397370,7 @@ id: UBERON:6001776 name: insect dorsal thoracic disc def: "Imaginal disc that is a precursor of dorsal thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] synonym: "dorsal thoracic disk" EXACT [] -xref: FBbt:00001776 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001776 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001653 ! insect dorsal thoracic disc primordium @@ -393269,7 +397381,7 @@ id: UBERON:6001778 name: insect wing disc def: "Dorsal imaginal disc of the mesothorax. Precursor of dorsal mesothoracic structures of the adult including the postnotum, scutum, scutellum, wing, wing hinge and part of the notal pleura." [FlyBase:FBrf0064789] synonym: "dorsal mesothoracic disc" EXACT [] -xref: FBbt:00001778 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001778 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001776 ! insect dorsal thoracic disc relationship: develops_from UBERON:6001655 ! insect dorsal mesothoracic disc primordium relationship: part_of UBERON:6001744 ! insect larval mesothoracic segment @@ -393279,7 +397391,7 @@ id: UBERON:6001779 name: insect haltere disc def: "Dorsal imaginal disc of the metathorax. Precursor of structure of the adult dorsal metathorax including the haltere." [FlyBase:FBrf0064789] synonym: "dorsal metathoracic disc" EXACT [] -xref: FBbt:00001779 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001779 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001776 ! insect dorsal thoracic disc relationship: develops_from UBERON:6001656 ! insect dorsal metathoracic disc primordium relationship: part_of UBERON:6001745 ! insect larval metathoracic segment @@ -393290,7 +397402,7 @@ name: insect ventral thoracic disc def: "Imaginal disc that is a precursor of ventral thoracic structures of the adult." [FlyBase:FBrf0064789, FlyBase:FBrf0064803] synonym: "leg disc" RELATED [] synonym: "ventral thoracic disk" EXACT [] -xref: FBbt:00001780 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001780 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001657 ! insect ventral thoracic disc primordium @@ -393303,7 +397415,7 @@ def: "Imaginal disc of the ventral prothoracic segment. Precursor of structures synonym: "1st leg disc" EXACT [] synonym: "T1 leg disc" EXACT [] synonym: "ventral prothoracic disc" EXACT [] -xref: FBbt:00001781 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001781 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001780 ! insect ventral thoracic disc relationship: develops_from UBERON:6001658 ! insect ventral prothoracic disc primordium relationship: part_of UBERON:6001743 ! insect larval prothoracic segment @@ -393312,7 +397424,7 @@ relationship: part_of UBERON:6001743 ! insect larval prothoracic segment id: UBERON:6001784 name: insect genital disc def: "Imaginal disc that gives rise to the internal and external genitalia, analia and adult hind gut (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001784 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001784 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000939 ! imaginal disc is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001661 ! insect genital disc primordium @@ -393321,7 +397433,7 @@ relationship: develops_from UBERON:6001661 ! insect genital disc primordium id: UBERON:6001785 name: insect male genital disc def: "Genital disc that gives rise to the penis and external genitalia, sperm pump, ejaculatory duct, paragonia and vas deferens, anal plates and adult hindgut (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001785 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001785 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001784 ! insect genital disc relationship: develops_from UBERON:6001662 ! insect male genital disc primordium relationship: part_of UBERON:6001747 ! insect larval abdominal segment @@ -393330,7 +397442,7 @@ relationship: part_of UBERON:6001747 ! insect larval abdominal segment id: UBERON:6001787 name: insect female genital disc def: "Genital disc that gives rise to the vagina and vaginal plates, uterus, parovaria, spermatheca, seminal recepticle, oviducts, female analia and hindgut. (Cohen, 1993)." [FlyBase:FBrf0064789] -xref: FBbt:00001787 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001787 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001784 ! insect genital disc relationship: develops_from UBERON:6001663 ! insect female genital disc primordium relationship: part_of UBERON:6001747 ! insect larval abdominal segment @@ -393347,7 +397459,7 @@ replaced_by: CL:0000373 id: UBERON:6001790 name: insect histoblast nest def: "One of several groups of cells in the larval abdomen that gives rise to the adult external abdomen." [FBC:gg] -xref: FBbt:00001790 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001790 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6001760 ! insect embryonic/larval imaginal precursor relationship: part_of UBERON:6001747 ! insect larval abdominal segment @@ -393380,7 +397492,7 @@ id: UBERON:6001842 name: insect embryonic/larval digestive system def: "Digestive system of the insect embryo or larva." [ISBN:9780879698287, ISBN:9780879698997] synonym: "larval digestive system" EXACT [] -xref: FBbt:00001842 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001842 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001007 ! digestive system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002548 ! larva @@ -393392,7 +397504,7 @@ def: "A group of connected sclerites of the anterior embryonic/larval digestive synonym: "cephalo-pharyngeal skeleton" EXACT [FlyBase:FBrf0045366] synonym: "larval head skeleton" EXACT [FlyBase:FBrf0205317] synonym: "mouth parts" EXACT [] -xref: FBbt:00001845 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001845 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization relationship: part_of UBERON:0008816 ! embryonic head relationship: part_of UBERON:6001730 ! insect larval head @@ -393403,7 +397515,7 @@ id: UBERON:6001848 name: insect epipharyngeal sclerite def: "Unpaired sclerite to which the median tooth (labrum) posteriorly merges, and bears the cuticular pores of the labral sense organ." [FlyBase:FBrf0045366] synonym: "epistomal sclerite" EXACT [FlyBase:FBrf0045366] -xref: FBbt:00001848 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001848 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization relationship: part_of UBERON:6001845 ! insect cephalopharyngeal skeleton @@ -393412,7 +397524,7 @@ id: UBERON:6001911 name: insect embryonic/larval nervous system def: "Nervous system of the embryo/larva." [FlyBase:FBrf0045359, FlyBase:FBrf0075072, FlyBase:FBrf0105282] synonym: "larval nervous system" EXACT [] -xref: FBbt:00001911 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001911 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000323 ! late embryo @@ -393423,7 +397535,7 @@ id: UBERON:6001919 name: insect embryonic/larval central nervous system def: "Central nervous system of the embryo/larva." [FBC:SPR] synonym: "larval central nervous system" EXACT [] -xref: FBbt:00001919 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001919 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6001911 ! insect embryonic/larval nervous system @@ -393433,7 +397545,7 @@ name: insect embryonic/larval brain def: "Brain of the embryo/larva." [FBC:SPR] synonym: "larval brain" NARROW [] synonym: "larval supraesophageal ganglion" NARROW [] -xref: FBbt:00001920 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001920 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain is_a: UBERON:0003339 ! ganglion of central nervous system relationship: develops_from UBERON:6001060 ! insect embryonic brain @@ -393445,7 +397557,7 @@ id: UBERON:6001925 name: insect embryonic/larval protocerebrum def: "Protocerebrum of the embryo/larva." [FBC:SPR] synonym: "larval protocerebrum" RELATED [] -xref: FBbt:00001925 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00001925 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6001734 ! insect larval labral segment relationship: part_of UBERON:6001920 ! insect embryonic/larval brain @@ -393455,7 +397567,7 @@ id: UBERON:6002639 name: insect larval sense organ def: "Any sense organ that is part of some larva." [FBC:auto_generated_definition] synonym: "larval sense organ" EXACT [] -xref: FBbt:00002639 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002639 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393468,7 +397580,7 @@ id: UBERON:6002642 name: insect embryonic/larval ocular segment sensillum def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition] synonym: "larval ocular segment sensillum" EXACT [] -xref: FBbt:00002642 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00002642 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007280 ! insect embryonic/larval head sense organ intersection_of: UBERON:6002639 ! insect larval sense organ intersection_of: part_of UBERON:6001731 ! insect larval ocular segment @@ -393478,7 +397590,7 @@ relationship: part_of UBERON:6001731 ! insect larval ocular segment id: UBERON:6003005 name: insect adult tagma def: "Any tagma (UBERON:6000002) that is part of some adult (UBERON:6003004)." [FBC:auto_generated_definition] -xref: FBbt:00003005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000002 ! arthropod tagma intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0007023 ! adult organism @@ -393487,7 +397599,7 @@ relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6003006 name: insect adult segment -xref: FBbt:00003006 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003006 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393500,7 +397612,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003007 name: insect adult head def: "Head of the adult organism." [FBC:SPR] -xref: FBbt:00003007 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000004 ! panarthropod head is_a: UBERON:6003005 ! insect adult tagma intersection_of: UBERON:0000033 ! head @@ -393513,7 +397625,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003009 name: insect adult head segment def: "Segment of the adult head." [FlyBase:FBrf0064788] -xref: FBbt:00003009 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003009 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000006 ! insect head segment is_a: UBERON:6003006 ! insect adult segment intersection_of: UBERON:0000914 ! organismal segment @@ -393524,7 +397636,7 @@ relationship: part_of UBERON:6003007 ! insect adult head id: UBERON:6003010 name: insect adult procephalic segment def: "Any procephalic segment (UBERON:6000007) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] -xref: FBbt:00003010 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003010 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000007 ! procephalic segment is_a: UBERON:6003009 ! insect adult head segment intersection_of: UBERON:6000007 ! procephalic segment @@ -393535,7 +397647,7 @@ relationship: part_of UBERON:6003007 ! insect adult head id: UBERON:6003011 name: insect adult labral segment def: "Any labral segment (UBERON:6000008) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] -xref: FBbt:00003011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000008 ! labral segment is_a: UBERON:6003010 ! insect adult procephalic segment intersection_of: UBERON:6000008 ! labral segment @@ -393547,7 +397659,7 @@ id: UBERON:6003012 name: insect adult antennal segment def: "Any antennal segment (UBERON:6000009) that is part of some adult head (UBERON:6003007)." [FBC:auto_generated_definition] synonym: "adult antennal structure" EXACT [] -xref: FBbt:00003012 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003012 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000009 ! antennal segment is_a: UBERON:6003010 ! insect adult procephalic segment intersection_of: UBERON:6000009 ! antennal segment @@ -393558,7 +397670,7 @@ relationship: part_of UBERON:6003007 ! insect adult head id: UBERON:6003018 name: insect adult thorax def: "Thorax of the adult." [FlyBase:FBim0000792] -xref: FBbt:00003018 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003018 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000015 ! insect thorax is_a: UBERON:6003005 ! insect adult tagma intersection_of: UBERON:6000015 ! insect thorax @@ -393569,7 +397681,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003019 name: insect adult thoracic segment def: "Any segment (UBERON:6000003) that is part of some adult thorax (UBERON:6003018)." [FBC:auto_generated_definition] -xref: FBbt:00003019 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003019 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000016 ! insect thoracic segment is_a: UBERON:6003006 ! insect adult segment intersection_of: UBERON:0000914 ! organismal segment @@ -393583,7 +397695,7 @@ def: "Any prothoracic segment (UBERON:6000017) that is part of some adult thorax synonym: "prothorax" EXACT [] synonym: "t1" EXACT [] synonym: "thoracic segment 1" EXACT [] -xref: FBbt:00003020 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000017 ! insect prothoracic segment is_a: UBERON:6003019 ! insect adult thoracic segment intersection_of: UBERON:6000017 ! insect prothoracic segment @@ -393597,7 +397709,7 @@ def: "Any mesothoracic segment (UBERON:6000018) that is part of some adult thora synonym: "mesothorax" EXACT [] synonym: "t2" EXACT [] synonym: "thoracic segment 2" EXACT [] -xref: FBbt:00003021 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003021 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000018 ! insect mesothoracic segment is_a: UBERON:6003019 ! insect adult thoracic segment intersection_of: UBERON:6000018 ! insect mesothoracic segment @@ -393608,7 +397720,7 @@ relationship: part_of UBERON:6003018 ! insect adult thorax id: UBERON:6003023 name: insect adult abdomen def: "Abdomen of the adult." [FlyBase:FBim0000809, FlyBase:FBim0000810] -xref: FBbt:00003023 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003023 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000020 ! insect abdomen is_a: UBERON:6003005 ! insect adult tagma intersection_of: UBERON:6000020 ! insect abdomen @@ -393619,7 +397731,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003024 name: insect adult abdominal segment def: "Any abdominal segment (UBERON:6000021) that is part of some adult abdomen (UBERON:6003023)." [FBC:auto_generated_definition] -xref: FBbt:00003024 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003024 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6000021 ! insect abdominal segment is_a: UBERON:6003006 ! insect adult segment intersection_of: UBERON:6000021 ! insect abdominal segment @@ -393631,7 +397743,7 @@ id: UBERON:6003039 name: dorsal trunk of insect trachea def: "Longitudinal tracheal branch of the insect tracheal system, dorsal to the lateral trunk." [FBbt:00005043] synonym: "dorsal trunk" BROAD SENSU [NCBITaxon:50557] -xref: FBbt:00003039 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003039 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005043 ! insect trachea [Term] @@ -393646,7 +397758,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003259 name: insect adult somatic muscle def: "Muscle attached to the inner surface of the adult body wall, extending between articulated or flexibly joined areas, that serves to move the parts of the exoskeleton." [FlyBase:FBrf0007735] -xref: FBbt:00003259 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003259 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005090 ! muscle structure intersection_of: UBERON:0005090 ! muscle structure intersection_of: part_of UBERON:6003218 ! insect adult muscle system @@ -393656,7 +397768,7 @@ relationship: part_of UBERON:6003218 ! insect adult muscle system id: UBERON:6003559 name: insect adult nervous system def: "Nervous system of the adult insect." [ISBN:978-087969828-7] -xref: FBbt:00003559 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003559 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001016 ! nervous system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0007023 ! adult organism @@ -393665,7 +397777,7 @@ relationship: part_of UBERON:0007023 ! adult organism id: UBERON:6003623 name: insect adult central nervous system def: "Central nervous system of the adult." [FBC:SPR] -xref: FBbt:00003623 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003623 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001017 ! central nervous system relationship: part_of UBERON:6003559 ! insect adult nervous system @@ -393673,7 +397785,7 @@ relationship: part_of UBERON:6003559 ! insect adult nervous system id: UBERON:6003624 name: insect adult brain def: "Brain of the adult." [FBC:SPR] -xref: FBbt:00003624 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003624 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000955 ! brain relationship: part_of UBERON:6003007 ! insect adult head relationship: part_of UBERON:6003623 ! insect adult central nervous system @@ -393683,7 +397795,7 @@ id: UBERON:6003626 name: insect supraesophageal ganglion def: "The pre-oral neuropils of the brain located above and some of it below the esophagus, comprising three fused ganglia (protocerebrum, deutocerebrum, and tritocerebrum) in the head." [FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "SPG" RELATED [] -xref: FBbt:00003626 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003626 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0003339 ! ganglion of central nervous system relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain relationship: part_of UBERON:0000955 ! brain @@ -393693,7 +397805,7 @@ id: UBERON:6003627 name: insect protocerebrum def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "protocerebral neuromere" EXACT [FlyBase:FBrf0092819] -xref: FBbt:00003627 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003627 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:6000008 ! labral segment @@ -393707,7 +397819,7 @@ synonym: "adult central body complex" EXACT [] synonym: "central body" RELATED [] synonym: "central body complex" RELATED [] synonym: "CX" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] -xref: FBbt:00003632 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00003632 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6041000 ! insect synaptic neuropil block relationship: develops_from UBERON:6007070 ! insect centro-posterior medial synaptic neuropil domain relationship: part_of UBERON:6007145 ! insect adult protocerebrum @@ -393727,7 +397839,7 @@ name: insect sex comb def: "A row of darkly pigmented, male specific chaetae located on the prothoracic metatarsal segment of the prothoracic leg. The number of chaetae (teeth) per sex comb varies between individuals, e.g.- Hannah-Alava and Stern report 10-13." [FlyBase:FBrf0011482, FlyBase:FBrf0012178] synonym: "ctenidium" EXACT [FlyBase:FBrf0012178] synonym: "metatarsal comb" EXACT [] -xref: FBbt:00004296 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004296 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6100153 ! insect sensilla row relationship: part_of UBERON:6007020 ! insect metatarsus of male prothoracic leg @@ -393736,7 +397848,7 @@ id: UBERON:6004340 name: insect wing hair def: "The posteriorly oriented trichome of a cell of the wing blade. Each cell makes one of these trichomes at its posterior vertex." [FBC:DOS] synonym: "wing trichome" RELATED [] -xref: FBbt:00004340 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004340 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004979 ! insect trichome relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -393746,7 +397858,7 @@ name: insect sclerite def: "A region of integument whose external cuticular part is a hard, sclerotized plate." [FBC:gg] synonym: "integumentary plate" EXACT [] synonym: "plate" RELATED [] -xref: FBbt:00004475 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004475 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] @@ -393754,7 +397866,7 @@ id: UBERON:6004476 name: insect tergite def: "The dorsal plate (sclerite) of an adult abdominal segment." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "abdominal tergite" EXACT [] -xref: FBbt:00004476 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004476 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004475 ! insect sclerite relationship: develops_from UBERON:6001790 ! insect histoblast nest relationship: part_of UBERON:6003024 ! insect adult abdominal segment @@ -393765,13 +397877,13 @@ id: UBERON:6004477 name: insect sternite def: "An adult ventral sclerite." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "abdominal sternite" EXACT [] -xref: FBbt:00004477 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004477 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004475 ! insect sclerite [Term] id: UBERON:6004481 name: insect adult external head -xref: FBbt:00004481 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004481 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003007 ! insect adult head relationship: part_of UBERON:6005396 ! insect adult integumentary system @@ -393781,7 +397893,7 @@ id: UBERON:6004519 name: insect arista def: "Highly specialised, slender sixth segment of the antenna covered in bristle-like outgrowths known as laterals. It extends laterally from the dorsal region of the third segment of the antenna." [FlyBase:FBrf0007734, FlyBase:FBrf0031004, FlyBase:FBrf0137012] synonym: "segment 6" EXACT [] -xref: FBbt:00004519 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004519 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6007149 ! segment of antenna relationship: develops_from UBERON:6110811 ! insect presumptive arista @@ -393790,7 +397902,7 @@ relationship: part_of UBERON:0000972 ! antenna [Term] id: UBERON:6004520 name: insect mouthpart -xref: FBbt:00004520 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004520 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:6004481 ! insect adult external head @@ -393798,7 +397910,7 @@ relationship: part_of UBERON:6004481 ! insect adult external head id: UBERON:6004521 name: insect clypeus def: "The anterior part of the head between the frons and the labrum, which occasionally may fuse with either one to form the frontoclypeus and the clypeolabrum. In the context of Drosophila refers to a round structure on the center of the frontal adult external head." [FBC:gg, FlyBase:FBrf0166419] -xref: FBbt:00004521 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004521 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004475 ! insect sclerite relationship: develops_from UBERON:6001765 ! insect clypeo-labral disc @@ -393808,7 +397920,7 @@ relationship: part_of UBERON:6004540 ! insect basiproboscis id: UBERON:6004535 name: insect proboscis def: "The trunk-like extension of adult head, forming a protrusible sucking proboscis for the ingestion of liquid food (pg 425 Miller et al., 1950; pg 383, Ferris et al., 1950)." [FlyBase:FBrf0007734, FlyBase:FBrf0007735] -xref: FBbt:00004535 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004535 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001764 ! insect labial disc @@ -393817,7 +397929,7 @@ relationship: part_of UBERON:6004520 ! insect mouthpart [Term] id: UBERON:6004540 name: insect basiproboscis -xref: FBbt:00004540 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004540 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:6004520 ! insect mouthpart @@ -393825,7 +397937,7 @@ relationship: part_of UBERON:6004520 ! insect mouthpart id: UBERON:6004551 name: insect adult external thorax def: "External structures that make up the adult insect thorax." [ISBN:9780879698287] -xref: FBbt:00004551 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004551 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003018 ! insect adult thorax relationship: part_of UBERON:6005396 ! insect adult integumentary system @@ -393834,14 +397946,14 @@ relationship: part_of UBERON:6005396 ! insect adult integumentary system id: UBERON:6004552 name: insect tergum def: "The upper, originally unpaired plate of the segmented insect body, which either independently or fused with a ventral plate covers the body dorsally, specifically that of the thorax." [FlyBase:FBrf0166419] -xref: FBbt:00004552 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004552 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:6004551 ! insect adult external thorax [Term] id: UBERON:6004578 name: insect adult external mesothorax -xref: FBbt:00004578 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004578 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007285 ! insect segmental subdivision of integument relationship: part_of UBERON:6003021 ! insect adult mesothoracic segment relationship: part_of UBERON:6004551 ! insect adult external thorax @@ -393849,7 +397961,6 @@ relationship: part_of UBERON:6004551 ! insect adult external thorax [Term] id: UBERON:6004579 name: insect dorsal mesothorax -xref: FBbt:00004579 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6007284 ! insect region of integument relationship: develops_from UBERON:6001778 ! insect wing disc @@ -393862,7 +397973,7 @@ def: "The dorsal sclerites (tergites) of the mesothorax." [FBC:DOS] synonym: "alinotum" EXACT [FlyBase:FBrf0111704] synonym: "mesonotum" EXACT [FlyBase:FBrf0166419] synonym: "notum" BROAD [] -xref: FBbt:00004580 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004580 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004552 ! insect tergum relationship: develops_from UBERON:6006032 ! insect mesothoracic tergum primordium @@ -393873,7 +397984,7 @@ id: UBERON:6004646 name: insect tarsal segment def: "A segment of the tarsus of the adult leg. The first tarsal segment, the metatarsus, is proximally connected to the tibia. Tarsal segments are covered in 8 longitudinal rows of bristles, with row 1 being the most ventral." [FlyBase:FBim0000836.html, FlyBase:FBrf0007734, FlyBase:FBrf0012178] synonym: "tarsomere" EXACT [FlyBase:FBrf0111704] -xref: FBbt:00004646 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004646 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007150 ! insect segment of leg relationship: part_of UBERON:0005895 ! insect leg @@ -393886,7 +397997,7 @@ synonym: "basitarsus" EXACT [FlyBase:FBrf0111704] synonym: "first segment of the tarsus" EXACT [] synonym: "first tarsal segment" EXACT [] synonym: "tarsal segment 1" EXACT [] -xref: FBbt:00004648 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004648 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004646 ! insect tarsal segment [Term] @@ -393895,7 +398006,7 @@ name: insect prothoracic leg def: "Leg of the prothoracic segment." [FBC:DOS] synonym: "first leg" EXACT [] synonym: "T1 leg" EXACT [] -xref: FBbt:00004663 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004663 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005895 ! insect leg intersection_of: UBERON:0005895 ! insect leg @@ -393907,7 +398018,7 @@ relationship: part_of UBERON:6003020 ! insect adult prothoracic segment id: UBERON:6004668 name: insect prothoracic tarsal segment def: "Tarsal segment of the adult prothoracic leg." [FBC:MMC] -xref: FBbt:00004668 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004668 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004646 ! insect tarsal segment intersection_of: UBERON:6004646 ! insect tarsal segment @@ -393922,7 +398033,7 @@ synonym: "prothoracic basitarsus" EXACT [FlyBase:FBrf0111704] synonym: "prothoracic tarsal segment 1" EXACT [] synonym: "T1 tarsal segment 1" EXACT [] synonym: "T1 Ts1" EXACT [FlyBase:FBrf0219028] -xref: FBbt:00004670 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004670 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004648 ! insect metatarsus is_a: UBERON:6004668 ! insect prothoracic tarsal segment intersection_of: UBERON:6004648 ! insect metatarsus @@ -393933,7 +398044,7 @@ relationship: part_of UBERON:6004663 ! insect prothoracic leg [Term] id: UBERON:6004788 name: insect adult external abdomen -xref: FBbt:00004788 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004788 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007289 ! insect tagmatic subdivision of integument relationship: part_of UBERON:6003023 ! insect adult abdomen relationship: part_of UBERON:6005396 ! insect adult integumentary system @@ -393942,7 +398053,7 @@ relationship: part_of UBERON:6005396 ! insect adult integumentary system id: UBERON:6004823 name: insect analia def: "The set of external structures of adult abdominal segment(s) that makes up the anal apparatus." [PMID:27747420] -xref: FBbt:00004823 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004823 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001784 ! insect genital disc relationship: part_of UBERON:6004788 ! insect adult external abdomen @@ -393950,14 +398061,14 @@ relationship: part_of UBERON:6004788 ! insect adult external abdomen [Term] id: UBERON:6004824 name: insect female analia -xref: FBbt:00004824 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004824 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004823 ! insect analia relationship: develops_from UBERON:6001787 ! insect female genital disc [Term] id: UBERON:6004825 name: insect male analia -xref: FBbt:00004825 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004825 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004823 ! insect analia relationship: develops_from UBERON:6001785 ! insect male genital disc @@ -393966,28 +398077,28 @@ id: UBERON:6004979 name: insect trichome def: "Non-innervated projection of the cuticle around an actin-rich cellular process of an underlying epidermal cell." [FBC:DOS] synonym: "cell hair" RELATED [] -xref: FBbt:00004979 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004979 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007245 ! insect cuticular specialization [Term] id: UBERON:6004983 name: insect embryonic/larval cuticle synonym: "larval cuticle" EXACT [] -xref: FBbt:00004983 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004983 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001001 ! chitin-based cuticle relationship: part_of UBERON:6005393 ! insect embryonic/larval integumentary system [Term] id: UBERON:6004986 name: insect third instar larval cuticle -xref: FBbt:00004986 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00004986 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004983 ! insect embryonic/larval cuticle [Term] id: UBERON:6005023 name: insect imaginal precursor def: "Structure that proliferates to produce a larval imaginal disc and which gives rise to adult tissues (Bate and Martinez Arias, 1991)." [FlyBase:FBrf0053815, FlyBase:FBrf0064789] -xref: FBbt:00005023 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005023 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005423 ! developing anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -393997,7 +398108,7 @@ name: insect tracheal pit def: "Deep and narrow pit formed by the invagination of a tracheal placode in a late extended germ band embryo. Invagination of the placode begins during stage 11. Branches begin to bud from the pit during stage 11, with a dorsal and ventral stem being apparent by mid-stage 12. The pit closes over during stage 13. There are 10 pairs of tracheal pits - one pair in each tracheal metamere (each segment from T2 to A8). Pits are located in the central one third of each parasegment, with the most anterior in parasegment 4 and the most posterior in parasegment 14." [FlyBase:FBrf0064787, FlyBase:FBrf0089570] synonym: "embryonic tracheal pit" EXACT [] synonym: "tracheal sac" EXACT [FlyBase:FBrf0147036] -xref: FBbt:00005036 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005036 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005037 ! insect tracheal primordium relationship: part_of UBERON:0000922 ! embryo @@ -394008,7 +398119,7 @@ def: "Primordium of a single tracheal metamere of the embryonic/larval tracheal synonym: "P2 TrachP" EXACT [FBC:DOS] synonym: "tracheal placode" RELATED [] synonym: "TrachP3" RELATED [] -xref: FBbt:00005037 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005037 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6007046 ! insect dorsal ectoderm derivative @@ -394021,7 +398132,7 @@ id: UBERON:6005043 name: insect trachea def: "Cuticle-lined epithelial tube that forms part of the insect tracheal system." [FBbt:00005043] synonym: "trachea" BROAD SENSU [NCBITaxon:50557] -xref: FBbt:00005043 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005043 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0003127 ! open tracheal system trachea relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394029,7 +398140,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6005054 name: insect spiracle def: "Opening of the tracheal system on the surface of the body." [FlyBase:FBrf0166419] -xref: FBbt:00005054 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005054 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007288 ! insect integumentary specialisation relationship: part_of UBERON:0005155 ! open tracheal system @@ -394047,7 +398158,7 @@ name: insect stomatogastric nervous system def: "A group of small, interconnected ganglia situated posterior to and between the two brain hemispheres and associated with the pharynx, esophagus and aorta." [FlyBase:FBrf0089570, PMID:12966498] synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704] synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704] -xref: FBbt:00005096 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005096 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda @@ -394057,7 +398168,7 @@ relationship: part_of UBERON:0001017 ! central nervous system id: UBERON:6005168 name: insect external sensory organ synonym: "sensillum" NARROW [] -xref: FBbt:00005168 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005168 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394067,7 +398178,7 @@ id: UBERON:6005177 name: insect chaeta def: "A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized." [FlyBase:FBrf0111704, FlyBase:FBrf0166419] synonym: "sensillum chaeticum" EXACT [FlyBase:FBrf0111704] -xref: FBbt:00005177 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005177 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007232 ! insect eo-type sensillum [Term] @@ -394075,7 +398186,7 @@ id: UBERON:6005378 name: insect wing margin def: "The border or edge of the wing. It separates the dorsal and ventral compartments." [FBC:gg] synonym: "margin" BROAD [] -xref: FBbt:00005378 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005378 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -394083,7 +398194,7 @@ relationship: part_of UBERON:0000984 ! imaginal disc-derived wing id: UBERON:6005380 name: insect pharynx def: "Section of the insect foregut anterior to the esophagus." [FBbt:00005380, http://orcid.org/0000-0002-6601-2165] -xref: FBbt:00005380 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005380 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004921 {source="FBbt"} ! subdivision of digestive tract is_a: UBERON:0006562 {note="parent may be obsoleted"} ! pharynx relationship: part_of UBERON:0003929 {source="FBbt"} ! digestive tract epithelium @@ -394092,7 +398203,7 @@ relationship: part_of UBERON:0003929 {source="FBbt"} ! digestive tract epitheliu id: UBERON:6005393 name: insect embryonic/larval integumentary system synonym: "larval integumentary system" RELATED [] -xref: FBbt:00005393 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005393 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002416 ! integumental system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002548 ! larva @@ -394102,7 +398213,7 @@ id: UBERON:6005396 name: insect adult integumentary system synonym: "adult external" RELATED [] synonym: "adult integument" EXACT [] -xref: FBbt:00005396 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005396 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002416 ! integumental system relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0007023 ! adult organism @@ -394124,7 +398235,7 @@ is_obsolete: true [Term] id: UBERON:6005427 name: insect ectoderm anlage -xref: FBbt:00005427 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005427 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0007688 ! anlage relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394164,7 +398275,7 @@ consider: UBERON:6005538 id: UBERON:6005461 name: insect circulatory system primordium synonym: "embryonic/larval circulatory system specific anlage" RELATED [] -xref: FBbt:00005461 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005461 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394173,7 +398284,7 @@ id: UBERON:6005467 name: insect lymph gland primordium def: "Primordium of the insect embryo that gives rise to the embryonic/larval lymph gland." [ISBN:9783540570790] synonym: "lymph gland specific anlage" RELATED [] -xref: FBbt:00005467 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005467 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6005461 ! insect circulatory system primordium relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 @@ -394184,7 +398295,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6005514 name: insect adult clypeo-labral primordium synonym: "A AdCly" RELATED [FBC:DOS] -xref: FBbt:00005514 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005514 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:6001648 ! insect embryonic imaginal precursor relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium @@ -394196,7 +398307,7 @@ id: UBERON:6005526 name: insect dorsal epidermis primordium synonym: "dorEpiP2" RELATED [] synonym: "dorsal epidermis specific anlage" RELATED [] -xref: FBbt:00005526 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005526 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6007046 ! insect dorsal ectoderm derivative @@ -394208,7 +398319,7 @@ id: UBERON:6005533 name: insect ventral epidermis primordium synonym: "P2 iVenEp" RELATED [FBC:DOS] synonym: "venEpiP2" RELATED [] -xref: FBbt:00005533 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005533 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025993 ! insect ventral ectoderm derivative @@ -394219,7 +398330,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6005538 name: insect clypeo-labral primordium synonym: "ClyP2" RELATED [] -xref: FBbt:00005538 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005538 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative @@ -394244,7 +398355,7 @@ name: insect ventral ectoderm def: "Ventral part of the insect trunk ectoderm." [ISBN:9783540570790] synonym: "P2 VenEc" RELATED [FBC:DOS] synonym: "venEc" RELATED [] -xref: FBbt:00005558 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005558 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:6007045 ! insect trunk ectoderm @@ -394253,7 +398364,7 @@ id: UBERON:6005569 name: insect presumptive embryonic/larval tracheal system def: "The sum of all the structures in the embryo that will develop into the embryonic/larval tracheal system. This corresponds to the tracheal primordia and their component tracheal branch primordia along with primordia of the spiracles." [FBC:DOS] synonym: "embryonic tracheal system" RELATED [FBC:DOS] -xref: FBbt:00005569 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005569 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007116 ! insect presumptive embryonic/larval system [Term] @@ -394265,7 +398376,7 @@ synonym: "dorsocaudal pharyngeal sense organ" RELATED [] synonym: "embryonic Bolwig's organ" EXACT [] synonym: "embryonic visual system" EXACT [] synonym: "larval Bolwig's organ" EXACT [] -xref: FBbt:00005805 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005805 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000970 ! eye is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6002642 ! insect embryonic/larval ocular segment sensillum @@ -394282,7 +398393,7 @@ name: insect Bolwig organ primordium def: "Primordium of the insect embryo that gives rise to the larval Bolwig organ." [ISBN:9783540570790] synonym: "Bolwig's organ primordium" EXACT [] synonym: "P1 BolOrg" RELATED [FBC:DOS] -xref: FBbt:00005830 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005830 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6025991 ! insect anterior ectoderm derivative @@ -394294,14 +398405,14 @@ relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:6005831 name: insect dorsal imaginal precursor -xref: FBbt:00005831 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005831 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6005023 ! insect imaginal precursor [Term] id: UBERON:6005913 name: insect arista lateral def: "A bristle-like, non-innervated outgrowth of the arista. Each lateral is formed from the outgrowth of a single polyploid central core cell." [FlyBase:FBrf0137012] -xref: FBbt:00005913 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00005913 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004979 ! insect trichome relationship: part_of UBERON:6004519 ! insect arista @@ -394309,7 +398420,7 @@ relationship: part_of UBERON:6004519 ! insect arista id: UBERON:6006011 name: insect pharate adult def: "The developing adult after pupal-adult apolysis, i.e. from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion." [FlyBase:FBrf0049147] -xref: FBbt:00006011 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00006011 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000468 ! multicellular organism relationship: develops_from UBERON:0003143 ! pupa relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394318,7 +398429,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6006032 name: insect mesothoracic tergum primordium def: "Region of the dorsal mesothoracic disc that will develop into the mesothoracic tergum." [FBC:DOS, FlyBase:FBrf0027793] -xref: FBbt:00006032 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00006032 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:6001778 ! insect wing disc @@ -394327,7 +398438,7 @@ relationship: part_of UBERON:6001778 ! insect wing disc id: UBERON:6007020 name: insect metatarsus of male prothoracic leg def: "First tarsal segment of the male prothoracic leg. In contrast to females, it has a sex comb, central bristle and 5 to 6 transverse rows of bristles (TR)." [FlyBase:FBrf0012178, FlyBase:FBrf0031004, FlyBase:FBrf0219028] -xref: FBbt:00007020 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007020 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6004670 ! insect prothoracic metatarsus relationship: part_of UBERON:0003101 ! male organism @@ -394335,7 +398446,7 @@ relationship: part_of UBERON:0003101 ! male organism id: UBERON:6007045 name: insect trunk ectoderm def: "The region of the ectoderm posterior to the cephalic furrow." [FBC:DOS] -xref: FBbt:00007045 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007045 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -394355,7 +398466,7 @@ synonym: "centro-posterior medial neuropil" EXACT [] synonym: "centro-posterior medial synaptic neuropil domain" EXACT [] synonym: "CPM" RELATED [] synonym: "larval central complex" EXACT [] -xref: FBbt:00007070 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007070 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6040007 ! insect synaptic neuropil domain relationship: part_of UBERON:6001925 ! insect embryonic/larval protocerebrum @@ -394363,7 +398474,7 @@ relationship: part_of UBERON:6001925 ! insect embryonic/larval protocerebrum id: UBERON:6007116 name: insect presumptive embryonic/larval system def: "The sum of all the developing presumptive components of a specific embryonic/larval system in an embryo." [FBC:DOS] -xref: FBbt:00007116 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007116 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6040003 ! insect non-connected developing system intersection_of: UBERON:6040003 ! insect non-connected developing system @@ -394374,7 +398485,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6007145 name: insect adult protocerebrum def: "Protocerebrum of the adult brain." [FBC:SPR] -xref: FBbt:00007145 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007145 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003627 ! insect protocerebrum relationship: part_of UBERON:6003011 ! insect adult labral segment relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion @@ -394383,7 +398494,7 @@ relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion id: UBERON:6007149 name: segment of antenna def: "Any appendage segment that is part of some antenna." [FBC:auto_generated_definition] -xref: FBbt:00007149 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007149 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: part_of UBERON:0000972 ! antenna @@ -394393,7 +398504,7 @@ relationship: part_of UBERON:0000972 ! antenna id: UBERON:6007150 name: insect segment of leg def: "Any appendage segment that is part of some leg." [FBC:auto_generated_definition] -xref: FBbt:00007150 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007150 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: part_of UBERON:0005895 ! insect leg @@ -394404,7 +398515,7 @@ relationship: part_of UBERON:0005895 ! insect leg id: UBERON:6007231 name: insect external sensillum def: "Sensillum which is embedded in the body wall and has a specific cuticular structure involved in the transduction of some sensory signal as a part." [FBC:DOS] -xref: FBbt:00007231 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007231 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6005168 ! insect external sensory organ @@ -394413,14 +398524,14 @@ id: UBERON:6007232 name: insect eo-type sensillum def: "Sensillum with innervated external cuticular sensory structure consisting of one or more bipolar sensory neurons, and 3 support cells: a trichogen cell which makes the external cuticular sensory structure, a thecogen cell which makes the socket that holds the base of the external sensory structure and a tormogen cell which makes the cuticular matrix (cap) at the tip of the innervating dendrite(s)." [FlyBase:FBrf0089570] synonym: "eso" RELATED [] -xref: FBbt:00007232 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007232 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007231 ! insect external sensillum [Term] id: UBERON:6007233 name: insect internal sensillum def: "Sensillum that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] -xref: FBbt:00007233 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007233 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6007373 ! insect internal sense organ @@ -394429,7 +398540,7 @@ id: UBERON:6007240 name: insect embryonic/larval sensillum def: "Any sensillum (UBERON:6007152) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] synonym: "larval sensillum" EXACT [] -xref: FBbt:00007240 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007240 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0002536 ! arthropod sensillum is_a: UBERON:6002639 ! insect larval sense organ intersection_of: UBERON:0002536 ! arthropod sensillum @@ -394441,7 +398552,7 @@ id: UBERON:6007242 name: insect embryonic/larval head sensillum def: "Any sensillum (UBERON:6007152) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sensillum" NARROW [] -xref: FBbt:00007242 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007242 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000963 ! head sensillum is_a: UBERON:6007240 ! insect embryonic/larval sensillum is_a: UBERON:6007280 ! insect embryonic/larval head sense organ @@ -394452,7 +398563,7 @@ relationship: part_of UBERON:6001730 ! insect larval head [Term] id: UBERON:6007245 name: insect cuticular specialization -xref: FBbt:00007245 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007245 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394462,7 +398573,7 @@ relationship: part_of UBERON:0001001 ! chitin-based cuticle id: UBERON:6007248 name: insect chorionic specialization def: "Specialized structure of the chorion of the egg." [FBC:MMC] -xref: FBbt:00007248 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007248 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000920 ! egg chorion @@ -394472,7 +398583,7 @@ id: UBERON:6007280 name: insect embryonic/larval head sense organ def: "Any sense organ (UBERON:6005155) that is part of some larval head (UBERON:6001730)." [FBC:auto_generated_definition] synonym: "larval head sense organ" EXACT [] -xref: FBbt:00007280 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007280 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6002639 ! insect larval sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: part_of UBERON:6001730 ! insect larval head @@ -394482,7 +398593,7 @@ relationship: part_of UBERON:6001730 ! insect larval head id: UBERON:6007284 name: insect region of integument def: "A region of cuticle and its underlying epidermis." [FBC:DOS] -xref: FBbt:00007284 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007284 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002416 ! integumental system @@ -394491,26 +398602,26 @@ relationship: part_of UBERON:0002416 ! integumental system id: UBERON:6007285 name: insect segmental subdivision of integument def: "A segmental subdivision of the integument of the whole animal." [FBC:DOS] -xref: FBbt:00007285 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007285 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007288 name: insect integumentary specialisation -xref: FBbt:00007288 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007288 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007289 name: insect tagmatic subdivision of integument -xref: FBbt:00007289 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007289 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6007284 ! insect region of integument [Term] id: UBERON:6007331 name: insect segmental subdivision of organ system def: "The part of some organism that is part of some specified segment." [FBC:DOS] -xref: FBbt:00007331 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007331 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394518,7 +398629,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6007373 name: insect internal sense organ def: "Sense organ that is internal to the animal - i.e. having no part that is part of the cuticle." [FBC:DOS] -xref: FBbt:00007373 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007373 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000020 ! sense organ relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394526,7 +398637,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6007424 name: insect epithelial furrow def: "A region of an epithelium that folds inwards from the epithelial plane to form a furrow." [FBC:DOS] -xref: FBbt:00007424 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00007424 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000483 ! epithelium relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394542,7 +398653,7 @@ id: UBERON:6016022 name: insect abdominal histoblast primordium def: "A primordium of the insect embryo that gives rise to the larval abdominal histoblast nests." [ISBN:9780879698997] synonym: "abdominal histoblast specific anlage" RELATED [] -xref: FBbt:00016022 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00016022 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: dc-contributor https://orcid.org/0000-0001-9676-7393 @@ -394599,7 +398710,7 @@ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/u id: UBERON:6040003 name: insect non-connected developing system def: "The sum of all the anlagen and primordia that will develop into a single system." [FBC:DOS] -xref: FBbt:00040003 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00040003 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0034923 ! disconnected anatomical group relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394608,7 +398719,7 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta id: UBERON:6040005 name: insect synaptic neuropil def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] -xref: FBbt:00040005 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00040005 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0000465 ! material anatomical entity relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002606 ! neuropil @@ -394619,7 +398730,7 @@ name: insect synaptic neuropil domain def: "Region of synaptic neuropil whose boundaries are largely discontinuities in the density of presynaptic terminals: high density in the synaptic neuropil domain, lower or zero density outside this region. These boundaries often correspond to a boundary with glial sheath, tract neuropil or cortex." [FlyBase:FBrf0155900, FlyBase:FBrf0224194, http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "fibrous neuropil" RELATED [] synonym: "synaptic neuropil" RELATED [] -xref: FBbt:00040007 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00040007 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0011215 ! central nervous system cell part cluster relationship: part_of UBERON:6040005 ! insect synaptic neuropil @@ -394628,7 +398739,7 @@ id: UBERON:6041000 name: insect synaptic neuropil block def: "A closely associated group of synaptic neuropil domains." [FBC:DOS, FBC:KI] synonym: "level 1 neuropil" EXACT [FlyBase:FBrf0224194] -xref: FBbt:00041000 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00041000 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034923 ! disconnected anatomical group relationship: part_of UBERON:6040005 ! insect synaptic neuropil @@ -394643,7 +398754,7 @@ consider: UBERON:0011676 id: UBERON:6100153 name: insect sensilla row def: "A row of sensilla." [FBC:DOS] -xref: FBbt:00100153 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00100153 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0034926 ! anatomical row relationship: composed_primarily_of UBERON:0002536 ! arthropod sensillum relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -394657,7 +398768,7 @@ synonym: "cerebrum" RELATED [] synonym: "CRG" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] synonym: "SPG" RELATED [] synonym: "supraesophageal ganglion" RELATED [] -xref: FBbt:00110636 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00110636 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:6003626 ! insect supraesophageal ganglion relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain relationship: part_of UBERON:6003624 ! insect adult brain @@ -394666,7 +398777,7 @@ relationship: part_of UBERON:6003624 ! insect adult brain id: UBERON:6110746 name: insect presumptive prothoracic metatarsus def: "Region of the prothoracic leg disc that will develop into the prothoracic metatarsus." [FlyBase:FBrf0219028] -xref: FBbt:00110746 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00110746 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001781 ! insect prothoracic leg disc @@ -394675,7 +398786,7 @@ relationship: part_of UBERON:6001781 ! insect prothoracic leg disc id: UBERON:6110811 name: insect presumptive arista def: "Region of the antennal disc that will develop into the arista." [FlyBase:FBrf0031004] -xref: FBbt:00110811 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} +xref: FBbt:00110811 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration"} is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001767 ! insect antennal disc @@ -394685,10 +398796,6 @@ id: UBERON:7500033 name: obsolete distal-most point of medial condyle of femur def: "OBSOLETE The distal-most point of the medial condyle of a femur." [https://orcid.org/0000-0003-2699-3066] comment: too specific of a term -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_R.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_L.glb" xsd:anyURI -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_R.glb" xsd:anyURI is_obsolete: true replaced_by: UBERON:0009984 @@ -396217,7 +400324,8 @@ is_a: UBERON:0034944 ! zone of organ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:8410026 @@ -396232,7 +400340,8 @@ is_a: UBERON:0034944 ! zone of organ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:8410027 @@ -396246,7 +400355,8 @@ is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens -property_value: depiction "https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.1/assets/VH_M_Prostate.glb" xsd:anyURI +property_value: depiction "https://cdn.humanatlas.io/digital-objects/ref-organ/prostate-male/v1.2/assets/3d-vh-m-prostate.glb" xsd:anyURI [Term] id: UBERON:8410028 @@ -396655,11 +400765,13 @@ relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens id: UBERON:8410059 name: submucous nerve plexus of colon def: "Submucous nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] +subset: human_reference_atlas is_a: UBERON:0005304 ! submucous nerve plexus intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:0001155 ! colon relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0001155 ! colon +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:8410060 @@ -396702,11 +400814,13 @@ property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2104" xsd id: UBERON:8410063 name: myenteric nerve plexus of small intestine def: "Myenteric nerve plexus that is part of the small intestine." [http://orcid.org/0000-0003-3440-1876] +subset: human_reference_atlas is_a: UBERON:0002439 ! myenteric nerve plexus intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:0002108 ! small intestine relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0002108 ! small intestine +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:8410064 @@ -397091,7 +401205,7 @@ name: cerebral nuclei def: "One of three components of the cerebrum that is a composite structure of the endbrain defined on the basis of origin from the ventricular ridge of the embryonic Encephalon. It consists of the extended striatum and the extended pallidum." [neuronames:2677] comment: This was added as a more precise mapping to the Allen brain atlas (as opposed to collection of basal ganglia) synonym: "CNU" EXACT [MBA:623] -xref: BTO:0006534 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006534 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} xref: DHBA:10331 xref: HBA:4275 xref: MBA:623 @@ -397753,7 +401867,7 @@ id: UBERON:8450002 name: excretory system def: "An anatomical system that eliminates waste products that arise as a result of metabolic activity." [GO:0007588] subset: human_reference_atlas -xref: BTO:0006338 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0006338 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0000467 ! anatomical system intersection_of: UBERON:0000467 ! anatomical system intersection_of: capable_of GO:0046903 ! secretion @@ -398234,7 +402348,7 @@ property_value: dcterms-date "2022-11-22T09:15:50Z" xsd:dateTime id: UBERON:8480040 name: ovarian fluid def: "Fish ovary secretion released with eggs." [PMID:8526977] -xref: BTO:0004569 {mapping:justification="https://w3id.org/semapv/vocab/ManualMappingCuration", author:id="https://orcid.org/0000-0003-4423-4370", mapping:provider="https://github.com/biopragmatics/biomappings"} +xref: BTO:0004569 {sssom:mapping_justification="https://w3id.org/semapv/vocab/ManualMappingCuration", sssom:author_id="https://orcid.org/0000-0003-4423-4370", sssom:mapping_provider="https://github.com/biopragmatics/biomappings"} is_a: UBERON:0006537 ! female reproductive gland secretion relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 relationship: in_taxon NCBITaxon:7898 ! Actinopterygii @@ -399811,6 +403925,7 @@ property_value: dcterms-date "2023-12-12T11:50:32Z" xsd:dateTime id: UBERON:8600026 name: chorionic villous tree def: "A tree-like structure formed by chorionic villi that sprouts from the chorionic plate in the placental disc. The arborous shape of the chorionic villous tree provides maximal contact area with maternal blood in the intervillous space." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "placental villous tree" EXACT [PMID:9260835] synonym: "villous tree" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0004120 ! mesoderm-derived structure @@ -399818,6 +403933,7 @@ relationship: composed_primarily_of UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of RO:0002577 ! system relationship: part_of UBERON:8600038 ! placental disc +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:0004027 ! chorionic plate property_value: dcterms-date "2023-12-12T11:57:24Z" xsd:dateTime @@ -399825,52 +403941,62 @@ property_value: dcterms-date "2023-12-12T11:57:24Z" xsd:dateTime id: UBERON:8600027 name: chorionic stem villus def: "A chorionic villus that provides structural support to the villous tree. A chorionic stem villus is characterized by a condensed fibrous stroma in which fetal arteries, veins, arterioles, and venules are embedded. It represents a distributing framework for fetal chorionic circulation, supplying the floating villi. It can exhibit a diameter ranging from approximately 3000 μm (trunci near the chorionic plate) to 80 μm (smallest ramuli chorii)." [doi:10.1007/978-3-030-84725-8, PMID:9260835] +subset: human_reference_atlas synonym: "placental stem villus" EXACT [PMID:9260835] is_a: UBERON:0007106 ! chorionic villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: develops_from UBERON:8600029 ! chorionic immature intermediate villus relationship: part_of UBERON:8600026 ! chorionic villous tree +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:00:59Z" xsd:dateTime [Term] id: UBERON:8600028 name: chorionic mesenchymal villus def: "The first generation of a tertiary villus that is derived from a syncytial sprout by the invasion of the mesenchyme, in which blood vessels differentiate through vasculogenesis, and gradually transforms into a new immature intermediate villus. A chorionic mesenchymal villus has a thick trophoblastic covering, and cytotrophoblast cells are interposed between syncytium and the trophoblastic basal lamina over 50–100% of the surface. The stroma is characterized by loosely arranged collagen fibers that enmesh mesenchymal and some villous macrophages. The fetal capillaries are poorly developed." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "mesenchymal villus" BROAD [doi:10.1007/978-3-030-84725-8] is_a: UBERON:0009995 ! tertiary chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:38:12Z" xsd:dateTime [Term] id: UBERON:8600029 name: chorionic immature intermediate villus def: "A bulbous, immature chorionic villus that is formed of loose connective tissue with few fetal vessels. A chorionic immature intermediate villus develops from a chorionic mesenchymal villus, and is the forerunner of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8, PMID:487407, PMID:9260835] +subset: human_reference_atlas synonym: "immature intermediate villus" RELATED [doi:10.1007/978-3-030-84725-8, PMID:21452443] is_a: UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: develops_from UBERON:8600028 ! chorionic mesenchymal villus relationship: develops_into UBERON:8600027 ! chorionic stem villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:41:05Z" xsd:dateTime [Term] id: UBERON:8600030 name: chorionic terminal villus def: "The most distal part of a chorionic villus. A chorionic terminal villus is a grape-like structure characterized by a high degree of capillarization and highly dilated sinusoids. A terminal villus has less stroma and a discontinuous cytotrophoblast layer, and contains 4–6 fetal capillaries per cross section. It exhibits a diameter ranging from 40 to about 80 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] +subset: human_reference_atlas synonym: "terminal villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2023-12-12T13:41:16Z" xsd:dateTime [Term] id: UBERON:8600031 name: chorionic mature intermediate villus def: "A slender branch of a chorionic stem villus. A chorionic mature intermediate villus lacks fetal arterioles and venules in the stroma, which is composed of slender fetal capillaries embedded into a loose connective tissue that is rich in cells but poor in fibers. It exhibits a diameter ranging from 60 to about 100 μm." [doi:10.1007/978-3-030-84725-8, PMID:21452443] +subset: human_reference_atlas synonym: "mature intermediate villus" BROAD [PMID:21452443] is_a: UBERON:8600032 ! chorionic floating villus relationship: branching_part_of UBERON:8600026 ! chorionic villous tree relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: proximally_connected_to UBERON:8600027 ! chorionic stem villus property_value: dcterms-date "2023-12-12T13:41:28Z" xsd:dateTime @@ -399929,6 +404055,7 @@ property_value: dcterms-date "2024-01-09T16:48:17Z" xsd:dateTime id: UBERON:8600036 name: kidney loop of Henle long descending thin limb outer medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the outer medulla of the kidney." [PMID:33769951] +subset: human_reference_atlas synonym: "DTL2" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the outer medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part @@ -399936,12 +404063,14 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001293 ! outer medulla of kidney relationship: part_of UBERON:0005100 ! long descending thin limb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-15T13:28:03Z" xsd:dateTime [Term] id: UBERON:8600037 name: kidney loop of Henle long descending thin limb inner medulla def: "A section of the long descending thin limb of the loop of Henle that is part of the inner medulla of the kidney." [PMID:33769951] +subset: human_reference_atlas synonym: "DTL3" RELATED OMO:0003000 [PMID:33769951] synonym: "long descending limb of the loop of Henle in the inner medulla" EXACT [PMID:33769951] is_a: UBERON:0000064 ! organ part @@ -399949,22 +404078,26 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: dc-contributor https://orcid.org/0000-0003-2804-127X relationship: part_of UBERON:0001294 ! inner medulla of kidney relationship: part_of UBERON:0005100 ! long descending thin limb +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-15T13:32:25Z" xsd:dateTime [Term] id: UBERON:8600038 name: placental disc def: "A disc-shaped structure that is part of the placenta. A placental disc supports fetal development through the exchange of nutrients between maternal and fetal bloodstreams. The placental disc is structured to keep the blood streams separate, while maximizing surface area for the transport of nutrients between them, to maintain an immunological barrier." [PMID:35496035] +subset: human_reference_atlas synonym: "placental disk" EXACT [PMID:30133439] is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T17:50:20Z" xsd:dateTime [Term] id: UBERON:8600039 name: chorionic villous mesenchyme def: "A mesenchyme that is part of a chorionic villus." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003265 ! chorionic mesenchyme is_a: UBERON:0010377 ! mesenchyme from somatopleure @@ -399972,24 +404105,28 @@ intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0007106 ! chorionic villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0007106 ! chorionic villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:13:12Z" xsd:dateTime [Term] id: UBERON:8600040 name: chorionic stem villous blood vessel def: "A blood vessel that is part of a chorionic stem villus." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "stem villous vessel" BROAD [PMID:7547738] is_a: UBERON:0022358 ! placenta blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:8600027 ! chorionic stem villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600027 ! chorionic stem villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:14:32Z" xsd:dateTime [Term] id: UBERON:8600041 name: chorionic terminal villous capillary def: "A capillary that is part of a chorionic terminal villus. This capillary is generally narrow, but displays sinusoidal dilations along its length, often at the points of acute bends. These dilations bring the capillary endothelium into close contact with the overlying syncytiotrophoblast to form a vasculosyncytial membrane." [doi:10.1007/978-3-030-84725-8] +subset: human_reference_atlas synonym: "terminal villous capillary" BROAD [PMID:22461195] is_a: UBERON:0001982 ! capillary is_a: UBERON:0022358 ! placenta blood vessel @@ -399997,18 +404134,21 @@ intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:8600030 ! chorionic terminal villus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:8600030 ! chorionic terminal villus +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:16:47Z" xsd:dateTime [Term] id: UBERON:8600042 name: endometrial lymphatic vessel def: "A lymphatic vessel that is part of an endometrium." [PMID:23054374] +subset: human_reference_atlas is_a: UBERON:0001473 ! lymphatic vessel is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001295 ! endometrium relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0001295 ! endometrium +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2024-01-16T18:18:36Z" xsd:dateTime [Term] @@ -400124,6 +404264,760 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: located_in UBERON:8600025 ! intervillous space property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime +[Term] +id: UBERON:8600051 +name: segmental pulmonary vein +def: "A vein that is tributary of the main pulmonary veins and drains oxygenated blood from a segment of the lung." [https://radiologykey.com/6-pulmonary-artery-and-vein/] +xref: FMA:9411 +is_a: UBERON:0003512 ! lung blood vessel +is_a: UBERON:0005194 ! thoracic vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002048 ! lung +relationship: tributary_of UBERON:0002016 ! pulmonary vein +relationship: vessel_drains_blood_from UBERON:8600017 ! bronchopulmonary segment +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600052 +name: subsegmental pulmonary vein +def: "A vein that is tributary of the segmental pulmonary veins and drains oxygenated blood from a subsegment of the lung." [https://radiologykey.com/6-pulmonary-artery-and-vein/] +xref: FMA:9413 +is_a: UBERON:0003512 ! lung blood vessel +is_a: UBERON:0005194 ! thoracic vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002048 ! lung +relationship: tributary_of UBERON:8600051 ! segmental pulmonary vein +relationship: vessel_drains_blood_from UBERON:8600017 ! bronchopulmonary segment +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600053 +name: esophageal vein +def: "A vein that is tributary of the azygos vein and drains blood from the esophagus." [wikipedia:Esophageal_veins] +xref: FMA:4748 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003502 ! neck blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0000974 ! neck +relationship: tributary_of UBERON:0001594 ! azygos vein +relationship: vessel_drains_blood_from UBERON:0001043 ! esophagus +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600054 +name: supreme intercostal vein +def: "A vein that is tributary of the superior intercostal vein and drains the first intercostal space." [wikipedia:Supreme_intercostal_vein] +synonym: "first posterior intercostal vein" EXACT [FMA:4744] +xref: FMA:4744 +is_a: UBERON:0005194 ! thoracic vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0016403 ! thoracic wall +relationship: tributary_of UBERON:0003711 ! brachiocephalic vein +relationship: vessel_drains_blood_from UBERON:0003252 ! thoracic rib cage +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600055 +name: atrioventricular nodal artery +def: "An artery that branches from the right coronary artery and supplies the atrioventricular node." [wikipedia:Atrioventricular_nodal_branch] +synonym: "atrioventricular node branch of right coronary artery" EXACT [FMA:3851] +xref: FMA:3851 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003498 ! heart blood vessel +relationship: connecting_branch_of UBERON:0001625 ! right coronary artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000948 ! heart +relationship: vessel_supplies_blood_to UBERON:0002352 ! atrioventricular node +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600056 +name: lateral sacral vein +def: "A vein that is tributary of the internal iliac vein and drains the anterior surface of the sacrum." [wikipedia:Lateral_sacral_veins] +xref: FMA:18905 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003520 ! pelvis blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: tributary_of UBERON:0001317 ! internal iliac vein +relationship: vessel_drains_blood_from UBERON:0003690 ! fused sacrum +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600057 +name: middle hemorrhoidal vein +def: "A vein that is tributary of the internal iliac vein." [wikipedia:Middle_rectal_veins] +synonym: "middle rectal vein" EXACT [FMA:18893] +xref: FMA:18893 +is_a: UBERON:0001638 ! vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001052 ! rectum +relationship: tributary_of UBERON:0001317 ! internal iliac vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600058 +name: uterine vein +def: "A vein that is tributary of the internal iliac vein and drains the uterus." [wikipedia:Uterine_veins] +xref: FMA:18896 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0005156 ! reproductive structure +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000995 ! uterus +relationship: tributary_of UBERON:0001317 ! internal iliac vein +relationship: vessel_drains_blood_from UBERON:0000995 ! uterus +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600059 +name: deep cervical vein +def: "A vein that is tributary of a vertebral vein and drains the suboccipital region, adjacent vertebral column, and deep muscles of the neck." [wikipedia:Deep_cervical_vein] +xref: FMA:4746 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003502 ! neck blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0000974 ! neck +relationship: tributary_of UBERON:0001588 ! vertebral vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600060 +name: subsegmental pulmonary artery +def: "An artery that is a branch of the segmental pulmonary artery and supplies deoxyge blood to a smaller subsegment of the lung." [PMID:30057869] +xref: FMA:9311 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003512 ! lung blood vessel +relationship: connecting_branch_of UBERON:0039262 ! segmental pulmonary artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002048 ! lung +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600061 +name: intra-acinar venule +def: "A venule that receives drainage from the capillary beds after blood has perfused the pulmonary alveoli, and is tributary of the pulmonary venules." [PMID:20110543] +is_a: UBERON:8600024 ! pulmonary venule +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0008874 ! pulmonary acinus +relationship: tributary_of UBERON:8600024 ! pulmonary venule +relationship: vessel_drains_blood_from UBERON:0002299 ! alveolus of lung +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600062 +name: thyrocervical trunk +def: "An artery that branches from the subclavian artery and supplies the thyroid gland, neck, and upper back regions." [wikipedia:Thyrocervical_trunk] +xref: FMA:3990 +is_a: UBERON:0012320 ! cervical artery +relationship: connecting_branch_of UBERON:0001533 ! subclavian artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0000974 ! neck +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600063 +name: septal perforating artery +def: "An artery that branches from the left anterior descending artery and supplies the interventricular septum of the heart." [DOI:10.1067/mtc.2001.113604] +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003834 ! thoracic segment blood vessel +relationship: connecting_branch_of UBERON:8600102 ! left anterior descending artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: vessel_supplies_blood_to UBERON:0002094 ! interventricular septum +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600064 +name: posterolateral artery +def: "An artery that branches from the right coronary artery or the circumflex artery and supplies the posterior and lateral walls of the left ventricle." [doi:10.53347/rID-35642] +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003834 ! thoracic segment blood vessel +relationship: connecting_branch_of UBERON:8600103 ! anterior internal vertebral venous plexus +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: vessel_supplies_blood_to UBERON:0002084 ! heart left ventricle +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600065 +name: lateral femoral circumflex vein +def: "A vein that is tributary of the femoral vein and drains blood from the front and middle areas of the thigh." [https://www.kenhub.com/en/library/anatomy/femoral-vein] +synonym: "set of lateral circumflex femoral veins" EXACT [FMA:70921] +xref: FMA:70921 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003516 ! hindlimb blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0002103 ! hindlimb +relationship: tributary_of UBERON:0001361 ! femoral vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600066 +name: basivertebral vein +def: "A vein that is tributary of the anterior internal vertebral venous plexus and drains blood from the vertebral bodies." [doi:10.53347/rID-36991] +xref: FMA:321542 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004258 ! back blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002240 ! spinal cord +relationship: tributary_of UBERON:8600103 ! anterior internal vertebral venous plexus +relationship: vessel_drains_blood_from UBERON:0001075 ! bony vertebral centrum +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600067 +name: bronchial venule +def: "A venule that is tributary of the bronchial veins and drains blood from the bronchi and bronchioles of the lungs." [wikipedia:Bronchial_veins] +is_a: UBERON:8600024 ! pulmonary venule +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0002048 ! lung +relationship: tributary_of UBERON:0001592 ! bronchial vein +relationship: vessel_drains_blood_from UBERON:0000117 ! respiratory tube +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600068 +name: mental vein +def: "A vein that is tributary of the facial vein and drains blood from the chin and lower lip." [doi:10.17354/ijss/2016/337] +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: tributary_of UBERON:0001653 ! facial vein +relationship: vessel_drains_blood_from UBERON:0001710 ! lower jaw region +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600069 +name: deep lingual vein +def: "A vein that is tributary of the lingual vein and drains blood from the tongue." [wikipedia:Deep_lingual_vein] +xref: FMA:50830 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: tributary_of UBERON:0006634 ! lingual vein +relationship: vessel_drains_blood_from UBERON:0001723 ! tongue +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600070 +name: dorsal lingual vein +def: "A vein that is tributary of the lingual vein and drains blood from the dorsum of the tongue, and the sides of the tongue." [wikipedia:Dorsal_lingual_veins] +xref: FMA:50826 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: tributary_of UBERON:0006634 ! lingual vein +relationship: vessel_drains_blood_from UBERON:0001723 ! tongue +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600071 +name: sublingual vein +def: "A vein that is tributary of the lingual vein and drains blood from the ventral (inferior) surface of the tongue and the sublingual glands." [wikipedia:Sublingual_vein] +xref: FMA:50836 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: tributary_of UBERON:0006634 ! lingual vein +relationship: vessel_drains_blood_from UBERON:0001832 ! sublingual gland +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600072 +name: glandular venous plexus +def: "A venous plexus tha connects the middle and superior thyroid veins." [https://www.anatomy.net/superior-thyroid-vein] +synonym: "thiroid venous plexus" EXACT [doi:10.53347/rID-70578] +is_a: UBERON:0001593 ! venous plexus +is_a: UBERON:0006876 ! vasculature of organ +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002046 ! thyroid gland +relationship: tributary_of UBERON:0007157 ! superior thyroid vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600073 +name: circumflex humeral vein +def: "A vein that is tributary of the axillary vein and drains blood from the region around the neck of the humerus." [wikipedia:Axillary_vein] +is_a: UBERON:0001638 ! vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001467 ! shoulder +relationship: tributary_of UBERON:0000985 ! axillary vein +relationship: vessel_drains_blood_from UBERON:0000976 ! humerus +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600074 +name: thoracoacromial vein +def: "A vein that is tributary of the axillary vein and drains blood from the thoracoacromial region, including the pectoral, shoulder, and clavicular regions." [wikipedia:Axillary_vein] +synonym: "thoraco-acromial vein" EXACT [FMA:23058] +xref: FMA:23058 +is_a: UBERON:0001638 ! vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001467 ! shoulder +relationship: tributary_of UBERON:0000985 ! axillary vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600075 +name: transverse cervical vein +def: "A vein that is tributary of the external jugular vein and drains blood from the superficial muscles of the back, mainly the trapezius muscle." [wikipedia:Transverse_cervical_veins] +xref: FMA:50858 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003502 ! neck blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0000974 ! neck +relationship: tributary_of UBERON:0001101 ! external jugular vein +relationship: vessel_drains_blood_from UBERON:0002380 ! trapezius muscle +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600076 +name: suboccipital venous plexus +def: "A venous plexus that is tributary of the deep cervical veins and drains blood from the suboccipital region." [doi:10.1227/01.neu.0000303217.53607.d9] +xref: FMA:50803 +is_a: UBERON:0001593 ! venous plexus +is_a: UBERON:0006876 ! vasculature of organ +is_a: UBERON:0036303 ! vasculature of central nervous system +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002240 ! spinal cord +relationship: tributary_of UBERON:8600059 ! deep cervical vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600077 +name: pulmonary arteriole +def: "An arteriole that branches from the pulmonary arteries and supplies deoxygenated blood to the pulmonary capillaries and alveolar capillaries of the lungs." [https://radiologykey.com/6-pulmonary-artery-and-vein/] +synonym: "set of all pulmonary arterioles" EXACT [FMA:279896] +xref: FMA:279896 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003512 ! lung blood vessel +is_a: UBERON:0010369 ! secondary pulmonary lobule +relationship: connecting_branch_of UBERON:8600060 ! subsegmental pulmonary artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0010369 ! secondary pulmonary lobule +relationship: vessel_supplies_blood_to UBERON:0016405 ! pulmonary capillary +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600078 +name: ascending pharyngeal artery +def: "An artery of the neck that branches from the external carotid artery and supplies the pharynx." [wikipedia:Ascending_pharyngeal_artery] +xref: FMA:49497 +is_a: UBERON:0012320 ! cervical artery +is_a: UBERON:0035398 ! branch of external carotid artery +relationship: connecting_branch_of UBERON:0001070 ! external carotid artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0000974 ! neck +relationship: vessel_supplies_blood_to UBERON:0006562 ! pharynx +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600079 +name: dural artery +def: "An artery that branches from the internal carotid artery and supplies the anterior clinoid process of the dura mater." [doi:10.1016/j.wneu.2018.12.071] +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001532 ! internal carotid artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000033 ! head +relationship: vessel_supplies_blood_to UBERON:0002407 ! pericardium +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600080 +name: pericardial artery +def: "An artery that branches from the descending thoracic aorta and supplies the dorsal portion of the pericardium." [wikipedia:Descending_thoracic_aorta] +xref: FMA:69329 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003834 ! thoracic segment blood vessel +relationship: connecting_branch_of UBERON:0002345 ! descending thoracic aorta +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +relationship: vessel_supplies_blood_to UBERON:0001103 ! diaphragm +relationship: vessel_supplies_blood_to UBERON:0002407 ! pericardium +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600081 +name: percardiacophrenic artery +def: "An artery that branches from the internal thoracic artery and supplies the pericardium and the diaphragm." [wikipedia:Pericardiacophrenic_artery] +synonym: "pericardiacophrenic artery" EXACT [FMA:3964] +xref: FMA:3964 +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003834 ! thoracic segment blood vessel +relationship: connecting_branch_of UBERON:0002456 ! internal thoracic artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0001103 ! diaphragm +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600082 +name: superficial iliac circumflex vein +def: "A vein that is tributary of the great saphenous vein and drains blood from the inguinal region and the anterior abdominal wall." [wikipedia:Great_saphenous_vein] +synonym: "superficial circumflex iliac vein" EXACT [FMA:44319] +xref: FMA:44319 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003516 ! hindlimb blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0002103 ! hindlimb +relationship: tributary_of UBERON:0001363 ! great saphenous vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600083 +name: fibular vein +def: "A vein that is tributary of the posterior tibial vein and drains blood from the lateral compartment of the leg." [wikipedia:Fibular_veins] +synonym: "set of peroneal veins" EXACT [FMA:71587] +xref: FMA:71587 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003516 ! hindlimb blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0002103 ! hindlimb +relationship: tributary_of UBERON:0001546 ! posterior tibial vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600084 +name: prostatic venule +def: "A venule that is tributary of the prostatic venous plexus and drains blood from the prostate gland." [https://www.kenhub.com/en/library/anatomy/prostatic-venous-plexus] +is_a: UBERON:0001638 ! vein +is_a: UBERON:0001979 ! venule +is_a: UBERON:0003520 ! pelvis blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: tributary_of UBERON:0009042 ! prostatic venous plexus +relationship: vessel_drains_blood_from UBERON:0002367 ! prostate gland +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600085 +name: hepatic portal venule +def: "A venule that branches from the hepatic portal vein to transport nutrient-rich blood from the gastrointestinal tract and spleen to supply the liver. The hepatic portal venule is tributary of the hepatic sinusoids." [wikipedia:Liver_sinusoid] +is_a: UBERON:0001637 ! artery +is_a: UBERON:0001979 ! venule +is_a: UBERON:0015796 ! liver blood vessel +relationship: connecting_branch_of UBERON:0001639 ! hepatic portal vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0004647 ! liver lobule +relationship: tributary_of UBERON:0001281 ! hepatic sinusoid +relationship: vessel_supplies_blood_to UBERON:0004647 ! liver lobule +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600086 +name: incisor artery +def: "An artery that branches from the inferior alveolar artery and supplies the roots and pulp of the teeth of the lower jaw. It forms anastomoses with its contralateral partner." [wikipedia:Inferior_alveolar_artery] +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0014693 ! inferior alveolar artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: vessel_supplies_blood_to UBERON:0009679 ! set of lower jaw teeth +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600087 +name: external nasal vein +def: "A vein that is tributary of the angular vein and drains blood from the superficial tissues and skin of the dorsum (bridge) and ala (wings) of the nose." [https://www.anatomy.net/angular-vein] +xref: FMA:50910 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: tributary_of UBERON:0014686 ! angular vein +relationship: vessel_drains_blood_from UBERON:0000004 ! nose +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600088 +name: supratrochlear vein +def: "A vein that is tributary of the angular vein and drains blood from the muscles and skin of the forehead." [wikipedia:Angular_vein] +xref: FMA:50898 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: tributary_of UBERON:0014686 ! angular vein +relationship: vessel_drains_blood_from UBERON:0008200 ! forehead +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600089 +name: transverse nasal root vein +def: "A vein that is tributary of the angular veins and drains blood from the bridge of the nose." [https://plasticsurgerykey.com/veins-of-the-face-and-neck/] +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000004 ! nose +relationship: tributary_of UBERON:0014686 ! angular vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600090 +name: hypophyseal vein +def: "A vein that is tributary of the cavernous sinus and drains blood from the pituitary gland." [https://www.kenhub.com/en/library/anatomy/the-cavernous-sinus] +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003499 ! brain blood vessel +is_a: UBERON:0005156 ! reproductive structure +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000007 ! pituitary gland +relationship: tributary_of UBERON:0003712 ! cavernous sinus +relationship: vessel_drains_blood_from UBERON:0000007 ! pituitary gland +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600091 +name: inferior anastomotic vein +def: "A vein that is tributary of the transverse sinus and drains blood from the adjacent cortical regions of the temporal lobe. The inferior anastomotic vein forms an anastomosis (connection) between the superficial middle cerebral vein anteriorly and the transverse sinus posteriorly." [wikipedia:Inferior_anastomotic_vein] +xref: FMA:51239 +is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0009141 ! craniocervical region vein +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000033 ! head +relationship: tributary_of UBERON:0001641 ! transverse sinus +relationship: vessel_drains_blood_from UBERON:0001871 ! temporal lobe +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600092 +name: radial vein +def: "A vein that is tributary of the brachial vein and drains blood from the lateral structures of the forearm, carpal and metacarpal bones, joints of the hand, and lateral forearm muscles." [wikipedia:Radial_veins] +xref: FMA:22947 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003507 ! arm blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0001460 ! arm +relationship: tributary_of UBERON:0001413 ! brachial vein +relationship: vessel_drains_blood_from UBERON:0002386 ! forelimb zeugopod +relationship: vessel_drains_blood_from UBERON:0002398 ! manus +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600093 +name: ulnar vein +def: "A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm." [wikipedia:Ulnar_veins] +xref: FMA:22950 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003507 ! arm blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0001460 ! arm +relationship: tributary_of UBERON:0001413 ! brachial vein +relationship: vessel_drains_blood_from UBERON:0002386 ! forelimb zeugopod +relationship: vessel_drains_blood_from UBERON:0002398 ! manus +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600094 +name: intra-acinar arteriole +def: "An arteriole that branches from the pulmonary arteriole and supplies deoxygenated blood to the pulmonary capillaries in the alveoli of the lungs." [PMID:20110543] +is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0003495 ! respiratory system arteriole +is_a: UBERON:0003512 ! lung blood vessel +relationship: connecting_branch_of UBERON:8600077 ! pulmonary arteriole +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0008874 ! pulmonary acinus +relationship: vessel_supplies_blood_to UBERON:0002299 ! alveolus of lung +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600095 +name: ascending palatine artery +def: "An artery that branches from the facial artery, and branches to supply the soft palate and the palatine tonsil." [wikipedia:Ascending_palatine_artery] +xref: FMA:49555 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001612 ! facial artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: vessel_supplies_blood_to UBERON:0001733 ! soft palate +relationship: vessel_supplies_blood_to UBERON:0002373 ! palatine tonsil +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600096 +name: submental artery +def: "An artery that branches from the facial artery that runs forward under the mouth, then turns upward upon reaching the chin." [wikipedia:Submental_artery] +xref: FMA:49561 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001612 ! facial artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600097 +name: deep lingual artery +def: "An artery that branches from the lingual artery and supplies blood to the tongue itself, particularly the body and tip of the tongue. The deep lingual artery travels superiorly in a tortuous course along the under (ventral) surface of the tongue, below the longitudinalis inferior, and above the mucous membrane." [wikipedia:Lingual_artery] +synonym: "third part of lingual artery" EXACT [FMA:49532] +xref: FMA:49532 +is_a: UBERON:0001610 ! lingual artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001610 ! lingual artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0001456 ! face +relationship: vessel_supplies_blood_to UBERON:0001723 ! tongue +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600098 +name: dorsal lingual artery +def: "An artery that branches from the lingual artery and supplies the soft palate, tonsils, epiglottis, palatoglossal arch, and adjacent mucous membrane. The dorsal lingual artery runs along the upper border of the hyoid bone and anastomises with its fellow of the opposite side." [https://www.ncbi.nlm.nih.gov/books/NBK554513/] +xref: FMA:49546 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001610 ! lingual artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: vessel_supplies_blood_to UBERON:0000388 ! epiglottis +relationship: vessel_supplies_blood_to UBERON:0001733 ! soft palate +relationship: vessel_supplies_blood_to UBERON:0002373 ! palatine tonsil +relationship: vessel_supplies_blood_to UBERON:0011640 ! palatoglossal arch +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600099 +name: accessory meningeal artery +def: "An artery that branches from the maxillary artery and supplies the meninges. The accessory meningeal artery ascends through the foramen ovale to enter the cranial cavity and supply the dura mater of the floor of the middle cranial fossa and of the trigeminal cave, and to the trigeminal ganglion." [wikipedia:Accessory_meningeal_artery] +xref: FMA:79467 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001616 ! maxillary artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0000033 ! head +relationship: vessel_supplies_blood_to UBERON:0010743 ! meningeal cluster +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600100 +name: artery of pterygoid canal +def: "An artery that branches from the maxillary artery and supplies blood to structures in the auditory tube, tympanic cavity, and upper pharynx. The artery of the pterygoid canal courses through the pterygoid canal, a small bony canal located in the sphenoid bone of the skull." [wikipedia:Artery_of_the_pterygoid_canal] +xref: FMA:85528 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001616 ! maxillary artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: vessel_supplies_blood_to UBERON:0001756 ! middle ear +relationship: vessel_supplies_blood_to UBERON:0002393 ! pharyngotympanic tube +relationship: vessel_supplies_blood_to UBERON:0006562 ! pharynx +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600101 +name: descending palatine artery +def: "An artery that branches from the maxillary artery and supplies the hard and soft palate." [wikipedia:Descending_palatine_artery] +xref: FMA:49791 +is_a: UBERON:0001637 ! artery +is_a: UBERON:0003496 ! head blood vessel +relationship: connecting_branch_of UBERON:0001616 ! maxillary artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0001456 ! face +relationship: vessel_supplies_blood_to UBERON:0001733 ! soft palate +relationship: vessel_supplies_blood_to UBERON:0003216 ! hard palate +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600102 +name: left anterior descending artery +def: "An artery that branches from the left coronary artery and supplies the anterior wall of the left ventricle, the interventricular septum, and the apex of the heart." [wikipedia:Left_anterior_descending_artery] +synonym: "anterior interventricular branch of left coronary artery" EXACT [FMA:3862] +xref: FMA:3862 +is_a: UBERON:0003834 ! thoracic segment blood vessel +is_a: UBERON:0035395 ! branch of left coronary artery +relationship: connecting_branch_of UBERON:0001626 ! left coronary artery +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0000915 ! thoracic segment of trunk +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600103 +name: anterior internal vertebral venous plexus +def: "A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal." [wikipedia:Internal_vertebral_venous_plexuses] +xref: FMA:4869 +is_a: UBERON:0001593 ! venous plexus +is_a: UBERON:0006876 ! vasculature of organ +is_a: UBERON:0036303 ! vasculature of central nervous system +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002240 ! spinal cord +relationship: tributary_of UBERON:8600104 ! intervertebral vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600104 +name: intervertebral vein +def: "A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins" [https://www.kenhub.com/en/library/anatomy/veins-of-the-vertebral-column] +xref: FMA:76736 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0004258 ! back blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002240 ! spinal cord +relationship: tributary_of UBERON:0012199 ! posterior intercostal vein +relationship: tributary_of UBERON:8600056 ! lateral sacral vein +relationship: tributary_of UBERON:8600105 ! lumbar vein +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + +[Term] +id: UBERON:8600105 +name: lumbar vein +def: "A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region." [https://www.kenhub.com/en/library/anatomy/lumbar-veins] +synonym: "set of lumbar veins" EXACT [FMA:70889] +xref: FMA:70889 +is_a: UBERON:0001638 ! vein +is_a: UBERON:0003520 ! pelvis blood vessel +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of RO:0002577 ! system +relationship: part_of UBERON:0002355 ! pelvic region of trunk +relationship: tributary_of UBERON:0001072 ! inferior vena cava +relationship: vessel_drains_blood_from UBERON:0003697 ! abdominal wall +relationship: vessel_drains_blood_from UBERON:0005462 ! lower back +property_value: dcterms-date "2024-06-06T09:53:48Z" xsd:string + [Typedef] id: 2D_boundary_of name: 2D boundary of @@ -400135,6 +405029,12 @@ property_value: example_of_usage "the surface of my skin is a 2D boundary of my is_a: mereotopologically_related_to ! mereotopologically related to inverse_of: has_2D_boundary ! has 2D boundary +[Typedef] +id: BSPO:0001102 +name: parallel to +namespace: spatial +def: "x is parallel t y iff x and y are lines or planes which when extended indefinitely do not cross." [BSPO:curators] + [Typedef] id: CL:4030044 name: has_not_completed @@ -400260,6 +405160,15 @@ property_value: is_count_of UBERON:0010758 property_value: preceding_element_is BSPO:0000100 is_metadata_tag: true +[Typedef] +id: approximately_perpendicular_to +name: approximately perpendicular to +namespace: spatial +def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." [BSPO:cjm] +xref: BSPO:0000104 +domain: BSPO:0000010 ! anatomical axis +range: BSPO:0000010 ! anatomical axis + [Typedef] id: attaches_to name: attached to @@ -401204,6 +406113,15 @@ name: filtered through def: "Relationship between a fluid and a material entity, where the fluid is the output of a realization of a filtration role that inheres in the material entity." [] comment: Relationship between a fluid and a filtration barrier, where the portion of fluid arises as a transformation of another portion of fluid on the other side of the barrier, with larger particles removed +[Typedef] +id: finishes_axis +name: finishes axis +namespace: spatial +comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes axis x, and x has end point p, then x overlaps p +xref: BSPO:0015001 +domain: BSPO:0000054 ! anatomical side +range: BSPO:0000010 ! anatomical axis + [Typedef] id: fma_set_term name: fma_set_term @@ -402037,6 +406955,15 @@ id: layer_part_of name: layer part of is_a: part_of ! part of +[Typedef] +id: left_of +name: left of +namespace: spatial +def: "Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left of Y <=> every instance x of X is left of some instance y of Y, and there exists some organism o such that x part of o and y part of o." [BSPO:cjm] +xref: BSPO:0000110 +is_transitive: true +inverse_of: right_of ! right of + [Typedef] id: located_in name: located in @@ -402196,6 +407123,15 @@ property_value: example_of_usage "lactation SubClassOf 'only in taxon' some 'Mam property_value: seeAlso https://github.com/obophenotype/uberon/wiki/Taxon-constraints is_a: in_taxon ! in taxon +[Typedef] +id: orthogonal_to +name: orthogonal to +namespace: spatial +def: "crossing at right angles" [BSPO:cjm] +xref: BSPO:0015005 +domain: BSPO:0000010 ! anatomical axis +range: BSPO:0000400 ! anatomical plane + [Typedef] id: output_of name: output of @@ -402285,6 +407221,14 @@ domain: BFO:0000002 ! continuant range: BFO:0000003 ! occurrent inverse_of: has_participant ! has participant +[Typedef] +id: passes_through +name: passes through +namespace: spatial +def: "Intersects at two points." [BSPO:cjm] +xref: BSPO:0015006 +domain: BSPO:0000010 ! anatomical axis + [Typedef] id: phalanx_number name: phalanx number @@ -402788,6 +407732,14 @@ property_value: preceding_element_is BSPO:0000096 property_value: taxon_notes "In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals." xsd:string is_metadata_tag: true +[Typedef] +id: right_of +name: right of +namespace: spatial +def: "Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left of Y <=> every instance x of X is right of some instance y of Y, and there exists some organism o such that x part of o and y part of o." [BSPO:cjm] +xref: BSPO:0000111 +is_transitive: true + [Typedef] id: role_of name: role of @@ -402907,6 +407859,15 @@ is_a: part_of ! part of is_a: temporally_related_to ! temporally related to inverse_of: starts_with ! starts with +[Typedef] +id: starts_axis +name: starts axis +namespace: spatial +comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts axis x, and x has start point p, then x overlaps p +xref: BSPO:0015007 +domain: BSPO:0000054 ! anatomical side +range: BSPO:0000010 ! anatomical axis + [Typedef] id: starts_with name: starts with