From 61804e2ac6fccc8af14a9002655ba62fa6dbc9c7 Mon Sep 17 00:00:00 2001
From: Mohammed Mahdi <mohammed.mahdi@oist.jp>
Date: Fri, 19 Apr 2024 16:59:09 +0900
Subject: [PATCH] Inclusion of targetName parameter

to overide the default target parameter, which is null and now target
---
 main.nf         | 2 +-
 nextflow.config | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/main.nf b/main.nf
index 9cfe453..7802584 100644
--- a/main.nf
+++ b/main.nf
@@ -89,7 +89,7 @@ workflow {
     channel
         .value( params.target )
         .map { filename -> file(filename, checkIfExists: true) }
-        .map { file_obj -> [ [id:'target'], file_obj] }
+        .map { file_obj -> [ [id:params.targetName], file_obj] }
         .set { ch_target }
 
     //
diff --git a/nextflow.config b/nextflow.config
index 023b756..158e35a 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -58,7 +58,7 @@ params {
 
     // Others added
     seed                       = null
-    targetName                 = null
+    targetName                 = 'target'
    
     // Schema validation default options
     validationFailUnrecognisedParams = false