diff --git a/workflows/pairalign.nf b/workflows/pairalign.nf index 6d8c3b8..46ae3ea 100644 --- a/workflows/pairalign.nf +++ b/workflows/pairalign.nf @@ -6,6 +6,7 @@ include { ASSEMBLYSCAN } from '../modules/nf-core/assemblyscan/main' include { LAST_LASTDB } from '../modules/nf-core/last/lastdb/main' +include { LAST_TRAIN } from '../modules/nf-core/last/train/main' include { MULTIQC } from '../modules/nf-core/multiqc/main' include { paramsSummaryMap } from 'plugin/nf-validation' include { paramsSummaryMultiqc } from '../subworkflows/nf-core/utils_nfcore_pipeline' @@ -44,8 +45,14 @@ workflow PAIRALIGN { ) ch_multiqc_files = ch_multiqc_files.mix(ASSEMBLYSCAN.out.json.collect{it[1]}) ch_versions = ch_versions.mix(ASSEMBLYSCAN.out.versions.first()) - + + // MODULE: last-train // + LAST_TRAIN ( + ch_samplesheet, + LAST_LASTDB.out.index + ) + // Collate and save software versions // softwareVersionsToYAML(ch_versions)