Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Nikon TIFF channel metadata #4227

Open
melissalinkert opened this issue Sep 4, 2024 · 0 comments
Open

Nikon TIFF channel metadata #4227

melissalinkert opened this issue Sep 4, 2024 · 0 comments

Comments

@melissalinkert
Copy link
Member

@DavidStirling raised that Nikon TIFF channels are not handled as nicely as they could be, particularly when importing into OMERO.

For curated/nikon/carol in particular (and likely others), the fact that the channels are treated as 3 RGB channels and modelled as a single OME-XML Channel with 3 SamplesPerPixel means that the same emission/excitation wavelengths are applied to all 3 channels. On import to OMERO, this means that all 3 channels have the same color by default.

Original metadata indicates that there are different emission wavelengths recorded for each channel, so the better behavior would be to split the channels in the reader so that 3 OME-XML Channels each with 1 SamplesPerPixel are recorded.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant