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Consolidate quality control stats #187

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imedina opened this issue Jun 23, 2020 · 0 comments
Open

Consolidate quality control stats #187

imedina opened this issue Jun 23, 2020 · 0 comments
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@jtarraga @imedina
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@imedina
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imedina commented Jun 23, 2020

We need to move some stats from OpenCGA to biodata to make them more reusable
@imedina imedina added the task label Jun 23, 2020
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
models: add QualityControlFile data model, #187
1a0a46b
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
models: move the Comment data model to one upper level, #187
32df4d1
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
models: add some data models from opencga, #187
e128f8f
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
formats: add FastQC support from opencga, #187
e9252c5
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
formats: add FastQC parser, #187
183872e
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
formats: improve FastQC format support by including the related imageg,
447d17d 
#187
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
formats: add SamtoolsFlagstats, #187
ab82b52
jtarraga added a commit that referenced this issue Jun 24, 2020
@jtarraga
formats: rename AlignmentStats to SamtoolsStats and move it to formats,
387ca11 
#187
jtarraga added a commit that referenced this issue Jun 25, 2020
@jtarraga
formats: add HsMetrics, #187
705ca5c
jtarraga added a commit that referenced this issue Jun 26, 2020
@jtarraga
formats: improve samtools/flagstat support, #187
534975d
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@jtarraga @imedina