Download Data Sources

This tutorial will guide you to download a set of raw files from several data sources. These raw files shall contain the core data that will populate the Cellbase knowledgebase. Download can be done through the Cellbase CLI:

prompt$ /tmp/cellbase/cellbase-app/build/bin/cellbase.sh download --help

Three main datasets will be downloaded in for the human genome: genome sequence, gene annotation, variant annotation. By using the download command, an example of a full command line could be:

`prompt$ /tmp/cellbase/cellbase-app/build/bin/cellbase.sh download -o /tmp/downloadTest --sequence --variation --gene --species "Homo sapiens"