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Neater notebook representation of Model Objects #1277

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achillesrasquinha opened this issue Sep 19, 2022 · 1 comment · May be fixed by #1278
Open
1 task done

Neater notebook representation of Model Objects #1277

achillesrasquinha opened this issue Sep 19, 2022 · 1 comment · May be fixed by #1278

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@achillesrasquinha
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achillesrasquinha commented Sep 19, 2022 •
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Is your feature related to a problem? Please describe it.

Describe the solution you would like.

It would be nice to have a neater representation of the model objects - metabolites, reactions, genes, etc. For example,
Screen Shot 2022-09-18 at 11 15 21 PM

This introduces a _repr_html_ within the DictList object. Each Object then declares a _DF_ATTRS internally that contains the needed column list for the data frame representation to be created. Adding a to_dataframe() function to DictList would solve this.

>>> model.reactions.to_dataframe()

I've currently already had this implemented at https://github.com/achillesrasquinha/cobrapy/tree/feats

Describe alternatives you considered

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@achillesrasquinha achillesrasquinha linked a pull request Sep 19, 2022 that will close this issue
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@Midnighter
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Midnighter commented Sep 19, 2022 •
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Please make a new pull request for this. And don't add it to #1278. I like the idea, though. 👍🏼

Oh, I got confused because you kept the same title as for #1276

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feat: add repr to dictlist achillesrasquinha/cobrapy
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@Midnighter @achillesrasquinha