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.gitmodules
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[submodule "binary"]
path = binary
url = https://github.com/opencobra/COBRA.binary.git
ignore = dirty
branch = master
[submodule "GeoCalcLib"]
path = external/analysis/GeoCalcLib
url = https://github.com/rmtfleming/GeoCalcLib.git
ignore = dirty
branch = master
[submodule "lusol"]
path = external/base/solvers/lusol
url = https://github.com/nwh/lusol.git
ignore = dirty
branch = master
[submodule "pdco"]
path = external/base/solvers/pdco
url = https://github.com/mxsaunders/pdco.git
ignore = dirty
branch = master
[submodule "Smith-Decomposition"]
path = external/base/utilities/Smith-Decomposition
url = https://github.com/nbfigueroa/Smith-Decomposition.git
ignore = dirty
branch = master
[submodule "gaimc"]
path = external/analysis/gaimc
url = https://github.com/dgleich/gaimc.git
ignore = dirty
branch = master
[submodule "models"]
path = test/models
url = https://github.com/opencobra/COBRA.models
ignore = dirty
branch = master
[submodule "Volume-and-Sampling"]
path = external/analysis/Volume-and-Sampling
url = https://github.com/Bounciness/Volume-and-Sampling.git
ignore = dirty
branch = master
[submodule "CnaCobraInterface"]
path = external/analysis/CnaCobraInterface
url = https://github.com/SteffKlamt/CnaCobraInterface.git
ignore = dirty
branch = master
[submodule "tutorials"]
path = tutorials
url = https://github.com/opencobra/COBRA.tutorials.git
ignore = dirty
branch = master
[submodule "papers"]
path = papers
url = https://github.com/opencobra/COBRA.papers.git
ignore = dirty
branch = master
[submodule "octave-networks-toolbox"]
path = external/analysis/octave-networks-toolbox
url = https://github.com/aeolianine/octave-networks-toolbox.git
ignore = dirty
branch = master
[submodule "looplessFluxSampler"]
path = external/base/samplers/looplessFluxSampler
url = https://github.com/rmtfleming/looplessFluxSampler
ignore = dirty
branch = master
[submodule "external/base/utilities/condalab"]
path = external/base/utilities/condalab
url = https://github.com/sg-s/condalab
ignore = dirty
branch = master
[submodule "external/analysis/PolytopeSamplerMatlab"]
path = external/analysis/PolytopeSamplerMatlab
url = https://github.com/ConstrainedSampler/PolytopeSamplerMatlab
ignore = dirty
branch = master
[submodule "external/base/io/xlread"]
path = external/base/io/xlread
url = https://github.com/tpfau/xlread
ignore = dirty
branch = master
[submodule "external/visualization/MatGPT"]
path = external/visualization/MatGPT
url = https://github.com/toshiakit/MatGPT.git
ignore = dirty
branch = main