Dockerfile

# See here for image contents: https://github.com/microsoft/vscode-dev-containers/tree/v0.245.2/containers/python-3-anaconda/.devcontainer/base.Dockerfile

FROM mcr.microsoft.com/vscode/devcontainers/anaconda:0-3

# [Choice] Node.js version: none, lts/*, 16, 14, 12, 10
ARG NODE_VERSION="none"
RUN if [ "${NODE_VERSION}" != "none" ]; then su vscode -c "umask 0002 && . /usr/local/share/nvm/nvm.sh && nvm install ${NODE_VERSION} 2>&1"; fi

# Copy environment.yml (if found) to a temp location so we update the environment. Also
# copy "noop.txt" so the COPY instruction does not fail if no environment.yml exists.
COPY environment.yml* .devcontainer/noop.txt /tmp/conda-tmp/
RUN if [ -f "/tmp/conda-tmp/environment.yml" ]; then umask 0002 && /opt/conda/bin/conda env update -n base -f /tmp/conda-tmp/environment.yml; fi \
    && rm -rf /tmp/conda-tmp

# Install Rustup
ENV RUSTUP_HOME /opt/rustup
ENV CARGO_HOME /opt/cargo
RUN curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- --default-toolchain nightly -y
ENV PATH="${PATH}:/opt/cargo/bin:/opt/cargo/env"
RUN echo "source /opt/cargo/env" >> ~/.bashrc && \
. /opt/cargo/env && \
cargo install sprocket


# [Optional] Uncomment this section to install additional OS packages.
# RUN apt-get update && export DEBIAN_FRONTEND=noninteractive \
#     && apt-get -y install --no-install-recommends <your-package-list-here>

RUN conda install -y -c conda-forge \
    cromwell \
    miniwdl \
    shellcheck