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@KatherLab Kather Lab at EKFZ / TU Dresden

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    36 repositories

    • MediSwarm

      Public
      MediSwarm is an open-source project for advancing medical deep learning using swarm intelligence and NVFlare. Developed by the Odelia consortium, it ensures data privacy through federated learning, enabling collaborative, decentralized model training across institutions for improved medical research and applications.
      Python
      •
      MIT License
      •0•6•8•1•Updated Nov 12, 2024Nov 12, 2024

    • marugoto

      Public
      Tools to build deep learning pipelines.
      Python
      •
      MIT License
      •28•84•1•0•Updated Nov 12, 2024Nov 12, 2024

    • LLMAIx

      Public
      Document Information Extraction & Anonymization using local LLMs
      Python
      •
      GNU Affero General Public License v3.0
      •5•14•0•0•Updated Nov 11, 2024Nov 11, 2024

    • mopadi

      Public
      MOrphing histoPAthology DIffusion models for explainability of AI pipelines in medical image analysis.
      Python
      •
      Other
      •0•2•0•0•Updated Oct 29, 2024Oct 29, 2024

    • genml

      Public
      This is a pipeline of feature extraction for genomics mutation using foundation models.
      Python
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • prompt_injection_attacks

      Public
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 16, 2024Oct 16, 2024

    • swarm-learning-hpe

      Public
      Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.
      distributed-systemsdeep-learningblockchain
      Python
      •
      MIT License
      •1•12•29•1•Updated Oct 7, 2024Oct 7, 2024

    • STAMP

      Public
      Solid Tumor Associative Modeling in Pathology
      Python
      •
      MIT License
      •23•47•7•4•Updated Sep 18, 2024Sep 18, 2024

    • LLMAnonymizer-Publication

      Public
      Anonymize Medical Documents using LLMs
      Python
      •
      Other
      •2•4•0•0•Updated Sep 2, 2024Sep 2, 2024

    • NVFlare_MediSwarm

      Public
      NVIDIA Federated Learning Application Runtime Environment
      Python
      •
      Apache License 2.0
      •181•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • highres-WSI-heatmaps

      Public
      Python
      •
      GNU General Public License v3.0
      •5•7•0•0•Updated Jul 9, 2024Jul 9, 2024

    • joint-mtl-cpath

      Public
      Python
      •
      MIT License
      •0•5•0•0•Updated Jul 8, 2024Jul 8, 2024

    • llm-agent

      Public
      LLM agents in medicine
      Python
      •
      Other
      •2•7•0•0•Updated Jun 24, 2024Jun 24, 2024

    • Medical_LLM

      Public
      Welcome to the Medical LLM repository, your premier gateway to a structured and meticulously designed pipeline exclusively crafted for large language models (LLMs) based medical projects.
      Python
      •
      MIT License
      •1•13•3•0•Updated Apr 10, 2024Apr 10, 2024

    • end2end-WSI-preprocessing

      Public
      End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
      Python
      •
      MIT License
      •6•23•2•0•Updated Mar 20, 2024Mar 20, 2024

    • crc-models-2022

      Public
      trained deep learning models for biomarker prediction from colorectal cancer pathology slides, 2022 edition
      MIT License
      •0•3•1•0•Updated Mar 8, 2024Mar 8, 2024

    • wanshi-utils

      Public
      Ultilities repo for visualizations and result assesments
      visualizationutilities
      Python
      •
      MIT License
      •1•4•5•0•Updated Dec 13, 2023Dec 13, 2023

    • heterogeneity-targeted

      Public
      Python
      •0•0•0•0•Updated Oct 24, 2023Oct 24, 2023

    • UKBioBank

      Public
      Repository to incorporate code for the Brain projects
      Python
      •
      MIT License
      •1•0•2•0•Updated Jul 18, 2023Jul 18, 2023

    • HIA

      Public
      Histopathology Image Analysis
      Python
      •17•90•8•1•Updated Jul 6, 2023Jul 6, 2023

    • preprocessing-radiology

      Public
      Repo for data preparation, extracting features from radimages. Adapt to marugoto attention MIL and the features are in h5
      Python
      •
      MIT License
      •0•2•0•0•Updated Jun 27, 2023Jun 27, 2023

    • visualizing_image_embeddings

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Apr 12, 2023Apr 12, 2023

    • preprocessing-ng

      Public
      Python
      •
      MIT License
      •4•7•2•1•Updated Apr 12, 2023Apr 12, 2023

    • preProcessing

      Public
      Python
      •
      MIT License
      •12•43•4•2•Updated Apr 12, 2023Apr 12, 2023

    • thumbnail-classification

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 6, 2023Jan 6, 2023

    • QuPath_scripts

      Public
      Groovy
      •0•0•0•0•Updated Sep 13, 2022Sep 13, 2022

    • Pathology_Adversarial

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•1•0•Updated Sep 6, 2022Sep 6, 2022

    • Hanta-Virus

      Public
      Python
      •0•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • dl-mri

      Public
      Deep Learning MRI image analysis
      Python
      •
      MIT License
      •8•36•1•0•Updated Aug 3, 2022Aug 3, 2022

    • cancer-metadata

      Public
      machine-readable information for the TCGA dataset, mirrored from other sources
      MIT License
      •4•14•2•1•Updated Jun 14, 2022Jun 14, 2022