Repositories list

• eva

  Public
  Evaluation framework for oncology foundation models (FMs)

  machine-learningevaluation-frameworkoncology+ 1foundation-models

  Python

  •

  Apache License 2.0

  •4•62•28•8•Updated Nov 7, 2024Nov 7, 2024

• typedspark

  Public
  Column-wise type annotations for pyspark DataFrames

  Python

  •

  Apache License 2.0

  •4•69•2•1•Updated Nov 7, 2024Nov 7, 2024

• gitleaks-action

  Public
  Protect your secrets using Gitleaks-Action

  JavaScript

  •

  Other

  •128•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• Cytomine-Web-UI

  Public
  The Cytomine-WebUI is the official front-end for Cytomine, developed in VueJS. You will find more information about the Cytomine project on our website.

  Vue

  •

  Apache License 2.0

  •23•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• Cytomine-core-spring

  Public
  Java

  •7•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• action-cached-lfs-checkout

  Public
  GitHub checkout action with LFS files pulled from cache

  Just

  •

  MIT License

  •54•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• towards_large_pathology_fms

  Public
  This repository contains the official implementation of the research paper: "Towards Training Large-Scale Pathology Foundation Models: from TCGA to Hospital Scale"

  Python

  •

  Other

  •0•22•1•0•Updated Jul 22, 2024Jul 22, 2024

• HistoQC

  Public
  HistoQC is an open-source quality control tool for digital pathology slides

  JavaScript

  •

  BSD 3-Clause Clear License

  •106•0•0•0•Updated Jun 28, 2024Jun 28, 2024

• cornerstone3D

  Public
  Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.

  TypeScript

  •

  MIT License

  •291•0•0•0•Updated Jun 11, 2024Jun 11, 2024

• pytorch-image-models

  Public
  PyTorch image models, scripts, pretrained weights -- ResNet, ResNeXT, EfficientNet, EfficientNetV2, NFNet, Vision Transformer, MixNet, MobileNet-V3/V2, RegNet, DPN, CSPNet, and more

  Python

  •

  Apache License 2.0

  •4.8k•0•0•0•Updated May 13, 2024May 13, 2024

• kaiko-tech-radar

  Public
  Visualizing our technology choices

  MIT License

  •626•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• hissl

  Public
  Histology Self-Supervised Learning

  Python

  •

  MIT License

  •4•0•0•0•Updated Apr 8, 2024Apr 8, 2024

• phpipam

  Public
  Local fork for the phpIPAM tool

  PHP

  •736•0•0•0•Updated Apr 8, 2024Apr 8, 2024

• OHIF-Viewer

  Public
  OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

  JavaScript

  •

  MIT License

  •3.4k•0•0•0•Updated Apr 8, 2024Apr 8, 2024

• ray

  Public
  An open source framework that provides a simple, universal API for building distributed applications. Ray is packaged with RLlib, a scalable reinforcement learning library, and Tune, a scalable hyperparameter tuning library.

  Python

  •

  Apache License 2.0

  •5.8k•0•0•0•Updated Apr 8, 2024Apr 8, 2024

• dlup

  Public
  Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

  Python

  •

  Apache License 2.0

  •7•0•0•0•Updated Apr 8, 2024Apr 8, 2024

• lightning

  Public
  Deep learning framework to train, deploy, and ship AI products Lightning fast.

  Python

  •

  Apache License 2.0

  •3.4k•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• adlfs

  Public
  fsspec-compatible Azure Datake and Azure Blob Storage access

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •104•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• deepfence-terraform-azure-cloud-scanner

  Public
  Deepfence Cloud Scanner runs in your cloud environment, gathering inventory and compliance information for the assets deployed in that environment. It submits that information to your Deepfence ThreatMapper or ThreatStryker Management Console

  HCL

  •

  Apache License 2.0

  •1•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• nnUNet-cpu

  Public
  version of nnUnet which allows inference on cpu's

  Python

  •

  Apache License 2.0

  •1.8k•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• PAM

  Public
  Prognostic AI-Monitoring

  Python

  •4•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• aks-audit-log

  Public
  Instructions and code to connect Azure Kubernetes Service audit logs to Sysdig agent

  Shell

  •

  Apache License 2.0

  •6•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• jsonargparse

  Public
  Implement minimal boilerplate CLIs derived from type hints and parse from command line, config files and environment variables

  Python

  •

  MIT License

  •47•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• ahcore

  Public
  Ahcore are the AI for Oncology histopathology core models

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• dcm4chee-arc-light-fork

  Public
  DICOM Archive J2EE application

  Java

  •241•0•0•1•Updated Apr 7, 2024Apr 7, 2024

• tiffslide

  Public
  TiffSlide - cloud native openslide-python replacement based on tifffile

  Python

  •

  Other

  •12•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• copybara-deploy

  Public
  copybara deployment - contains releases of Google's copybara uberjar

  3•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• TotalSegmentator

  Public
  Tool for robust segmentation of >100 important anatomical structures in CT images

  Python

  •

  Apache License 2.0

  •248•0•0•0•Updated Jan 24, 2024Jan 24, 2024

• spark-dicom

  Public
  Spark dicom (streaming) connector

  Scala

  •

  Apache License 2.0

  •2•4•2•1•Updated Dec 15, 2023Dec 15, 2023

• repository-scanner

  Public
  Tool to detect secrets in source code management systems.

  Python

  •

  MIT License

  •20•0•0•0•Updated Jun 21, 2023Jun 21, 2023