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    12 repositories

    • tessera

      Public
      Jupyter Notebook
      •2•4•5•0•Updated Nov 13, 2024Nov 13, 2024

    • nsclc_manuscript_2023

      Public
      Code used in the analysis of "Human lung cancer harbors spatially-organized stem-immunity hubs associated with response to immunotherapy" Chen et al Nature Immunology 2024
      Jupyter Notebook
      •2•1•0•0•Updated Feb 14, 2024Feb 14, 2024

    • baysorrr

      Public
      R wrapper to Julia Baysor package, optimized for running on large datasets
      R
      •2•2•0•1•Updated Dec 22, 2023Dec 22, 2023

    • rcna

      Public
      R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
      R
      •5•13•5•0•Updated Aug 24, 2023Aug 24, 2023

    • spatula

      Public
      Set of useful functions for handling spatial genomics data
      Jupyter Notebook
      •1•4•0•0•Updated Aug 4, 2023Aug 4, 2023

    • BestPractices

      Public
      This is a collection of notebooks, tutorials, and notes on best practices within the lab for single cell and spatial genomics analysis.
      GNU General Public License v3.0
      •0•0•0•0•Updated May 28, 2023May 28, 2023

    • SynovialImageProcessing

      Public
      0•0•0•0•Updated Feb 14, 2022Feb 14, 2022

    • labdocs

      Public
      Documents relevant to lab functions
      0•0•0•0•Updated Dec 17, 2021Dec 17, 2021

    • presto

      Public
      ❗ This is a read-only mirror of the original presto R package repository housed at github.com/immunogenomics/presto
      R
      •0•1•0•0•Updated Jul 28, 2021Jul 28, 2021

    • lisi

      Public
      ❗ This is a read-only mirror of the original lisi R package repository housed at github.com/immunogenomics/lisi
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 28, 2021Jul 28, 2021

    • harmony

      Public
      ❗ This is a read-only mirror of the original harmony R package repository housed at github.com/immunogenomics/harmony
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 28, 2021Jul 28, 2021

    • symphony

      Public
      ❗ This is a read-only branch of the original symphony R package repository housed at github.com/immunogenomics/symphony
      R
      •
      Other
      •22•0•0•0•Updated Jul 27, 2021Jul 27, 2021