diff --git a/tests/test_ref.py b/tests/test_ref.py index 21d9f6a..a128c9d 100755 --- a/tests/test_ref.py +++ b/tests/test_ref.py @@ -329,7 +329,7 @@ def test_ref(self): self.gtf_path, use_version=True, filter_func=mock.ANY ) create_t2g_from_fasta.assert_called_once_with( - cdna_fasta_path, t2g_path + cdna_fasta_path, t2g_path, aa_flag=False ) split_genomic_fasta_to_cdna.assert_called_once_with( self.fasta_path, @@ -446,7 +446,7 @@ def test_ref_override_k(self): self.gtf_path, use_version=True, filter_func=mock.ANY ) create_t2g_from_fasta.assert_called_once_with( - cdna_fasta_path, t2g_path + cdna_fasta_path, t2g_path, aa_flag=False ) split_genomic_fasta_to_cdna.assert_called_once_with( self.fasta_path, @@ -502,7 +502,7 @@ def test_ref_exists(self): split_genomic_fasta_to_cdna.assert_not_called() concatenate_files.assert_not_called() create_t2g_from_fasta.assert_called_once_with( - cdna_fasta_path, t2g_path + cdna_fasta_path, t2g_path, aa_flag=False ) kallisto_index.assert_called_once_with( cdna_fasta_path, index_path, k=31 @@ -591,7 +591,7 @@ def test_ref_overwrite(self): self.gtf_path, use_version=True, filter_func=mock.ANY ) create_t2g_from_fasta.assert_called_once_with( - cdna_fasta_path, t2g_path + cdna_fasta_path, t2g_path, aa_flag=False ) split_genomic_fasta_to_cdna.assert_called_once_with( self.fasta_path,