From e0f175e81ed09d05b93d4cb9bb2025daf3f9b196 Mon Sep 17 00:00:00 2001 From: Delaney Sullivan Date: Sun, 15 Oct 2023 18:57:59 -0700 Subject: [PATCH] Update NONE to onlist --- kb_python/main.py | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/kb_python/main.py b/kb_python/main.py index deca4e4..5e128c6 100755 --- a/kb_python/main.py +++ b/kb_python/main.py @@ -389,9 +389,6 @@ def parse_count( 'and crash for large count matrices.' )) - if args.w and args.w.lower() == 'none': - args.w = None - if args.filter_threshold and args.filter != 'bustools': parser.error( 'Option `--filter-threshold` may only be used with `--filter bustools`.' @@ -1169,8 +1166,9 @@ def setup_count_args( help=( 'Path to file of on-listed barcodes to correct to. ' 'If not provided and bustools supports the technology, ' - 'a pre-packaged on-list is used. Otherwise, or if \'None\', is ' - 'provided, the bustools whitelist command is used. ' + 'a pre-packaged on-list is used. Otherwise, ' + 'the bustools whitelist command is used. ' + 'Specify NONE to bypass barcode error correction. ' '(`kb --list` to view on-lists)' ), type=str