From a19c9d844aeefc7a0b29ad37cef0b21904bd615d Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Sun, 7 Apr 2024 16:08:22 -0500 Subject: [PATCH] update wfmash/seqwish/smoothxg/odgi --- Dockerfile | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/Dockerfile b/Dockerfile index ef145af..b38ab09 100644 --- a/Dockerfile +++ b/Dockerfile @@ -50,7 +50,7 @@ RUN wget https://github.com/samtools/bcftools/releases/download/1.19/bcftools-1. RUN git clone --recursive https://github.com/waveygang/wfmash \ && cd wfmash \ && git pull \ - && git checkout e7850f9e9ba743a350b36b5e51ae8c414fba717d \ + && git checkout d7b696087f634f25e4b3de7dd521e1c4bfa3cf0e \ && git submodule update --init --recursive \ && sed -i 's/-march=native/-march=sandybridge/g' src/common/wflign/deps/WFA2-lib/Makefile \ && cmake -H. -DCMAKE_BUILD_TYPE=Generic -DEXTRA_FLAGS='-march=sandybridge -Ofast' -Bbuild && cmake --build build -- -j $(nproc) \ @@ -66,7 +66,7 @@ RUN git clone --recursive https://github.com/waveygang/wfmash \ RUN git clone --recursive https://github.com/ekg/seqwish \ && cd seqwish \ && git pull \ - && git checkout f44b402f0c2e02988d431d9b2e5eba9727cf93a9 \ + && git checkout 75e807c7e3e92c84068cd3c2c7394eb313732a0a \ && git submodule update --init --recursive \ && cmake -H. -DCMAKE_BUILD_TYPE=Generic -DEXTRA_FLAGS='-march=sandybridge -Ofast' -Bbuild && cmake --build build -- -j $(nproc) \ && cp bin/seqwish /usr/local/bin/seqwish \ @@ -76,7 +76,7 @@ RUN git clone --recursive https://github.com/ekg/seqwish \ RUN git clone --recursive https://github.com/pangenome/smoothxg \ && cd smoothxg \ && git pull \ - && git checkout 4c269081faf86302e22f0271931b2d862277d3fa \ + && git checkout c216a84c51e8fa462aa0e26e56f08e4580d5c69c \ && git submodule update --init --recursive \ && sed -i 's/-msse4.1/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \ && sed -i 's/-march=native/-march=sandybridge -Ofast/g' deps/spoa/CMakeLists.txt \