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The issue described at RcppCore/Rcpp#1287 has been fixed to avoid WARNINGs from CRAN checks on some platforms. Thank you to Dirk Eddelbuettel for providing the fix so quickly!
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Fixed issues with the incorrect use of \itemize in some Rd files.
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If the argument
k = 0
is supplied tokgaps()
then an estimate of 1 is returned for the extremal index for any input data. For this very special case the estimated standard error associated with this estimate is set to zero and confidence intervals have a width of zero. -
Corrected a typing error in the description of
uprob
in the documentation forplot.choose_uk()
andplot.choose_ud()
. -
The unnecessary C++11 specification has been dropped to avoid a CRAN Package Check NOTE.
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README.md: Used app.codecov.io as base for codecov link.
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Create the help file for the package correctly, with alias exdex-package.
- A new estimator has been implemented, based on what we will call the D-gaps model of Holesovsky, J. and Fusek, M. Estimation of the extremal index using censored distributions. Extremes 23, 197–213 (2020). doi: 10.1007/s10687-020-00374-3
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The value returned by
nobs.kgaps()
was incorrect in cases where there are censored K-gaps that are equal to zero. These K-gaps should not contribute to the number of observations. This has been corrected. -
In cases where the data used in
kgaps
are split into separate sequences, the threshold exceedance probability is estimated using all the data rather than locally within each sequence. -
A
logLik
method for objects inheriting from class"kgaps"
has been added. -
In the (unexported, internal) function
kgaps_conf_int()
the limits of the confidence intervals for the extremal index based on the K-gaps model are constrained manually to (0, 1) to avoid problems in calculating likelihood-based confidence intervals in cases where the the log-likelihood is greater than the interval cutoff when theta = 1. -
In the documentation of the argument
k
tokgaps()
it is noted that in practicek
should be no smaller than 1. -
The function
kgaps()
also return standard errors based on the expected information. -
In the package manual related functions have been arranged in sections for easier reading.
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Activated 3rd edition of the
testthat
package
- The functions
kgaps()
,kgaps_imt()
andchoose_uk()
can now accept adata
argument that- is a matrix of independent subsets of data, such as monthly or seasonal time series from different years,
- contains missing values, that is,
NA
s.
- A new dataset
cheeseboro
is included, which is a matrix containing some missing values. - In addition to
kgaps()
, the functionskgaps_imt()
andchoose_uk()
now have an extra argumentinc_cens
, which allows contributions from censored K-gaps to be included in the log-likelihood for the extremal index. - The default value of
inc_cens
inkgaps()
(and inkgaps_imt()
andchoose_uk()
) is nowinc_cens = TRUE
.
- Plot and print methods have been added for objects of class
"confint_gaps"
returned fromconfint.kgaps()
. - In
confint.spm()
andconfint.kgaps()
the input confidencelevel
is included in the output object.
- An overloading ambiguity has been corrected to ensure installation on Solaris.