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peaks_test.xls
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peaks_test.xls
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# This file is generated by MACS version 2.1.0.20150731
# Command line: callpeak --treatment /project/wig-data/dromel/tf-chip-seq/GSE40646/SRR567536.sam /project/wig-data/dromel/tf-chip-seq/GSE40646/SRR567537.sam --control /project/wig-data/dromel/tf-chip-seq/GSE40646/SRR039090.sam /project/wig-data/dromel/tf-chip-seq/GSE40646/SRR039091.sam /project/wig-data/dromel/tf-chip-seq/GSE40646/SRR039092.sam --name GSE40646 --outdir /project/wig-data/dromel/tf-chip-seq/GSE40646 --format SAM --gsize dm --bw 100 --pvalue 1e-5 --mfold 2 100 --tsize 50
# ARGUMENTS LIST:
# name = GSE40646
# format = SAM
# ChIP-seq file = ['/project/wig-data/dromel/tf-chip-seq/GSE40646/SRR567536.sam', '/project/wig-data/dromel/tf-chip-seq/GSE40646/SRR567537.sam']
# control file = ['/project/wig-data/dromel/tf-chip-seq/GSE40646/SRR039090.sam', '/project/wig-data/dromel/tf-chip-seq/GSE40646/SRR039091.sam', '/project/wig-data/dromel/tf-chip-seq/GSE40646/SRR039092.sam']
# effective genome size = 1.20e+08
# band width = 100
# model fold = [2, 100]
# pvalue cutoff = 1.00e-05
# qvalue will not be calculated and reported as -1 in the final output.
# Larger dataset will be scaled towards smaller dataset.
# Range for calculating regional lambda is: 1000 bps and 10000 bps
# Broad region calling is off
# tag size is determined as 50 bps
# total tags in treatment: 10699730
# tags after filtering in treatment: 3279014
# maximum duplicate tags at the same position in treatment = 1
# Redundant rate in treatment: 0.69
# total tags in control: 4975812
# tags after filtering in control: 4677083
# maximum duplicate tags at the same position in control = 1
# Redundant rate in control: 0.06
# d = 145
# alternative fragment length(s) may be 145 bps
chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name
2L 5757 6000 244 5865 33.00 19.80930 6.85188 17.72220 GSE40646_peak_1
2L 47233 47440 208 47354 36.00 19.64820 6.26315 17.56620 GSE40646_peak_2
2L 66379 67590 1212 66957 252.00 350.15125 50.98605 346.52545 GSE40646_peak_3
2L 72305 72837 533 72525 170.00 208.55824 34.46093 205.73439 GSE40646_peak_4
2L 72999 73217 219 73130 25.00 12.71170 5.23967 10.70088 GSE40646_peak_5
2L 73683 74157 475 73984 29.00 16.14739 6.04578 14.09639 GSE40646_peak_6
2R 3613848 3614181 334 3614047 65.00 53.35590 12.67650 51.07023 GSE40646_peak_890
2R 3630438 3630742 305 3630554 24.00 11.89183 5.03815 9.89196 GSE40646_peak_891
2R 3632607 3633338 732 3632855 241.00 330.38956 48.76926 326.93863 GSE40646_peak_892
2R 3633414 3633562 149 3633472 25.00 12.71170 5.23967 10.70088 GSE40646_peak_893
2R 3643205 3643372 168 3643303 28.00 12.96569 4.90896 10.95296 GSE40646_peak_894
2R 3646319 3646793 475 3646442 37.00 23.17691 7.45571 21.06385 GSE40646_peak_895
2R 3666770 3668040 1271 3667119 215.00 279.22906 41.55106 276.10809 GSE40646_peak_896
2R 3668231 3668440 210 3668363 22.00 9.94311 4.47695 7.97607 GSE40646_peak_897
2R 3670063 3670392 330 3670180 38.00 19.47459 5.90136 17.39344 GSE40646_peak_898
2R 3670470 3670926 457 3670719 227.00 305.24335 45.83118 301.97476 GSE40646_peak_899