README.md

Metabolomics Workflows course - PhenoMeNal module

Variations of this material have been used for:

• 4th day of the EMBL-EBI Metabolomics Workflows Course 2017, held on November 2017 at EMBL-EBI.
• EMBO Metabolomics Course 2018, at EMBL-EBI.
• denbi Metabolomics Winter School, at Leucorea Wittenberg, Germany.

Introduction to PhenoMeNal

Pablo Moreno (EBI) & Steffen Neumann (IPB-Halle)

Slides (30 minutes)

Hands on 1: Portal, public instance and deployment.

Portal hands on, to trigger a deployment and use the Galaxy instance deployed. Following these instructions.

Hands on 2: Build a workflow

You will be assigned to an instance previously deployed. We will first execute some tools one by one, and then build a workflow with them. The focus of the exercise is the mechanistic operation within Galaxy.

Login to your assigned instance.

2.1 Add data to your Galaxy instance

Follow these instructions for adding data to your account on the instance.

2.2 Run tools individually

Follow these instructions for running individual tools with the data.

2.3 Building a fluxomics workflow

Follow these instructions for workflow building inside the instance.

2.4 Running an existing fluxomics workflow

Follow these instructions for running the analysis with an existing workflow.